Citrus Sinensis ID: 037155
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1403 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC87 | 1453 | ABC transporter G family | yes | no | 0.963 | 0.930 | 0.697 | 0.0 | |
| Q7PC84 | 1454 | ABC transporter G family | no | no | 0.960 | 0.926 | 0.689 | 0.0 | |
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.955 | 0.917 | 0.681 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.947 | 0.926 | 0.615 | 0.0 | |
| Q8GU86 | 1454 | Pleiotropic drug resistan | yes | no | 0.958 | 0.925 | 0.598 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.948 | 0.917 | 0.589 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.946 | 0.933 | 0.589 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.958 | 0.931 | 0.601 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.946 | 0.907 | 0.606 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.947 | 0.912 | 0.600 | 0.0 |
| >sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2047 bits (5303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1402 (69%), Positives = 1155/1402 (82%), Gaps = 50/1402 (3%)
Query: 7 DDLARSFSVRGGQSISSGSHRSWASA---SIREVWNAP-DNVFSRSER-QDDEEELRWAA 61
+DL R+ S RG S+ S SHRS A A S R+V+ P D+VF RS+R ++D+ ELRWAA
Sbjct: 6 EDLVRTMSGRG--SLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRWAA 63
Query: 62 IERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTR 121
+ERLPTYDRL+KGML Q + +GK+ +VDVT+L ++KK LME IL+ VEEDNE+FL R
Sbjct: 64 LERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRR 123
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKK 181
+R RTDRVGIE+PKIEVRY++LSV+GDV SRALPTL NV LNTIES LGL HL+PSKK
Sbjct: 124 LRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKK 183
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
R ++ILKD+SGI+KPSRMTLLLGPP +GKTTL+ ALAGKL + L
Sbjct: 184 RKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTL---------------- 227
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
Q SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE+LDFSGRCLGVGTRY+LL
Sbjct: 228 --QMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLT 285
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
ELSRRE++ GIKPDPEIDAFMK++A++GQETSLVTDYVLKLLGLDICADT+VGD MRRGI
Sbjct: 286 ELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGI 345
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ+KR+TTGEMLVG A L MDEISTGLDSSTTFQICKF++Q+VHI DVTM+++LLQP
Sbjct: 346 SGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQP 405
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQ 481
APET++LFDDIIL+SEGQIVY G RDNVLEFFE MGFKCPERKG+ADFLQEVTSKKDQEQ
Sbjct: 406 APETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQ 465
Query: 482 YWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWEL 541
YW R+ PY Y+ V DF GF SFH GQQLAS+ RVPYDK++THPAALV +KYGIS +L
Sbjct: 466 YWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDL 525
Query: 542 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFS 601
F+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTV+FRTEM VG ++ G K++GALFFS
Sbjct: 526 FKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFS 585
Query: 602 LLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTY 661
L+N+MFNGMAEL+ TV+RLPVF+KQRD LFYP WAFALP ++L+IPLSL++S IWI LTY
Sbjct: 586 LINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTY 645
Query: 662 YTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGF 721
YTIGFAP+A+RFF+Q LAYFC++ MAL L+RF+ A+GRTEVI N+ GT ALL++F LGGF
Sbjct: 646 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGF 705
Query: 722 IIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRG 781
II+KDDI +L W YY SPMMYGQT+++++EFLD RW P+ D IN +T+G+ LLK RG
Sbjct: 706 IISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRG 765
Query: 782 FYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSN-STVVEEDGDKKRASGNEVE 840
F+ + YW+WI IGAL+GF+ LFNF +I AL YLNP+G+S +TVVEE DK + S +
Sbjct: 766 FFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTG 825
Query: 841 GTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQL 900
G S E+ + P++GM+LPF+PLSL FN +NYYVDMPAEMK +GV DRLQL
Sbjct: 826 G------SVVELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQL 879
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+EG I ISGYPK Q TFARVS
Sbjct: 880 LRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVS 939
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLP 1020
GYCEQ DIHSPHVT+YESL+YSAWLRLS+D+DTK R++FV+EVMELVELKPLR+++VGLP
Sbjct: 940 GYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLP 999
Query: 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1080
GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 1000 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1059
Query: 1081 IHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWM 1140
IHQPSIDIFE+FDELLLMKRGG+VIYAG LG S KL+EYFEA+ GVPKIKD YNPATWM
Sbjct: 1060 IHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWM 1119
Query: 1141 LEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQF 1200
L+V+ S+E+Q+ VDFA+I+ NSS+++RNQELIKELSTP PGS++L+F TKY+QPF TQ
Sbjct: 1120 LDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQT 1179
Query: 1201 KASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVC 1260
KA FWK YWS WR PQYNAIRFLMT I + FGLLFW G K ++QDL N GAMY+
Sbjct: 1180 KACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAV 1239
Query: 1261 LFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVA 1320
LFLG TNA + P + +ERTV+YRE+AAGM+SA+ YA+ QVA
Sbjct: 1240 LFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAIS------------------QVA 1281
Query: 1321 VEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQV 1380
VEI+Y T QT +Y LILYSMIG+ W + KFF F+Y+M FV FTLYGMM+VALTP Q+
Sbjct: 1282 VEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQI 1341
Query: 1381 ATIVLSFFLALWNLFAGFMIPR 1402
A I LSFFL+ WNLF+GF+IPR
Sbjct: 1342 AGICLSFFLSFWNLFSGFLIPR 1363
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2035 bits (5271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1393 (68%), Positives = 1147/1393 (82%), Gaps = 46/1393 (3%)
Query: 14 SVRGGQSISSGSHRSW--ASASIREVW-NAPDNVFSRSER-QDDEEELRWAAIERLPTYD 69
++ G S++S SHRS AS S R+V+ D VF RSER ++D+ ELRWAAIERLPT+D
Sbjct: 14 ALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDMELRWAAIERLPTFD 73
Query: 70 RLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRV 129
RL+KGML Q +GK+ ++D+T L +DKK LME IL VEEDNE+FL +R RTDRV
Sbjct: 74 RLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRV 133
Query: 130 GIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKD 189
GIE+PKIEVRY+++SV+GDV SRALPTL NV LNT+ES LG HL+PSK++ +QILKD
Sbjct: 134 GIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKD 193
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKI 249
+SGIVKPSRMTLLLGPP +GKTTL+ ALAGKL + L Q SG+I
Sbjct: 194 ISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTL------------------QMSGRI 235
Query: 250 TYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 309
TYCGHE EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+L++ELSRREK+
Sbjct: 236 TYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKE 295
Query: 310 QGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRV 369
+GIKPDP+IDAFMK++A++GQETSLVTDYVLK+LGLDICAD + GD MRRGISGGQKKR+
Sbjct: 296 EGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRL 355
Query: 370 TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLF 429
TTGEMLVG A+ L MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++LLQPAPET++LF
Sbjct: 356 TTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELF 415
Query: 430 DDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQP 489
DDIIL+SEGQIVY GPRDNVLEFFE GF+CPERKGVADFLQEVTSKKDQEQYW ++ QP
Sbjct: 416 DDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQP 475
Query: 490 YRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFARE 549
Y Y+ VSDF GF +FH GQ+L S+ RVPYDK++TH AALV +KYGIS WELF+ACF RE
Sbjct: 476 YNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDRE 535
Query: 550 WLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNG 609
WLLMKRNSFVY+FKT Q+T MSLI MTV+ RTEM VG + G K++GA+FFSL+N+MFNG
Sbjct: 536 WLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNG 595
Query: 610 MAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPA 669
+AEL+ TV+RLPVFYKQRD LFYP WAFALP W+L+IPLSL++S IWI LTYYTIGFAP+
Sbjct: 596 LAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPS 655
Query: 670 ASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIE 729
A+RFF+Q LAYFC++ MAL L+RF+ AIGRTEVI+N++GTF LL++F+LGGFIIAKDDI
Sbjct: 656 AARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIR 715
Query: 730 PFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWY 789
P++ W YY+SPMMYGQT+I+++EFLD RW P+ D IN +T+G+ LLK RGF+ + YW+
Sbjct: 716 PWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWF 775
Query: 790 WIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSS 849
WI I AL+GFS LFN +I AL YLNP+G+S +TVVEE DK++ EG+ + + SS
Sbjct: 776 WICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSS 835
Query: 850 TEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFR 909
+ P+RGM+LPF+PLSL FN +NYYVDMP+EMK +GV DRLQLL V GAFR
Sbjct: 836 S------NKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFR 889
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIH 969
PG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q TFARVSGYCEQ DIH
Sbjct: 890 PGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIH 949
Query: 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029
SPHVT+YESL+YSAWLRLS+D+D K R++FV+EVMELVELKPLR+++VGLPGV+GLSTEQ
Sbjct: 950 SPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQ 1009
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1089
RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF
Sbjct: 1010 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1069
Query: 1090 EAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVE 1149
E+FDELLLMKRGG+VIYAG LG S KL+EYFEAV GVPKI D YNPATWML+V+ S+E
Sbjct: 1070 ESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSME 1129
Query: 1150 NQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYW 1209
+Q+ +DFA+I++NSSL++RNQELIK+LSTP PGS +++F TKY+Q F TQ KA FWKQYW
Sbjct: 1130 SQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYW 1189
Query: 1210 SYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAV 1269
SYWR+PQYNAIRFLMT I + FGL+FW G K+ +QDL N GAMY+ LFLG NA
Sbjct: 1190 SYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAA 1249
Query: 1270 SAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQ 1329
+ P I +ERTV+YRE+AAGM+SA+ YA+ QVAVEI+Y T Q
Sbjct: 1250 TVQPAIAIERTVFYREKAAGMYSAIPYAIS------------------QVAVEIMYNTIQ 1291
Query: 1330 TVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFL 1389
T +Y LILYSMIG W + KF F+Y+M SF+ FTLYGMM++ALTP Q+A I +SFFL
Sbjct: 1292 TGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFL 1351
Query: 1390 ALWNLFAGFMIPR 1402
+LWNLF+GF+IPR
Sbjct: 1352 SLWNLFSGFLIPR 1364
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1963 bits (5086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1396 (68%), Positives = 1133/1396 (81%), Gaps = 55/1396 (3%)
Query: 22 SSGSHRSW-ASASIREVWNAPDNVFS-------RSERQDDEEELRWAAIERLPTYDRLKK 73
S+ SW +S SIREV+ +VF R +++E+EL+WAAI+RLPTY+RL+K
Sbjct: 15 SNSRMSSWRSSQSIREVFGGSSDVFMKNYSTRWREMAEEEEKELKWAAIDRLPTYNRLRK 74
Query: 74 GMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEI 133
GM+ +++ +G+VV HEVD+T LG QDKK LMESIL++VE+DNE+FL R+R+RTDRVGIEI
Sbjct: 75 GMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRLRNRTDRVGIEI 134
Query: 134 PKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGI 193
PKIEVR+ +LSV GD +VG+RALPTLLN LNTIE+ LGL+HL PSKKR V+IL+DVSGI
Sbjct: 135 PKIEVRFQNLSVGGDAYVGTRALPTLLNSTLNTIEAVLGLIHLSPSKKRVVKILEDVSGI 194
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
++PSRMTLLLGPPG+GKTT + ALAGK ++LRV +GKITYCG
Sbjct: 195 IRPSRMTLLLGPPGSGKTTFLKALAGKSEKDLRV------------------NGKITYCG 236
Query: 254 HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIK 313
HE +EFVPQRT AYISQHDLHHGEMTVRETLDF+GRCLGVGTRY+LL ELSRREK+ GI
Sbjct: 237 HEFHEFVPQRTSAYISQHDLHHGEMTVRETLDFAGRCLGVGTRYDLLVELSRREKEAGIM 296
Query: 314 PDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGE 373
PDP+IDAFMKA A+ GQETSL+TDYVLK+LGLDICAD MVGD+MRRGISGGQKKRVTTGE
Sbjct: 297 PDPQIDAFMKATAIDGQETSLITDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGE 356
Query: 374 MLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDII 433
MLVG AK MDEIS GLDSSTT+QI KF++QMVHI D+TM+++LLQPAPET+DLFDD+I
Sbjct: 357 MLVGPAKAFFMDEISKGLDSSTTYQIVKFMRQMVHINDITMVISLLQPAPETFDLFDDVI 416
Query: 434 LISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYI 493
++SEGQIVY GPR+NVLEFFE MGF+CPERK +ADFL EVTSKKDQEQYWFRK++PY YI
Sbjct: 417 VLSEGQIVYQGPRENVLEFFEYMGFRCPERKAIADFLLEVTSKKDQEQYWFRKSRPYVYI 476
Query: 494 PVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLM 553
V +F E F SF +G+Q+ +L +PYDK H AALVK KYGIS WELF++CF REWLLM
Sbjct: 477 SVPEFSESFNSFQIGEQIIEELTIPYDKYSVHRAALVKNKYGISSWELFKSCFTREWLLM 536
Query: 554 KRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAEL 613
KR+SF+YIFKT Q+T M+ I +TVF RT+M G ++ K++GALFFSL+N+MFNGM EL
Sbjct: 537 KRSSFLYIFKTTQITIMATIALTVFLRTQMKAGTVKDSAKFWGALFFSLINVMFNGMQEL 596
Query: 614 SMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRF 673
+MTV RLPVF+KQR+ LFYPAWAFALPIWVL+IP+SL++S IWI+LTYYTIGFAPAASRF
Sbjct: 597 AMTVFRLPVFFKQRNSLFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASRF 656
Query: 674 FKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLE 733
FKQ LA+ +H MAL L+RFIAA GRT+V+ N LGTF LL++F LGGFI++KDDI+ ++
Sbjct: 657 FKQLLAFIGVHQMALSLFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWMI 716
Query: 734 WGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGI 793
WGYY+SPMMYGQ +I ++EFLD RW P+ ++ T+GK LL RG + WYWI I
Sbjct: 717 WGYYLSPMMYGQNAIAINEFLDDRWSAPTNG---SQPTVGKTLLHARGLFTTESWYWISI 773
Query: 794 GALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNE---VEGTQMT-VRS- 848
GAL GFS LFN LFIAALT+LNPIGD+ + V E+GDK E V QM RS
Sbjct: 774 GALFGFSLLFNVLFIAALTFLNPIGDTKAVKV-ENGDKNNRRPQETAIVGDIQMAPTRSQ 832
Query: 849 --STEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSG 906
++ ++ N R+GMILPF+PLSL FN +NYYVDMPAEMKT+GV E+RLQLL SG
Sbjct: 833 ANTSSVIPFPNNESRKGMILPFQPLSLAFNHVNYYVDMPAEMKTQGVEEERLQLLRDASG 892
Query: 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQT 966
AFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q TFARVSGYCEQ
Sbjct: 893 AFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQN 952
Query: 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026
DIHSP+VT+YESLLYSAWLRL+SDV T+ RK+FV+EVMELVELK LR+ALVGLPGV+GLS
Sbjct: 953 DIHSPYVTVYESLLYSAWLRLASDVKTETRKMFVEEVMELVELKLLRNALVGLPGVDGLS 1012
Query: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
TEQRKRLT AVELVANPSIIFMDEPTSGLDARAAAIVMRTVR TVDTGRTVVCTIHQPSI
Sbjct: 1013 TEQRKRLTTAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSI 1072
Query: 1087 DIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNI 1146
DIFEAFDELLLMK GG+VIYAGPLG SHKL+EYFE +PGVPKI+++ NPATWML+VS+
Sbjct: 1073 DIFEAFDELLLMKIGGQVIYAGPLGHRSHKLVEYFETIPGVPKIRESDNPATWMLDVSSS 1132
Query: 1147 SVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWK 1206
S+E QL VDFAE+YANS+L+QRNQ LIKELSTP S +L+FPT+YSQ F TQ KA FWK
Sbjct: 1133 SMEAQLVVDFAEVYANSNLYQRNQLLIKELSTPATCSKDLYFPTQYSQSFITQCKACFWK 1192
Query: 1207 QYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTT 1266
Q+WSYWRN QYNAIRF MT I I FG++FW+KG + RQQDL NLLGA Y+ +FLG T
Sbjct: 1193 QHWSYWRNSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGAT 1252
Query: 1267 NAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYV 1326
NA + V+ +ERTV+YRERAAGM+S L YA QVA+E IYV
Sbjct: 1253 NASAVQSVVAIERTVFYRERAAGMYSELPYAFA------------------QVAIETIYV 1294
Query: 1327 TAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLS 1386
QT +Y L+L+SMIG++W KFF F+YF++ F F++YGMM+VALTPG Q+A IV+S
Sbjct: 1295 AIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMS 1354
Query: 1387 FFLALWNLFAGFMIPR 1402
FFL+ WNLF+GF+IPR
Sbjct: 1355 FFLSFWNLFSGFLIPR 1370
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1777 bits (4602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1383 (61%), Positives = 1064/1383 (76%), Gaps = 54/1383 (3%)
Query: 24 GSHRSWASASIREVW-NAPDNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQILE 81
GS R A+ +W N +FSRS R +DDEE L+WAA+E+LPT+DRL+KG+L
Sbjct: 16 GSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLF---- 71
Query: 82 DGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYD 141
+ EVD+ LG Q++K L+E ++++ +EDNE+FL ++++R DRVGI++P IEVRY+
Sbjct: 72 GSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYE 131
Query: 142 HLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTL 201
HL++D D +VGSR+LPT +N N +E+ L LH++ S+KR + ILKD+SGI+KP RMTL
Sbjct: 132 HLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTL 191
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
LLGPP +GKTTL+LALAGKL L+V +GK++Y GHEL+EFVP
Sbjct: 192 LLGPPSSGKTTLLLALAGKLDPALKV------------------TGKVSYNGHELHEFVP 233
Query: 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321
QRT AYISQHDLH GEMTVRETL+FS RC GVG+R+E+LAELSRREK IKPD +ID +
Sbjct: 234 QRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIY 293
Query: 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKV 381
MKA A GQE ++VTDYVLK+LGLDICADTMVGD+M RGISGGQKKRVTTGEMLVG +K
Sbjct: 294 MKAAATEGQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKA 353
Query: 382 LLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIV 441
L MDEISTGLDSSTT+ I L+Q V I+ T +++LLQPAPETY+LFDDIIL+S+G IV
Sbjct: 354 LFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIV 413
Query: 442 YHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEG 501
Y GPRD+VLEFFE MGFKCP+RKGVADFLQEVTSKKDQ+QYW ++N+PYR+I +F E
Sbjct: 414 YQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEA 473
Query: 502 FKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYI 561
++SFH+G++L +L P+DK++ HPAAL EKYGI K EL + C RE LLMKRNSFVY+
Sbjct: 474 YQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYM 533
Query: 562 FKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLP 621
FK QLT M+LI MT+FFRTEM + G Y GALFF ++ IMFNGM+EL+MT+ +LP
Sbjct: 534 FKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLP 593
Query: 622 VFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYF 681
VFYKQRD LF+P+WA+A+P W+L+IP++L++ +W++LTYY IGF P +RF KQ+L
Sbjct: 594 VFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLI 653
Query: 682 CIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPM 741
++ MA ++RFI A+GRT + + G+FALLL F+LGGF++++DD++ + WGY++SPM
Sbjct: 654 VVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPM 713
Query: 742 MYGQTSILVDEFLDGRWD--VPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGF 799
MY SILV+EF +W+ VP G+ TLG ++K RGF+ ++YWYWIG+GAL+GF
Sbjct: 714 MYSVNSILVNEFDGKKWNHIVPGGN-----ETLGSTVVKSRGFFPEAYWYWIGVGALVGF 768
Query: 800 SFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENA 859
+ +FNF + AL YLNP D V+ EDG+ A EV +Q+T + + E +N
Sbjct: 769 TVVFNFCYSLALAYLNPF-DKPQAVLPEDGEN--AENGEVS-SQITSTDGGDSISESQNN 824
Query: 860 PRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGV 919
++GM+LPF P S+TF+ + Y VDMP EMK +G GEDRL LL VSGAFRPGVLTALMGV
Sbjct: 825 -KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGV 883
Query: 920 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979
SGAGKTTLMDVLAGRKTGGYI+G+IKISGYPKKQETFAR+SGYCEQ DIHSP+VT+YESL
Sbjct: 884 SGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESL 943
Query: 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1039
+YSAWLRL DVD K RK+FVDEVMELVEL PLR ALVGLPGVNGLSTEQRKRLTIAVEL
Sbjct: 944 VYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVEL 1003
Query: 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMK
Sbjct: 1004 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1063
Query: 1100 RGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEI 1159
RGG+ IY GPLGR S LI+YFE+ PGV KIK+ YNPATWMLEV+ + E LG+DF E+
Sbjct: 1064 RGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEV 1123
Query: 1160 YANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNA 1219
Y NS L++RN+ LI EL P PGS +LHF T+YSQ F+TQ A WKQ+WSYWRNP Y A
Sbjct: 1124 YKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTA 1183
Query: 1220 IRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVER 1279
+RF+ T IA+ FG +FWD G K S+ QDL N +G+MY+ LFLG NA S PV+ +ER
Sbjct: 1184 VRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIER 1243
Query: 1280 TVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYS 1339
TV+YRERAAGM+SA+ YA G QV++EI Y+ Q+V Y +I+Y+
Sbjct: 1244 TVFYRERAAGMYSAIPYAFG------------------QVSIEIPYIFVQSVFYGIIVYA 1285
Query: 1340 MIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFM 1399
MIGF+W++GKFF + + M+ + + FT YGMM VA+TP Q VA+IV +FF +WNLF+GF+
Sbjct: 1286 MIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFI 1345
Query: 1400 IPR 1402
IPR
Sbjct: 1346 IPR 1348
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1725 bits (4467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 839/1403 (59%), Positives = 1046/1403 (74%), Gaps = 58/1403 (4%)
Query: 17 GGQSISSGSHRSWAS---ASIREVWNAPDNVFSRS------ERQDDEEELRWAAIERLPT 67
G+ SGS RSW S AS+ D+ F RS + DDEE LRWAA+E+LPT
Sbjct: 2 AGEITPSGSRRSWLSSGAASLARSLRDGDDPFRRSAAASRRDAGDDEENLRWAALEKLPT 61
Query: 68 YDRLKKGMLNQILEDGKVV--------KHEVDVTHLGMQDKKQLMESILRIVEEDNERFL 119
YDR+++G+L + ++ G EVD+ +L ++ ++LME + + VE+DNERFL
Sbjct: 62 YDRMRRGILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNERFL 121
Query: 120 TRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPS 179
R R R D+VGIE+PKIEVRY HL ++ DVHVG RALPTLLN +NT+E + L + S
Sbjct: 122 RRFRDRLDQVGIELPKIEVRYQHLDIEADVHVGKRALPTLLNATINTLEGLVSLF--ISS 179
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
KR ++IL DV+GI+KPSRMTLLLGPP +GK+TLM AL GK +NL+V
Sbjct: 180 NKRKLKILNDVNGIIKPSRMTLLLGPPSSGKSTLMRALTGKPDKNLKV------------ 227
Query: 240 WKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
SG+ITYCGH EF P+RT AY+SQHDLH+ EMTVRETLDFS RCLG G RY++
Sbjct: 228 ------SGEITYCGHTFKEFYPERTSAYVSQHDLHNPEMTVRETLDFSRRCLGSGARYDM 281
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
L+EL+RRE+ GIKPDPEIDA MKA V G++ ++VTD VLK LGLDICADT+VG M R
Sbjct: 282 LSELTRRERNAGIKPDPEIDALMKATVVEGKQNNIVTDLVLKALGLDICADTIVGGAMIR 341
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
GISGGQKKRVTTGEML G A L MDEISTGLDSS+TFQI K+++Q+ H+M+ T++++LL
Sbjct: 342 GISGGQKKRVTTGEMLTGPATALFMDEISTGLDSSSTFQIVKYIRQVTHVMNATVMMSLL 401
Query: 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQ 479
QP PETY LFDDI+LI+EG IVYHGPR+N+LEFFE GF+CPERKGVADFLQEVTS+KDQ
Sbjct: 402 QPPPETYALFDDIVLIAEGYIVYHGPRENILEFFESAGFRCPERKGVADFLQEVTSRKDQ 461
Query: 480 EQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKW 539
+QYWF + YRY+ V +F + FK FH+GQ+L +L+VPYDKS+THPAAL +KYG+S
Sbjct: 462 QQYWFLEQDHYRYVSVEEFAQNFKKFHVGQKLQKELQVPYDKSKTHPAALTTKKYGLSSL 521
Query: 540 ELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALF 599
E +A +REWLLMKRNSF++IFK FQL + I MT+F RT+M +KY GAL
Sbjct: 522 ESLKAVMSREWLLMKRNSFLFIFKAFQLFVLGFITMTLFLRTKMPHEKFSDTSKYVGALT 581
Query: 600 FSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVL 659
SL+ IMFNG EL +T+ +LP+FYKQRD LF+PAW + L +L++PLSL++S++WIVL
Sbjct: 582 ASLITIMFNGFGELQLTIDKLPIFYKQRDFLFFPAWTYGLANIILKVPLSLMESSLWIVL 641
Query: 660 TYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLG 719
TYY +GFAPAA RFFKQ+LAYF H MAL L+R + AI R+ V+ N G F LLLIF G
Sbjct: 642 TYYVVGFAPAAGRFFKQFLAYFWTHQMALALFRLLGAILRSMVVANTFGMFVLLLIFLFG 701
Query: 720 GFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKR 779
GF++++ DI+P+ WGY+ SPMMY ++ V+EFL RW +P+ D SI+ T+GKA L+
Sbjct: 702 GFLVSRKDIKPWWIWGYWTSPMMYSNNALSVNEFLASRWAIPNNDSSISAPTIGKAFLQS 761
Query: 780 RGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEV 839
+G++ + YW+ IGA+IGF +FN L++ ALT+L PIG S STVV +D K
Sbjct: 762 KGYFTGEWGYWLSIGAMIGFMIVFNILYLCALTFLRPIG-SASTVVSDDDTKSELEAESN 820
Query: 840 EGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ 899
+ V + T G E +RGM+LPF+PLSL+FN MNYYVDMPAEMK +G E RLQ
Sbjct: 821 QEQMSEVINGTN--GTENRRSQRGMVLPFQPLSLSFNHMNYYVDMPAEMKAQGFTESRLQ 878
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
LL +SGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT G IEGDIK+SGYPKKQETFAR+
Sbjct: 879 LLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGTIEGDIKLSGYPKKQETFARI 938
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
SGYCEQTDIHSP++T+YES++YSAWLRLSS+VD RK+FV+EVM LVEL LRDALVGL
Sbjct: 939 SGYCEQTDIHSPNLTVYESIVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGL 998
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVC
Sbjct: 999 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVC 1058
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATW 1139
TIHQPSIDIFE+FDELLL+KRGGRVIYAG LG S L+EYFEA+PGVPKI + YNPATW
Sbjct: 1059 TIHQPSIDIFESFDELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPGVPKITEGYNPATW 1118
Query: 1140 MLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQ 1199
MLEVS+ E +L +DFAE+YANS+L++ NQELIK+LS P PG +L FPTKYSQ F Q
Sbjct: 1119 MLEVSSSLAEARLDIDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQ 1178
Query: 1200 FKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSV 1259
A+ WKQ+ SYW++P YNA+R++MT + FG +FW +G+ DL NLLGA Y+
Sbjct: 1179 CVANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGTVFWRRGKNIESVNDLNNLLGATYAA 1238
Query: 1260 CLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQV 1319
FLG N ++ +PV+ VERTV+YRE+AAGM+S LSYA Q
Sbjct: 1239 VFFLGAANLLTLLPVVSVERTVFYREKAAGMYSPLSYAFAQG------------------ 1280
Query: 1320 AVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQ 1379
VE Y Q V+Y +++YSMIG++W+ KFF F +FM A+F FTL+ MM+VA T +
Sbjct: 1281 FVEFCYSAVQGVLYTILIYSMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEM 1340
Query: 1380 VATIVLSFFLALWNLFAGFMIPR 1402
+A +++SF L+ WN FAGF+IPR
Sbjct: 1341 LAAVLVSFVLSSWNNFAGFIIPR 1363
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1715 bits (4442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1395 (58%), Positives = 1058/1395 (75%), Gaps = 64/1395 (4%)
Query: 32 ASIR---EVWNAPDNVFSRS-----ERQDDEEELRWAAIERLPTYDRLKKGMLNQILEDG 83
AS+R +W + +VFSRS + DDEE LRWAA+ERLPTYDR+++G+L EDG
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 84 KV--VKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYD 141
K EVDV LG ++ + L+E ++R ++D+ERFL ++R R DRVGI+ P IEVR++
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 142 HLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTL 201
+L V+ DVHVG+R LPTLLN NT+E+ LH++P+KK+ + +L DVSGI+KP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
LLGPPG+GKTTL+LALAGKL ++L+V SGK+TY GH ++EFVP
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKV------------------SGKVTYNGHGMHEFVP 230
Query: 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321
+RT AYISQHDLH GEMTVRETL FS RC GVGTRYE+L EL+RREK IKPD +ID +
Sbjct: 231 ERTAAYISQHDLHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIY 290
Query: 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKV 381
MKA A+ GQE+S+VTDY+LK+LGLDICADT+VG+EM RGISGGQ+KRVTTGEMLVG A+
Sbjct: 291 MKASAMGGQESSVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARA 350
Query: 382 LLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIV 441
L MDEISTGLDSSTT+QI L+Q +HI+ T +++LLQPAPETY+LFDDIIL+S+GQ+V
Sbjct: 351 LFMDEISTGLDSSTTYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVV 410
Query: 442 YHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEG 501
Y GPR++VLEFFE MGF+CP RKGVADFLQEVTS+KDQ QYW R+++PYR++PV F +
Sbjct: 411 YQGPREHVLEFFEFMGFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADA 470
Query: 502 FKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYI 561
F+SFH+G+ + ++L P+D++++HPAAL KYG+S+ EL +A RE LLMKRN+F+YI
Sbjct: 471 FRSFHVGRSIQNELSEPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYI 530
Query: 562 FKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLP 621
FK LT M+LI MT FFRT M D + G Y GAL+F+L +MFNG AEL+MTV++LP
Sbjct: 531 FKAVNLTLMALIVMTTFFRTSMR-HDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLP 589
Query: 622 VFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYF 681
VF+KQRD LF+PAWA+ +P W+L+IP++ L+ +++ +TYY IGF P+ SRFFKQYL
Sbjct: 590 VFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLL 649
Query: 682 CIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPM 741
++ M+ L+RFIA IGR V+++ G +LL +LGGFI+A+ D++ + WGY++SP+
Sbjct: 650 ALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPL 709
Query: 742 MYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSF 801
Y Q +I +EFL W ++ TLG ++LK RG + ++ WYWIG+GAL+G++
Sbjct: 710 SYAQNAISTNEFLGHSWSQILPGENV---TLGVSVLKSRGIFTEAKWYWIGLGALLGYTL 766
Query: 802 LFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRA--SGNEVEGTQMTVRSSTE-------- 851
LFN L+ AL+ L+P DS++++ E+ +K A +G VEG + T E
Sbjct: 767 LFNLLYTVALSVLSPFTDSHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIAD 826
Query: 852 ----IVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGA 907
I + +A R+GM+LPF PLS++FN + Y VDMP MK +G+ EDRL LL VSG+
Sbjct: 827 QNSGINSADSSASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGS 886
Query: 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI+ISGYPKKQETFAR+SGYCEQ D
Sbjct: 887 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQND 946
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
IHSPHVT+YESL++SAWLRL S+VD++ RK+F++EVM+LVEL LR ALVGLPGV+GLST
Sbjct: 947 IHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLST 1006
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1087
EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSID
Sbjct: 1007 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSID 1066
Query: 1088 IFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNIS 1147
IFEAFDEL LMKRGG IY GP+G+ S KLIEYFE + GV +IKD YNPATWMLEV++ +
Sbjct: 1067 IFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSA 1126
Query: 1148 VENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQ 1207
E LGVDF+EIY S L+QRN+ELI+ELSTP PGS++L+FPT+YS+ F TQ A WKQ
Sbjct: 1127 QEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQ 1186
Query: 1208 YWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTN 1267
WSYWRNP Y A+R L T IA+ FG +FW+ G ++ +QQDL N +G+MY+ L++G N
Sbjct: 1187 NWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQN 1246
Query: 1268 AVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVT 1327
+ S PV+ VERTV+YRERAAGM+SA YA G QVA+E+ Y+
Sbjct: 1247 SGSVQPVVVVERTVFYRERAAGMYSAFPYAFG------------------QVAIELPYIM 1288
Query: 1328 AQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSF 1387
QT++Y +++YSMIGF+W + KF + +FM+ + + FT YGMM V LTP + +A I+ S
Sbjct: 1289 VQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSA 1348
Query: 1388 FLALWNLFAGFMIPR 1402
F +WNLF+G++IPR
Sbjct: 1349 FYNVWNLFSGYLIPR 1363
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1701 bits (4405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1385 (58%), Positives = 1035/1385 (74%), Gaps = 57/1385 (4%)
Query: 24 GSHRSWASASIR---EVW--NAPDNVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLN 77
G+ AS S+R VW ++ +FSRS R+ DDEE LRWAA+E+LPT+DRL+KG+L
Sbjct: 3 GTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILT 62
Query: 78 QILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIE 137
G + +E+D+ LG QD K+L+E ++++ ++++E+ L +++ R DRVGI++P IE
Sbjct: 63 ASHAGGPI--NEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120
Query: 138 VRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPS 197
VR+DHL V+ +VHVG RALPT +N N + L LHLVP++K+ IL DVSGIVKP
Sbjct: 121 VRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPG 180
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN 257
RM LLLGPP +GKTTL+LALAGKL + L+ +G++TY GH +N
Sbjct: 181 RMALLLGPPSSGKTTLLLALAGKLDQELK------------------QTGRVTYNGHGMN 222
Query: 258 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPE 317
EFVPQRT AYI Q+D+H GEMTVRET ++ R GVG+RY++L EL+RREK+ IKPDP+
Sbjct: 223 EFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPD 282
Query: 318 IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 377
ID FMKA++ AG++T+++TDY+LK+LGL++CADTMVGD+M RGISGGQKKRVTTGEMLVG
Sbjct: 283 IDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVG 342
Query: 378 AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISE 437
++ L MDEISTGLDSSTT+QI L+ VHI + T +++LLQPAPET++LFDDIILI+E
Sbjct: 343 PSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAE 402
Query: 438 GQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSD 497
G+I+Y GPRD+V+EFFE MGFKCP RKGVADFLQEVTSKKDQ QYW R+++PYR+I V +
Sbjct: 403 GEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVRE 462
Query: 498 FVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNS 557
F E F+SFH+G+++ +L +P+DK+++HPAAL +KYG+ EL + F+RE+LLMKRNS
Sbjct: 463 FAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNS 522
Query: 558 FVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTV 617
FVY FK QL M+ + MT+FFRTEM G+ Y GALFF L+ +MFNGM+ELSMT+
Sbjct: 523 FVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTI 582
Query: 618 LRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQY 677
+LPVFYKQRD LFYPAW ++LP W+L+IP+S +++ + +TYY IGF P R FKQY
Sbjct: 583 AKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQY 642
Query: 678 LAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYY 737
+ ++ MA L++ +AA+GR ++ N G FA+L+ F+LGG ++++DDI+ + WGY+
Sbjct: 643 ILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYW 702
Query: 738 VSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALI 797
+SP+MYGQ +IL +EF W + S TLG LK RGF +YWYWIG GAL+
Sbjct: 703 ISPIMYGQNAILANEFFGHSWSRAVENSS---ETLGVTFLKSRGFLPHAYWYWIGTGALL 759
Query: 798 GFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEE 857
GF LFNF F ALT+LN +G + + EE + T++ S +V
Sbjct: 760 GFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDE---------TELQSARSEGVVEAGA 810
Query: 858 NAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALM 917
N +RGM+LPF P S+TF+ + Y VDMP EM +G EDRL LL V+GAFRPGVLTALM
Sbjct: 811 NK-KRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALM 869
Query: 918 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977
GVSGAGKTTLMDVLAGRKTGGYI+G+I ISGYPK Q+TFAR+SGYCEQTDIHSPHVT+YE
Sbjct: 870 GVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYE 929
Query: 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1037
SL+YSAWLRL +VD KRKIF++EVMELVEL PLR ALVGLPG +GLSTEQRKRLTIAV
Sbjct: 930 SLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAV 989
Query: 1038 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L
Sbjct: 990 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1049
Query: 1098 MKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFA 1157
+KRGG IY GPLG ES LI YFE++ G+ KI + YNPATWMLEVS S E LGVDFA
Sbjct: 1050 LKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFA 1109
Query: 1158 EIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQY 1217
++Y NS L++RN+ELIKELS P PGS +L+FPT+YSQ F TQ AS WKQ+WSYWRNP Y
Sbjct: 1110 QVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPY 1169
Query: 1218 NAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICV 1277
A+RFL T IA+ FG +FWD G K+ +QDL N +G+MY+ LFLG NA S PV+ V
Sbjct: 1170 TAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNV 1229
Query: 1278 ERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLIL 1337
ERTV+YRE+AAGM+SA+ YA QV +EI YV Q ++Y LI+
Sbjct: 1230 ERTVFYREQAAGMYSAMPYAFA------------------QVFIEIPYVLVQAIVYGLIV 1271
Query: 1338 YSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAG 1397
Y+MIGF+W KFF + +FM+ SF+ FT YGMM VA+TP +A++V S F +WNLF+G
Sbjct: 1272 YAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSG 1331
Query: 1398 FMIPR 1402
F+IPR
Sbjct: 1332 FLIPR 1336
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1698 bits (4397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1406 (60%), Positives = 1046/1406 (74%), Gaps = 61/1406 (4%)
Query: 8 DLARSFSVRGGQSISSGSHRSWASASIREVWNAPDNVFSRSERQ-DDEEELRWAAIERLP 66
D+ R SV G + SW S R + F RS R+ DDEE L+WAAIE+LP
Sbjct: 2 DIVRMGSVASGGGSVRRTASSWRGTSGRS------DAFGRSVREEDDEEALKWAAIEKLP 55
Query: 67 TYDRLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRT 126
TYDR++KG IL G V EVD+ LG+Q+++ L+E ++R EEDNERFL ++R R
Sbjct: 56 TYDRMRKG----ILTAGGV--EEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRM 109
Query: 127 DRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQI 186
+RVGI+ P IEVR+++LS+D + +VG+R +PT N N I L + +V S KR + I
Sbjct: 110 ERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISI 169
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L D+SGI++P RM+LLLGPPG+GKT+L+LALAGKL L+V S
Sbjct: 170 LHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKV------------------S 211
Query: 247 GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 306
G++TY GH+++EFVPQRT AYI QHDLH GEMTVRETL FS RC GVGTRY++L ELSRR
Sbjct: 212 GRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRR 271
Query: 307 EKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQK 366
EK+ IKPDP+ID +MKA++V GQE S+VTDY+LK+LGL+ICADTMVGD M RGISGGQK
Sbjct: 272 EKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQK 330
Query: 367 KRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426
KRVTTGEMLVG AK L MDEISTGLDSSTT+QI L+Q VHI+ T ++ALLQPAPETY
Sbjct: 331 KRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETY 390
Query: 427 DLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRK 486
DLFDDI+L+SEGQIVY GPR+N+LEFFE MGFKCPERKGVADFLQEVTS+KDQ QYW R+
Sbjct: 391 DLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRR 450
Query: 487 NQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACF 546
++PYRYI V+DF E FK FH+G+ L S+LRVP+D+++ HPAAL +YGISK EL +ACF
Sbjct: 451 DEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACF 510
Query: 547 AREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIM 606
+REWLLMKRNSFVYIFK QL + I MTVF RT+M +E G + GA+F L+ +
Sbjct: 511 SREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHL 570
Query: 607 FNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGF 666
FNG AEL+M++ +LP+FYKQRD LFYP+WA+ALP WVL+IP+S L+ +WI +TYY +GF
Sbjct: 571 FNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGF 630
Query: 667 APAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKD 726
P RFF+ Y+ I MA L+R +AA+GR V+ + G+FA L++ LGGF+I+++
Sbjct: 631 DPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRE 690
Query: 727 DIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDS 786
+I+ + WGY+ SP+MY Q +I V+EFL W+ D + + TLG +LK RG + D+
Sbjct: 691 NIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWN-KVVDPTQSNDTLGVQVLKVRGIFVDA 749
Query: 787 YWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRA--SGNEVE---- 840
WYWIG+GAL+G+ LFN LFI L +L+P+G + V EE+ +K +G VE
Sbjct: 750 NWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTL 809
Query: 841 GTQMTVRSSTEIVGEEE----NAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGED 896
GT S G E + +RGM+LPF PLS+TF+ + Y VDMP EMK +GV ED
Sbjct: 810 GTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTED 869
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETF 956
RL LL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI ISGYPKKQETF
Sbjct: 870 RLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETF 929
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
AR++GYCEQ DIHSPHVT+YESLLYSAWLRL S+VD++ RK+FV+EVMELVEL LR AL
Sbjct: 930 ARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGAL 989
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT
Sbjct: 990 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1049
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNP 1136
VVCTIHQPSIDIFEAFDEL LMKRGG IY GPLG S LI YFE + GV KIKD YNP
Sbjct: 1050 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNP 1109
Query: 1137 ATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPF 1196
ATWMLEV+ ++ E+ LG++FAE+Y NS L+QRN+ LI ELSTP PGS++LHFPT++SQPF
Sbjct: 1110 ATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPF 1169
Query: 1197 FTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAM 1256
FTQ A WKQ+ SYWRNP Y A R T IA+ FG +F + G+K +++ DL N LG+M
Sbjct: 1170 FTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSM 1229
Query: 1257 YSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLM 1316
Y+ LF+G N + P++ VERTV+YRE+AAGM+SAL YA
Sbjct: 1230 YAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFA----------------- 1272
Query: 1317 LQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTP 1376
QV +EI ++ QTV+Y LI+YS+IGF W + KFF + +FM+ +F+ FT YGMM VA+TP
Sbjct: 1273 -QVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTP 1331
Query: 1377 GQQVATIVLSFFLALWNLFAGFMIPR 1402
+A IV + F +WN+FAGF+IPR
Sbjct: 1332 NSDIAAIVSTAFYCIWNIFAGFLIPR 1357
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1690 bits (4377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 840/1386 (60%), Positives = 1036/1386 (74%), Gaps = 58/1386 (4%)
Query: 38 WNAPDNVFSRS-------ERQDDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVV---K 87
W+A + VFSRS + +DDEE LRWAA+E+LPTYDR+++ +L + E G K
Sbjct: 30 WSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGK 89
Query: 88 HEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDG 147
VDV LG Q+++ L+E ++R+ E+DNERFL +++ R DRVGI+IP IEVR++HL +
Sbjct: 90 KVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEAEA 149
Query: 148 DVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPG 207
+V VG+ LPT+LN N +E A L ++P+KK+ + IL DVSGIVKP RMTLLLGPPG
Sbjct: 150 EVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPG 209
Query: 208 AGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAY 267
+GKTTL+LALAG+L ++++ SG++TY GH++ +FVPQRT AY
Sbjct: 210 SGKTTLLLALAGRLGKDIKF------------------SGQVTYNGHQMEDFVPQRTAAY 251
Query: 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAV 327
ISQHDLH GEMTVRETL FS RC GVG+R+++L ELSRREK IKPD +IDAFMKA A+
Sbjct: 252 ISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAM 311
Query: 328 AGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEI 387
GQET+L+TDY+LK+LGLDICADTMVGD+M RGISGGQ+KRVTTGEMLVG A L MDEI
Sbjct: 312 EGQETNLITDYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEI 371
Query: 388 STGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRD 447
STGLDSSTTFQI K L+Q +HI+ T +++LLQPAPETYDLFDDIIL+S+GQIVY GPR+
Sbjct: 372 STGLDSSTTFQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE 431
Query: 448 NVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHM 507
VLEFFE MGFKCPERKGVADFLQEVTS+KDQ+QYW + ++PYRY+PV DF F+SFH
Sbjct: 432 GVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHT 491
Query: 508 GQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQL 567
G+ +A++L P+DKS+ HPAAL +YG+S EL +A RE+LLMKRNSFVYIF+ QL
Sbjct: 492 GKSIANELATPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQL 551
Query: 568 TFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQR 627
+S I MTVFFRT+M + G + GALFFS++ IMFNG++EL +T+ +LPVF+KQR
Sbjct: 552 MVVSAIAMTVFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQR 611
Query: 628 DHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMA 687
D LF+PAW + +P W+L+IP+S ++ ++ ++YY IGF P+A RFFKQYL I+ MA
Sbjct: 612 DLLFFPAWTYTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMA 671
Query: 688 LPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTS 747
L+RF+ R ++ N G+F LL+ LGGFI+ ++ ++ + WGY++SPMMY Q +
Sbjct: 672 AALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNA 731
Query: 748 ILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLF 807
I V+EFL WD + S++ TLG L+ RG + ++ WYWIG GAL+GF LFN LF
Sbjct: 732 ISVNEFLGHSWD-KVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLF 790
Query: 808 IAALTYLNPIGDSNSTVVEEDGDKKRA--SGNEVEGTQMTVRSSTEIVGEEENAP----- 860
ALTYL P G S +V EE+ +K+A +GN ++ M ++ IV E +
Sbjct: 791 TLALTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADN 850
Query: 861 ----RRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTAL 916
+RGM+LPF PLSLTF+ + Y VDMP EMK G+ EDRL+LL VSG+FRPGVLTAL
Sbjct: 851 SQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTAL 910
Query: 917 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976
MGVSGAGKTTLMDVLAGRKTGGYIEG+I ISGYPKKQETFARVSGYCEQ DIHSP VT+
Sbjct: 911 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVS 970
Query: 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA 1036
ESLL+SAWLRL DVD+ RK+F++EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA
Sbjct: 971 ESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA 1030
Query: 1037 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1096
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1031 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1090
Query: 1097 LMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDF 1156
LMKRGG IY GPLG +S +LI+YFE + GV +IKD YNPATWMLEVS IS E LGVDF
Sbjct: 1091 LMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDF 1150
Query: 1157 AEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQ 1216
+IY S L QRN+ LI+ELSTP PGSSEL+FPTKYS F Q A WK + SYWRNP
Sbjct: 1151 CDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPP 1210
Query: 1217 YNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVIC 1276
YNAIR T IA+ FG +FWD G K+ + QDL N +G+MYS LF+G N+ S PV+
Sbjct: 1211 YNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVS 1270
Query: 1277 VERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLI 1336
VERTV+YRERAAGM+SA YA G QVA+E Y Q+++Y +I
Sbjct: 1271 VERTVFYRERAAGMYSAFPYAFG------------------QVAIEFPYTLVQSIIYGII 1312
Query: 1337 LYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFA 1396
+YSMIGFKW KFF + +FM+ +F+ FT YGMM V LTP VA+IV S F +WNLF+
Sbjct: 1313 VYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFS 1372
Query: 1397 GFMIPR 1402
GF+IPR
Sbjct: 1373 GFIIPR 1378
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1689 bits (4374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1383 (60%), Positives = 1033/1383 (74%), Gaps = 54/1383 (3%)
Query: 37 VWNAPDNVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGML---NQILEDGKVVKHEVDV 92
+W D+VFSRS R+ DDEE LRWAA+E+LPTYDR+++ +L K VDV
Sbjct: 26 MWRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDV 85
Query: 93 THLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVG 152
LG ++++ L+E ++R+ +EDNE+FL +++ R DRVGI++P IEVR++HL + +V VG
Sbjct: 86 HGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVG 145
Query: 153 SRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTT 212
+ LPT+LN NT+E A L ++P++K+ + +L DVSGI+KP RMTLLLGPPG+GKTT
Sbjct: 146 NSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTT 205
Query: 213 LMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHD 272
L+LALAG+L ++L+ ASGK+TY GH + EFVP+RT AYISQHD
Sbjct: 206 LLLALAGRLGKDLK------------------ASGKVTYNGHGMEEFVPERTAAYISQHD 247
Query: 273 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQET 332
LH GEMTVRETL FS RC GVG+R+++L ELSRREK IKPD +IDAFMKA A+ GQE
Sbjct: 248 LHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEA 307
Query: 333 SLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
++ TDY+LK+LGL+ICADTMVGDEM RGISGGQ+KRVTTGEMLVG A+ L MDEISTGLD
Sbjct: 308 NVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLD 367
Query: 393 SSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEF 452
SSTTFQI L+Q VHI+ T +++LLQPAPETY+LFDDIIL+S+GQIVY GPR++VLEF
Sbjct: 368 SSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEF 427
Query: 453 FEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLA 512
FE MGFKCP+RKGVADFLQEVTSKKDQ QYW R ++PYR++ V +FV F+SFH G+ +A
Sbjct: 428 FESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIA 487
Query: 513 SDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSL 572
++L VP+DKS++HPAAL +YG EL +A RE LLMKRNSFVY+F+TFQL +SL
Sbjct: 488 NELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSL 547
Query: 573 ICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFY 632
I MT+FFRT+M + G Y GALFF +L IMFNG +EL++TV +LPVF+KQRD LFY
Sbjct: 548 IAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFY 607
Query: 633 PAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYR 692
PAW++ +P W+L+IP++ ++ ++ LTYY IGF FFKQYL I+ MA L+R
Sbjct: 608 PAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFR 667
Query: 693 FIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDE 752
FI R ++ N +F LL+ LGGFI+A++ ++ + WGY++SPMMY Q +I V+E
Sbjct: 668 FIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNE 727
Query: 753 FLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALT 812
+ W+ + NE TLG +LK RG + ++ WYWIG GA+IGF+ LFN LF ALT
Sbjct: 728 LMGHSWNKIVNSSASNE-TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALT 786
Query: 813 YLNPIGDSNSTVVEEDGDKKRASGN-EVEG--------TQMTVRSSTE----IVGEEENA 859
YL P G+S +V EE+ +KRA+ N E+ G T+ + + TE IV ++
Sbjct: 787 YLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEV 846
Query: 860 PRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGV 919
+RGM+LPF PLSL+F+ + Y VDMP EMK +GV +DRL+LL VSG+FRPGVLTALMGV
Sbjct: 847 TQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGV 906
Query: 920 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979
SGAGKTTLMDVLAGRKTGGYIEG I ISGYPKKQETFARVSGYCEQ DIHSP VT+YESL
Sbjct: 907 SGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESL 966
Query: 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1039
L+SAWLRL DVD+ RK+F++EVMELVELK LRDALVGLPGVNGLSTEQRKRLTIAVEL
Sbjct: 967 LFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVEL 1026
Query: 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL LMK
Sbjct: 1027 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMK 1086
Query: 1100 RGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEI 1159
RGG IYAGPLG S +LI+YFE++PGV KIKD YNPATWMLEV+ I E LGVDF++I
Sbjct: 1087 RGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDI 1146
Query: 1160 YANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNA 1219
Y S L+QRN+ LIK+LS P P SS+L+FPT+YSQ TQ A WKQ SYWRNP YNA
Sbjct: 1147 YKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNA 1206
Query: 1220 IRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVER 1279
+RF T IA+ FG +FWD G K ++ QDL N +G+MY+ LF+G N S PV+ VER
Sbjct: 1207 VRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVER 1266
Query: 1280 TVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYS 1339
TV+YRERAAGM+SA YA G QV +EI Y Q +Y +I+Y+
Sbjct: 1267 TVFYRERAAGMYSAFPYAFG------------------QVVIEIPYTLVQATVYGIIVYA 1308
Query: 1340 MIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFM 1399
MIGF+W KFF + +FM + + FT YGMM V LTP +A+IV S F A+WNLF+GF+
Sbjct: 1309 MIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFV 1368
Query: 1400 IPR 1402
IPR
Sbjct: 1369 IPR 1371
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1403 | ||||||
| 359481989 | 1434 | PREDICTED: pleiotropic drug resistance p | 0.939 | 0.919 | 0.743 | 0.0 | |
| 224069796 | 1463 | predicted protein [Populus trichocarpa] | 0.953 | 0.914 | 0.736 | 0.0 | |
| 356572530 | 1437 | PREDICTED: ABC transporter G family memb | 0.950 | 0.928 | 0.710 | 0.0 | |
| 359486907 | 1449 | PREDICTED: pleiotropic drug resistance p | 0.960 | 0.929 | 0.707 | 0.0 | |
| 147794195 | 1456 | hypothetical protein VITISV_025837 [Viti | 0.935 | 0.901 | 0.713 | 0.0 | |
| 255587046 | 1437 | ATP-binding cassette transporter, putati | 0.937 | 0.915 | 0.724 | 0.0 | |
| 359486909 | 1437 | PREDICTED: pleiotropic drug resistance p | 0.951 | 0.929 | 0.705 | 0.0 | |
| 449451112 | 1455 | PREDICTED: ABC transporter G family memb | 0.968 | 0.934 | 0.708 | 0.0 | |
| 449511856 | 1455 | PREDICTED: ABC transporter G family memb | 0.968 | 0.934 | 0.708 | 0.0 | |
| 359486942 | 1447 | PREDICTED: pleiotropic drug resistance p | 0.957 | 0.928 | 0.704 | 0.0 |
| >gi|359481989|ref|XP_002277172.2| PREDICTED: pleiotropic drug resistance protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2160 bits (5597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1016/1367 (74%), Positives = 1177/1367 (86%), Gaps = 49/1367 (3%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML Q+L++G+VV +VDVT L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 GMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRA 155
G+QDKKQLMESIL++VE+DNE+FL R+R RTDRVGIE PKIEVRY +LS++GDV+VGSRA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLML 215
LPTLLN LNTIE+ LGL+HL PSKKR +QILKDVSGIVKPSRMTLLLGPP +GKTTL+L
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 206
Query: 216 ALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHH 275
ALAGKL +L+V SGK+TYCGHEL+EF+PQRTCAYISQHDLHH
Sbjct: 207 ALAGKLDHDLKV------------------SGKVTYCGHELDEFIPQRTCAYISQHDLHH 248
Query: 276 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335
GEMTVRETLDFSGRCLGVGTRYE+LAELSRRE++ GIKPDPEIDAFMKA A++GQETSLV
Sbjct: 249 GEMTVRETLDFSGRCLGVGTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSGQETSLV 308
Query: 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
TDYVLK+LGLDICAD MVGD+MRRGISGGQKKRVTTGEMLVG AKVLLMDEISTGLDSST
Sbjct: 309 TDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSST 368
Query: 396 TFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQ 455
TFQI KF++QMVHIMDVTMI++LLQPAPETYDLFDDIIL+S+GQIVY GPR+NVLEFFE
Sbjct: 369 TFQIVKFMRQMVHIMDVTMIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEY 428
Query: 456 MGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDL 515
MGF+CPERKGVADFLQEVTSKKDQEQYW+++NQPY + V DFVE F SFH+GQQL+++L
Sbjct: 429 MGFRCPERKGVADFLQEVTSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQQLSAEL 488
Query: 516 RVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICM 575
VPYDK++THPAALV EKYGIS +ELF+ACFAREWLLMKRNSFVYIFKT Q+T MSLI +
Sbjct: 489 SVPYDKTRTHPAALVTEKYGISNYELFKACFAREWLLMKRNSFVYIFKTTQITIMSLIAL 548
Query: 576 TVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAW 635
TVF RT+M G L G K+FGALFFSL+N+MFNGMAEL+MTV RLPVF+KQRD LFYPAW
Sbjct: 549 TVFLRTQMPHGTLADGGKFFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDFLFYPAW 608
Query: 636 AFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIA 695
AFALPIWVLRIPLS ++S IWI+LTYYTIGFAPAASRFF+Q+LA+F IH MAL L+RFIA
Sbjct: 609 AFALPIWVLRIPLSFMESGIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIA 668
Query: 696 AIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLD 755
A+GRT+V+ N LGTF LL++F LGGFII+K+DIEPF+ WGYY+SPMMYGQ +I+++EFLD
Sbjct: 669 AVGRTQVVANTLGTFTLLMVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLD 728
Query: 756 GRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 815
RW P+ D NE T+GK LLK RGF+ D YW+WI + AL+ FS LFN LF+AALT+LN
Sbjct: 729 KRWAAPNTDSRFNEPTVGKVLLKSRGFFVDEYWFWICVVALLAFSLLFNVLFVAALTFLN 788
Query: 816 PIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTF 875
P+GD+ + ++ EGT M V +S+EIVG ENAP+RGM+LPF+PLSL F
Sbjct: 789 PLGDTKNAILN-------------EGTDMAVINSSEIVGSAENAPKRGMVLPFQPLSLAF 835
Query: 876 NQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935
+NY+VDMPAEMK++GV EDRLQLL VSGAFRPG+LTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 836 EHVNYFVDMPAEMKSQGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRK 895
Query: 936 TGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKK 995
TGGYIEG I ISGYPK Q+TFARVSGYCEQ DIHSP+VT++ESLLYSAWLRLSSDVDT+
Sbjct: 896 TGGYIEGSISISGYPKNQKTFARVSGYCEQNDIHSPYVTVHESLLYSAWLRLSSDVDTQT 955
Query: 996 RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
RK+FV+EVMELVELKPLRD+LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 956 RKMFVEEVMELVELKPLRDSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1015
Query: 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESH 1115
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIYAGPLGR SH
Sbjct: 1016 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSH 1075
Query: 1116 KLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKE 1175
KL+EYFEA+PGVPKIK+ NPATWML VS SVE Q+ VDFAEIYANSSL+QRNQELIKE
Sbjct: 1076 KLVEYFEAIPGVPKIKEGSNPATWMLVVSASSVEAQMEVDFAEIYANSSLYQRNQELIKE 1135
Query: 1176 LSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLL 1235
LSTP P S +L+FPT++SQPF TQ KA FWKQ+WSYWRNPQYNAIRF MT I FG++
Sbjct: 1136 LSTPPPASKDLYFPTEFSQPFSTQCKACFWKQHWSYWRNPQYNAIRFFMTIVIGALFGVI 1195
Query: 1236 FWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALS 1295
FW+KG+++++QQDL NLLGAMY+ LFLG TNA + ++ +ERTV+YRERAAGM+S L
Sbjct: 1196 FWNKGEQTTKQQDLMNLLGAMYAAVLFLGATNASAVQSIVAIERTVFYRERAAGMYSPLP 1255
Query: 1296 YALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFY 1355
YA QV++E IYV QT++Y L+LYSMIGF W++GKF F+Y
Sbjct: 1256 YAFA------------------QVSIEAIYVAIQTIVYTLLLYSMIGFDWKVGKFLWFYY 1297
Query: 1356 FMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPR 1402
++ F+ FT+YGMM+VALTPG Q+A IV+SFFL+ WNLF+GF+IPR
Sbjct: 1298 YILMCFIYFTMYGMMVVALTPGHQIAAIVMSFFLSFWNLFSGFLIPR 1344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069796|ref|XP_002326416.1| predicted protein [Populus trichocarpa] gi|222833609|gb|EEE72086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2108 bits (5462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1018/1382 (73%), Positives = 1172/1382 (84%), Gaps = 44/1382 (3%)
Query: 29 WASASIREVWNAPDNVFS-----RSERQDDEEELRWAAIERLPTYDRLKKGMLNQILEDG 83
WASASIRE W AP +VFS R ++ DDEEELRWAAIERLPTYDR++KG+L Q+L++G
Sbjct: 27 WASASIREAWTAPVDVFSQNSGRRQQQMDDEEELRWAAIERLPTYDRMRKGVLRQVLDNG 86
Query: 84 KVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHL 143
++V+ EVDVT LGMQDKKQLME+ILR+VEEDNE+FL R+R RTDRVGIEIPKIEVR+ HL
Sbjct: 87 RMVQSEVDVTRLGMQDKKQLMENILRVVEEDNEKFLRRVRDRTDRVGIEIPKIEVRFQHL 146
Query: 144 SVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLL 203
SV+G+V VGSRALPTLLN LN +ES LGL+ L PSKKR VQIL+D+SGIVKPSRM LLL
Sbjct: 147 SVEGEVFVGSRALPTLLNATLNAVESILGLVGLAPSKKRTVQILQDISGIVKPSRMALLL 206
Query: 204 GPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263
GPP +GKTT+++ALAGKLH LR +SGKITYCGHEL EFVPQR
Sbjct: 207 GPPSSGKTTMLMALAGKLHRELR------------------SSGKITYCGHELKEFVPQR 248
Query: 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMK 323
+CAYISQHDLH+GEMTVRETLDFSGRCLGVGTRYELLAELSRREK+ GIKPDPEIDAFMK
Sbjct: 249 SCAYISQHDLHYGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMK 308
Query: 324 AVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLL 383
A A++GQE SLVTDY LK+LGLDICAD +VG++M+RGISGGQKKRVTTGEMLVG AKVLL
Sbjct: 309 ATAMSGQEHSLVTDYTLKILGLDICADILVGNDMKRGISGGQKKRVTTGEMLVGPAKVLL 368
Query: 384 MDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYH 443
MDEISTGLDS+TTFQICKF++QMVH MDVTMIV+LLQPAPET++LFDDIIL+SEGQ+VY
Sbjct: 369 MDEISTGLDSATTFQICKFMRQMVHTMDVTMIVSLLQPAPETFELFDDIILLSEGQVVYQ 428
Query: 444 GPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFK 503
GPR++VLEFFE MGF+CP+RKG ADFLQEVTSKKDQEQYWFRKN PYR+I V +FV GF
Sbjct: 429 GPREHVLEFFEHMGFRCPDRKGAADFLQEVTSKKDQEQYWFRKNIPYRFISVLEFVRGFN 488
Query: 504 SFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFK 563
SFH+GQQLASDLR PYDKS+ HPAALV EKYGIS WELFRACF+REWLLMKRNSF+YIFK
Sbjct: 489 SFHVGQQLASDLRTPYDKSRAHPAALVTEKYGISNWELFRACFSREWLLMKRNSFLYIFK 548
Query: 564 TFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVF 623
T Q+T MS+I TVFFRTEM VG + GG K+FGALFFSL+N+MFNGMAELSMTV RLPVF
Sbjct: 549 TTQITIMSIIAFTVFFRTEMKVGTVLGGQKFFGALFFSLVNVMFNGMAELSMTVFRLPVF 608
Query: 624 YKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCI 683
YKQRD LF+PAWAF LPIWVLRIPLSL++S IWI++TYYTIGFAP+ASRFF+Q+LA+FCI
Sbjct: 609 YKQRDFLFFPAWAFGLPIWVLRIPLSLMESAIWIIITYYTIGFAPSASRFFRQFLAFFCI 668
Query: 684 HNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMY 743
H MAL L+RFIAA+GRT+V+ N LGTF LLL+F LGGFI+AKDDIEP++ WGYY SPMMY
Sbjct: 669 HQMALALFRFIAAVGRTQVVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYSSPMMY 728
Query: 744 GQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLF 803
GQ +I+++EFLD RW V + D + T+GK LLK RGF+ D YW+WI IGAL GFS LF
Sbjct: 729 GQNAIVMNEFLDERWSVNNTDSNFAGETVGKVLLKARGFFTDDYWFWICIGALFGFSLLF 788
Query: 804 NFLFIAALTYLNPIGDSNSTVVEEDG--DKKRASGNE-VEGTQMTVRSSTEIVGEEENAP 860
N LFI ALT+LNP+GDS + VV++D +KK +SG + EG M R+STEI G +N+
Sbjct: 789 NVLFIVALTFLNPLGDSKAVVVDDDAKKNKKTSSGQQRAEGIPMATRNSTEIGGAVDNST 848
Query: 861 RRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVS 920
+RGM+LPF+PLSL FN ++YYVDMP EMK++G+ E+RLQLL VSGAFRPG+LTAL+GVS
Sbjct: 849 KRGMVLPFQPLSLAFNHVSYYVDMPDEMKSQGIDEERLQLLRDVSGAFRPGILTALVGVS 908
Query: 921 GAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980
GAGKTTLMDVLAGRKTGGYIEG I ISGYPK QETFARVSGYCEQ DIHSP VT+YESLL
Sbjct: 909 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCEQNDIHSPRVTVYESLL 968
Query: 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV 1040
YSAWLRLS D+DTK RK+FV+EVMELVEL PLRDALVGLPG++GLSTEQRKRLTIAVELV
Sbjct: 969 YSAWLRLSKDIDTKTRKMFVEEVMELVELNPLRDALVGLPGLDGLSTEQRKRLTIAVELV 1028
Query: 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR
Sbjct: 1029 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1088
Query: 1101 GGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIY 1160
GG+VIYAG LG SHKLIEYFEAVPGVPKI+DAYNPATWMLE+S S+E QL VDFAE Y
Sbjct: 1089 GGQVIYAGSLGHRSHKLIEYFEAVPGVPKIRDAYNPATWMLEISAPSMEAQLDVDFAEQY 1148
Query: 1161 ANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAI 1220
ANSSL+QRNQE+IKELSTP PGS +L+F T+YSQ F TQ KA FWKQ+WSYWRNP+YNAI
Sbjct: 1149 ANSSLYQRNQEIIKELSTPAPGSKDLYFRTQYSQTFLTQCKACFWKQHWSYWRNPRYNAI 1208
Query: 1221 RFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERT 1280
R MT I I FGL+FWDKGQK+ QQDL N+ GAMY+ LFLG TNA +I +ERT
Sbjct: 1209 RLFMTLAIGIIFGLIFWDKGQKTFSQQDLLNVFGAMYAAVLFLGATNAAGVQSIIAIERT 1268
Query: 1281 VYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSM 1340
V+YRERAAGM+S L YA QVA+E IYV QT++Y ++L+SM
Sbjct: 1269 VFYRERAAGMYSPLPYAFA------------------QVAIEAIYVAVQTIVYSILLFSM 1310
Query: 1341 IGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMI 1400
+GF+W KF F+YF++ FV FTL+GMM+VALTP Q+A I +SFF + WNLF+GF++
Sbjct: 1311 MGFEWTAAKFLWFYYFIFMCFVYFTLFGMMVVALTPAPQIAAICMSFFTSFWNLFSGFLL 1370
Query: 1401 PR 1402
PR
Sbjct: 1371 PR 1372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572530|ref|XP_003554421.1| PREDICTED: ABC transporter G family member 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2097 bits (5432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1386 (71%), Positives = 1157/1386 (83%), Gaps = 52/1386 (3%)
Query: 20 SISSGSHRSWASASIREVWNAPDNVFSRSER---QDDEEELRWAAIERLPTYDRLKKGML 76
++S+ S RSW +AS R+ W A +VF+ S R +DDEEEL+WAAI+RLPT++R++KG+L
Sbjct: 11 AVSTSSRRSWTTASFRDAWTAAPDVFNVSGRHVYEDDEEELKWAAIDRLPTFERMRKGVL 70
Query: 77 NQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKI 136
+L+DG V+ EVDV++L + DKK L++SIL+IVEEDNE+FL R+R+R DRVGIEIPKI
Sbjct: 71 KHVLDDGHVMLDEVDVSNLCLHDKKLLIDSILKIVEEDNEKFLRRLRNRVDRVGIEIPKI 130
Query: 137 EVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKP 196
EVR ++LSV+GDVHVGSRALPTLLN LN ES LG+ HL PSKKR++QILKDVSGIVKP
Sbjct: 131 EVRCENLSVEGDVHVGSRALPTLLNATLNAFESVLGMFHLAPSKKREIQILKDVSGIVKP 190
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL 256
SRMTLLLGPP +GKTTL+LALAGKL +LRV SG+ITYCGHEL
Sbjct: 191 SRMTLLLGPPSSGKTTLLLALAGKLDRDLRV------------------SGRITYCGHEL 232
Query: 257 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDP 316
NEFVPQ+TCAYISQHD+H+GEMTVRETLDFSGRCLGVGTRYE L ELSRRE++ GIKPDP
Sbjct: 233 NEFVPQKTCAYISQHDIHYGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDP 292
Query: 317 EIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 376
EIDAFMKA+A++GQ+T+LVTDYVLK+LGLDICAD +VGDEMRRGISGGQKKRVTTGEMLV
Sbjct: 293 EIDAFMKAIALSGQKTNLVTDYVLKILGLDICADIVVGDEMRRGISGGQKKRVTTGEMLV 352
Query: 377 GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILIS 436
G AK L MDEISTGLDSSTTFQICKF++QMVH+MDVTM+++LLQPAPET++LFDDIIL+S
Sbjct: 353 GPAKALFMDEISTGLDSSTTFQICKFMRQMVHVMDVTMVISLLQPAPETFELFDDIILLS 412
Query: 437 EGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVS 496
EGQIVY GPR+N LEFFE MGFKCPERKGV DFLQEVTSKKDQ+QYW RK++PYRY+ VS
Sbjct: 413 EGQIVYQGPRENGLEFFEHMGFKCPERKGVTDFLQEVTSKKDQQQYWSRKDEPYRYVSVS 472
Query: 497 DFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRN 556
+FV+ F SF +G+QLA++L VPYDK Q HPAALVK+KYGI+ WELF+ACF+REWLLMKR+
Sbjct: 473 EFVQAFSSFDIGEQLATELGVPYDKRQAHPAALVKDKYGITNWELFKACFSREWLLMKRS 532
Query: 557 SFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMT 616
SFVYIFKT Q+T MS+I TVF RTEMSVG +E G K+FGALFFSL+N+MFNGMAELSMT
Sbjct: 533 SFVYIFKTTQITIMSIITFTVFLRTEMSVGTVEDGQKFFGALFFSLINVMFNGMAELSMT 592
Query: 617 VLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQ 676
V RLPVFYKQRD FYPAWAF LPIW+LRIPLS+++S IWI LTYYTIGFAP+ASRF +Q
Sbjct: 593 VFRLPVFYKQRDFRFYPAWAFGLPIWLLRIPLSIMESGIWIALTYYTIGFAPSASRFIRQ 652
Query: 677 YLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGY 736
+LA F IH MAL L+RF+AA GRT V+ N LGT +L L+F LGGF+IAKDDIEP++ WGY
Sbjct: 653 FLALFAIHQMALSLFRFLAAAGRTLVVANTLGTLSLQLVFVLGGFVIAKDDIEPWMMWGY 712
Query: 737 YVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGAL 796
Y+SPMMYGQ +I+++EFLD RW P+ D IN T+GK LLK RGFY + YW+WI IGAL
Sbjct: 713 YLSPMMYGQNAIVMNEFLDKRWSKPNTDPRINAPTVGKVLLKSRGFYTEEYWFWICIGAL 772
Query: 797 IGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEE 856
+GFS LFN LFI ALTYLNP+G S + + + EGT M V+ S+E+
Sbjct: 773 LGFSLLFNLLFIVALTYLNPLGYSKAVIAD-------------EGTDMAVKESSEMASSL 819
Query: 857 ENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTAL 916
PRRGM+LPF+PLSL FN ++YYVDMPAEM++ G+ +DRLQLL VSGAFRPG+LTAL
Sbjct: 820 NQEPRRGMVLPFQPLSLAFNHISYYVDMPAEMRSRGINKDRLQLLQDVSGAFRPGILTAL 879
Query: 917 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976
+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q TFAR+SGYCEQ DIHSPHVT+Y
Sbjct: 880 VGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPHVTVY 939
Query: 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA 1036
ESLL+SAWLRL SDV+ +KRK+FV+EVMELVEL +RDALVGLPGV+GLSTEQRKRLTIA
Sbjct: 940 ESLLFSAWLRLPSDVNAQKRKMFVEEVMELVELNQIRDALVGLPGVDGLSTEQRKRLTIA 999
Query: 1037 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1096
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE+L
Sbjct: 1000 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEIL 1059
Query: 1097 LMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDF 1156
LMKRGG+VIYAGPLGR SHKLIEYFE +PGVPKIKD YNPA+WML++S+ ++E L VDF
Sbjct: 1060 LMKRGGQVIYAGPLGRHSHKLIEYFEGIPGVPKIKDGYNPASWMLDISSTTMEANLEVDF 1119
Query: 1157 AEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQ 1216
AEIYA S+L++RNQELI+ELSTP P S +LHFPTKYSQ FF Q KA+FWKQYWSYWR PQ
Sbjct: 1120 AEIYAKSTLYRRNQELIEELSTPVPDSKDLHFPTKYSQSFFVQCKANFWKQYWSYWRYPQ 1179
Query: 1217 YNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVIC 1276
YNA+RF MT + + FG++FW+K +K+ +QQDL NLLG MY+ LFLG NA S PV+
Sbjct: 1180 YNAVRFFMTIVVGVMFGVIFWNKAKKTHKQQDLMNLLGGMYAAMLFLGAMNASSVQPVVA 1239
Query: 1277 VERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLI 1336
+ERT++YRERAAGM+SAL YA G QVA+E IY QT +Y LI
Sbjct: 1240 IERTIFYRERAAGMYSALPYAFG------------------QVAIEAIYNAIQTAVYSLI 1281
Query: 1337 LYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFA 1396
LYSMIGF W+ FF F+Y++ F+ FTLYGMMIVALTPG QVA I +SFFL+ WNLF+
Sbjct: 1282 LYSMIGFDWKATSFFWFYYYILMCFMYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFS 1341
Query: 1397 GFMIPR 1402
GF+IPR
Sbjct: 1342 GFIIPR 1347
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486907|ref|XP_002267345.2| PREDICTED: pleiotropic drug resistance protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2091 bits (5418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1393 (70%), Positives = 1169/1393 (83%), Gaps = 46/1393 (3%)
Query: 11 RSFSVRGGQSISSGSHRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGS RSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVG 130
L+KGML Q+L+DGKVV EVD T+LGMQ++K L+ESIL++VEEDNE+FL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDV 190
+EIPKIEVR++HLSV+GD +VG+RALPTLLN +N IE LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKIT 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ ++LR+ GKIT
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRME------------------GKIT 231
Query: 251 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQ 310
YCGHEL+EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK+
Sbjct: 232 YCGHELSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKES 291
Query: 311 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVT 370
IKPDPEIDAFMKA A+AGQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVT
Sbjct: 292 AIKPDPEIDAFMKATAMAGQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVT 351
Query: 371 TGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430
TGEMLVG AK L MDEISTGLDSSTTFQI KF++QMVHIM+VTMI++LLQPAPETYDLFD
Sbjct: 352 TGEMLVGPAKALFMDEISTGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFD 411
Query: 431 DIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPY 490
IIL+ EGQIVY GPR+N+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY
Sbjct: 412 AIILLCEGQIVYQGPRENILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPY 471
Query: 491 RYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREW 550
+YI V +F + F SFH+GQ+L+ DL +PY+KS+THPAALV EKYGIS WELF+ACFAREW
Sbjct: 472 KYISVPEFAQHFNSFHIGQKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREW 531
Query: 551 LLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGM 610
LLMKRNSF+YIFKT Q+T MS+I MTVFFRTEM G L+ G K++GALF+SL+N+MFNGM
Sbjct: 532 LLMKRNSFIYIFKTTQITIMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGM 591
Query: 611 AELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAA 670
AEL++T+ RLPVF+KQRD LFYPAWAFALPIWVLRIPLSL++S IWI+LTYYTIGFAP+A
Sbjct: 592 AELALTLFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSA 651
Query: 671 SRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEP 730
SRFF+Q LA+F +H MAL L+RFIAA+GRT+++ N LGTF LLL+F LGGFI+AKDDIEP
Sbjct: 652 SRFFRQLLAFFGVHQMALSLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEP 711
Query: 731 FLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYW 790
++ WGYY SPM YGQ +++++EFLD RW P+ D+ I E T+GKALLK RG + D YWYW
Sbjct: 712 WMIWGYYASPMTYGQNALVINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYW 771
Query: 791 IGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSST 850
I +GAL+GFS LFN FI ALTYL+P+GDS S +++E+ ++K Q T S+
Sbjct: 772 ICVGALMGFSLLFNICFIVALTYLDPLGDSKSVIIDEENEEKSEK-------QKTRESTK 824
Query: 851 EIVGEEENAP-RRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFR 909
+V + + P +RGM+LPF+PLSL F +NYYVDMPA MK++G+ DRLQLL SGAFR
Sbjct: 825 SVVKDANHTPTKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFR 884
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIH 969
PG+ AL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q TFAR+SGYCEQ DIH
Sbjct: 885 PGIQIALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIH 944
Query: 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029
SP+VT+YESL+YSAWLRL+ DV + R++FV+EVMELVEL PLRDALVGLPG++GLSTEQ
Sbjct: 945 SPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQ 1004
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1089
RKRLT+AVELVANPSI+FMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIF
Sbjct: 1005 RKRLTVAVELVANPSILFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 1064
Query: 1090 EAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVE 1149
EAFDELLLMKRGG++IYAG LGR SHKL+EYFEAVPGVPK++D NPATWMLE+S+ +VE
Sbjct: 1065 EAFDELLLMKRGGQIIYAGALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVE 1124
Query: 1150 NQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYW 1209
QLGVDFAEIYA S L+QRNQELIKELSTP PGS +L+FPTKYSQ F +Q KA FWKQ+W
Sbjct: 1125 AQLGVDFAEIYAKSELYQRNQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHW 1184
Query: 1210 SYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAV 1269
SYWRNP YNAIRF +T I + FG++FW+KG+K+ ++QDL NLLGAM+S FLG TN
Sbjct: 1185 SYWRNPPYNAIRFFLTIIIGVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTS 1244
Query: 1270 SAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQ 1329
S PV+ +ERTV+YRERAAGM+SAL YA QVA+E IYV Q
Sbjct: 1245 SVQPVVAIERTVFYRERAAGMYSALPYAFA------------------QVAIEAIYVAIQ 1286
Query: 1330 TVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFL 1389
T++Y L+LYSM+GF W + KF F+Y++ F+ FTLYGMMIVALTP Q+A IV+SFFL
Sbjct: 1287 TLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAIVMSFFL 1346
Query: 1390 ALWNLFAGFMIPR 1402
+ WNLFAGF+IPR
Sbjct: 1347 SFWNLFAGFLIPR 1359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147794195|emb|CAN77838.1| hypothetical protein VITISV_025837 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2089 bits (5412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 996/1395 (71%), Positives = 1159/1395 (83%), Gaps = 83/1395 (5%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML Q+L++G+VV +VDVT L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 GMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRA 155
G+QDKKQLMESIL++VE+DNE+FL R+R RTDRVGIE PKIEVRY++LS++GDV+VGSRA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLXRLRDRTDRVGIETPKIEVRYENLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPS------------------ 197
LPTLLN LNTIE+ LGL+HL PSKKR +QILKDVSGIVKP
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPFKMVFIFCLAMAFTHHFLI 206
Query: 198 ------RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY 251
RMTLLLGPP +GKTTL+LALAGKL +L+V SGK+TY
Sbjct: 207 FDMVIFRMTLLLGPPSSGKTTLLLALAGKLDHDLKV------------------SGKVTY 248
Query: 252 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQG 311
CGHEL+EF+PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE+LAELSRRE++ G
Sbjct: 249 CGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEMLAELSRREREAG 308
Query: 312 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTT 371
IKPDPEIDAFMKA A++GQETSLVTDYVLK+LGLDICAD MVGD+MRRGISGGQKKRVTT
Sbjct: 309 IKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTT 368
Query: 372 GEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431
GEMLVG AKVLLMDEIS + F C QPAPETYDLFDD
Sbjct: 369 GEMLVGPAKVLLMDEISYRVGQFHHFPDC-------------------QPAPETYDLFDD 409
Query: 432 IILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYR 491
IIL+S+GQIVY GPR+NVLEFFE MGF+CPERKGVADFLQEVTSKKDQEQYW+++NQPY
Sbjct: 410 IILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQEVTSKKDQEQYWYKRNQPYT 469
Query: 492 YIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWL 551
+ V DFVE F SFH+GQQL+++L VPYDK++THPAALV EKYGIS +ELF+ACFAREWL
Sbjct: 470 HASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTEKYGISNYELFKACFAREWL 529
Query: 552 LMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMA 611
LMKRNSFVYIFKT Q+T MSLI +TVF RT+M G L G K+FGALFFSL+N+MFNGMA
Sbjct: 530 LMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGGKFFGALFFSLINVMFNGMA 589
Query: 612 ELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAAS 671
EL+MTV RLPVF+KQRD LFYPAWAFA+PIWVLRIPLS ++S IWI+LTYYTIGFAPAAS
Sbjct: 590 ELAMTVFRLPVFFKQRDFLFYPAWAFAMPIWVLRIPLSFMESGIWIILTYYTIGFAPAAS 649
Query: 672 RFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPF 731
RFF+Q+LA+F IH MAL L+RFIAA+GRT+V+ N LGTF LL++F LGGFII+K+DIEPF
Sbjct: 650 RFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTLLMVFVLGGFIISKNDIEPF 709
Query: 732 LEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWI 791
+ WGYY+SPMMYGQ +I+++EFLD RW P+ D NE T+GK LLK RGF+ D YW+WI
Sbjct: 710 MIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRFNEPTVGKVLLKSRGFFVDEYWFWI 769
Query: 792 GIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDK---KRASG-NEVEGTQMTVR 847
+ AL+ FS LFN LF+AALT+LNP+GD+ + ++ E+ DK K +SG + EGT M V
Sbjct: 770 CVXALLAFSLLFNVLFVAALTFLNPLGDTKNAILNEEDDKNKNKASSGQHSTEGTDMAVI 829
Query: 848 SSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGA 907
+S+EIVG ENAP+RGM+LPF+PLSL F +NY+VDMPAEMK++GV EDRLQLL VSGA
Sbjct: 830 NSSEIVGSAENAPKRGMVLPFQPLSLAFEHVNYFVDMPAEMKSQGVEEDRLQLLRDVSGA 889
Query: 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q+TFARVSGYCEQ D
Sbjct: 890 FRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQKTFARVSGYCEQND 949
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
IHSP+VT++ESLLYSAWLRLSSDVDT+ RK+FV+EVMELVELKPLRD+LVGLPGV+GLST
Sbjct: 950 IHSPYVTVHESLLYSAWLRLSSDVDTQTRKMFVEEVMELVELKPLRDSLVGLPGVDGLST 1009
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1087
EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID
Sbjct: 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1069
Query: 1088 IFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNIS 1147
IFEAFDELLLMKRGG+VIYAGPLGR SHKL+EYFEA+PGVPKIK+ NPATWML VS S
Sbjct: 1070 IFEAFDELLLMKRGGQVIYAGPLGRHSHKLVEYFEAIPGVPKIKEGSNPATWMLVVSASS 1129
Query: 1148 VENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQ 1207
VE Q+ VDFAEIYANSSL+QRNQELIKELSTP P S +L+FPT++SQPF TQ KA FWKQ
Sbjct: 1130 VEAQMEVDFAEIYANSSLYQRNQELIKELSTPPPXSKDLYFPTEFSQPFSTQCKACFWKQ 1189
Query: 1208 YWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTN 1267
+WSYWRNPQYNAIRF MT I FG++FW+KG+++++QQDL NLLGAMY+ LFLG TN
Sbjct: 1190 HWSYWRNPQYNAIRFFMTIVIGALFGVIFWNKGEQTTKQQDLMNLLGAMYAAVLFLGATN 1249
Query: 1268 AVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVT 1327
A + ++ +ERTV+YRERAAGM+S L YA QV++E IYV
Sbjct: 1250 ASAVQSIVAIERTVFYRERAAGMYSPLPYAFA------------------QVSIEAIYVA 1291
Query: 1328 AQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSF 1387
QT++Y L+LYSMIGF W++GKF F+Y++ F+ FT+YGMM+VALTPG Q+A IV+SF
Sbjct: 1292 IQTIVYTLLLYSMIGFDWKVGKFLWFYYYILMCFIYFTMYGMMVVALTPGHQIAAIVMSF 1351
Query: 1388 FLALWNLFAGFMIPR 1402
FL+ WNLF+GF+IPR
Sbjct: 1352 FLSFWNLFSGFLIPR 1366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587046|ref|XP_002534113.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223525836|gb|EEF28273.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2089 bits (5412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1367 (72%), Positives = 1155/1367 (84%), Gaps = 51/1367 (3%)
Query: 38 WNAPDNVFSRSERQDDEEELR-WAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHLG 96
W + + VF+RS+R++++EE WAAIERLPTY R++KGML Q+L++G V++ EVD+ LG
Sbjct: 30 WTSGNGVFNRSQRREEDEEELRWAAIERLPTYRRMRKGMLRQVLDNGSVIESEVDLRKLG 89
Query: 97 MQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRAL 156
+QDKK+LMESIL+ E+DNE+FLTR+R R DRVGI+IPKIEVR++HLSV GDVHVGSRAL
Sbjct: 90 LQDKKKLMESILKDAEDDNEKFLTRLRERADRVGIDIPKIEVRFEHLSVGGDVHVGSRAL 149
Query: 157 PTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLA 216
PTLLN LN++E+ LGL+ L PSKKR +QIL+D+SGIV+PSRMTLLLGPPGAGKTTL+LA
Sbjct: 150 PTLLNATLNSVETVLGLIGLAPSKKRRIQILQDLSGIVRPSRMTLLLGPPGAGKTTLLLA 209
Query: 217 LAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHG 276
LAGKL ++LR GKITYCGHEL+EF+PQRTCAYISQHD+HHG
Sbjct: 210 LAGKLDQDLR------------------KLGKITYCGHELHEFIPQRTCAYISQHDVHHG 251
Query: 277 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336
EMTVRET DFSGRCLGVGTRYE+LAELSRREK GIKPD EIDAFMKA A++GQ+TSLVT
Sbjct: 252 EMTVRETFDFSGRCLGVGTRYEMLAELSRREKASGIKPDSEIDAFMKATALSGQKTSLVT 311
Query: 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT 396
DYVLKLLGLDICAD +VGD+MRRGISGGQKKRVTTGEMLVG AKVLLMDEISTGLDSSTT
Sbjct: 312 DYVLKLLGLDICADIVVGDQMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTT 371
Query: 397 FQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
FQIC+F++QMVHIMD+TMI++LLQPAPET++LFDD+IL+S+GQIVY GPR+N+LEFFE M
Sbjct: 372 FQICRFMRQMVHIMDITMIISLLQPAPETFELFDDVILLSDGQIVYQGPRENILEFFEYM 431
Query: 457 GFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLR 516
GF+CPERKGVADFLQEVTSKKDQEQYW++K+QPY +I V DFV+GF SFH+GQQLASDL
Sbjct: 432 GFRCPERKGVADFLQEVTSKKDQEQYWYKKDQPYSFISVPDFVQGFSSFHIGQQLASDLS 491
Query: 517 VPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMT 576
VPY+KS+ HPAALV +KYGIS WELF+ACF+REWLLMKRNSFVYIFKT Q+T MS+I T
Sbjct: 492 VPYNKSRAHPAALVMDKYGISNWELFKACFSREWLLMKRNSFVYIFKTVQITIMSIIAFT 551
Query: 577 VFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWA 636
VF RTEM VG + G K++GALFFSL+N+MFNGMAEL++T+ RLPV++KQRD LFYPAWA
Sbjct: 552 VFLRTEMKVGTVADGQKFYGALFFSLINVMFNGMAELALTMFRLPVYFKQRDFLFYPAWA 611
Query: 637 FALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAA 696
FALPIWVLRIPLS L+S IWI+LTYYTIGFAPAASRFF+Q+L +F IH MAL L+RFIAA
Sbjct: 612 FALPIWVLRIPLSFLESGIWILLTYYTIGFAPAASRFFRQFLTFFGIHQMALSLFRFIAA 671
Query: 697 IGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDG 756
+GRTE++ N LGTF LLL+F LGGFIIA++DI P++ WGYYVSPMMYGQ +I+++EFLD
Sbjct: 672 VGRTEIVANTLGTFTLLLVFVLGGFIIAREDIAPWMIWGYYVSPMMYGQNAIVMNEFLDE 731
Query: 757 RWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNP 816
RW P+ D I+ T+GK LLK RGF+ D YW+WI +GAL GFS LFN LFIAALT+LNP
Sbjct: 732 RWSAPNPDPRIDAPTVGKVLLKARGFFTDDYWFWICVGALFGFSLLFNILFIAALTFLNP 791
Query: 817 IGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEE-NAPRRGMILPFRPLSLTF 875
+G+S +V+ EGT M VR+S++ VG E +RGM+LPF+PLSL F
Sbjct: 792 LGNSKGHIVD-------------EGTDMAVRNSSDGVGAERLMTSKRGMVLPFQPLSLAF 838
Query: 876 NQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935
N +NYYVDMPAEMK EGV E RLQLL VSG+FRPG+LTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 839 NLVNYYVDMPAEMKKEGVQEKRLQLLRDVSGSFRPGILTALVGVSGAGKTTLMDVLAGRK 898
Query: 936 TGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKK 995
T GYI+G I ISGYPK Q TFARVSGYCEQ DIHSPHVT+YESLLYSAWLRLS DVDTK
Sbjct: 899 TTGYIDGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLYSAWLRLSKDVDTKM 958
Query: 996 RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
RK+F++E+M+LVEL P+RDALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 959 RKMFIEEIMDLVELDPIRDALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
Query: 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESH 1115
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIYAGPLGR SH
Sbjct: 1019 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRFSH 1078
Query: 1116 KLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKE 1175
KLIEYFEA+PGVPKIKD YNPATWML++S S+E QL VDFAEIY NSSL+QRNQELIKE
Sbjct: 1079 KLIEYFEAIPGVPKIKDGYNPATWMLDISTSSMETQLNVDFAEIYVNSSLYQRNQELIKE 1138
Query: 1176 LSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLL 1235
LS P GS +L+ PTKYSQ F Q KA FWK +WSYWRNPQYNAIRF +T I FGL+
Sbjct: 1139 LSIPPSGSKDLYLPTKYSQSFLVQCKACFWKHHWSYWRNPQYNAIRFFLTVIIGTLFGLI 1198
Query: 1236 FWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALS 1295
FW+KGQK +QQDL NLLGA+YS FLG N S PV+ +ERTV+YRERAAGM+SAL
Sbjct: 1199 FWNKGQKIGKQQDLMNLLGAIYSAVFFLGACNTSSVQPVVAIERTVFYRERAAGMYSALP 1258
Query: 1296 YALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFY 1355
YA QVA+E+IY+ QTV+Y LIL+SMIGF+W++GKF FFY
Sbjct: 1259 YAFA------------------QVAIEVIYIAIQTVVYTLILFSMIGFEWKVGKFLWFFY 1300
Query: 1356 FMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPR 1402
F++ SFV FTLYGMM+VALTP Q+A IV+SFF++LWN+F GF+IPR
Sbjct: 1301 FLFMSFVYFTLYGMMVVALTPNHQIAAIVMSFFISLWNMFTGFIIPR 1347
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486909|ref|XP_003633487.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2084 bits (5399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1393 (70%), Positives = 1165/1393 (83%), Gaps = 58/1393 (4%)
Query: 11 RSFSVRGGQSISSGSHRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGS RSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVG 130
L+KGML Q+L+DGKVV EVD T+LGMQ++K L+ESIL++VEEDNE+FL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDV 190
+EIPKIEVR++HLSV+GD +VG+RALPTLLN +N IE LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKIT 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ ++LR+ GKIT
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRME------------------GKIT 231
Query: 251 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQ 310
YCGHEL+EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK+
Sbjct: 232 YCGHELSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKES 291
Query: 311 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVT 370
IKPDPEIDAFMKA A+AGQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVT
Sbjct: 292 AIKPDPEIDAFMKATAMAGQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVT 351
Query: 371 TGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430
TGEMLVG AK L MDEISTGLDSSTTFQI KF++QMVHIM+VTMI++LLQPAPETYDLFD
Sbjct: 352 TGEMLVGPAKALFMDEISTGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFD 411
Query: 431 DIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPY 490
IIL+ EGQIVY GPR+N+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY
Sbjct: 412 AIILLCEGQIVYQGPRENILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPY 471
Query: 491 RYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREW 550
+YI V +F + F SFH+GQ+L+ DL +PY+KS+THPAALV EKYGIS WELF+ACFAREW
Sbjct: 472 KYISVPEFAQHFNSFHIGQKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREW 531
Query: 551 LLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGM 610
LLMKRNSF+YIFKT Q+T MS+I MTVFFRTEM G L+ G K++GALF+SL+N+MFNGM
Sbjct: 532 LLMKRNSFIYIFKTTQITIMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGM 591
Query: 611 AELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAA 670
AEL++T+ RLPVF+KQRD LFYPAWAFALPIWVLRIPLSL++S IWI+LTYYTIGFAP+A
Sbjct: 592 AELALTLFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSA 651
Query: 671 SRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEP 730
SRFF+Q LA+F +H MAL L+RFIAA+GRT+++ N LGTF LLL+F LGGFI+AKDDIEP
Sbjct: 652 SRFFRQLLAFFGVHQMALSLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEP 711
Query: 731 FLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYW 790
++ WGYY SPM YGQ +++++EFLD RW P+ D+ I E T+GKALLK RG + D YWYW
Sbjct: 712 WMIWGYYASPMTYGQNALVINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYW 771
Query: 791 IGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSST 850
I +GAL+GFS LFN FI ALTYL+P+GDS S +++E+ ++K
Sbjct: 772 ICVGALMGFSLLFNICFIVALTYLDPLGDSKSVIIDEENEEK------------------ 813
Query: 851 EIVGEEENAP-RRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFR 909
IV + + P +RGM+LPF+PLSL F +NYYVDMPA MK++G+ DRLQLL SGAFR
Sbjct: 814 -IVKDANHTPTKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFR 872
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIH 969
PG+ AL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q TFAR+SGYCEQ DIH
Sbjct: 873 PGIQIALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIH 932
Query: 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029
SP+VT+YESL+YSAWLRL+ DV + R++FV+EVMELVEL PLRDALVGLPG++GLSTEQ
Sbjct: 933 SPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQ 992
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1089
RKRLT+AVELVANPSI+FMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIF
Sbjct: 993 RKRLTVAVELVANPSILFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 1052
Query: 1090 EAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVE 1149
EAFDELLLMKRGG++IYAG LGR SHKL+EYFEAVPGVPK++D NPATWMLE+S+ +VE
Sbjct: 1053 EAFDELLLMKRGGQIIYAGALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVE 1112
Query: 1150 NQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYW 1209
QLGVDFAEIYA S L+QRNQELIKELSTP PGS +L+FPTKYSQ F +Q KA FWKQ+W
Sbjct: 1113 AQLGVDFAEIYAKSELYQRNQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHW 1172
Query: 1210 SYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAV 1269
SYWRNP YNAIRF +T I + FG++FW+KG+K+ ++QDL NLLGAM+S FLG TN
Sbjct: 1173 SYWRNPPYNAIRFFLTIIIGVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTS 1232
Query: 1270 SAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQ 1329
S PV+ +ERTV+YRERAAGM+SAL YA QVA+E IYV Q
Sbjct: 1233 SVQPVVAIERTVFYRERAAGMYSALPYAFA------------------QVAIEAIYVAIQ 1274
Query: 1330 TVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFL 1389
T++Y L+LYSM+GF W + KF F+Y++ F+ FTLYGMMIVALTP Q+A IV+SFFL
Sbjct: 1275 TLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAIVMSFFL 1334
Query: 1390 ALWNLFAGFMIPR 1402
+ WNLFAGF+IPR
Sbjct: 1335 SFWNLFAGFLIPR 1347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451112|ref|XP_004143306.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2081 bits (5391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1398 (70%), Positives = 1166/1398 (83%), Gaps = 39/1398 (2%)
Query: 5 VADDLARSFSVRGGQSISSGSHRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRH 124
LPTYDRL+KGML +L++G+VV EVDVT +GMQ+K+QLMES+L+I+EEDNE+FL R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDV 184
RTDRVGIE+PK+EVRY+HL+V+G++HVGSRALPTLLNV LN ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
QILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL NL+
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLK------------------ 225
Query: 245 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
+GKITYCGHE EFVPQRT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELS
Sbjct: 226 ETGKITYCGHEFKEFVPQRTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELS 285
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
RREK+ GIKPDPEIDAFMKA++V+GQ T+L TDYVLK+LGLDICAD +VG+EMRRGISGG
Sbjct: 286 RREKEAGIKPDPEIDAFMKAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGG 345
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424
Q+KRVTTGEMLVG AK L MDEISTGLDSSTTFQICKF+KQMVHIMDVTMI++LLQPAPE
Sbjct: 346 QRKRVTTGEMLVGPAKGLFMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPE 405
Query: 425 TYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWF 484
T+DLFDD+IL+SEG++VY GPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF
Sbjct: 406 TFDLFDDVILLSEGEVVYQGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWF 465
Query: 485 RKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRA 544
+K+QPYRY+ V +F++GFK FH+GQ+L ++L VP+DK THPAALV +KYG+S W+LFRA
Sbjct: 466 KKSQPYRYVSVPEFIQGFKKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRA 525
Query: 545 CFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLN 604
F+REWLLMKRNSF+YIFKT Q+T MSLI MTVFFRTEM G LEGG KY GALFFSL+N
Sbjct: 526 LFSREWLLMKRNSFIYIFKTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLIN 585
Query: 605 IMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTI 664
+MFNGMAEL++T+ RLPVFYKQRD LF+P WAF LPIWVLRIPLSL++S IWI LTYYTI
Sbjct: 586 MMFNGMAELALTITRLPVFYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTI 645
Query: 665 GFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIA 724
GFAPAASRFF+Q+LAYF IH MAL L+RFIAA GR +VI + +G+F LL++F LGGFIIA
Sbjct: 646 GFAPAASRFFRQFLAYFGIHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIA 705
Query: 725 KDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYN 784
K DIEP++ WGYY+SPMMYGQ +I+++EFLD RW+ S + + T+GK +L R FY
Sbjct: 706 KGDIEPWMIWGYYISPMMYGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYT 765
Query: 785 DSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQM 844
+ YWI +GAL GFSFLFN LFI ALT+LNP+GDS S + +E DKK + G QM
Sbjct: 766 TNKMYWICVGALFGFSFLFNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGIQM 825
Query: 845 TVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSV 904
S+ + ++GM+LPF+PLSL FN +NYYVDMPAEMK++G+ +DRLQLL V
Sbjct: 826 QPIKSSNAANNSNSTKKKGMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDV 885
Query: 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCE 964
SGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK QETFARVSGYCE
Sbjct: 886 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCE 945
Query: 965 QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024
Q DIHSPH+T+YES+LYSAWLRL S V+T+ RK+FV+EVMELVEL PLR+ALVGLPG++G
Sbjct: 946 QNDIHSPHLTVYESVLYSAWLRLPSSVNTETRKMFVEEVMELVELNPLREALVGLPGIDG 1005
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 1006 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1065
Query: 1085 SIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVS 1144
SIDIFE+FDEL LMKRGG+VIYAG LG +SH+L+EYFE+VPGVPKIKD YNPATWMLEV+
Sbjct: 1066 SIDIFESFDELFLMKRGGQVIYAGSLGHQSHRLVEYFESVPGVPKIKDGYNPATWMLEVT 1125
Query: 1145 NISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASF 1204
SVE QL VDFA+IYANS+L+QRNQELI ELS P PGS +LHFPTKYSQ F QFKA F
Sbjct: 1126 ASSVETQLDVDFADIYANSALYQRNQELIAELSQPPPGSEDLHFPTKYSQTFTVQFKACF 1185
Query: 1205 WKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLG 1264
WK Y SYWRNP+YNA+RF MT I + FGL+FW+KG+K+ ++QDL+N LGAMY+ LFLG
Sbjct: 1186 WKWYRSYWRNPRYNAVRFFMTVMIGLLFGLIFWNKGEKTEKEQDLRNFLGAMYAAILFLG 1245
Query: 1265 TTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEII 1324
+NA + PV+ +ERTV+YRERAAGM+S L YA QVA+E+I
Sbjct: 1246 ASNASAIQPVVSIERTVFYRERAAGMYSPLPYAFS------------------QVAIEVI 1287
Query: 1325 YVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIV 1384
Y QT++Y L+L+SM+GF+W+ FF F+YF+ FV FT++GMMI+ALTPG Q+A I
Sbjct: 1288 YNAIQTIIYSLLLFSMMGFQWKASNFFWFYYFILMCFVYFTMFGMMIIALTPGPQIAAIA 1347
Query: 1385 LSFFLALWNLFAGFMIPR 1402
+SFFL+ WNLF+GFM+PR
Sbjct: 1348 MSFFLSFWNLFSGFMVPR 1365
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511856|ref|XP_004164072.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2080 bits (5390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1398 (70%), Positives = 1166/1398 (83%), Gaps = 39/1398 (2%)
Query: 5 VADDLARSFSVRGGQSISSGSHRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRH 124
LPTYDRL+KGML +L++G+VV EVDVT +GMQ+K+QLMES+L+I+EEDNE+FL R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDV 184
RTDRVGIE+PK+EVRY+HL+V+G++HVGSRALPTLLNV LN ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
QILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL NL+
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLK------------------ 225
Query: 245 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
+GKITYCGHE EFVPQRT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELS
Sbjct: 226 ETGKITYCGHEFKEFVPQRTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELS 285
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
RREK+ GIKPDPEIDAFMKA++V+GQ T+L TDYVLK+LGLDICAD +VG+EMRRGISGG
Sbjct: 286 RREKEAGIKPDPEIDAFMKAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGG 345
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424
Q+KRVTTGEMLVG AK L MDEISTGLDSSTTFQICKF+KQMVHIMDVTMI++LLQPAPE
Sbjct: 346 QRKRVTTGEMLVGPAKGLFMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPE 405
Query: 425 TYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWF 484
T+DLFDD+IL+SEG++VY GPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF
Sbjct: 406 TFDLFDDVILLSEGEVVYQGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWF 465
Query: 485 RKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRA 544
+K+QPYRY+ V +F++GFK FH+GQ+L ++L VP+DK THPAALV +KYG+S W+LFRA
Sbjct: 466 KKSQPYRYVSVPEFIQGFKKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRA 525
Query: 545 CFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLN 604
F+REWLLMKRNSF+YIFKT Q+T MSLI MTVFFRTEM G LEGG KY GALFFSL+N
Sbjct: 526 LFSREWLLMKRNSFIYIFKTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLIN 585
Query: 605 IMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTI 664
+MFNGMAEL++T+ RLPVFYKQRD LF+P WAF LPIWVLRIPLSL++S IWI LTYYTI
Sbjct: 586 MMFNGMAELALTITRLPVFYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTI 645
Query: 665 GFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIA 724
GFAPAASRFF+Q+LAYF IH MAL L+RFIAA GR +VI + +G+F LL++F LGGFIIA
Sbjct: 646 GFAPAASRFFRQFLAYFGIHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIA 705
Query: 725 KDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYN 784
K DIEP++ WGYY+SPMMYGQ +I+++EFLD RW+ S + + T+GK +L R FY
Sbjct: 706 KGDIEPWMIWGYYISPMMYGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYT 765
Query: 785 DSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQM 844
+ YWI +GAL GFSFLFN LFI ALT+LNP+GDS S + +E DKK + G QM
Sbjct: 766 TNKMYWICVGALFGFSFLFNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGIQM 825
Query: 845 TVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSV 904
S+ + ++GM+LPF+PLSL FN +NYYVDMPAEMK++G+ +DRLQLL V
Sbjct: 826 QPIKSSNAANNSNSTEKKGMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDV 885
Query: 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCE 964
SGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK QETFARVSGYCE
Sbjct: 886 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCE 945
Query: 965 QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024
Q DIHSPH+T+YES+LYSAWLRL S V+T+ RK+FV+EVMELVEL PLR+ALVGLPG++G
Sbjct: 946 QNDIHSPHLTVYESVLYSAWLRLPSSVNTETRKMFVEEVMELVELNPLREALVGLPGIDG 1005
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 1006 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1065
Query: 1085 SIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVS 1144
SIDIFE+FDEL LMKRGG+VIYAG LG +SH+L+EYFE+VPGVPKIKD YNPATWMLEV+
Sbjct: 1066 SIDIFESFDELFLMKRGGQVIYAGSLGHQSHRLVEYFESVPGVPKIKDGYNPATWMLEVT 1125
Query: 1145 NISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASF 1204
SVE QL VDFA+IYANS+L+QRNQELI ELS P PGS +LHFPTKYSQ F QFKA F
Sbjct: 1126 ASSVETQLDVDFADIYANSALYQRNQELIAELSQPPPGSEDLHFPTKYSQTFTVQFKACF 1185
Query: 1205 WKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLG 1264
WK Y SYWRNP+YNA+RF MT I + FGL+FW+KG+K+ ++QDL+N LGAMY+ LFLG
Sbjct: 1186 WKWYRSYWRNPRYNAVRFFMTVMIGLLFGLIFWNKGEKTEKEQDLRNFLGAMYAAILFLG 1245
Query: 1265 TTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEII 1324
+NA + PV+ +ERTV+YRERAAGM+S L YA QVA+E+I
Sbjct: 1246 ASNASAIQPVVSIERTVFYRERAAGMYSPLPYAFS------------------QVAIEVI 1287
Query: 1325 YVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIV 1384
Y QT++Y L+L+SM+GF+W+ FF F+YF+ FV FT++GMMI+ALTPG Q+A I
Sbjct: 1288 YNAIQTIIYSLLLFSMMGFQWKASNFFWFYYFILMCFVYFTMFGMMIIALTPGPQIAAIA 1347
Query: 1385 LSFFLALWNLFAGFMIPR 1402
+SFFL+ WNLF+GFM+PR
Sbjct: 1348 MSFFLSFWNLFSGFMVPR 1365
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486942|ref|XP_002265628.2| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2079 bits (5386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 982/1394 (70%), Positives = 1166/1394 (83%), Gaps = 50/1394 (3%)
Query: 11 RSFSVRGGQSISSGSHRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S+ SGS RSWASASIREV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSTSSRS-KSLGSGSRRSWASASIREVVSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVG 130
L+KGML Q+L+DGKVV EVD T+LGMQ++K L+ESIL++VEEDNE+FL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDV 190
+EIPKIEV ++HLS++GD +VG+RALPTLLN +N IE LGL+ L PSKKR V+ILKDV
Sbjct: 130 VEIPKIEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKIT 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ ++LR+ GKIT
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRME------------------GKIT 231
Query: 251 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQ 310
YCGHEL+EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK+
Sbjct: 232 YCGHELSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEA 291
Query: 311 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVT 370
GIKPDPEIDAFMKA A+AGQETSLVTDYVLK+LGLDICAD +VGD+MRRGISGG+KKRVT
Sbjct: 292 GIKPDPEIDAFMKATAMAGQETSLVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVT 351
Query: 371 TGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430
GEMLVG AK L MDEISTGLDSSTTFQ+ KF++QMVHIM+VTMI++LLQPAPETYDLFD
Sbjct: 352 IGEMLVGPAKALFMDEISTGLDSSTTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFD 411
Query: 431 DIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPY 490
IIL+ EGQIVY GPR+N+LEFFE +GFKCPERKGVADFLQEVTS+KDQEQYWFRKN+PY
Sbjct: 412 GIILLCEGQIVYQGPRENILEFFESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPY 471
Query: 491 RYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREW 550
RYI V +FV+ F SFH+GQ+L+ D +PYD+S+THPAALV EKYGIS WELF+ACFAREW
Sbjct: 472 RYISVPEFVQHFNSFHIGQKLSDDFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREW 531
Query: 551 LLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGM 610
LLMKRNSF+YIFKT Q+T MS+I MTVFFRTEM G L+ G K++GALF+SL+N+MFNG+
Sbjct: 532 LLMKRNSFIYIFKTTQITIMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGL 591
Query: 611 AELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAA 670
AEL++T+ RLPVF+KQRD LFYPAWAFALPIWVLRIPLSL++S IWI+LTYYTIG+APAA
Sbjct: 592 AELALTIFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAA 651
Query: 671 SRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEP 730
SRFF+Q LA+F +H MAL L+RFIAA+GRT ++ N L TF LLL+ LGGF+++KDDI+P
Sbjct: 652 SRFFRQLLAFFVVHQMALSLFRFIAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKP 711
Query: 731 FLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYW 790
++ WGYY SPMMYGQ +++++EFLD RW P+ I E T+GKALLK RG + D YWYW
Sbjct: 712 WMIWGYYASPMMYGQNALVINEFLDDRWSTPNIYTRIPEPTVGKALLKARGMFVDGYWYW 771
Query: 791 IGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSST 850
I +GAL+GFS LFN FIAALTYL+P+GDS S +++E D EV T R +T
Sbjct: 772 ISVGALLGFSLLFNICFIAALTYLDPLGDSKSVIIDEGIDM------EVRNT----RENT 821
Query: 851 EIVGEEENAP--RRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAF 908
+ V ++ N +RGM+LPF+PLSL F +NYYVDMPA MK++G D LQLL SGAF
Sbjct: 822 KAVVKDANHALTKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGNEADHLQLLRDASGAF 881
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI 968
RPG+L AL+GVSGAGKTTLMDVLAGRKT GYIEG I ISGYPK Q TFAR+SGYCEQTDI
Sbjct: 882 RPGILMALVGVSGAGKTTLMDVLAGRKTSGYIEGSISISGYPKNQATFARISGYCEQTDI 941
Query: 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
HSP+VT+YESL+YSAWLRL+ DV + R++FV+EVM+LVEL PLR+ALVGLPG++GLSTE
Sbjct: 942 HSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMDLVELHPLRNALVGLPGIDGLSTE 1001
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1088
QRKRLT+AVELVANPSIIFMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDI
Sbjct: 1002 QRKRLTVAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDI 1061
Query: 1089 FEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISV 1148
FEAFDELLLMKRGG++IYAGPLGR SHKL+EYFEAVPGVPK++D NPATWMLE+S+ +V
Sbjct: 1062 FEAFDELLLMKRGGQIIYAGPLGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAV 1121
Query: 1149 ENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQY 1208
E QLGVDFAEIYA S L+QRNQE IKELSTP PGS +L+FPTKYSQ F TQ KA FWKQ+
Sbjct: 1122 EAQLGVDFAEIYAKSELYQRNQEFIKELSTPSPGSKDLYFPTKYSQSFITQCKACFWKQH 1181
Query: 1209 WSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNA 1268
WSYWRNP YNA+RF +T I + FGL+FW++G+++ ++QDL NLLGAM++ FLG TNA
Sbjct: 1182 WSYWRNPPYNALRFFLTIIIGVLFGLIFWNEGEQTDKEQDLINLLGAMFAAVFFLGATNA 1241
Query: 1269 VSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTA 1328
S P++ +ERTV+YRERAAGM+SAL YA QVA+E IY+T
Sbjct: 1242 ASVQPIVAIERTVFYRERAAGMYSALPYAFA------------------QVAIEAIYITI 1283
Query: 1329 QTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFF 1388
QT +Y L+LYSMIGF W + KF F+Y++ F+ FTLYGMMIVALTP Q+A I++SFF
Sbjct: 1284 QTFVYTLLLYSMIGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAILMSFF 1343
Query: 1389 LALWNLFAGFMIPR 1402
L+ WNLF+GF+IPR
Sbjct: 1344 LSFWNLFSGFLIPR 1357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1403 | ||||||
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.812 | 0.784 | 0.675 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.782 | 0.755 | 0.700 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.942 | 0.899 | 0.537 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.775 | 0.764 | 0.603 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.901 | 0.877 | 0.528 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.833 | 0.823 | 0.533 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.791 | 0.766 | 0.530 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.786 | 0.781 | 0.537 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.407 | 0.403 | 0.583 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.556 | 0.547 | 0.433 | 0.0 |
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4139 (1462.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 778/1152 (67%), Positives = 933/1152 (80%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH 254
K ++ +L G K + M L G Q+ L ++ T Q SG+ITYCGH
Sbjct: 184 KRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQA---LAGKLDDTLQMSGRITYCGH 240
Query: 255 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKP 314
E EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+L++ELSRREK++GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 315 DPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEM 374
DP+IDAFMK++A++GQETSLVTDYVLK+LGLDICAD + GD MRRGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 375 LVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL 434
LVG A+ L MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++LLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 435 ISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIP 494
+SEGQIVY GPRDNVLEFFE GF+CPERKGVADFLQEVTSKKDQEQYW ++ QPY Y+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 495 VSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMK 554
VSDF GF +FH GQ+L S+ RVPYDK++TH AALV +KYGIS WELF+ACF REWLLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 555 RNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELS 614
RNSFVY+FKT Q+T MSLI MTV+ RTEM VG + G K++GA+FFSL+N+MFNG+AEL+
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 615 MTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFF 674
TV+RLPVFYKQRD LFYP WAFALP W+L+IPLSL++S IWI LTYYTIGFAP+A+RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 675 KQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEW 734
+Q LAYFC++ MAL L+RF+ AIGRTEVI+N++GT KDDI P++ W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 735 GYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIG 794
YY+SPMMYGQT+I+++EFLD RW P+ D IN +T+G+ LLK RGF+ + YW+WI I
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 795 ALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVG 854
AL+GFS LFN +I AL YLNP+G+S +TVVEE DK++ EG+ + + SS+
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSSN--- 837
Query: 855 EEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLT 914
P+RGM+LPF+PLSL FN +NYYVDMP+EMK +GV DRLQLL V GAFRPG+LT
Sbjct: 838 ---KGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILT 894
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974
AL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q TFARVSGYCEQ DIHSPHVT
Sbjct: 895 ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVT 954
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLT 1034
+YESL+YSAWLRLS+D+D K R++FV+EVMELVELKPLR+++VGLPGV+GLSTEQRKRLT
Sbjct: 955 VYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLT 1014
Query: 1035 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1015 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 1074
Query: 1095 LLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGV 1154
LLLMKRGG+VIYAG LG S KL+EYFEAV GVPKI D YNPATWML+V+ S+E+Q+ +
Sbjct: 1075 LLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSL 1134
Query: 1155 DFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRN 1214
DFA+I++NSSL++RNQELIK+LSTP PGS +++F TKY+Q F TQ KA FWKQYWSYWR+
Sbjct: 1135 DFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRH 1194
Query: 1215 PQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPV 1274
PQYNAIRFLMT I + FGL+FW G K+ +QDL N GAMY+ LFLG NA + P
Sbjct: 1195 PQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPA 1254
Query: 1275 ICVERTVYYRERAAGMFSALSYALGQNRNFVIRKL--TNEHSLMLQVAVEIIYVTAQTV- 1331
I +ERTV+YRE+AAGM+SA+ YA+ Q ++ T ++L+L + + A+ +
Sbjct: 1255 IAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLW 1314
Query: 1332 MYVLILYSMIGF 1343
Y +L S I F
Sbjct: 1315 FYYYMLTSFIYF 1326
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4128 (1458.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 775/1106 (70%), Positives = 913/1106 (82%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH 254
K ++ +L G K + M L G Q+ L ++ T Q SG+ITYCGH
Sbjct: 182 KKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQA---LAGKLDDTLQMSGRITYCGH 238
Query: 255 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKP 314
E EFVPQ+TCAYISQHDLH GEMTVRE+LDFSGRCLGVGTRY+LL ELSRRE++ GIKP
Sbjct: 239 EFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKP 298
Query: 315 DPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEM 374
DPEIDAFMK++A++GQETSLVTDYVLKLLGLDICADT+VGD MRRGISGGQ+KR+TTGEM
Sbjct: 299 DPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEM 358
Query: 375 LVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL 434
LVG A L MDEISTGLDSSTTFQICKF++Q+VHI DVTM+++LLQPAPET++LFDDIIL
Sbjct: 359 LVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIIL 418
Query: 435 ISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIP 494
+SEGQIVY G RDNVLEFFE MGFKCPERKG+ADFLQEVTSKKDQEQYW R+ PY Y+
Sbjct: 419 LSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVS 478
Query: 495 VSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMK 554
V DF GF SFH GQQLAS+ RVPYDK++THPAALV +KYGIS +LF+ACF REWLLMK
Sbjct: 479 VHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMK 538
Query: 555 RNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELS 614
RNSFVY+FKT Q+T MSLI MTV+FRTEM VG ++ G K++GALFFSL+N+MFNGMAEL+
Sbjct: 539 RNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELA 598
Query: 615 MTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFF 674
TV+RLPVF+KQRD LFYP WAFALP ++L+IPLSL++S IWI LTYYTIGFAP+A+RFF
Sbjct: 599 FTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFF 658
Query: 675 KQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEW 734
+Q LAYFC++ MAL L+RF+ A+GRTEVI N+ GT KDDI +L W
Sbjct: 659 RQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTW 718
Query: 735 GYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIG 794
YY SPMMYGQT+++++EFLD RW P+ D IN +T+G+ LLK RGF+ + YW+WI IG
Sbjct: 719 CYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIG 778
Query: 795 ALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVG 854
AL+GF+ LFNF +I AL YLNP+G+S +T V E+G K + G+ GT +V E+
Sbjct: 779 ALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEG-KDKHKGSH-SGTGGSV---VELTS 833
Query: 855 EEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLT 914
+ P++GM+LPF+PLSL FN +NYYVDMPAEMK +GV DRLQLL V GAFRPGVLT
Sbjct: 834 TSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLT 893
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974
AL+GVSGAGKTTLMDVLAGRKTGGY+EG I ISGYPK Q TFARVSGYCEQ DIHSPHVT
Sbjct: 894 ALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVT 953
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLT 1034
+YESL+YSAWLRLS+D+DTK R++FV+EVMELVELKPLR+++VGLPGV+GLSTEQRKRLT
Sbjct: 954 VYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLT 1013
Query: 1035 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1014 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 1073
Query: 1095 LLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGV 1154
LLLMKRGG+VIYAG LG S KL+EYFEA+ GVPKIKD YNPATWML+V+ S+E+Q+ V
Sbjct: 1074 LLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSV 1133
Query: 1155 DFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRN 1214
DFA+I+ NSS+++RNQELIKELSTP PGS++L+F TKY+QPF TQ KA FWK YWS WR
Sbjct: 1134 DFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRY 1193
Query: 1215 PQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPV 1274
PQYNAIRFLMT I + FGLLFW G K ++QDL N GAMY+ LFLG TNA + P
Sbjct: 1194 PQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPA 1253
Query: 1275 ICVERTVYYRERAAGMFSALSYALGQ 1300
+ +ERTV+YRE+AAGM+SA+ YA+ Q
Sbjct: 1254 VAIERTVFYREKAAGMYSAIPYAISQ 1279
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3658 (1292.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 745/1385 (53%), Positives = 962/1385 (69%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHLG 96
+++FS R+ DDEE L+WAAIE+LPTY RL+ ++N ++ED DV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVED--------DVYGNQ 84
Query: 97 MQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEI-PKIEVRYDHLSVD-GDVHVGSR 154
+ K+ + ++ ED ++F+ + ++ I K+ R D + + V V
Sbjct: 85 LMSKEV---DVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYE 141
Query: 155 ALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLM 214
L T+ S LL++V + + + K +++T+L G K M
Sbjct: 142 HL-TIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQ-FAKKAQLTILKDISGVIKPGRM 199
Query: 215 LALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLH 274
L G + L ++ K+ Q SG ITY G++L+EFVP++T AYISQ+DLH
Sbjct: 200 TLLLGPPSSGKTTLLLA---LAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLH 256
Query: 275 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334
G MTV+ETLDFS RC GVGTRY+LL EL+RREK GI P+ ++D FMKA A G + SL
Sbjct: 257 VGIMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSL 316
Query: 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS 394
VTDY LK+LGLDIC DT+VGD+M RGISGGQKKRVTTGEM+VG K L MDEISTGLDSS
Sbjct: 317 VTDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 376
Query: 395 TTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFE 454
TTFQI K L+Q+VH+ + T++++LLQPAPET+DLFDDIIL+SEGQIVY GPRDN+LEFFE
Sbjct: 377 TTFQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFE 436
Query: 455 QMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASD 514
GFKCPERKG ADFLQEVTSKKDQEQYW N+PY YIPVS+F +KSFH+G +++++
Sbjct: 437 SFGFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNE 496
Query: 515 LRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLIC 574
L VP+DKS+ H AALV +KY +SK EL ++C+ +EWLLM+RN+F Y+FKT Q+ ++ I
Sbjct: 497 LAVPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAIT 556
Query: 575 MTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPA 634
T+F RTEM+ + N Y GAL F ++ MFNG AE++M V RLPVFYKQRD LFYP+
Sbjct: 557 STLFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPS 616
Query: 635 WAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFI 694
W F+LP ++L IP S+L+ST W+V+TYY+IGFAP ASRFFKQ+L F I MA L+R I
Sbjct: 617 WTFSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLI 676
Query: 695 AAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFL 754
A++ RT +I N G K I + W Y+VSP+ Y ++V+E
Sbjct: 677 ASVCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMF 736
Query: 755 DGRW--DVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALT 812
RW + S + +I LG +L Y+ WYWI +GAL+ F+ LFN LF ALT
Sbjct: 737 APRWMNKMASSNSTIK---LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALT 793
Query: 813 YLNPIGDSNSTVVEE---DGDKKR---------ASGN---EVEGTQMTVRSSTEIVGEEE 857
YLNP+G + EE D D+ + A GN EV +M+ S+ E G
Sbjct: 794 YLNPLGKKAGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAG 853
Query: 858 NAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALM 917
N ++GM+LPF PL+++F+ + Y+VDMP EM+ +GV E RLQLL V+GAFRPGVLTALM
Sbjct: 854 N--KKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALM 911
Query: 918 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977
GVSGAGKTTLMDVLAGRKTGGYIEGD++ISG+PK QETFAR+SGYCEQTDIHSP VT+ E
Sbjct: 912 GVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRE 971
Query: 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1037
SL++SA+LRL +V ++ +FVD+VMELVEL LRD++VGLPGV GLSTEQRKRLTIAV
Sbjct: 972 SLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAV 1031
Query: 1038 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097
ELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL+L
Sbjct: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELML 1091
Query: 1098 MKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFA 1157
MKRGG+VIYAGPLG+ SHK++EYFE+ PGV KI + YNPATWMLE S+++ E +L VDFA
Sbjct: 1092 MKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFA 1151
Query: 1158 EIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQY 1217
E+Y S+LHQRN+ L+KELS P G+S+L+F T++SQ + QFK+ WKQ+W+YWR+P Y
Sbjct: 1152 ELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDY 1211
Query: 1218 NAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICV 1277
N +RF+ T ++ G +FW G S DL ++GA+Y+ +F+G N + P++ V
Sbjct: 1212 NLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAV 1271
Query: 1278 ERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLIL 1337
ERTV+YRERAAGM+SA+ YA+ Q V E+ YV QTV Y LI+
Sbjct: 1272 ERTVFYRERAAGMYSAMPYAISQ------------------VTCELPYVLIQTVYYSLIV 1313
Query: 1338 YSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAG 1397
Y+M+GF+W+ KFF F + + SF+ +T YGMM V+LTP QQVA+I S F ++NLF+G
Sbjct: 1314 YAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSG 1373
Query: 1398 FMIPR 1402
F IPR
Sbjct: 1374 FFIPR 1378
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3478 (1229.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 675/1118 (60%), Positives = 840/1118 (75%)
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
+G++TY GH +NEFVPQRT AYI Q+D+H GEMTVRET ++ R GVG+RY++L EL+R
Sbjct: 211 TGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELAR 270
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
REK+ IKPDP+ID FMKA++ AG++T+++TDY+LK+LGL++CADTMVGD+M RGISGGQ
Sbjct: 271 REKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQ 330
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425
KKRVTTGEMLVG ++ L MDEISTGLDSSTT+QI L+ VHI + T +++LLQPAPET
Sbjct: 331 KKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPET 390
Query: 426 YDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFR 485
++LFDDIILI+EG+I+Y GPRD+V+EFFE MGFKCP RKGVADFLQEVTSKKDQ QYW R
Sbjct: 391 FNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWAR 450
Query: 486 KNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRAC 545
+++PYR+I V +F E F+SFH+G+++ +L +P+DK+++HPAAL +KYG+ EL +
Sbjct: 451 RDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTS 510
Query: 546 FAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNI 605
F+RE+LLMKRNSFVY FK QL M+ + MT+FFRTEM G+ Y GALFF L+ +
Sbjct: 511 FSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMML 570
Query: 606 MFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIG 665
MFNGM+ELSMT+ +LPVFYKQRD LFYPAW ++LP W+L+IP+S +++ + +TYY IG
Sbjct: 571 MFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIG 630
Query: 666 FAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXK 725
F P R FKQY+ ++ MA L++ +AA+GR ++ N G +
Sbjct: 631 FDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSR 690
Query: 726 DDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYND 785
DDI+ + WGY++SP+MYGQ +IL +EF W + S TLG LK RGF
Sbjct: 691 DDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSS---ETLGVTFLKSRGFLPH 747
Query: 786 SYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMT 845
+YWYWIG GAL+GF LFNF F ALT+LN +G + + EE + +E E +
Sbjct: 748 AYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEP------ASDETE--LQS 799
Query: 846 VRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVS 905
RS E V E +RGM+LPF P S+TF+ + Y VDMP EM +G EDRL LL V+
Sbjct: 800 ARS--EGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVN 857
Query: 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQ 965
GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI+G+I ISGYPK Q+TFAR+SGYCEQ
Sbjct: 858 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQ 917
Query: 966 TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025
TDIHSPHVT+YESL+YSAWLRL +VD KRKIF++EVMELVEL PLR ALVGLPG +GL
Sbjct: 918 TDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGL 977
Query: 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085
STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS
Sbjct: 978 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1037
Query: 1086 IDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSN 1145
IDIFEAFDEL L+KRGG IY GPLG ES LI YFE++ G+ KI + YNPATWMLEVS
Sbjct: 1038 IDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVST 1097
Query: 1146 ISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASFW 1205
S E LGVDFA++Y NS L++RN+ELIKELS P PGS +L+FPT+YSQ F TQ AS W
Sbjct: 1098 TSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLW 1157
Query: 1206 KQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGT 1265
KQ+WSYWRNP Y A+RFL T IA+ FG +FWD G K+ +QDL N +G+MY+ LFLG
Sbjct: 1158 KQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGL 1217
Query: 1266 TNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIY 1325
NA S PV+ VERTV+YRE+AAGM+SA+ YA Q F+ E +L A I+Y
Sbjct: 1218 QNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQV--FI------EIPYVLVQA--IVY 1267
Query: 1326 VTAQTVMYVLILY--SMIGFKWELGKFFLFFYFMWASF 1361
++Y +I + + + F W L FF++ F+ +F
Sbjct: 1268 ---GLIVYAMIGFEWTAVKFFWYL--FFMYGSFLTFTF 1300
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3454 (1220.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 692/1309 (52%), Positives = 924/1309 (70%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHLG 96
+++F+ S R+ +DEE L+WA+IE+LPTY+RL+ ++ ++ ED DV G
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGED--------DV--YG 80
Query: 97 MQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEI-PKIEVRYDHLSVD-GDVHVGSR 154
Q + ++ + ++ E+ ++F+ + ++ I K+ R D + + V V
Sbjct: 81 NQILNKAVD-VTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYD 139
Query: 155 ALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLM 214
L T+ S LL+ V + + + + K +++T+L G K + M
Sbjct: 140 HL-TVKADCYTGDRSLPSLLNAVRNMGEAALGMIGIR-LAKKAQLTILKDVSGIVKPSRM 197
Query: 215 LALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLH 274
L G + L ++ K+ SG++TY G+ LNEFVP +T AYISQ+DLH
Sbjct: 198 TLLLGPPSSGKTTLLLA---LAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLH 254
Query: 275 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334
G MTV+ETLDFS RC GVGTRY+LL EL+RREK GI P+ ++D FMKA A G ++SL
Sbjct: 255 VGIMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSL 314
Query: 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS 394
+TDY LK+LGLDIC DT+VGD+M RGISGGQKKRVTTGEM+VG K L MDEISTGLDSS
Sbjct: 315 ITDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 374
Query: 395 TTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFE 454
TTFQI K L+Q+VH+ + T++++LLQPAPET+DLFDDIIL+SEGQIVY GPRD++LEFFE
Sbjct: 375 TTFQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFE 434
Query: 455 QMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASD 514
GFKCPERKG ADFLQEVTSKKDQEQYW N+PYRYIPVS+F FK FH+G +L+++
Sbjct: 435 SFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNE 494
Query: 515 LRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLIC 574
L VPYDKS++H AAL+ +KY I K EL ++C+ +EW+LMKRNSF Y+FKT Q+ ++ I
Sbjct: 495 LSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAIT 554
Query: 575 MTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPA 634
T++ RTEM + N Y G+L F+++ MFNG+AE++MT+ RLPVFYKQRD LF+P
Sbjct: 555 STLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPP 614
Query: 635 WAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFI 694
W + LP ++L IP+S+ +ST W+V+TYY+IG+AP A RFFKQ+L F I MA ++RFI
Sbjct: 615 WTYTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFI 674
Query: 695 AAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFL 754
A+ RT I N G + +I + W Y++SP+ Y +I V+E
Sbjct: 675 ASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELF 734
Query: 755 DGRWDVPSGDRSINERT-LGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTY 813
RW S N T LG ++L ++D WYWIG+G L+GF+ +FN F ALTY
Sbjct: 735 APRW---MNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTY 791
Query: 814 LNPIGDSNSTVV-EEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLS 872
L+P+G + + + EED + K +G+ E T+M E + ++GM+LPF PL+
Sbjct: 792 LDPLGKAQAILPKEEDEEAKGKAGSNKE-TEM-----------ESVSAKKGMVLPFTPLA 839
Query: 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932
++F+ + Y+VDMPAEM+ +GV E RLQLL V+ AFRPGVLTALMGVSGAGKTTLMDVLA
Sbjct: 840 MSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLA 899
Query: 933 GRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992
GRKTGGYIEGD+++SG+PKKQETFAR+SGYCEQTDIHSP VT+ ESL++SA+LRL+ +V
Sbjct: 900 GRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVS 959
Query: 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052
+ + +FVD+VMELVEL LRDA+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 960 KEDKLMFVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1019
Query: 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112
SGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG VIY+GPLGR
Sbjct: 1020 SGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGR 1079
Query: 1113 ESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQEL 1172
SHK++EYFE+ PGVPKI + YNPATWMLE S+++ E +LGVDFAE+Y S+L QRN+ L
Sbjct: 1080 NSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKAL 1139
Query: 1173 IKELSTPEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFF 1232
++ELS P G+++L+F T++SQ + QFK+ WKQ+W+YWR+P YN +RF+ T ++
Sbjct: 1140 VQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMI 1199
Query: 1233 GLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFS 1292
G +FW G K S QDL ++GA+Y+ +F+G N + P++ VERTV+YRE+AAGM+S
Sbjct: 1200 GSVFWQIGGKRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYS 1259
Query: 1293 ALSYALGQ---NRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILY 1338
A+ YA+ Q +V+ + T +SL++ V + ++ + ++ I Y
Sbjct: 1260 AIPYAISQVTCELPYVLIQ-TTYYSLIIYSMVGFEWKASKFLWFIFINY 1307
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3245 (1147.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 642/1204 (53%), Positives = 852/1204 (70%)
Query: 163 ALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222
AL TI + + +++ R++ + + G K +++T+L G G + + + L G
Sbjct: 119 ALPTIPNFI--INMAEGLLRNIHV---IGG--KRNKLTILDGISGVIRPSRLTLLLGPPS 171
Query: 223 ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 282
+ L R+ Q SGKITY G++L E + RT AY+SQ D H EMTVR+
Sbjct: 172 SGKTTLLLA---LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQ 228
Query: 283 TLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342
TL+F+GRC GVG +Y++L EL+RREK GI PD ++D FMK++A+ G ETSLV +YV+K+
Sbjct: 229 TLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKI 288
Query: 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKF 402
LGLD CADT+VGDEM +GISGGQKKR+TTGE+LVG A+VL MDEIS GLDSSTT QI +
Sbjct: 289 LGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMY 348
Query: 403 LKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPE 462
++ H ++ T +++LLQP+PETY+LFDD+IL+SEGQI+Y GPRD VL+FF +GF CP+
Sbjct: 349 MRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPD 408
Query: 463 RKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKS 522
RK VADFLQEVTSKKDQ+QYW +PYRY+P F E F+S+ G++LA L VP+DK
Sbjct: 409 RKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKR 468
Query: 523 QTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTE 582
H AAL +YG+ K EL + FA + LMK+N+F+Y+FK QL ++LI MTVF RT
Sbjct: 469 FNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTT 528
Query: 583 MSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIW 642
M ++ GN Y G+L+FS++ I+FNG E+ M V +LPV YK RD FYP+WA+ LP W
Sbjct: 529 MHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSW 588
Query: 643 VLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEV 702
+L IP S+++S W+ +TYYTIG+ P SRF +Q+L YF +H M+L L+R + ++GR +
Sbjct: 589 LLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMI 648
Query: 703 ITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPS 762
+ N G+ +D I + WGY++SP+MY Q + V+EFL W +
Sbjct: 649 VANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTA 708
Query: 763 GDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNS 822
G+ + + +LG ALLK R ++ +YWYWIG+ AL+G++ LFN LF L +LNP G +
Sbjct: 709 GNHTSD--SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQA 766
Query: 823 TVVEEDGDK--KRASGNE-VEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMN 879
V E+ D+ K+ G+E V + ++ S I G+ RGM+LPF+PLSL+F+ +N
Sbjct: 767 VVSREELDEREKKRKGDEFVVELREYLQHSGSIHGKYFK--NRGMVLPFQPLSLSFSNIN 824
Query: 880 YYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 939
YYVD+P +K +G+ EDRLQLL +++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG
Sbjct: 825 YYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGT 884
Query: 940 IEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIF 999
IEGD+ ISG+PK+QETFAR+SGYCEQ D+HSP +T+ ESLL+SA LRL +D+D++ ++ F
Sbjct: 885 IEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAF 944
Query: 1000 VDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
V EVMELVEL L ALVGLPGV+GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARA
Sbjct: 945 VHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1004
Query: 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIE 1119
AAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG +IYAGPLG++S +LI+
Sbjct: 1005 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIK 1064
Query: 1120 YFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTP 1179
YFE++ GV KIK +NPA WML+V+ + E++LGVDFAEIY NS+L QRN+ELI+ LS P
Sbjct: 1065 YFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKP 1124
Query: 1180 EPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDK 1239
+ E+ FPT+YSQ ++QF A WKQ SYWRNPQY A+RF T I++ G + W
Sbjct: 1125 SNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKF 1184
Query: 1240 GQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALG 1299
G K QQ L N +G+MY+ LF+G TNA +A PV+ +ER V YRERAAGM+SAL +A
Sbjct: 1185 GSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFA 1244
Query: 1300 QNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILY--SMIGFKWELGKFFLFFYFM 1357
Q F+ E +L A IY T+ Y + + S + F W L FF++F M
Sbjct: 1245 QV--FI------EFPYVL--AQSTIY---STIFYAMAAFEWSAVKFLWYL--FFMYFSIM 1289
Query: 1358 WASF 1361
+ +F
Sbjct: 1290 YFTF 1293
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3135 (1108.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 602/1134 (53%), Positives = 808/1134 (71%)
Query: 244 QASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
+ SG+I+Y GH L+EFVPQ+T AYISQ+DLH EMTVRET+DFS RC GVG+R +++ E+
Sbjct: 229 KCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEV 288
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
S+REK++GI PD E+DA+MKA++V G + SL TDY+LK+LGLDICA+ ++GD MRRGISG
Sbjct: 289 SKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISG 348
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
GQKKR+TT EM+VG K L MDEI+ GLDSST FQI K L+Q HI T++V+LLQPAP
Sbjct: 349 GQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAP 408
Query: 424 ETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYW 483
E+YDLFDDI+L+++G+IVYHGPR VL FFE GF+CPERKGVADFLQEV SKKDQ QYW
Sbjct: 409 ESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYW 468
Query: 484 FRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFR 543
+ ++ PY ++ V + FK +G+++ L PYD+S++H AL Y + WELF
Sbjct: 469 WHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFI 528
Query: 544 ACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLL 603
AC +RE+LLMKRN FVYIFKT QL + I MTVF RT M + D+ GN Y ALFF+L+
Sbjct: 529 ACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGI-DIIHGNSYMSALFFALI 587
Query: 604 NIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYT 663
++ +G ELSMT RL VFYKQ+ FYPAWA+A+P VL++PLS +S +W L+YY
Sbjct: 588 ILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYV 647
Query: 664 IGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXX 723
IG+ P ASRFFKQ++ F +H ++ ++R +AAI +T V + G+
Sbjct: 648 IGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVI 707
Query: 724 XKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFY 783
+ +L+WG++ +P+ YG+ + V+EFL RW+ N TLG+ +L+ RG
Sbjct: 708 PPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWN----QMQPNNFTLGRTILQTRGMD 763
Query: 784 NDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQ 843
+ Y YW+ + AL+GF+ LFN +F ALT+L S + + ++ + + + E +
Sbjct: 764 YNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDSS 823
Query: 844 MTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHS 903
+ +++ V EE M+LPF+PL++TF +NY+VDMP EM+ +G + +LQLL
Sbjct: 824 VRKKTTDSPVKTEEEDK---MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSD 880
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYC 963
++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT GYIEGDI+ISG+PK QETFARVSGYC
Sbjct: 881 ITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYC 940
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
EQTDIHSP++T+ ES++YSAWLRL+ ++D + FV +V+E +EL ++D+LVG+ GV+
Sbjct: 941 EQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVS 1000
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQ
Sbjct: 1001 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 1060
Query: 1084 PSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEV 1143
PSIDIFEAFDEL+L+KRGGR+IY GPLG+ S +IEYFE+VP +PKIKD +NPATWML+V
Sbjct: 1061 PSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDV 1120
Query: 1144 SNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKAS 1203
S+ SVE +LGVDFA+IY +S+L++RN EL+K+LS P+ GSS++ F ++Q ++ QFK+
Sbjct: 1121 SSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSI 1180
Query: 1204 FWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFL 1263
WK SYWR+P YN +R + T ++ FG LFW +GQ QQ + + GA+Y + LFL
Sbjct: 1181 LWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFL 1240
Query: 1264 GTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEI 1323
G N SA+ ER V YRER AGM+SA +YALGQ V+ ++ + +Q A E
Sbjct: 1241 GINNCASALQYFETERNVMYRERFAGMYSATAYALGQ----VVTEIPY---IFIQAA-EF 1292
Query: 1324 IYVTAQTVMYVLILYSMIGFKWELGKFF---LFFYFMWASFVIFTLYGMMIVAL 1374
+ VT + + Y + W L F L F ++ A F++ M+ A+
Sbjct: 1293 VIVTYPMIGFYPSAYKVF---WSLYSMFCSLLTFNYL-AMFLVSITPNFMVAAI 1342
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3096 (1094.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 609/1133 (53%), Positives = 807/1133 (71%)
Query: 247 GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 306
G+I+Y GH LNE VPQ+T AYISQHDLH EMT RET+DFS RC GVG+R +++ E+S+R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 307 EKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQK 366
EK GI PDPEIDA+MKA++V G + SL TDY+LK+LGLDICA+T+VG+ M+RGISGGQK
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 367 KRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426
KR+TT EM+VG K L MDEI+ GLDSST FQI K L+Q+ HI + T+ V+LLQPAPE+Y
Sbjct: 317 KRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESY 376
Query: 427 DLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRK 486
DLFDDI+L++EG+IVYHGPRD+VL+FFE+ GF+CPERKGVADFLQEV SKKDQ QYW +
Sbjct: 377 DLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQ 436
Query: 487 NQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACF 546
N P+ ++ V + FK +G+++ L PYD S+TH AL Y + KWELFRAC
Sbjct: 437 NLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACI 496
Query: 547 AREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIM 606
+RE+LLMKRN FVY+FKTFQL ++I MTVF RT M + D+ GN Y LFF+ + ++
Sbjct: 497 SREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDI-DIIHGNSYMSCLFFATVVLL 555
Query: 607 FNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGF 666
+G+ ELSMTV RL VFYKQ+ FYPAWA+A+P VL+IPLS +S +W LTYY IG+
Sbjct: 556 VDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGY 615
Query: 667 APAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKD 726
P RFF+Q++ F +H ++ ++R IAAI +T V G+
Sbjct: 616 TPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYT 675
Query: 727 DIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDS 786
D+ +L+WG++V+P+ Y + + V+EFL RW + N TLG+ +L+ RG D
Sbjct: 676 DMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKM---QPTNV-TLGRTILESRGLNYDD 731
Query: 787 YWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQ-MT 845
Y YW+ + AL+G + +FN +F AL++L S + + DK +E++GT+ +
Sbjct: 732 YMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQ---DKL----SELQGTKDSS 784
Query: 846 VRSSTEIVGE-EENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSV 904
V+ + + + N MILPF+PL++TF +NYYVD+P EMK +G E +LQLL +
Sbjct: 785 VKKNKPLDSSIKTNEDPGKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEI 844
Query: 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCE 964
+GAFRPGVLTALMG+SGAGKTTL+DVLAGRKT GYIEG+I+ISG+ K QETFARVSGYCE
Sbjct: 845 TGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCE 904
Query: 965 QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024
QTDIHSP +T+ ESL+YSAWLRL +++ + + FV +V+E +EL+ ++DALVG+ GV+G
Sbjct: 905 QTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSG 964
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084
LSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGRT+VCTIHQP
Sbjct: 965 LSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQP 1024
Query: 1085 SIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVS 1144
SI IFEAFDEL+L+KRGGR+IY+GPLG+ S +IEYF+ +PGV KI+D YNPATWMLEV+
Sbjct: 1025 SIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVT 1084
Query: 1145 NISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQPFFTQFKASF 1204
+ SVE +L +DFA+IY S L++ N EL+KELS P+ GSS+LHF ++Q ++ QFK+
Sbjct: 1085 SESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCL 1144
Query: 1205 WKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLG 1264
WK SYWR+P YN +R T + FGLLFW++G+K QQ+L +LGA+Y + LF+G
Sbjct: 1145 WKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVG 1204
Query: 1265 TTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEII 1324
N SA+ ER V YRER AGM+SA +YAL Q V+ ++ + +Q A +I
Sbjct: 1205 INNCTSALQYFETERNVMYRERFAGMYSAFAYALAQ----VVTEIPY---IFIQSAEFVI 1257
Query: 1325 YVTAQTVMYVLILYSMIGFKWELGKFF---LFFYFMWASFVIFTLYGMMIVAL 1374
+ Y +S + F W L F L F ++ A F+I M+ A+
Sbjct: 1258 VIYPMIGFYAS--FSKV-F-WSLYAMFCNLLCFNYL-AMFLISITPNFMVAAI 1305
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1755 (622.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 353/605 (58%), Positives = 445/605 (73%)
Query: 766 SINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVV 825
S N +LG A+L+ + D WYWIG+G ++GF+ LFN L ALT+LNP+ + V
Sbjct: 722 SDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVS 781
Query: 826 EEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMP 885
+E+ ++ RA G++ S ++ +RGM+LPF PL+++F+ +NYYVDMP
Sbjct: 782 KENTEENRAEN----GSKS---KSIDV--------KRGMVLPFTPLTMSFDNVNYYVDMP 826
Query: 886 AEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIK 945
EMK +GV +D+LQLL V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI+
Sbjct: 827 KEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR 886
Query: 946 ISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKI-FVDEVM 1004
ISG+PK+QETFAR+SGYCEQ DIHSP VT+ ESL+YSA+LRL +V TK K+ FVDEVM
Sbjct: 887 ISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEV-TKYEKMRFVDEVM 945
Query: 1005 ELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
ELVEL+ L+DA+VGLPG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 946 ELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1005
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAV 1124
RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAGPLG+ SHK+IEYF+A+
Sbjct: 1006 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAI 1065
Query: 1125 PGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSS 1184
GVPKIK+ YNPATWMLEVS+++ E +L +DFAE Y SSL+Q+N+ L+KELSTP G+S
Sbjct: 1066 HGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGAS 1125
Query: 1185 ELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSS 1244
+L+F T++SQ QFK+ WKQ+ +YWR P YN RF T A+ G +FW G K
Sbjct: 1126 DLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRE 1185
Query: 1245 RQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNF 1304
DL ++GAMY+ LF+G N+ S P+I VER+V+YRERAA M+SAL YAL Q
Sbjct: 1186 NANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQ---- 1241
Query: 1305 VIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILY--SMIGFKW-ELGKFFLFFYFMWASF 1361
V+ ++ V ++ Y T ++Y ++ + ++ F W F F YF +
Sbjct: 1242 VVCEIP-------YVLIQTTYYTL--IIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGM 1292
Query: 1362 VIFTL 1366
+ L
Sbjct: 1293 MTVAL 1297
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1675 (594.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 354/816 (43%), Positives = 505/816 (61%)
Query: 35 REVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTH 94
RE + P N + DEE+LRWAAI RLP+ ++G N IL + +
Sbjct: 19 RESFARPSNA---ETVEQDEEDLRWAAIGRLPSQ---RQGTHNAILR-----RSQTQTQT 67
Query: 95 LGMQDKKQLME-SILRIVEEDNERFLTRIRHRTDRVGIEI-PKIEVRYDHLSVD-GDVHV 151
G D + + ++ D E + + +D+ ++ I+ R D + ++ + V
Sbjct: 68 SGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEV 127
Query: 152 GSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSR--MTLLLGPPGA- 208
L +V T AL L V S+ + L + I+KP + + +L G
Sbjct: 128 RFENLNIEADVQAGT--RALPTLVNV-SRDFFERCLSSLR-IIKPRKHKLNILKDISGII 183
Query: 209 --GKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCA 266
G+ TL+L G L + ++ K+ + +G ITY G LN+F +RT A
Sbjct: 184 KPGRMTLLLGPPGSGKSTLLLALAG------KLDKSLKKTGNITYNGENLNKFHVKRTSA 237
Query: 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYE-LLAELSRREKQQGIKPDPEIDAFMKAV 325
YISQ D H E+TVRETLDF+ RC G + + +L+R EK++GI+P EIDAFMKA
Sbjct: 238 YISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAA 297
Query: 326 AVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMD 385
+V G++ S+ TDYVLK+LGLD+C+DTMVG++M RG+SGGQ+KRVTTGEM VG K L MD
Sbjct: 298 SVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMD 357
Query: 386 EISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGP 445
EISTGLDSSTTFQI K ++ VH+MD T+++ALLQPAPET+DLFDD+IL+SEG +VY GP
Sbjct: 358 EISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGP 417
Query: 446 RDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 505
R++V+ FFE +GF+ P RKGVADFLQEVTSKKDQ QYW ++PY++IPVSD F++
Sbjct: 418 REDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNS 477
Query: 506 HMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTF 565
G S L P+DK P+AL + K+ IS WE + CF RE LL+KR+ F+Y F+T
Sbjct: 478 KYGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTC 537
Query: 566 QLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYK 625
Q+ F+ L+ TVF +T + + GN+Y LFF L+++MFNG +EL + + RLPVFYK
Sbjct: 538 QVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYK 597
Query: 626 QRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHN 685
QRD+ F+PAW++++ W+LR+P S+L++ +W + Y+T+G AP+A RFF+ L F +H
Sbjct: 598 QRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQ 657
Query: 686 MALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQ 745
MAL L+R +A++ R VI N G+ K DI+P+ WG++VSP+ YGQ
Sbjct: 658 MALGLFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQ 717
Query: 746 TSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNF 805
+I V+EF RW PS +I++ T+G LLK R F + YWYWIGI LIG++ LFN
Sbjct: 718 RAIAVNEFTATRWMTPS---AISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNN 774
Query: 806 LFIAALTYLNPIGDSNSTVVEEDGDKKR--ASGNEV 839
+ AL YLNP+ + + V+++ ++ A N+V
Sbjct: 775 VVTLALAYLNPLRKARAVVLDDPNEETALVADANQV 810
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC87 | AB34G_ARATH | No assigned EC number | 0.6975 | 0.9636 | 0.9304 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.6819 | 0.9558 | 0.9178 | N/A | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6089 | 0.9508 | 0.9257 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6153 | 0.9472 | 0.9267 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6020 | 0.9493 | 0.9275 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6001 | 0.9472 | 0.9121 | N/A | no |
| Q8GU86 | PDR5_ORYSJ | No assigned EC number | 0.5980 | 0.9586 | 0.9250 | yes | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.5892 | 0.9486 | 0.9179 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6017 | 0.9586 | 0.9314 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5236 | 0.9422 | 0.9136 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00021655001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (1451 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1403 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-93 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-77 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-62 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-52 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-51 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-44 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-43 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-41 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-37 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-34 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-30 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-30 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-24 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 9e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-19 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-18 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-18 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-18 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-15 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-14 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-14 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-13 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-13 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-10 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-10 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-10 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-09 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-08 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 7e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 8e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-07 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-07 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-06 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-06 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-06 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 8e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-06 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-06 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 9e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 0.001 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.001 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 0.001 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.001 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.001 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.001 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.001 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.001 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.002 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.003 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 0.003 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.003 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.003 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.003 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.003 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 0.004 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.004 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.004 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.004 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.004 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1951 bits (5055), Expect = 0.0
Identities = 842/1421 (59%), Positives = 1050/1421 (73%), Gaps = 78/1421 (5%)
Query: 16 RGGQSISSGSHRSWASASIREVWNAPDNVFS---RSERQ-----DDEEELRWAAIERLPT 67
G S+ RS R N D VFS +S R+ +DEE L+WAAIE+LPT
Sbjct: 3 SRGGSMRRSISRS----VSRSSRNMED-VFSGGSQSRRRTSSVDEDEEALKWAAIEKLPT 57
Query: 68 YDRLKKGMLNQILED---GKVVKH-EVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIR 123
Y RL+ ++ +E+ G + H EVDVT L D+++ ++ + ++ EEDNE+FL + R
Sbjct: 58 YSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFR 117
Query: 124 HRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRD 183
+R DRVGI++P +EVR++HL+V+ D ++GSRALPTL N A N ESALG+L + +KK
Sbjct: 118 NRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTK 177
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
+ ILKD SGI+KPSRMTLLLGPP +GKTTL+LALAGKL +L+V
Sbjct: 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKV---------------- 221
Query: 244 QASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
SG+ITY G+ LNEFVP++T AYISQ+D+H G MTV+ETLDFS RC GVGTRY+LL+EL
Sbjct: 222 --SGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSEL 279
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
+RREK GI P+ E+D FMKA A+ G ++SL+TDY LK+LGLDIC DT+VGDEM RGISG
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG 339
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
GQKKRVTTGEM+VG K L MDEISTGLDSSTT+QI K L+Q+VH+ + T++++LLQPAP
Sbjct: 340 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP 399
Query: 424 ETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYW 483
ET+DLFDDIIL+SEGQIVY GPRD++LEFFE GFKCPERKG ADFLQEVTSKKDQEQYW
Sbjct: 400 ETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYW 459
Query: 484 FRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFR 543
+N+PYRYI VS+F E FKSFH+G QL ++L VP+DKSQ+H AALV KY + K EL +
Sbjct: 460 ADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519
Query: 544 ACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLL 603
AC+ +EWLLMKRN+FVY+FKT Q+ ++ I TVF RTEM + E G Y GAL FS++
Sbjct: 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMI 579
Query: 604 NIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYT 663
MFNG AEL++ + RLPVFYKQRD LF+P W F LP ++L IP+S+++S +W+V+TYY+
Sbjct: 580 INMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYS 639
Query: 664 IGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFII 723
IGFAP ASRFFKQ L F I MA ++R IA++ RT +I N G LLL+F LGGFI+
Sbjct: 640 IGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFIL 699
Query: 724 AKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRW-DVPSGDRSINERTLGKALLKRRGF 782
K +I + EW Y+VSP+ YG ++ V+E RW + + D N LG A+L
Sbjct: 700 PKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD---NSTRLGTAVLNIFDV 756
Query: 783 YNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEE-------DGDKKRAS 835
+ D WYWIG+GAL+GF+ LFN LF ALTYLNP+G + + EE + D S
Sbjct: 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816
Query: 836 -----GNEVEGTQMTVRSSTEIVGEEEN---------APRRGMILPFRPLSLTFNQMNYY 881
GN + S+ E + + + AP+RGM+LPF PL+++F+ +NY+
Sbjct: 817 LSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYF 876
Query: 882 VDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 941
VDMPAEMK +GV EDRLQLL V+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE
Sbjct: 877 VDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 936
Query: 942 GDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVD 1001
GDI+ISG+PKKQETFAR+SGYCEQ DIHSP VT+ ESL+YSA+LRL +V +++ +FVD
Sbjct: 937 GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVD 996
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
EVMELVEL L+DA+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 997 EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1056
Query: 1062 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYF 1121
IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIY+GPLGR SHK+IEYF
Sbjct: 1057 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYF 1116
Query: 1122 EAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEP 1181
EA+PGVPKIK+ YNPATWMLEVS+++ E +LG+DFAE Y +SSL+QRN+ L+KELSTP P
Sbjct: 1117 EAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPP 1176
Query: 1182 GSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQ 1241
G+S+L+F T+YSQ + QFK+ WKQ+W+YWR+P YN +RF T A+ G +FW G
Sbjct: 1177 GASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGT 1236
Query: 1242 KSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQN 1301
K S DL ++GAMY+ LF+G N + P++ VERTV+YRERAAGM+SAL YA+
Sbjct: 1237 KRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA-- 1294
Query: 1302 RNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASF 1361
QV EI YV QT Y LI+Y+M+ F+W KFF F++ + SF
Sbjct: 1295 ----------------QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338
Query: 1362 VIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPR 1402
+ FT YGMM V+LTP QQVA I + F L+NLF+GF IPR
Sbjct: 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPR 1379
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1150 bits (2976), Expect = 0.0
Identities = 395/1356 (29%), Positives = 611/1356 (45%), Gaps = 152/1356 (11%)
Query: 112 EEDNERFLTRIRHRTDRVGIEIP--KIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIES 169
E + + ++ R D I K+ V Y +LS G V S PT N L +
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 170 ALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRF 229
L + ILK + G++KP +T++LG PG+G +TL+ +A
Sbjct: 61 GFRKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG------ 113
Query: 230 QSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRT--CAYISQHDLHHGEMTVRETLDFS 287
F I G ITY G E Y ++ D+H +TV ETLDF+
Sbjct: 114 ----FHI-------GVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFA 162
Query: 288 GRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347
RC R + ++ + + D + GL
Sbjct: 163 ARCKTPQNRPDGVSREEYAKH--------------------------IADVYMATYGLSH 196
Query: 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
+T VG++ RG+SGG++KRV+ E +G AK+ D + GLDS+T + + LK
Sbjct: 197 TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSA 256
Query: 408 HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVA 467
+I+D T +VA+ Q + + Y+LFD +I++ EG +Y GP D ++FE+MGFKCP+R+ A
Sbjct: 257 NILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTA 316
Query: 468 DFLQEVTSKKDQEQYW--FRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQT- 524
DFL +TS + Q + K P +F +++ QL ++ D+
Sbjct: 317 DFLTSLTSPA-ERQIKPGYEKKVP---RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372
Query: 525 -------------HP-AALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFM 570
Y +S + C AR +L MK N +F F M
Sbjct: 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIM 432
Query: 571 SLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHL 630
+LI +VF+ + D GALFF++L F+ + E++ P+ K R +
Sbjct: 433 ALILSSVFYNLPKNTSD---FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489
Query: 631 FYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPL 690
Y A A+ + IP +++S ++ ++ Y+ + F A RFF L F L
Sbjct: 490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHL 549
Query: 691 YRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILV 750
+R I A+ +T LL + GF I + + + +W YYV+P+ Y S++V
Sbjct: 550 FRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609
Query: 751 DEFLDGRWD----VPSGDRSIN-----------------ERTLGKALLKRRGFYNDSYWY 789
+EF R++ VPSG N + G LK Y +S
Sbjct: 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNS-HK 668
Query: 790 WIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSS 849
W G +IGF+ F F++I + +V G KRA + +
Sbjct: 669 WRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRA------------KKA 716
Query: 850 TEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTE-----------GVGEDRL 898
E +N G +L L+ + +N DM E + + +++
Sbjct: 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKR 776
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
+L++V G +PG LTALMG SGAGKTTL++VLA R T G I G ++ +F R
Sbjct: 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
GY +Q D+H P T+ ESL +SA+LR V ++ +V+EV++L+E++ DA+VG
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ +
Sbjct: 897 VPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPA 1137
+CTIHQPS +FE FD LLL+++GG+ +Y G LG SH +I YFE G PK + NPA
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPA 1014
Query: 1138 TWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPT---KYSQ 1194
WMLEV + D+ E++ NSS +Q + + L + + + P KY+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 1195 PFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLG 1254
+ QFK W+ + YWR P Y +F +T A+F G F+ K S Q LQN +
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFF-KVGTSL--QGLQNQMF 1131
Query: 1255 AMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHS 1314
A++ + P + RER + FS L++
Sbjct: 1132 AVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAA--------------- 1176
Query: 1315 LMLQVAVEIIYVTAQTVMYVLILYSMIGFKWEL-------GKFFLFFYFMWASFVIFTLY 1367
Q+ VEI Y ++ I Y +GF W + LF+ F+ F+
Sbjct: 1177 ---QITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTL 1233
Query: 1368 GMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPRE 1403
G M+++ P A ++ S + F G + P
Sbjct: 1234 GQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPS 1269
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = 5e-98
Identities = 111/239 (46%), Positives = 145/239 (60%), Gaps = 47/239 (19%)
Query: 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMD 929
LT+ +NY V + + QLL+++SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 930 VLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989
VLAGRKT G I G+I I+G P + F R +GY EQ D+HSP++T+ E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 990 DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLL+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 4e-93
Identities = 157/517 (30%), Positives = 252/517 (48%), Gaps = 44/517 (8%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKKQET 955
R LL +VSG +PG L A+MG SGAGKTTLM+ LA R G G + ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
+S Y +Q D+ P +T+ E L++ A LR+ V K+++ VDEV++ + L+ +
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 1016 LVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1074
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1075 RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAY 1134
+T++CTIHQPS ++FE FD+++LM GRV Y G + + +F + G P + Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDL-GHP-CPENY 269
Query: 1135 NPATWMLEVSNISVENQLG--VDFAEI---YANSSLHQRNQELIKELSTPEPG---SSEL 1186
NPA + ++V + ++ +I +A S + + S G SE
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSEN 329
Query: 1187 HFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQ 1246
Y+ ++TQF A + + S R+P +R + T AI GL++ GQ + Q
Sbjct: 330 MEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYL--GQGLT-Q 386
Query: 1247 QDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVI 1306
+ +QN+ GA++ + N I V E V+ RE +G++ +Y L +
Sbjct: 387 KGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKT----- 441
Query: 1307 RKLTNEHSLMLQVAVEIIYVTAQTV---MYVLILYSMIGFKWELGKFFLFFYFMWASFVI 1363
I + + ++ I Y MIG + F F + + +
Sbjct: 442 ----------------IAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANV 485
Query: 1364 FTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMI 1400
T +G +I +A V F+ + LF GF I
Sbjct: 486 ATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFI 522
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 5e-77
Identities = 98/239 (41%), Positives = 142/239 (59%), Gaps = 45/239 (18%)
Query: 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMD 929
++L+F + V + QLL +VSG +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 930 VLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989
LAGR+TG + G++ I+G P + +F ++ GY Q DI P +T+ E+L+++A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 990 DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
EPTSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+LLL+ + GRVIY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 2e-62
Identities = 153/635 (24%), Positives = 268/635 (42%), Gaps = 78/635 (12%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+LK+VSG+ KP + ++G GAGKTTLM ALA + + ++
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG----------------- 81
Query: 245 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
SG + G ++ + AY+ Q DL +TVRE L F + ++
Sbjct: 82 -SGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQ-------AHLRMPRRVT 133
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR-RGISG 363
++EK++ + D VL+ LGL CA+T +G R +G+SG
Sbjct: 134 KKEKRERV------------------------DEVLQALGLRKCANTRIGVPGRVKGLSG 169
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
G++KR+ L+ +L DE ++GLDS + + + LK + T+I + QP+
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSS 228
Query: 424 ETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYW 483
E ++LFD IIL++EG++ Y G D + FF +G CPE ADF +V +
Sbjct: 229 ELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG---- 284
Query: 484 FRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQ---THPAALVKEKYGISKWE 540
+N+ I + F +G+ + + + K+ + Y S W
Sbjct: 285 -SENESRERI--EKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWT 341
Query: 541 LFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMS-VGDLEGGNKYFGALF 599
F A R WL + R+ + + Q +++ ++ ++ G GALF
Sbjct: 342 QFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN----GALF 397
Query: 600 FSLLNIMFNGMAELSMTV--LRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWI 657
L N+ F + + V LPVF ++ Y A+ L + +PL ++ ++
Sbjct: 398 LFLTNMTFQNVFP-VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFT 456
Query: 658 VLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFS 717
+TY+ IG A+ F + N+A I+ + + +G ++
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516
Query: 718 LGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTL----- 772
GGF I D I + +W Y+S YG +L++++ DV + + + T
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS----DVDNIECTSANTTGPCPSS 572
Query: 773 GKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLF 807
G+ +L+ F N + + ++ F F F
Sbjct: 573 GEVILETLSFRNADLYLDLIGLVILIFFFRLLAYF 607
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-52
Identities = 77/213 (36%), Positives = 123/213 (57%), Gaps = 8/213 (3%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKKQETF 956
++L+ VS G + A++G SG+GKTTL+D ++GR GG G I +G P+K + F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTK-KRKIFVDEVMELVELKPLRDA 1015
+ Y Q DI P +T+ E+L Y+A LRL ++K D ++ + L +
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN 139
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
LV G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R
Sbjct: 140 LVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 1076 TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V+ TIHQP D+F FD +LL+ G ++Y+G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (488), Expect = 6e-51
Identities = 142/523 (27%), Positives = 265/523 (50%), Gaps = 59/523 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L+ V+G PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR- 141
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
+G+ Q DI PH+T+ E+L++ + LRL + +++ + + V+ + L + ++G
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATW 1139
++HQPS +++ FD +L++ GR ++ G + + YFE+V P NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSE-GRCLFFG----KGSDAMAYFESVGFSPSF--PMNPADF 314
Query: 1140 MLEVSN-------ISVENQLGVDFAEIYANSSL--------------HQRNQELIKELST 1178
+L+++N +S + V + + + ++L Q N + ST
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1179 PEPGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWD 1238
E SS+ +F QF + ++ ++ +N +R A+ GL++W
Sbjct: 375 KEHRSSD----RISISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWW- 428
Query: 1239 KGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYAL 1298
S +D+Q+ LG ++ + +F G + +++ V ER ++ +ERA+GM++ SY
Sbjct: 429 ----HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSY-- 482
Query: 1299 GQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMW 1358
F+ R + L +++ + I++T + Y M G K ELG F L +
Sbjct: 483 -----FMARIVG---DLPMELILPTIFLT--------VTYWMAGLKPELGAFLLTLLVLL 526
Query: 1359 ASFVIFTLYGMMI-VALTPGQQVATIVLSFFLALWNLFAGFMI 1400
++ G+ + A+ ++ +TIV LA + L GF +
Sbjct: 527 GYVLVSQGLGLALGAAIMDAKKASTIVTVTMLA-FVLTGGFYV 568
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-44
Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 16/275 (5%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KKQETF 956
L VS PG + L+G +GAGKTTL+ +LAG G+I + GY K+
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKV 76
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
R GY Q P +T+ E+L + A L S + ++R ++E++EL L+ +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP---LGRESHKLIEYFEAVPGVPKIKDA 1133
+ + E D ++++ G++I G L + + +
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTPEELKEKFGGKGVIELEPERLELAELL 247
Query: 1134 YNPATWMLEVSNISVENQLGVDFAEIYANSSLHQR 1168
E + L + +I +
Sbjct: 248 EGLKLVKGEEELAEILEALLEEGVKIESIEVKEPS 282
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 9e-43
Identities = 152/591 (25%), Positives = 239/591 (40%), Gaps = 97/591 (16%)
Query: 177 VPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLI 236
V KK IL +V G VKP +T L+G GAGKTTL+ LA ++ +
Sbjct: 769 VKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG-----------V 817
Query: 237 IRIWKTEQASGKITYCGHELNE-FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 295
I G G L+ F QR+ Y+ Q DLH TVRE+L FS
Sbjct: 818 I-------TGGDRLVNGRPLDSSF--QRSIGYVQQQDLHLPTSTVRESLRFSAY------ 862
Query: 296 RYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD 355
+S+ EK M+ V + V+KLL ++ AD +VG
Sbjct: 863 -LRQPKSVSKSEK-------------MEYV-----------EEVIKLLEMESYADAVVG- 896
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLL-MDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
G++ Q+KR+T G LV K+LL +DE ++GLDS T + ICK ++++ +
Sbjct: 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAI 955
Query: 415 IVALLQPAPETYDLFDDIILISEG-QIVYHGP----RDNVLEFFEQMGF-KCPERKGVAD 468
+ + QP+ ++ FD ++L+ +G Q VY G ++ +FE+ G KCPE A+
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015
Query: 469 FLQEVTS-------KKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDK 521
++ EV +D + W R + Y+ + + L K
Sbjct: 1016 WMLEVIGAAPGAHANQDYHEVW-RNSSEYQAV---------------KNELDRLEAELSK 1059
Query: 522 SQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT-FMSLICMTVFFR 580
++ KY S W F+ R + R + Y++ F LT F +L FF+
Sbjct: 1060 AEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWR-TPDYLYSKFFLTIFAALFIGFTFFK 1118
Query: 581 TEMSVGDLEGGNKYFGA-LFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFAL 639
S+ L+ N+ F + L N + + L ++R + AF
Sbjct: 1119 VGTSLQGLQ--NQMFAVFMATVLFNPLIQQYLPPFVAQRDL-YEVRERPSRTFSWLAFIA 1175
Query: 640 PIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASR--FFKQYLAYFCIHNMALPLYRF---I 694
+ IP +L+ TI+ + YY +GF AS+ + F + + LY
Sbjct: 1176 AQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ 1235
Query: 695 AAIGRTEVITNALGTFALLLIFSLG--GFIIAKDDIEPFLEWGYYVSPMMY 743
I NA +LL L G + + F + Y SP Y
Sbjct: 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY 1286
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-41
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 8/216 (3%)
Query: 540 ELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGAL 598
+A RE+L R+ + +++ Q M+L+ TVF GG G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 599 FFSLLNIMFNGMAELSMTVLR-LPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWI 657
FFS+L F+ + +S +R V ++ Y A+ L ++ +P+SLL + I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 658 VLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFS 717
++ Y+ +G SRFF L A L FIAA+ + + +G LL +
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 718 LGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEF 753
L GF I D + +L+W YY++P+ Y ++ +EF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-39
Identities = 73/268 (27%), Positives = 121/268 (45%), Gaps = 54/268 (20%)
Query: 177 VPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLI 236
+ + +IL DVS V+ ++ +LG G+GKTTL+ A++G++
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG------------- 59
Query: 237 IRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 296
SG+I + G Q+ AY+ Q D+ +TVRETL ++
Sbjct: 60 -----GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL------ 108
Query: 297 YELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356
R+ I+ V D +L+ A T +G
Sbjct: 109 ------RLPRKSSDAIR------------------KKRVEDVLLRD-----LALTRIGGN 139
Query: 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+ +GISGG+++RV+ L+ KVL++DE ++GLDS T + L Q+ + +I+
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVIL 198
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHG 444
+ QP + + LFD I+L+S G+IVY G
Sbjct: 199 TIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 9e-39
Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 69/320 (21%)
Query: 170 ALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRF 229
+ + +L D L VS V+P + LLGP GAGKTTL+ LAG L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT----- 58
Query: 230 QSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFS 287
SG+I G+++ + + R Y+ Q + E+TVRE L+F
Sbjct: 59 ----------------SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFF 102
Query: 288 GRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347
R G LS+ E ++ I + +L+L GL+
Sbjct: 103 ARLYG----------LSKEEAEERI------------------------EELLELFGLED 128
Query: 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
A+ V R +SGG K+R++ L+ ++L++DE ++GLD + +I + L+++
Sbjct: 129 KANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183
Query: 408 HIMDVTMIVA--LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKC--PER 463
VT++++ +L+ E +L D +I++++G+I+ G + + E F G PER
Sbjct: 184 KEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPER 240
Query: 464 KGVADFLQEVTSKKDQEQYW 483
+A+ L+ + K +E+
Sbjct: 241 LELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-37
Identities = 41/91 (45%), Positives = 60/91 (65%)
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
G+E RGISGG++KRV+ E LV A VL D + GLDSST +I K ++ M ++ T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 414 MIVALLQPAPETYDLFDDIILISEGQIVYHG 444
V+L Q + E YDLFD ++++ EG+ +Y+G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-36
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 25/207 (12%)
Query: 1198 TQFKASFWKQYWSYWRNPQYNAI-RFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAM 1256
TQ KA +++ WR+P + R + +A+ FG +F N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLL 56
Query: 1257 YSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLM 1316
+ LF ++ PV ER V RE A+ ++S +Y L +
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAK---------------- 100
Query: 1317 LQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTP 1376
+ VE+ Q ++++LI+Y M+G +FFLF + + + + G+ I AL P
Sbjct: 101 --ILVELPISLLQAIIFLLIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAP 156
Query: 1377 GQQVATIVLSFFLALWNLFAGFMIPRE 1403
+ A+ + L L +GF IP +
Sbjct: 157 SFEDASQIGPLLLLPLLLLSGFFIPVD 183
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-36
Identities = 163/664 (24%), Positives = 289/664 (43%), Gaps = 122/664 (18%)
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
+Q+L++V+G +P +T L+G GAGKTTLM LAG+ KT
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR--------------------KTG 932
Query: 244 -QASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G I G + R Y Q+D+H ++TVRE+L +S
Sbjct: 933 GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYS--------------- 977
Query: 303 LSRREKQQGIKPDPEIDAFMK-AVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
AF++ V+ +E + D V++L+ LD D +VG G+
Sbjct: 978 -----------------AFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
S Q+KR+T LV ++ MDE ++GLD+ + + ++ V T++ + QP
Sbjct: 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQP 1079
Query: 422 APETYDLFDDIILISEG-QIVYHGP----RDNVLEFFEQM-GF-KCPERKGVADFLQEVT 474
+ + ++ FD+++L+ G Q++Y GP ++E+FE + G K E+ A ++ EV+
Sbjct: 1080 SIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS 1139
Query: 475 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQ---LASDLRVPYDKSQTHPAA--- 528
S + + DF E +KS + Q+ L +L P P A
Sbjct: 1140 SLAAEVKLGI------------DFAEHYKSSSLYQRNKALVKELSTP------PPGASDL 1181
Query: 529 LVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRT---EMSV 585
+Y S W F++C ++W R+ + + F +L+ T+F++ +
Sbjct: 1182 YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNA 1241
Query: 586 GDLEGGNKYFGALFFSLLNIMFNGMAELS-MTVLRLPVFYKQRDHLFYPAWAFALPIWVL 644
DL GA++ ++L + N + + M + VFY++R Y A +A+ V
Sbjct: 1242 NDL---TMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVC 1298
Query: 645 RIPLSLLDSTIWIVLTYYTIGFAPAASRFFK---------QYLAYFCIHNMALPLYRFIA 695
IP L+ +T + ++ Y + F A++FF Y Y+ + ++L + +A
Sbjct: 1299 EIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVA 1358
Query: 696 AIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLD 755
AI A + L +FS GF I + I + W Y++ P+ + ++V ++ D
Sbjct: 1359 AI-------FAAAFYGLFNLFS--GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGD 1409
Query: 756 --GRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIG--IGALIGFSFLFNFLFIAAL 811
VP G + T+ + G+ D ++G L+GF+ F F+F +
Sbjct: 1410 VEDTIKVPGGA---PDPTIKWYIQDHYGYDPD----FMGPVAAVLVGFTVFFAFIFAFCI 1462
Query: 812 TYLN 815
LN
Sbjct: 1463 RTLN 1466
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 38/226 (16%)
Query: 888 MKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIK 945
T G G ++ +L SG +PG + ++G G+G +TL+ LA R T G +EGDI
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIH 68
Query: 946 ISGYPKKQ--ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV 1003
+G P K+ E + Y + D+H P +T+ E+L ++ + +E
Sbjct: 69 YNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------GNEF 115
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
V G+S +RKR++IA LV+ S++ D T GLD+ A +
Sbjct: 116 ------------------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157
Query: 1064 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
++ +R D T +++Q S +I++ FD++L++ GR IY G
Sbjct: 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-30
Identities = 143/580 (24%), Positives = 248/580 (42%), Gaps = 98/580 (16%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
IL V+G+ P + +LGP G+GK+TL+ ALAG R Q N F
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG--------RIQGNNF----------- 123
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
+G I + + + +RT +++Q D+ + +TVRETL F + L L++
Sbjct: 124 TGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTK 175
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
+EK LV + V+ LGL C +T++G+ RGISGG+
Sbjct: 176 QEK------------------------ILVAESVISELGLTKCENTIIGNSFIRGISGGE 211
Query: 366 KKRVTTG-EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424
+KRV+ EML+ + +L++DE ++GLD++ +++ L + T++ ++ QP+
Sbjct: 212 RKRVSIAHEMLINPS-LLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSR 269
Query: 425 TYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWF 484
Y +FD ++++SEG+ ++ G + + +FE +GF ADFL ++ + Q
Sbjct: 270 VYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVS 329
Query: 485 RKNQPYRYIPVSDFVEGFKSFHMGQQLASDLR-------VPYDKSQTHPAALVKE----- 532
+ +P V + + LA ++ P ++ +A KE
Sbjct: 330 EREKPNVK---QSLVASYNTL-----LAPKVKAAIEMSHFPQANARFVGSASTKEHRSSD 381
Query: 533 KYGISKW-ELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGG 591
+ IS W F R K SF + FQ+ +L+ +++ + D
Sbjct: 382 RISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMWWHS-----DFRDV 435
Query: 592 NKYFGALFFSLLNIMFNGMAELSMTVLRLP----VFYKQRDHLFYPAWAFALPIWVLRIP 647
G LFF + F G+ +V P +F K+R Y ++ + V +P
Sbjct: 436 QDRLGLLFFISI---FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLP 492
Query: 648 LSLLDSTIWIVLTYYTIGFAPAASRFFKQ---YLAYFCI-HNMALPLYRFIAAIGRTEVI 703
+ L+ TI++ +TY+ G P F L Y + + L L I + I
Sbjct: 493 MELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTI 552
Query: 704 TNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMY 743
T +L GGF + K + + W Y+S Y
Sbjct: 553 V----TVTMLAFVLTGGFYVHK--LPSCMAWIKYISTTFY 586
|
Length = 659 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKK 952
+ + L VS PG+ L+G +GAGKTTLM +LA + G I + P+K
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK 69
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
R GY Q P+ T+ E L Y AWL+ + K R VDEV+ELV L
Sbjct: 70 ---LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR---VDEVLELVNLGDR 123
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 124 AKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELG 177
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
R V+ + H D+ +++ ++ G++++ G
Sbjct: 178 EDRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-30
Identities = 44/119 (36%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 176 LVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFL 235
+ + ILKD SG+VKP M L+LG PG+G +TL+ ALA + N+ V
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-------- 63
Query: 236 IIRIWKTEQASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 292
G I Y G EF Y+S+ D+H +TVRETLDF+ RC G
Sbjct: 64 ----------EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFA--RV 959
+S G + L+G +GAGKTT + +L G R T G I+GY + + A +
Sbjct: 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQS 76
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
GYC Q D +T+ E L + A L+ + K+ V+ ++ ++ L +
Sbjct: 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE---VELLLRVLGLTDKANKRAR- 132
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++
Sbjct: 133 ----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIIL 187
Query: 1080 TIHQPSIDIFEAF-DELLLMKRGGRVIYAG 1108
T H S+D EA D + +M G++ G
Sbjct: 188 TTH--SMDEAEALCDRIAIMSD-GKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET--- 955
L +S + G ++G +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 956 FARVSGYCEQTDIHSP-----HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
R G Q +P T+ E + + + + ++R V+E +ELV L+
Sbjct: 73 LRRKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLE 125
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
LRD LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
G+T++ H + E D +++++ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-26
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 59/203 (29%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
L +VS + G + AL+G +G+GK+TL+ +AG G+I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
+ +R+I
Sbjct: 71 L-----------------------------------RRRIGY------------------ 77
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 ---VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134
Query: 1079 CTIHQPSIDIFEAFDELLLMKRG 1101
H P A D ++++K G
Sbjct: 135 IVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 23/215 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L VS +PG A++G +GAGK+TL+ + G + T G I++ G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 959 VSGYCEQT---DIHSPHVTLYESLLYSAW--LRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ GY Q D P +++ + +L + L + + VDE +E V L L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G T++ H + + E FD +LL+ R V+ +G
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 31/224 (13%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----YPKKQE 954
+L +S + G +T ++G +G+GK+TL+ LAG G++ + G K+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE- 73
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLL-----YSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
A+ Y Q+ +T+YE +L + S D + V+E +EL+ L
Sbjct: 74 -LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI----VEEALELLGL 128
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
+ L D V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1070 -TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
+ G TVV +H D+ A D L+L+K G V P
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 23/219 (10%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
+L +S + G +TAL+G +GAGK+TL+ + G G+IKI G P ++
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 959 VSGYCEQT---DIHSPHVTLYE---SLLYSA--WLRLSSDVDTKKRKIFVDEVMELVELK 1010
GY Q D P +T+ + Y W R + D +K VDE +E V ++
Sbjct: 76 RIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGME 130
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
LRD +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 131 DLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
G+TV+ H + + FD ++ + R +I +GP
Sbjct: 186 RQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 9e-24
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 766 SINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTV 824
S + TLG+A+LK RG + ++YWYWIG+GAL+GF+ LFN LF ALTYLNP+G S + V
Sbjct: 6 SGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKSQAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 19/109 (17%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
Q+LK+VSG KP +T ++GP GAGK+TL+ ALAG+
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT-------------------GLG 63
Query: 245 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 293
SG++ G L++ ++ Y+ Q D+ H +TVRETL F+ + G+
Sbjct: 64 VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 3e-23
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 892 GVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISG 948
VG +L +S + G + ++G +GAGK+TL+ LAG + + G I ++
Sbjct: 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65
Query: 949 YPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
K+ AR Y Q +EL+
Sbjct: 66 LSPKE--LARKIAYVPQ-------------------------------------ALELLG 86
Query: 1009 LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
L L D N LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 87 LAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1069 NTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G+TVV +H ++ D ++L+K GR++ G
Sbjct: 142 RLARERGKTVVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 6e-22
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 20/221 (9%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 945
KT G G +++Q L VS + G A++G SG+GK+TL+++L G R T G +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 946 ISGYPKKQETFARVS--GYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKRKIFVD 1001
IS +K+ R G+ Q+ + P +T E++ L + ++R +
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRER---AE 122
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
E++E V L + + LS Q++R+ IA L +P II DEPT LD+
Sbjct: 123 ELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 1062 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
VM +R + G T+V H P ++ E D ++ ++ G
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQET 955
+L+ VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP 73
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R G Q PH+T+ E++
Sbjct: 74 LRRRIGMVFQDFALFPHLTVLENIAL---------------------------------- 99
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 1074
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G
Sbjct: 100 --------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 1075 RTVVCTIHQPSIDIFEAF---DELLLMKRG 1101
TVV H D+ EA D +++++ G
Sbjct: 152 ITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-21
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 26/225 (11%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE 954
R L VS G L+G +G+GK+TL+ +L G G++ + G E
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSE 71
Query: 955 T----FARVSGYCEQTDIHSPHV-----TLYESLLYSAWLRLSSDVDTKKRKIFVDEVME 1005
+ G Q +P T+ + + + L + + + V E +E
Sbjct: 72 KSLLELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALE 124
Query: 1006 LVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
LV L+ L D LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 125 LVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 1066 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
++ + G+T++ H + E D ++++ G+++ G
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-21
Identities = 33/86 (38%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
RG+SGG++KRV+ LV +L +DE ++GLDSS+ Q+ L+++ T+I ++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSI 168
Query: 419 LQPAPETYDLFDDIILISEGQIVYHG 444
QP+ E ++LFD ++L+S+G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 6e-21
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 23/210 (10%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQET 955
+ L +S PG AL+G SG GKTTL+ ++AG R G I ++G P ++
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-- 71
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R G Q PH+T+ E++ + LR + + R V E++ELV L+ L +
Sbjct: 72 --RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNR 126
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTG 1074
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 127 YP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 1075 RTVVCTIHQPSIDIFEAF---DELLLMKRG 1101
T + H D EA D + +M G
Sbjct: 182 ITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 90.5 bits (226), Expect = 9e-21
Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KKQETF 956
L +S G + L+G +GAGKTTL+ ++ G + G+IK+ G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
R GY + ++T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRG 1101
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFA 957
+L +S G + AL G +GAGKTTL +LAG +++ G I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
+ GY Q L+ + L L + + V++ ++L L++
Sbjct: 71 KSIGYVMQD----VDYQLFTDSVREE-LLLGLK-ELDAGNEQAETVLKDLDLYALKERH- 123
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+ V
Sbjct: 124 --P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRG 1101
+ H + + D +LL+ G
Sbjct: 180 IVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 945
K G+G ++++ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 946 ISGYPKKQETFARVS--GYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKRKIFVD 1001
++ +K+ R G+ Q + P +T+ E++ + S K+ +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
EV+ L + + + LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 127 EVLGLEDRLLKKK-------PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1062 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103
V+ +R + G+T++ H P ++ + D ++ +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-19
Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-- 951
D L ++ + G LTAL+G SGAGK+TL+++L G +G+I+++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 952 -KQETFARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV 1007
E + + + Q +P++ T+ E++ L+ + + + ++
Sbjct: 388 LSPEAWRKQISWVSQ----NPYLFAGTIRENI------LLARPDASDEE---IIAALDQA 434
Query: 1008 ELKPLRDALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
L GL V GLS Q +RL +A L++ S++ +DEPT+ LDA I
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+++ ++ +TV+ H+ D +A D ++++ GR++ G
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDN-GRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-19
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 34/213 (15%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--------EGDIKISGYPKKQETFARV 959
+T + G SGAGK+TL+ +AG + GG I + KI+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
G Q PH+ + E+L + L+ + ++ +I VDE+++L+ L L +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG--LKRKRN---REDRISVDELLDLLGLDHLLNR---- 127
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1078
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 1079 CTIHQPSIDIFEAF---DELLLMKRGGRVIYAG 1108
H S EA D +++M GR+ Y G
Sbjct: 187 FVTHDLS----EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-19
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQE 954
+Q + VS +PG +T L+G +GAGKTT + +LAG G+ + G+ +E
Sbjct: 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKE 72
Query: 955 TFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
R G+ + +T E+L Y A L + R ++E+ + + ++ L
Sbjct: 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEEL 129
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
D VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R
Sbjct: 130 LDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G+ ++ + H ++ D ++++ R GRV+Y G
Sbjct: 185 LGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 1e-18
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 78/270 (28%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
L D+S +K L++GP G+GK+TL+ L G L
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT--------------- 54
Query: 240 WKTEQASGKITYCGHELNEFVPQ---RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGT 295
SG++ G +L + + R + Q+ D TV E + F LG+
Sbjct: 55 ------SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-- 106
Query: 296 RYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD 355
P+ EI+ + L+L+GL+ D
Sbjct: 107 ------------------PEEEIEE--------------RVEEALELVGLEGLRDRSPFT 134
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
+SGGQK+RV +L +LL+DE + GLD + ++ + LK++ T+I
Sbjct: 135 -----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTII 188
Query: 416 VALLQPAPETYDL------FDDIILISEGQ 439
+ T+DL D +I++ +G+
Sbjct: 189 IV-------THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETF 956
++L +S + G + +G +GAGKTT M ++ G + G I Y K E
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEAL 71
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
R+ E + P++T E+L A L RK +DEV+++V LK
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLG-------IRKKRIDEVLDVVGLKDSAKKK 123
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V+ + H S +I + D + ++ G++I G
Sbjct: 179 VLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-18
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKK 952
++L ++ A G + AL+G +GAGK+TL+ L G R G + D + Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKI---------FVDEV 1003
R P + L++A + DV + V E
Sbjct: 62 GLLERRQR---VGLVFQDP-----DDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREA 111
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+ V LR+ LS ++KR+ IA + P ++ +DEPT+GLD +
Sbjct: 112 LTAVGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 1064 MRTVRNTVDTGRTVVCTIH 1082
+ +R G TVV + H
Sbjct: 167 LAILRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 38/222 (17%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KKQETF 956
+ V+ R G + +G +GAGKTT + +L R T G +++GY ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKV 64
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAW--LRLSSDV-----DTKKRKIFVDEVMELVEL 1009
R G Q + ++ E L + L + + D + + +E++EL EL
Sbjct: 65 RRSIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEERA--EELLELFEL 114
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
D VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 115 GEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169
Query: 1070 TVDTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYAG 1108
+ G T++ T H + EA D + ++ GR+I G
Sbjct: 170 LKEEGVTILLTTH----YMEEADKLCDRIAIIDH-GRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 25/209 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
R Q PH+T+YE++ + LR + KR V EV +L+ L+ L +
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1075
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1076 TVVCTIHQPSIDIFEA---FDELLLMKRG 1101
T + H D EA D +++M G
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 65/274 (23%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
+ +L+D+S V+ +T L+GP GAGK+TL+ A+ G L
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-------------------- 54
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQH-DLHHG-EMTVRETLDFSGRCLGVGTRYEL 299
+ +SG+I G + + + Y+ Q + +TV++ + LG +
Sbjct: 55 -KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL-----LGRYGKKGW 108
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
L++++K++ D L+ +G++ D +G+
Sbjct: 109 FRRLNKKDKEKV-------------------------DEALERVGMEDLRDRQIGE---- 139
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL- 418
+SGGQK+RV L +LL+DE TG+D + +I LK++ T+++
Sbjct: 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG-KTVLMVTH 197
Query: 419 -LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
L FD +I + ++ GP + VL
Sbjct: 198 DLGLVM---AYFDRVICL-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 4e-18
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 22/218 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKKQE---T 955
L VS RPG AL+G +GAGK+TL +L T Y+ EG I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
AR+ G Q +++ ++L Y A L S + + R + E++ + L D
Sbjct: 73 LARL-GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1074
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1075 RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112
+V+ H +D EA D L+++ R GRV+ G
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
L VS + PG AL+G SGAGK+TL+ L G T G + I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 958 RV-SGYCEQTDIHSPHVTLYESLL---------YSAWLRLSSDVDTKKRKIFVDEVMELV 1007
R G Q +++ E++L + + L + K++ +E V
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALERV 132
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
L LS Q++R+ IA L+ P +I DEP + LD ++ VM +
Sbjct: 133 GLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 1068 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ + G TV+ ++HQ D+ + + ++ + GR+++ GP
Sbjct: 188 KRINREEGITVIVSLHQV--DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 5e-18
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 22/122 (18%)
Query: 177 VPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLI 236
VP K Q+L ++SG VKP +T L+G GAGKTTL+ LAG+ +
Sbjct: 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---------- 62
Query: 237 IRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG--RCLGVG 294
+G+I G L++ QR+ Y+ Q D+H +TVRE L FS R L V
Sbjct: 63 ---------TGEILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
Query: 295 TR 296
R
Sbjct: 113 QR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 6e-18
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 30/212 (14%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
+ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEK 76
Query: 958 RVSGYCEQTDIHS----PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
R G Q S PH+T+ E++ + L++ + + K V+E +ELV L+
Sbjct: 77 RPIGMVFQ----SYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFA 130
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1072
D + LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ +
Sbjct: 131 DRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185
Query: 1073 TGRTVVCTIHQPSIDIFEAF---DELLLMKRG 1101
G T V H D EA D + +M G
Sbjct: 186 LGITFVYVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 7e-18
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 38/196 (19%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQ------ 953
VS + RPG + L+G +GAGKTTL ++++G R T G +G+ I+G P +
Sbjct: 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIARLGI 77
Query: 954 -ETFARVSGYCEQTDIHSPHVTLYESLL----------YSAWLRLSSDVDTKKRKIFVDE 1002
TF + P +T+ E+++ + + ++R +E
Sbjct: 78 GRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER---AEE 126
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
++E V L L D G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 127 LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181
Query: 1063 VMRTVRNTVDTGRTVV 1078
+ +R + G TV+
Sbjct: 182 LAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KK 952
Q L +++ PG A++G SGAGK+TL+ + G I + G KK
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLL---------YSAWLRLSSDVDTKKRKIFVDEV 1003
R G Q +T+ E++L + + L S+ D ++ ++ V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
L + R + LS Q++R+ IA L P +I DEP + LD + + V
Sbjct: 134 -GLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 1064 MRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
M ++ + G TV+ +HQ +D+ + + + ++ + G +++ G
Sbjct: 185 MDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 9e-18
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 22/219 (10%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP-K 951
++Q + VS G +T L+G +GAGKTTL+ ++A + G + I G
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTV 67
Query: 952 KQETFAR--VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
+ +F R + + +++ +T E+L Y A L S + K R + E+ + ++L
Sbjct: 68 RDPSFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQL 123
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
D VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++
Sbjct: 124 LEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 1070 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ GR V+ + H + EA + +++ G V+ G
Sbjct: 179 LKNEGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKKQETFA 957
L ++ + G L+G SGAGK+TL+ ++ + T G I +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 958 RVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
R G Q P +YE++ ++ L ++ + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTG----VPPREIRKRVPAALELVGLSHKH 130
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1077 VVCTIHQPSI 1086
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KKQETFARV 959
VS R G + L+G +GAGKTT + +L + T G ++G+ ++ R
Sbjct: 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRRR 74
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
G Q +T +E+L A L V +R+ +DE+++ V L D LV
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLVK- 130
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVV 1078
S R+RL IA LV P ++F+DEPT GLD + A V + + G T++
Sbjct: 131 ----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186
Query: 1079 CTIHQPSIDIFEA---FDELLLMKRGGRVIYAG 1108
T H + EA D + ++ GR+I G
Sbjct: 187 LTTH----YMEEAEQLCDRVAIIDH-GRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 64/232 (27%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
KK + D+S V + LLG GAGKTT + L G +R
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG----------------ELRP 54
Query: 240 WKTEQASGKITYCGHELN---EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 296
SG G+ + + Q Y Q D E+TVRE L F R G+
Sbjct: 55 -----TSGTAYINGYSIRTDRKAARQSLG-YCPQFDALFDELTVREHLRFYARLKGL--- 105
Query: 297 YELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356
P EI + +L++LGL A+
Sbjct: 106 -----------------PKSEIKE--------------EVELLLRVLGLTDKANKRART- 133
Query: 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408
+SGG K++++ L+G VLL+DE ++GLD ++ I + ++
Sbjct: 134 ----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK 181
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 6e-17
Identities = 70/298 (23%), Positives = 110/298 (36%), Gaps = 94/298 (31%)
Query: 171 LGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQ 230
L + L S VQ ++DVS + +T LLG GAGKTTL+ +A L +
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD------ 55
Query: 231 SNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQH-DLHHGE------MTVRET 283
SGK+T G + R +++ + + GE +T RE
Sbjct: 56 ---------------SGKVTIDGVDT-----VRDPSFVRRKIGVLFGERGLYARLTAREN 95
Query: 284 LDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343
L + R G+ R E+ A ++ + K L
Sbjct: 96 LKYFARLNGLS-RKEIKARIAE---------------------------------LSKRL 121
Query: 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFL 403
L D VG S G K++V LV +L++DE ++GLD T + F+
Sbjct: 122 QLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 404 KQM----------VHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
KQ+ HIM E L D +I++ +G++V G + +
Sbjct: 177 KQLKNEGRAVIFSSHIM------------QEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 79.3 bits (197), Expect = 6e-17
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 58/208 (27%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ--- 953
+L VS +PG A++G SG+GK+TL+ +L T G+I I G +
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEILIDGVDLRDLDL 71
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
E+ + Y Q + L+S T +R
Sbjct: 72 ESLRKNIAYVPQ-----------DPFLFS---------GT------------------IR 93
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
+ N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R +
Sbjct: 94 E--------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAK 144
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
G+TV+ H+ S D ++++ G
Sbjct: 145 GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 9e-17
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKKQET 955
Q L V+ G + A++G SGAGK+TL+ L G T G I + I+ K+
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 956 FARVS-GYCEQTDIHSPHVTLYESLL-----YSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
R G Q P +++ E++L Y++ R + +K+ K + +E V +
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI 137
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR- 1068
L A + LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 138 --LDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192
Query: 1069 -NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
N D G TV+ +HQ +D+ + + + ++ + GR+++ GP
Sbjct: 193 INQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 26/222 (11%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKKQ 953
+L V R G + A++G SG+GK+TL+ ++ G R G I+G DI +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI-SGLSEAEL 72
Query: 954 ETFARVSGYCEQ-----TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
R G Q + T++E++ + LR + + ++ + V E +E V
Sbjct: 73 YRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLREHTRLSEEEIREIVLEKLEAVG 125
Query: 1009 LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
L+ D LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R
Sbjct: 126 LRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 1069 NTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ G T + H F D + ++ G+++ G
Sbjct: 181 SLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 11/217 (5%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ 953
L +S + G L AL+G SGAGK+TL+ ++AG G I + ++
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
R G+ Q PH+T+ +++ + +R + + V+E++ LV+L+ L
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER-PSEAEIRARVEELLRLVQLEGLA 131
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1072
D P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 132 DR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
G T V H + E D ++++ + GR+ GP
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKK 952
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G ++
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLY------SAWLRLSSDVDTKKRKIFVDEVMEL 1006
AR EQ + +T+ + + S W S D VD +
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-AGDSPHDAA----VVDRALAR 124
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
EL L D ++ LS +R+R+ +A L P ++ +DEPT+ LD RA +
Sbjct: 125 TELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
VR TG TVV +H +++ ++ + +++ GGRV+ AGP
Sbjct: 180 VRELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-16
Identities = 68/290 (23%), Positives = 121/290 (41%), Gaps = 60/290 (20%)
Query: 844 MTVRSSTEIVGE------EENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDR 897
+ + E +G+ E+ + + LP + F +++ G D
Sbjct: 437 QQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRY-----------GPDD 485
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKKQ-- 953
+L +S PG A++G SG+GK+TL+ +L G Y +G I + G
Sbjct: 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDID 541
Query: 954 -ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR----LSSDVDTKKRKIFVDEVMELVE 1008
+ R GY Q + L+S +R L + T +E++E +
Sbjct: 542 LASLRRQVGYVLQ-----------DPFLFSGSIRENIALGNPEATD------EEIIEAAQ 584
Query: 1009 LKPLRDALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
L + + LP G LS QR+RL +A L++ P I+ +DE TS LD
Sbjct: 585 LAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644
Query: 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
AI+++ + + GRTV+ H+ S + D ++++ G+++ G
Sbjct: 645 EAIILQNLL-QILQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 4e-16
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKI 946
KT G G + L +S + G AL+G SG GK+TL+ ++AG R T G++ +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLV 63
Query: 947 SGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
G P R GY Q D P +T+ +++ L+ V + + +E++EL
Sbjct: 64 DGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLEL 118
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
V L +A P LS R+R+ +A L +P ++ +DEP S LDA +
Sbjct: 119 VGLSGFENAY---PH--QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE 173
Query: 1067 VRNTV-DTGRTVVCTIHQPSIDIFEAF---DELLLM-KRGGRVI 1105
+ + +TG+TV+ H DI EA D ++++ R GR++
Sbjct: 174 LLDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 4e-16
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 25/240 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKKQET 955
+ VS R G L+G SG+GK+TL +LAG + G I D+ ++G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
+ + +P +T+ + L LR+ +R+ V E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1074
L P + LS QR+R+ IA L P ++ +DEP S LD A V+ +++ + G
Sbjct: 423 LDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480
Query: 1075 RTVVCTIHQPSIDIFEAF-DELLLMKRG-------GRVIYAGPLGRESHKLIEYFEAVPG 1126
T + H + + D + +M G ++ P + KL+ AVP
Sbjct: 481 LTYLFISH--DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL---AAVPK 535
|
Length = 539 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-16
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--- 951
R L VS PG AL+G SGAGK+TL+++L G EG I ++G P
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADA 389
Query: 952 KQETFARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
+++ + Q P + T+ E++ + R + + + + E V
Sbjct: 390 DADSWRDQIAWVPQH----PFLFAGTIAENIRLA---RPDASDAEIREALERAGLDEFVA 442
Query: 1009 LKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
P D +G G GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +
Sbjct: 443 ALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEAL 501
Query: 1068 RNTVDTGRTVVCTIHQPSI 1086
R + GRTV+ H+ ++
Sbjct: 502 RA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGG--YIEGDIKISGY 949
L +S G +TAL+G SG GK+TL+ D++ G G ++G I
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK-DIYDL 72
Query: 950 PKKQETFARVSGYCEQTDIHSP---HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
R G Q P ++Y+++ Y L ++ V+E +
Sbjct: 73 DVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKL--KEELDERVEEALRK 126
Query: 1007 VELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
L ++D L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 127 AALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 34/218 (15%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKKQ---ET 955
L +VS R G A++G G+GK+TL+ +LAG Y G + + G +Q
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSGSVLLDGTDIRQLDPAD 75
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R GY Q D+ + TL +++ A L+ D ++ EL + D
Sbjct: 76 LRRNIGYVPQ-DVTLFYGTLRDNITLGA--PLADDE----------RILRAAELAGVTDF 122
Query: 1016 LVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+ P GLS QR+ + +A L+ +P I+ +DEPTS +D + +
Sbjct: 123 VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
+R + +T++ H+PS+ + D +++M G V
Sbjct: 183 LRQLL-GDKTLIIITHRPSLL--DLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 72/274 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
IL D+S + +T +LGP G+GK+TL+ LAG L +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---------------------KPK 55
Query: 246 SGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG++ G ++ P+ + AY+ Q +TV E L
Sbjct: 56 SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-----------------LVL 98
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
L R + +E + + L+LLGL+ AD V + +S
Sbjct: 99 LGRY-------------PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LS 140
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GG+++RV L +LL+DE ++ LD + ++ + L+ + +T+++ L
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL---- 196
Query: 423 PETYDLF------DDIILISEGQIVYHGPRDNVL 450
+DL D +IL+ +G+IV G + VL
Sbjct: 197 ---HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-15
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFA 957
L VS PG A++G SG+GK+TL+ LAG G + +S Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
R C Q D H T+ E+L + D +E+ +E L D L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATD-------EELWAALERVGLADWLR 455
Query: 1018 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
LP GL T +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 1067 VRNTVDTGRTVVCTIHQP 1084
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 3e-15
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 21/193 (10%)
Query: 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 949
G + Q+L VS G + AL+G +GAGKTTL+ + G G I I+G
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67
Query: 950 PKKQETFARVS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
P R GY + P +T+ E+LL A+ R + + ++ V EL
Sbjct: 68 P----PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYEL 118
Query: 1007 V-ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
LK R L G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 119 FPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 1066 TVRNTVDTGRTVV 1078
+R D G T++
Sbjct: 174 AIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 892 GVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI----- 946
G G R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 947 SGYPKKQETFARVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDT----KKRKIFVD 1001
G +K+ R + GY Q L L ++++ ++ ++ +
Sbjct: 70 YGASEKELVQLRRNIGYIFQ------AHNLLGFLTARQNVQMALELQPNLSYQEARERAR 123
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
++E V L D L P + LS Q++R+ IA LV P ++ DEPT+ LD+++
Sbjct: 124 AMLEAVGLG---DHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178
Query: 1062 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
V+ ++ + G T++ H I + D ++ M+ G
Sbjct: 179 DVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 35/222 (15%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKKQETFAR 958
L ++ + +PG A++G +GAGKTTL+++L Y +G I I G + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 959 VS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
+ G Q D T+ E++ R ++ + EV+E + D
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG---RPNATDE---------EVIEAAKEAGAHDF 121
Query: 1016 LVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ + GRT + H+ S I A D++L++ G++I G
Sbjct: 182 LEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDD-GKIIEEG 219
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 9e-15
Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 77/275 (28%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L +VS ++P ++G G+GK+TL+ L G +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY---------------------QPTE 519
Query: 247 GKITYCGHELNEFVP---QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G + G ++ + P +R Y+ Q L +G T+R+ + LG
Sbjct: 520 GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG--TLRDNI-----ALGA--------- 563
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEMRRGI 361
P + + ++A +AG VT++V + GLD +G E R +
Sbjct: 564 -----------PYADDEEILRAAELAG-----VTEFVRRHPDGLD----MQIG-ERGRSL 602
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV----- 416
SGGQ++ V L+ +LL+DE ++ +D+ + + LK+ + T+++
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT 660
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+LL DL D II++ G+IV GP+D VLE
Sbjct: 661 SLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 62/285 (21%), Positives = 104/285 (36%), Gaps = 72/285 (25%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-HENLRVRF-QSN 232
+L LKDVS ++ LL+GP G+GK+TL+ L G L + V +
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67
Query: 233 KFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 292
+ + Q G V Q + TV + + F LG
Sbjct: 68 TSSEKSLLELRQKVG-----------LVFQNPDDQLF-------GPTVEDEVAFGLENLG 109
Query: 293 VGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352
+ P EI+ L+L+GL+ D
Sbjct: 110 L--------------------PREEIEE--------------RVAEALELVGLEELLDRP 135
Query: 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412
+ SGGQK+RV +L ++LL+DE + GLD ++ + LK++
Sbjct: 136 PFNL-----SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK 190
Query: 413 TMIVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVLE 451
T+I+ T+DL D ++++ +G+I+ G +
Sbjct: 191 TIIIV-------THDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 71/287 (24%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKF 234
+L + + LKDVS + P L+GP GAGK+TL+ L G
Sbjct: 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--------------- 49
Query: 235 LIIRIWKTEQASGKITYCGHELNEFVPQ------RTCAYISQHDLHH--GEMTVRETLDF 286
L+ E SG + G ++N+ + R I Q + ++V E +
Sbjct: 50 LV------EPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENV-L 100
Query: 287 SGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD 346
SGR T L + EKQ+ + L+ +GL
Sbjct: 101 SGRLGRRSTWRSLFGLFPKEEKQRAL-------------------------AALERVGLL 135
Query: 347 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
A D++ SGGQ++RV L+ K++L DE LD +++ Q+ LK++
Sbjct: 136 DKAYQRA-DQL----SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRI 190
Query: 407 VHIMDVTMIVALLQPAPETYDL----FDDIILISEGQIVYHGPRDNV 449
+T+IV+L Q DL D I+ + +G+IV+ GP +
Sbjct: 191 NREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 22/215 (10%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKK 952
R+ L +S + G + L+G +GAGKTT + ++ G I G++ G P
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLD 65
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
R+ GY + P + + + L+Y A L+ + ++R +DE +E +EL
Sbjct: 66 IAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEY 121
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
+ V LS ++++ ++ +P ++ +DEP SGLD ++ +R
Sbjct: 122 ANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 1073 TGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIY 1106
G+TV+ + HQ +++ E D +LL+ +G V+Y
Sbjct: 177 AGKTVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 910 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQ-ETFARVSGYC 963
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
Q PH+++ +L Y +R+I + V+EL+ + L L LPG
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHL---LGRLPG-- 130
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIH 1082
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++ H
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 1083 QPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
++ D +++++ GRV AGP+
Sbjct: 191 SLQ-EVLRLADRVVVLED-GRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQET 955
+++ VS G + L+G +GAGKTT ++ G R G I D IS P
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL-HAR 75
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R GY Q +++Y++L+ A L++ D+ ++R+ +E+ME ++ LRD+
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
+ LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G
Sbjct: 134 MG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 1076 TVVCTIH 1082
V+ T H
Sbjct: 189 GVLITDH 195
|
Length = 241 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 43/241 (17%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKKQETFARVSGYCE 964
G + A++G SG+GK+TL+ ++ G R G I DI + E R+ G
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLF 91
Query: 965 QTDIHSPHVTLYESLLYSAW------LRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
Q L+ SL + + LR + + + ELV +K LVG
Sbjct: 92 Q------QGALFSSL--TVFENVAFPLREHTKLPES-------LIRELVLMKL---ELVG 133
Query: 1019 LPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
L G LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R D
Sbjct: 134 LRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELND 193
Query: 1073 T-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG--RES-HKLI-EYFEAVPGV 1127
G TV+ H + D + ++ G+VI G S + ++F +
Sbjct: 194 ALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTPEELLASDDPWVRQFFNGIRDG 251
Query: 1128 P 1128
P
Sbjct: 252 P 252
|
Length = 263 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 56/200 (28%), Positives = 84/200 (42%), Gaps = 21/200 (10%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 951
G L +S G L G +G+GKTTL+ ++AG G I+ D P
Sbjct: 13 GGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD 70
Query: 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
A Y + P +T+ E+L + W + + +E V L P
Sbjct: 71 ----VAEACHYLGHRNAMKPALTVAENLEF--WAAFLGGEEL-----DIAAALEAVGLAP 119
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R +
Sbjct: 120 LAH----LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 1072 DTGRTVVCTIHQPSIDIFEA 1091
G V+ H P + + A
Sbjct: 175 AQGGIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 64/272 (23%), Positives = 102/272 (37%), Gaps = 86/272 (31%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+ L VS + M LLGP GAGKTTLM LA T
Sbjct: 14 RALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILAT---------------------LTPP 51
Query: 245 ASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+SG I G ++ + +R Y+ Q + TVRE LD+ G+
Sbjct: 52 SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP-------- 103
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
S+ K + D VL+L+ L A +G +S
Sbjct: 104 -SKEVKAR-------------------------VDEVLELVNLGDRAKKKIG-----SLS 132
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM---------VHIM-DV 412
GG ++RV + LVG +L++DE + GLD + L ++ HI+ DV
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV 192
Query: 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHG 444
+ + + ++++G++V+ G
Sbjct: 193 ESLC-------------NQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 66/266 (24%), Positives = 105/266 (39%), Gaps = 66/266 (24%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
V+ L D+S V+P LLGP G GKTTL+ +AG L
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG---------------LE----- 50
Query: 242 TEQASGKITYCGHELNEFVP-QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYE 298
SG+I G ++ P +R + Q H +TV E + F + GV
Sbjct: 51 -RPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPH--LTVAENIAFGLKLRGVPK--- 104
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
AE+ R ++ +L+L+GL+ +
Sbjct: 105 --AEIRARVRE-----------------------------LLELVGLEGLLNRYP----- 128
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+SGGQ++RV L +LL+DE + LD+ ++ + LK++ + +T I
Sbjct: 129 HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVT 188
Query: 419 LQPAPETYDLFDDIILISEGQIVYHG 444
E L D I +++EG+IV G
Sbjct: 189 HDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 19/194 (9%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQE 954
L ++ VS RPG + L+G +GAGKTTL +++ G + + G + I+G P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP-HR 75
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLL--YSAWLRLSSDVDTKKRKIFVDEVME------- 1005
Q P +T+ E++ A L LS + + + E E
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 1006 LVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
V L L D G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 136 FVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 1066 TVRNTVDT-GRTVV 1078
+R D G T++
Sbjct: 191 LIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 949
G ++Q L VS G + AL+G +GAGKTTL+ + G R G I I+G
Sbjct: 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70
Query: 950 PKKQETFARVS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
P R Y + P +T+ E+LL A+ R D + ++ ++EV EL
Sbjct: 71 P----PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYEL 122
Query: 1007 V-ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
LK R+ G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 123 FPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177
Query: 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
++ G + + Q + A D +++ GR++ +G
Sbjct: 178 AIKELRKEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 32/222 (14%)
Query: 884 MPAEM--------KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935
MPAE KT G GE L +L V + G A++G SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 936 TGGYIEGDIKISGYP---KKQETFARVS----GYCEQTDIHSPHVTLYESLLYSAWLRLS 988
G++++ G P ++ A + G+ Q+ P++T E++ LR
Sbjct: 61 DPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 989 SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048
S D++ L+E L L P LS +++R+ +A P ++F
Sbjct: 119 SSADSRAGAK------ALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFA 170
Query: 1049 DEPTSGLD----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
DEPT LD + A ++ R + G T+V H P +
Sbjct: 171 DEPTGNLDRATGDKIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----YPKKQET 955
LH VS R G L G SGAGKTTL+ +L G T G ++I+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 956 FARVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKI--FVDEVMELVELKPL 1012
R G Q P T+YE++ L + K+R+I V + V L+
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGK---KEREIQRRVGAALRQVGLEHK 130
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
DA P LS +++R+ IA +V +P ++ DEPT LD + ++ ++
Sbjct: 131 ADAF---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 1073 TGRTVVCTIHQPSI 1086
G TV+ H S+
Sbjct: 186 RGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQ 965
+ G L+G +GAGKTT + +L G G I + G P + + RV G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV-GVVPQ 87
Query: 966 TDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024
D P T+ E+LL + + LS+ + V ++E +L+ DA VG
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSA----AAARALVPPLLEFAKLENKADAKVG-----E 138
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 31/237 (13%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L ++ + G A++G SG GK+TL+ ++AG + T G + D + P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD----- 73
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
GY Q D P +T+ +++ LR + + E++ELV L D
Sbjct: 74 -IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKY-- 127
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1077
P LS R+R+ IA L P ++ +DEP LDA + + +T +TV
Sbjct: 128 -PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 1078 VCTIHQPSIDIFEAF---DELLLMKRGGRVIY-------AGPLGRESHKLIEYFEAV 1124
+ H D+ EA D ++++ I P R + +E E +
Sbjct: 185 LLVTH----DVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLELREEL 237
|
Length = 248 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETF 956
LLH +S F G +T L+G +G+GK+TL+ +L GR EG+I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 957 ARVSGYCEQTDIHSPHVTLYESLL------YSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
AR Y Q + +T+ E + + A R + D +K V+E + LV LK
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-DREK----VEEAISLVGLK 138
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1069
PL L V+ LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1070 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ + G TV+ +H I++ + + L+ RGG +I G
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 19/213 (8%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKK 952
L VS G L AL+G SG+GKTTL+ ++AG R G I G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS---DVDTKKRKIFVDEVMELVEL 1009
+ R G+ Q H+T+++++ + ++ S + K V E+++LV+L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK--VHELLKLVQL 126
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
L D P LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 127 DWLADR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181
Query: 1070 TVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
D T V H + E D +++M +G
Sbjct: 182 LHDELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 8e-14
Identities = 68/267 (25%), Positives = 107/267 (40%), Gaps = 75/267 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+L+DVS VKP ++GP GAGK+TL+ A+ G L
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---------------------PT 52
Query: 246 SGKITYCGHELNE------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
SG I G L + +VPQR D ++VR+ + +G+ L
Sbjct: 53 SGSIRVFGKPLEKERKRIGYVPQR---RSIDRDF---PISVRDVV-----LMGLYGHKGL 101
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
LS+ +K K D L+ +GL AD +G+
Sbjct: 102 FRRLSKADKA-------------KV------------DEALERVGLSELADRQIGE---- 132
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL- 418
+SGGQ++RV LV +LL+DE G+D T I + L+++ +T++V
Sbjct: 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTH 190
Query: 419 -LQPAPETYDLFDDIILISEGQIVYHG 444
L + FD ++L+ +V G
Sbjct: 191 DLGLVL---EYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 63/276 (22%), Positives = 109/276 (39%), Gaps = 69/276 (25%)
Query: 172 GLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQS 231
L VQ LK VS ++ ++GP G+GK+TL L + G L R
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTL-LNILGGL---DRP---- 56
Query: 232 NKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 291
SG++ G ++++ ++ +E F R +
Sbjct: 57 -------------TSGEVRVDGTDISK-------------------LSEKELAAFRRRHI 84
Query: 292 G-VGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350
G V + LL +L+ E ++ + V +E + +L+ +GL +
Sbjct: 85 GFVFQSFNLLPDLTALEN---------VELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 351 TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTG-LDSSTTFQICKFLKQMVHI 409
E+ SGGQ++RV L K++L DE TG LDS T ++ + L+++
Sbjct: 136 HYPS-EL----SGGQQQRVAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKE 189
Query: 410 MDVTMIVALLQPAPETYD-----LFDDIILISEGQI 440
T++V T+D D II + +G+I
Sbjct: 190 AGTTIVVV-------THDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 25/240 (10%)
Query: 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGY 949
V + +L VS G +T ++G +G GKTTL+ L G K+G I+
Sbjct: 8 VYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67
Query: 950 PKKQETFARVS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
P R Y Q P +T+ E+LL + RKI DE+ EL
Sbjct: 68 P----PHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL-----PRRSRKI-PDEIYEL 117
Query: 1007 VE-LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
LK + G LS Q+++L IA LV P ++ +DEPT G+ + R
Sbjct: 118 FPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172
Query: 1066 TVRNTVDTGRTVVCTIHQPSIDI-FEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAV 1124
+R G + + Q +D E D +M+R GRV+ +G + + AV
Sbjct: 173 VIRRLRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 14/214 (6%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETF 956
Q L V+ G L AL+G SG+GK+TL+ ++AG + G I+++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 957 A-RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R G+ Q H+T+ +++ + +R K R V+E++ELV+L+ L D
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR 126
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
P N LS QR+R+ +A L P ++ +DEP LDA+ + +R D
Sbjct: 127 ---YP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1076 -TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
T V H + E D +++M G++ G
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 27/224 (12%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQET 955
+LL VS RPG + A++G +GAGK+TL+ L+G + G++ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 956 FARVSGYCEQ-TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-- 1012
AR Q + + P + R + + +R + + +L L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAATDLSGLAG 130
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRT 1066
RD LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 131 RD-------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYAGP 1109
R G V+ +H +++ + D ++L+ + GRVI +G
Sbjct: 184 ARQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 53/219 (24%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISG---- 948
E + ++L V+ + G + A+MG +G+GK+TL + G Y EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 949 -----------------YPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDV 991
YP + G VT + L + R +
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNARRGARG 114
Query: 992 DTKKRKIFVDEVMELVELKPL---RDALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIF 1047
+ + E EL+ L R VN G S ++KR I L+ P +
Sbjct: 115 ILPEFIKELKEKAELLGLDEEFLER-------YVNEGFSGGEKKRNEILQLLLLEPKLAI 167
Query: 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-13
Identities = 58/269 (21%), Positives = 98/269 (36%), Gaps = 104/269 (38%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
+L D+S ++ + +LGP GAGK+TL+ LAG L
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-------------------- 49
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
+ +SG+I G +L A
Sbjct: 50 -KPSSGEILLDGKDL--------------------------------------------A 64
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
LS +E + +A Q L+LLGL AD + +
Sbjct: 65 SLSPKE-------------LARKIAYVPQ--------ALELLGLAHLADRPFNE-----L 98
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGG+++RV L +LL+DE ++ LD + ++ + L+++ T+++ L
Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL--- 155
Query: 422 APETYDL------FDDIILISEGQIVYHG 444
+DL D +IL+ +G+IV G
Sbjct: 156 ----HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 68/292 (23%), Positives = 110/292 (37%), Gaps = 70/292 (23%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
Q L DV+ V + LLGP G+GK+TL+ +AG
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-------------------- 51
Query: 243 EQASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
SG+I G + + R ++ QH +TVR+ + F G+ R
Sbjct: 52 -PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAF-----GLEIR----- 100
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
K + + +L+L+ L +GD +
Sbjct: 101 -----------KHPKA-------------KIKARVEELLELVQL-----EGLGDRYPNQL 131
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++RV L +VLL+DE LD+ ++ +L+++ + VT V +
Sbjct: 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT-VFVTHD 190
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEV 473
E ++ D I+++S G+I G D V + P V FL EV
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGSPDEV--------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVS-GYCEQTD 967
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 968 IHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026
T+ E+LL + + +S T++ + + ++E L+ DA V LS
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADARVSD-----LS 174
Query: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH---- 230
Query: 1087 DIFEAFDEL---LLMKRGGRVIYAGPLGRESHKLIE 1119
E + L L + GR I G H LI+
Sbjct: 231 -FMEEAERLCDRLCVLEAGRKIAEG----RPHALID 261
|
Length = 340 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 57/207 (27%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ---E 954
+L +VS + PG A++G SG+GK+TL ++ G R T G +++ G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
GY Q D ++F + E
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAE--------- 94
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1074
N LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 95 --------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1075 RTVVCTIHQPSIDIFEAFDELLLMKRG 1101
T + H+P + D +L+++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-13
Identities = 70/325 (21%), Positives = 127/325 (39%), Gaps = 50/325 (15%)
Query: 790 WIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSS 849
+ +GAL F L T + +G+ S + A+ + +
Sbjct: 265 SLTVGALAAFILYLLRLL----TPILQLGEVVSLLQRA-----SAAAERL----FELLDE 311
Query: 850 TEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFR 909
V + + S+ F +++ + +L +S +
Sbjct: 312 EPEVEDPPDPL------KDTIGSIEFENVSFSYP------------GKKPVLKDISFSIE 353
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQETFA---RVSGYC 963
PG A++G SG+GK+TL+ +L + G+I I G + + + G
Sbjct: 354 PGEKVAIVGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
Q D T+ E++ +++ + E + L D +VG GVN
Sbjct: 409 SQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGVN 465
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
LS QR+RL IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+
Sbjct: 466 -LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHR 523
Query: 1084 PSIDIFEAFDELLLMKRGGRVIYAG 1108
S + D ++++ GR++ G
Sbjct: 524 LS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 25/226 (11%)
Query: 892 GVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKIS 947
G G R+ L+ +S + G +TAL+G +G GK+TL+ A R ++G GD IS
Sbjct: 11 GYGTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPIS 67
Query: 948 GYPKKQETFARVSGYCEQTDIHSPHVTLYESLLY--SAWLRLSSDVDTKKRKIFVDEVME 1005
+Q AR Q + +T+ E + Y S WL L + + V++ ME
Sbjct: 68 MLSSRQ--LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR-VNQAME 124
Query: 1006 LVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
+ L D + LS QR+R +A+ L + ++ +DEPT+ LD +MR
Sbjct: 125 QTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179
Query: 1066 TVRNTVDTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYAG 1108
+R G+TVV +H D+ +A D L+++ G V+ G
Sbjct: 180 LMRELNTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 3e-13
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 63/207 (30%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L VS + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDG---------- 61
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
++ SP D ++ I +
Sbjct: 62 -----KEVSFASPR-------------------DARRAGIAM------------------ 79
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
V LS +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 80 ---VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1079 CTIHQPSIDIFEAFDELLLMKRGGRVI 1105
H+ ++FE D + ++ R GRV+
Sbjct: 137 FISHRLD-EVFEIADRVTVL-RDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 4e-13
Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 944
+ G ++ L VS + + G L+G SG+GK+TL + G + T G +G
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD 68
Query: 945 KISGYPKKQETFARVSGYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
+ + ++ + Q + S P +T+ E + + +++
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA---V 125
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
++ LV + + L P + LS QR+R+ IA L NP ++ DEPTS LD A
Sbjct: 126 LLLLVGVGLPEEVLNRYP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQ 183
Query: 1063 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
++ ++ + G T++ H + A D + +M G+++ G
Sbjct: 184 ILDLLKKLQEELGLTLLFITHDLGVVAKIA-DRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISG---YPKKQETFARVSGYCEQ 965
G + +G +GAGKTT + +L+G + T G+++++G + ++++ R+ Q
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102
Query: 966 TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025
+ + +S A + KKR +DE+ EL++L+ L D V L
Sbjct: 103 KTQLWWDLPVIDSFYLLAAIYDLPPARFKKR---LDELSELLDLEELLDT-----PVRQL 154
Query: 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP 1084
S QR R IA L+ P I+F+DEPT GLD A + ++ + G TV+ T H
Sbjct: 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214
Query: 1085 SIDIFEAFDELLLMKRGGRVIYAG 1108
DI EA +L+ GR++Y G
Sbjct: 215 K-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 884 MPAE--------MKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935
MPAE K+ G GE L +L V + G AL+G SG+GK+TL+ +LAG
Sbjct: 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60
Query: 936 TGGYIEGDIKISGYP-------KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS 988
G G++ + G P + + A+ G+ Q+ + P + E++ A LR
Sbjct: 61 DGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE 118
Query: 989 SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048
S ++ L+E L L LP LS +++R+ +A P ++F
Sbjct: 119 SSRQSRNGAK------ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFA 170
Query: 1049 DEPTSGLD 1056
DEPT LD
Sbjct: 171 DEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 22/200 (11%)
Query: 915 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKKQETFARVSGYCEQTDIHSP 971
++G +G+GK+ L++ +AG + G I + K I+ P ++ Y Q P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM---ELVELKPLRDALVGLPGVNGLSTE 1028
H+T+Y+++ Y R + +++ + + E++ L+ KP LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1088
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1089 FEAFDELLLMKRGGRVIYAG 1108
+ D++ +M G++I G
Sbjct: 194 WALADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFA 957
L +S G + G +GAGKTTL+ +LAG R G + + +E++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVRESYH 74
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
+ Y +T E+L + W R + + E + V L L D
Sbjct: 75 QALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLED--- 125
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
LP V LS Q++R+ +A ++ + +DEP + LD A++ + G V
Sbjct: 126 -LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 1078 VCTIHQP 1084
+ T HQP
Sbjct: 184 LLTTHQP 190
|
Length = 209 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 5e-13
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 26/210 (12%)
Query: 916 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-KQETFARVS-GYCEQTDIHSPHV 973
L+G +GAGK+T+ +L G + G I + G P + ARV+ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 974 TLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKR 1032
T+ E+LL + + +S T++ + + ++E L+ D V L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 1033 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1092
LT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H E
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH-----FMEEA 198
Query: 1093 DEL---LLMKRGGRVIYAGPLGRESHKLIE 1119
+ L L + GR I G H LI+
Sbjct: 199 ERLCDRLCVLESGRKIAEG----RPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 37/230 (16%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP- 950
D +L ++S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDL 66
Query: 951 --KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR---LSSDVDTKKRKIFVDEVME 1005
R G V L E++L++ +R +D ++ E +
Sbjct: 67 ALADPAWLRRQVG-----------VVLQENVLFNRSIRDNIALADPGMSMERVI--EAAK 113
Query: 1006 LV-------ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
L EL D +VG G GLS QR+R+ IA L+ NP I+ DE TS LD
Sbjct: 114 LAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
Query: 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ +MR + + GRTV+ H+ S + A D +++M+ GR++ G
Sbjct: 173 SEHAIMRNMHDICA-GRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 6e-13
Identities = 66/278 (23%), Positives = 110/278 (39%), Gaps = 76/278 (27%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L DVS V+P + L+GP GAGKTTL ++G L S
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---------------------RPTS 54
Query: 247 GKITYCGHELNEFVPQRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G + + G ++ P I Q E+TV E + + + T LL
Sbjct: 55 GSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQA---RTGSGLLLA 111
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+RRE+++ A A + +L+ +GL AD G+ +S
Sbjct: 112 RARREERE-------------ARERAEE--------LLERVGLADLADRPAGE-----LS 145
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV----------HIMDV 412
GQ++R+ L K+LL+DE + GL+ T ++ + ++++ H MDV
Sbjct: 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205
Query: 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
M L D + ++ +G+++ G D V
Sbjct: 206 VM------------SLADRVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 67/225 (29%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQET---FARVSG 961
G L+G SG+GKTT M + IE G+I I G +++ R G
Sbjct: 24 IAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78
Query: 962 YCEQTDIHSPHVTLYE------SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP--LR 1013
Y Q PH+T+ E LL W + +K + DE++ LV L P
Sbjct: 79 YVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLDPAEFA 129
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------V 1067
D P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 130 DRY---PH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEFK 179
Query: 1068 RNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
R + G+T+V H DI EAF D + +MK G V P
Sbjct: 180 RLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTP 220
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 34/223 (15%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG-YIEGDIKISGYPKKQETF 956
L VS G +T+++G +GAGK+TL M L + +G I+G ++++ P K
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPSK--EL 73
Query: 957 ARVSGYCEQTDIHSPHVTLYESLL------YSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
A+ +Q + + +T+ L+ YS RL TK+ + ++E +E + L+
Sbjct: 74 AKKLSILKQENHINSRLTV-RDLVGFGRFPYSQG-RL-----TKEDRRIINEAIEYLHLE 126
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
L D + + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 127 DLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181
Query: 1071 VDT-GRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYAGP 1109
D G+T+V +H DI A D ++ +K G+V+ G
Sbjct: 182 ADELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 8e-13
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 25/169 (14%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQETF 956
L+ +S + PG L L+G +GAGKTTLMDV+ G R G +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 957 ARVSGYCE--QTDIHSPHVTLYESLLYS--------AWLRLSSDVDTKKRKIFVDEVMEL 1006
AR G Q ++T+ E+L + A L + ++R +DE++
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR---IDELLAT 134
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
+ L RD L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 135 IGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 9e-13
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 29/212 (13%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQE---TFARVSGYC 963
G L+G SG+GKTT + + IE G+I I G R GY
Sbjct: 26 EGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
Q PH+T+ E++ L D ++ K DE+++LV L P + P +
Sbjct: 81 IQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDP-SEYADRYP--H 134
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVDTGRTVVCT 1080
LS Q++R+ +A L A+P I+ MDEP LD R ++ ++ G+T+V
Sbjct: 135 ELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFV 192
Query: 1081 IHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
H DI EA D + +M G V Y P
Sbjct: 193 TH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 68/292 (23%), Positives = 112/292 (38%), Gaps = 74/292 (25%)
Query: 173 LLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSN 232
L H K+R ++ ++D+S + + LG GAGK+T + L G L
Sbjct: 26 LNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-------- 77
Query: 233 KFLIIRIWKTEQASGKITYCGHELNEFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCL 291
SGK+ +N P R Y+ L M + L + L
Sbjct: 78 -------------SGKV-----RVNGKDPFRRREEYLRSIGL---VMGQKLQLWW---DL 113
Query: 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
E+L + PD D F + + D++ ++L L+
Sbjct: 114 PALDSLEVLKLIYE-------IPD---DEFAERL-----------DFLTEILDLE----G 148
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411
+ +R+ +S GQ+ R L+ KVL +DE + GLD + I +FLK+
Sbjct: 149 FLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 412 VTMIVALLQPAPETYDLFDDI-------ILISEGQIVYHGPRDNVLEFFEQM 456
T+++ T+ FDDI +LI +GQ+V+ G + E F
Sbjct: 208 ATVLLT-------THI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 28/211 (13%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KKQETFARVSGYC-- 963
G + +G +GAGK+T + +L G T G + +++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLVMG 104
Query: 964 --EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLP 1020
Q P +SL L+L ++ + +D + E+++L+ L+
Sbjct: 105 QKLQLWWDLP---ALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP----- 153
Query: 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVC 1079
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+
Sbjct: 154 -VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
T H DI D +LL+ + G++++ G L
Sbjct: 213 TTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 71/277 (25%), Positives = 106/277 (38%), Gaps = 84/277 (30%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
K+ VQ + VS VKP +T LLGP GAGKTT + LAG L
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL------------------ 55
Query: 240 WKTEQASGKITYCGHEL--NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
E +G T G ++ +R ++S + +T RE L++ G+
Sbjct: 56 ---EPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGD 111
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
EL A L + + LG++ D VG
Sbjct: 112 ELTARL---------------------------------EELADRLGMEELLDRRVG--- 135
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM----------V 407
G S G +++V LV VLL+DE +TGLD T + +F++Q+
Sbjct: 136 --GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFST 193
Query: 408 HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHG 444
HIM E L D ++++ G++VY G
Sbjct: 194 HIMQ------------EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-12
Identities = 65/278 (23%), Positives = 109/278 (39%), Gaps = 71/278 (25%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
D +L+D+S + P ++G G+GK+TL+ L G
Sbjct: 483 PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---------------- 526
Query: 241 KTEQASGKITYCGHELNEFVPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTR 296
G+I G +LN+ R Y+ Q L G ++RE +
Sbjct: 527 -----QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG--SIRENIALG--------- 570
Query: 297 YELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGD 355
P+ + ++A +AG +++ L +G D T VG
Sbjct: 571 ----------------NPEATDEEIIEAAQLAG-----AHEFIENLPMGYD----TPVG- 604
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
E +SGGQ++R+ L+ K+LL+DE ++ LD T I + L Q + T+I
Sbjct: 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ--ILQGRTVI 662
Query: 416 VALLQPA--PETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ A T D II++ +G+IV G + +L
Sbjct: 663 II----AHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-12
Identities = 62/282 (21%), Positives = 95/282 (33%), Gaps = 85/282 (30%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
QIL VS V + LLG GAGKTTL+ + G ++
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG----------------LLPPR-- 53
Query: 243 EQASGKITYCGHELNEFVPQRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTR-- 296
SG I + G ++ P Y+ + E+TV E L R
Sbjct: 54 ---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA 110
Query: 297 -----YELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
YEL L R KQ A T
Sbjct: 111 RLERVYELFPRLKERRKQL--------------------------------------AGT 132
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411
+ SGG+++ + L+ K+LL+DE S GL +I + ++++
Sbjct: 133 L---------SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEG 182
Query: 412 VTMIVALL--QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
VT+ LL Q A ++ D ++ G++V G +L
Sbjct: 183 VTI---LLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-12
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L VS RPG + AL+G +GAGK+TLM +L+G G+I I G K F
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDG---KPVAF-- 74
Query: 959 VSGYCEQTD-----IH-----SPHVTLYESL-LYSAWLRLSSDVDTKKRKIFVDEVMELV 1007
S + +H P++++ E++ L R +D K + E++ +
Sbjct: 75 -SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
L D LVG LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 1068 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
R G ++ H+ ++FE D + +++ G V
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-12
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 27/236 (11%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYC-EQTD 967
PG + L+G +GAGKTT ++ G EG+I +G P QE R+ GY E+
Sbjct: 26 PPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERG 82
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
++ P +T+ + L Y A L+ + + + + +E +E+ + + LS
Sbjct: 83 LY-PKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSK 133
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1087
++++ ++ P ++ +DEP SGLD ++ + + G T++ + H+
Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-H 192
Query: 1088 IFEAFDELLLMKRGGRVIYAGPL-------GR-----ESHKLIEYFEAVPGVPKIK 1131
+ E D LL++K+G V+Y G + G+ ES +E +PG+ KI
Sbjct: 193 VEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLVIESDLSLEELANIPGILKIT 247
|
Length = 300 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 3e-12
Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 28/228 (12%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKKQETFA 957
Q LH+V G + AL+G SG+GK+TL+ L+G TG I++ G ++E
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--G 75
Query: 958 RVSGYCEQTDIHSPHV----------TLYESLLYSA------WLRLSSDVDTKKRKIFVD 1001
R++ ++ ++ ++ ++ E++L A W R T+++K
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-RTCFSWFTREQKQRAL 134
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
+ + V + V+ LS Q++R+ IA L+ +I DEP + LD +A
Sbjct: 135 QALTRVGM-----VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189
Query: 1062 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
IVM T+R+ G TVV T+HQ +D + E ++ R G V Y G
Sbjct: 190 IVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQE 954
+L ++ G + A++G SG+GK+TL++++ + G Y+ G KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 955 TFAR-VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
F R GY Q + T+ E+L D+ K +K+ E E +
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENL----------DLGLKYKKLSKKEKREKKK----- 116
Query: 1014 DAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+AL VGL + LS +++R+ +A ++ P +I DEPT LD + V+
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1067 VRNTVDTGRTVVCTIHQPSI 1086
+ D G+T++ H P +
Sbjct: 177 LLELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 3e-12
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-----RKTGGYIEGDIKISGYPKKQE 954
+L +S G L AL+G SG GKTTL+ +AG TG D ++ P +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
A + Q PH+ + +++ + + D +R V + ++LV L D
Sbjct: 80 GLALLF----QNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLG---D 129
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1073
A LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 130 AAAHLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 1074 -GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
T++C H D D+ +MK GR+ G
Sbjct: 188 PELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 67/295 (22%), Positives = 112/295 (37%), Gaps = 82/295 (27%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
++LKDV+ ++ +LLGP G GK+TL+ +AG +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG----------------LEEP--- 55
Query: 243 EQASGKITYCGHELNEFVPQ-RTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGT 295
SG+I G ++ + P+ R A + Q H MTV E + F +
Sbjct: 56 --TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH------MTVYENIAFGLK------ 101
Query: 296 RYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD 355
L + + E + +K V KLLGL+ +
Sbjct: 102 ----LRGVPKAEIDKRVKE------------------------VAKLLGLEHLLNR---- 129
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
+SGGQ++RV LV KV L+DE + LD+ + +K++ + T I
Sbjct: 130 -KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTI 188
Query: 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
E L D I+++++G+I G + ++ P VA F+
Sbjct: 189 YVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ 953
L +S G + G +G GKTTL+ +LAG R G + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ R Y P ++ E+L + W + +++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAIHGGAQRT-----IEDALAAVGLTGFE 121
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1074 GRTVVCTIHQP 1084
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQET 955
++++ VS + + G + L+G +GAGKTT ++ G + G I I+ P +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR- 72
Query: 956 FARVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
AR+ GY Q +T+ E++L A L + K+R+ ++E++E + LR
Sbjct: 73 -ARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGL-SKKEREEKLEELLEEFHITHLRK 128
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1074
+ LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1075 RTVVCTIH 1082
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 4e-12
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 48/234 (20%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQ-- 953
LL VS RPG + A++G +GAGK+TL+ L+ G + G+++++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 954 -ETFARVSGYCEQTDIHSPHVTLYESLLYSA--WLRLSSDVDTKKR-KIFVDEVMELVEL 1009
AR Q H +L + + ++ V + V+L
Sbjct: 71 PAELARRRAVLPQ------HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL 124
Query: 1010 KPLRD----ALVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARA 1059
L L G G EQ +R+ +A L P + +DEPTS LD
Sbjct: 125 AHLAGRDYPQLSG--G------EQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 1060 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
V+R R + G V+ +H D+ A D ++L+ GR++ G
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLH-QGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 42/234 (17%)
Query: 917 MGVSGAGKTTLMDVLAGR--KTGGYIE-GDIKISGYPKKQ--ETFARV-----SGYCEQT 966
+G +GAGK+TL++ +AG T G I + ++ + ARV +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 967 DIHSPHVTLYESLLYSAWLR-----LSSDVDTKKRKIFVDEVMELVE-LKPLRDALVGLP 1020
P +T+ E+L A R LSS ++ ++R F + + L L+ +GL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVC 1079
LS QR+ L++ + + P I+ +DE T+ LD + A VM T + + T +
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM 204
Query: 1080 TIH--QPSIDIFEAFDELLLMKRGGRVI--YAGPLGRESHK---LIEYFEAVPG 1126
H + ++D + L+M G+++ G + S LI+ FE + G
Sbjct: 205 VTHNMEDALD----YGNRLIMLHSGKIVLDVTGE-EKASLTVLDLIQMFEKIRG 253
|
Length = 263 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 8e-12
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 23/200 (11%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS------GY 962
RPG L+GV+GAGKTT +L G T GD ++G + +S GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
C Q D +T E L A LR V ++ + + ++ + L D L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1083 QPSIDIFEAF-DELLLMKRG 1101
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-12
Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 41/257 (15%)
Query: 857 ENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTAL 916
E LP ++TF + + D ++L +++ +PG +
Sbjct: 440 EPRSAGLAALPELRGAITFENIRFRYA-----------PDSPEVLSNLNLDIKPGEFIGI 488
Query: 917 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHV 973
+G SG+GK+TL +L T + G + + G R G V
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMG-----------V 535
Query: 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLP-GVN--------G 1024
L E++L+S +R ++ + V+ +L D + LP G N
Sbjct: 536 VLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084
LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R + GRTV+ H+
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAHR- 651
Query: 1085 SIDIFEAFDELLLMKRG 1101
+ A D ++++++G
Sbjct: 652 -LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 76/288 (26%), Positives = 115/288 (39%), Gaps = 59/288 (20%)
Query: 168 ESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV 227
E + + +L + Q LKDV+ + M ++GP GAGK+TL+ +L G V
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG------LV 54
Query: 228 RFQSNKFLI--IRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 285
S + L ++I K GK EL + +R I Q ++V E +
Sbjct: 55 DPTSGEILFNGVQITK---LKGK------ELRKL--RRDIGMIFQQFNLVPRLSVLENV- 102
Query: 286 FSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345
GR T L S+ +K Q + DA E + D +
Sbjct: 103 LLGRLGYTSTWRSLFGLFSKEDKAQAL------DAL---------ERVGILDKAYQR--- 144
Query: 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405
A T+ SGGQ++RV LV K++L DE LD + ++ LK
Sbjct: 145 ---ASTL---------SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192
Query: 406 MVHIMDVTMIVALLQPAPETYDL----FDDIILISEGQIVYHGPRDNV 449
+ +T+IV L Q DL D II + G+IV+ GP +
Sbjct: 193 INQEDGITVIVNLHQ-----VDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
L VS G L ++G SG GKTTL++++AG T G I+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
G Q + P + + +++ + LR ++ +R+ +++ LV L+ +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW- 131
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG 1074
LS R+R+ IA L P ++ +DEP LD A+ ++ + +TG
Sbjct: 132 ----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLDLWQETG 183
Query: 1075 RTVVCTIHQPSIDIFEAF---DELLLMKRG-GRVIYAGPLG 1111
+ V+ H DI EA L+++ G GRV+ PL
Sbjct: 184 KQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L S G + AL+GV+G+GK+TL L G G I I G P +Q +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLV 80
Query: 961 GYC---EQTDIHSPHVTLYESLL------YSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
Y E+ D P L E ++ + WLR + D R+I V + V++
Sbjct: 81 AYVPQSEEVDWSFP--VLVEDVVMMGRYGHMGWLRRAKKRD---RQI-VTAALARVDMVE 134
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
R +G LS Q+KR+ +A + +I +DEP +G+D + A ++ +R
Sbjct: 135 FRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
D G+T++ + H + E D +++K G V+ +GP
Sbjct: 190 DEGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 70/256 (27%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAG-------KLHENLRVRFQSNKFLIIRIWKTEQASGK 248
+T + G GAGK+TL+ +AG + N V F S K + +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP---------- 71
Query: 249 ITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 308
QR + Q + VRE L F G + +R +
Sbjct: 72 -----------PQQRKIGLVFQQYALFPHLNVRENLAF-------GLKR-------KRNR 106
Query: 309 QQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKR 368
+ I D +D L+ Y +L SGG+K+R
Sbjct: 107 EDRISVDELLDLL--------GLDHLLNRYPAQL-------------------SGGEKQR 139
Query: 369 VTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDL 428
V L ++LL+DE + LD + Q+ LKQ+ +++ +I + E L
Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYL 198
Query: 429 FDDIILISEGQIVYHG 444
D I+++ +G++ Y G
Sbjct: 199 ADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKK- 952
D L ++ + G +TA++G +GAGK+TL L G + + G I D K Y +K
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76
Query: 953 -QETFARVSGYCEQTDIHSPHVTLYESLLYSAW-LRLSSDVDTKKRKIFVDEVMELVELK 1010
+ V + D ++Y+ + + A L+L D + +KR VD ++ ++
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-EVRKR---VDNALKRTGIE 132
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
L+D + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 133 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187
Query: 1071 V-DTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYAG 1108
+ G T++ H IDI + D + +MK GRVI G
Sbjct: 188 QKELGLTIIIATH--DIDIVPLYCDNVFVMKE-GRVILQG 224
|
Length = 283 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARV 959
L VS + G L+G SG GKTTL+ ++AG +T G+I + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
Q PH+T++E++ + L+ + K+R V E ++LV+L+ +
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYANRKP-- 128
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 3e-11
Identities = 62/280 (22%), Positives = 101/280 (36%), Gaps = 81/280 (28%)
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
+Q L+ VS V+ + LLG GAGKTTL+ + G ++R
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG----------------LVRP---- 55
Query: 244 QASGKITYCGHELNEFVPQRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
SG+I + G ++ P AY+ + +TV E L L
Sbjct: 56 -RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENL--------------L 100
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY--VLKLLGLDICADTMVGDEM 357
L R ++ + D E V + LK E
Sbjct: 101 LG-AYARRDKEAQERDLEE----------------VYELFPRLK--------------ER 129
Query: 358 RRG----ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
R +SGG+++ + L+ K+LL+DE S GL +I + +K+ +
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE---LRKEG 186
Query: 414 MIVALL--QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ LL Q A ++ D ++ G+IV G +L
Sbjct: 187 GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 49/184 (26%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 948
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNI 76
Query: 949 YPKKQETFA---RVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Y K + RV G Q P+ ++Y+++ Y LRL D E
Sbjct: 77 YDPKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNVAYG--LRLHGIKD--------KE 121
Query: 1003 VMELVELKPLRDALVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052
+ E+VE L+ A L GLS Q++RL IA L P ++ MDEPT
Sbjct: 122 LDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 1053 SGLD 1056
S LD
Sbjct: 178 SALD 181
|
Length = 253 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-11
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KKQET 955
+L V + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 956 FARVSGYCEQTDI-------------HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
RV+ + T + +PH + R + +T + V+
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------RFDTWTETDRAA--VER 122
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
ME + P V LS +R+R+ +A L ++ +DEPT+ LD
Sbjct: 123 AMERTGV----AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYAGP 1109
+ VR VD G+T V IH +D+ + DEL+L+ GRV AGP
Sbjct: 178 TLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLA-DGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 66/279 (23%), Positives = 115/279 (41%), Gaps = 70/279 (25%)
Query: 179 SKKRDVQ-ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
+K Q L +VS + R+ LGP GAGK+T M + G L +
Sbjct: 9 TKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD------------- 55
Query: 238 RIWKTEQASGKITYCGHEL--NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 295
SG + CG ++ N QR Y+ +H+ + +M VRE L F G+
Sbjct: 56 --------SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM-- 105
Query: 296 RYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD 355
+ +Q ++ +++L+GL +G
Sbjct: 106 --------KGQLLKQRVEE------------------------MIELVGLRPEQHKKIGQ 133
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
+S G ++RV + L+ KVL++DE +TGLD + +I +K + D T+I
Sbjct: 134 -----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKTII 186
Query: 416 VA--LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEF 452
++ ++Q E + D +I+I++G+IV D +
Sbjct: 187 LSTHIMQ---EVEAICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 71/275 (25%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
Q LK+++ + P ++GP GAGK+TL+ + ++
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR----------------LVEP--- 54
Query: 243 EQASGKITYCG--------HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 294
+SG I G +L + +R I QH +TV E + GR
Sbjct: 55 --SSGSILLEGTDITKLRGKKLRKL--RRRIGMIFQHYNLIERLTVLENV-LHGRLGYKP 109
Query: 295 TRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVG 354
T LL S +K++ + L+ +GL A
Sbjct: 110 TWRSLLGRFSEEDKERAL-------------------------SALERVGLADKAYQRA- 143
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D++ SGGQ++RV L ++L DE LD T+ Q+ +LK++ +T+
Sbjct: 144 DQL----SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITV 199
Query: 415 IVALLQPAPETYDL----FDDIILISEGQIVYHGP 445
I+ L Q DL D I+ + G+IV+ G
Sbjct: 200 IINLHQ-----VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 28/166 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKKQETFA 957
L VS + G + +G +GAGK+T M ++ G Y+ G +++ G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 958 --RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R GY + H+P LY + +L+ + + K ++ V E++EL
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL------ 120
Query: 1016 LVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
VGL + LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 121 -VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 29/213 (13%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFA 957
L +S + + G A++G SG+GK+TL ++ G G +++ G KQ ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
+ GY Q V L+ + R + D +K ++E +L + + ++
Sbjct: 392 KHIGYLPQ------DVELFPGTVAENIARFGENADPEK-------IIEAAKLAGVHELIL 438
Query: 1018 GLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
LP G LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 1069 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
G TVV H+PS + D++L+++ G
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 25/222 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KKQET 955
+L +S PG A++G +GAGKTTL+ +L G GD+ + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 956 FARVSGYCE-QTDIHSPHVTLYESLLYSAW------LRLSSDVDTKKRKIFVDEVMELVE 1008
+ G + ++ S + + + ++EL+
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA---AQWLLELLG 160
Query: 1009 LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
K L D G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 161 AKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE 215
Query: 1069 --NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
++ H +I F LL+K G V+ G
Sbjct: 216 ELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953
D +L +S G AL+G SG+GK+TL++++ + G I I G+ +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRD 68
Query: 954 ETFA---RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
T A R G Q D+ + T+ E++ Y + +EV E
Sbjct: 69 YTLASLRRQIGLVSQ-DVFLFNDTVAENIAYG------------RPGATREEVEEAARAA 115
Query: 1011 PLRDALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD +
Sbjct: 116 NAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175
Query: 1062 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
+V + + RT H+ S I A D +++++ G V
Sbjct: 176 LVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIE-GDIKISGYP--KKQ 953
+LH + +PG + A++G SG+GKTTL+ L + G I GDI I +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 954 ETFARV----SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
+ R G+ Q PH T+ E+++ + V + ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 1010 KPLRDALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
A VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1065 RTVRNTVDTGRTVVCTIHQPS 1085
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 59/274 (21%), Positives = 102/274 (37%), Gaps = 79/274 (28%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKF 234
++ S K+ +IL D+S + + L G GAGKTTL LAG
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--------------- 48
Query: 235 LIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGV 293
+I+ ++SG I G + +++ Y+ Q D +VRE L
Sbjct: 49 -LIK-----ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------ 96
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
+K + ++ VLK L L
Sbjct: 97 ----------------------------LKELDAGNEQAE----TVLKDLDLYALK---- 120
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
+ +SGGQK+R+ L+ +L+ DE ++GLD ++ + +++ +
Sbjct: 121 -ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE-LAAQGKA 178
Query: 414 MIVALLQPAPETYDL-F-----DDIILISEGQIV 441
+IV T+D F D ++L++ G IV
Sbjct: 179 VIVI-------THDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 6e-11
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 34/282 (12%)
Query: 892 GVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK---- 945
R+ + VS PG + ++G SG+GK+TL L G + G G++
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 946 -ISGYPKKQETFARVS--GYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKRKIFV 1000
+ G +++ R Q + S P +T+ + + + L +++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR--A 133
Query: 1001 DEVMELVELKP--LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
E++E V L RD P + LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 134 VELLEQVGLPDPERRDRY---P--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVT 188
Query: 1059 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP----LGRE 1113
A ++ +++ + G V+ H + + E D +++M + G ++ GP L
Sbjct: 189 TQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGPTEEILSNP 246
Query: 1114 SH----KLIEYFEAVPGVPKIKDA---YNPATWMLEVSNISV 1148
H L+ + I+ A +L V N+S
Sbjct: 247 QHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSK 288
|
Length = 539 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 7e-11
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 17/214 (7%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKKQ---ET 955
L +VS RPG A++G G+GK+TL+ +L G Y EG + + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R GY Q D + TL +++ A + D + + V E V P
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADDEEILRAAELAG-VTEFVRRHPDGLD 592
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
+ LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++ + G+
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGK 651
Query: 1076 TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
T+V H+ S + + D +++M GR++ GP
Sbjct: 652 TLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKKQETFARVSGYCEQT 966
G L L+G +GAGKTTL+ R G I +G +K++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 967 D-------IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
I H + + WLR D V + + V L L D VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADF----AAVRDALRRVGLTELADRPVG- 112
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 1080 TIHQPSIDIFEAF---DELLLMKRGGRVIYAG 1108
T H D+ +A D ++L+ GRVI G
Sbjct: 169 TTH----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 7e-11
Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 60/281 (21%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSG 961
VS + + G + AL+G +GAGK+TLM +L G + G+I++ G
Sbjct: 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE----------- 67
Query: 962 YCEQTDIHSP-------------HVTLYESL---------LYSAWLRLSSDVDTKKRKIF 999
I SP H L +L L + L +D ++ +
Sbjct: 68 ----VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGL---IDRRQARAR 120
Query: 1000 VDEVMEL--VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
+ E+ E + + P DA V LS +++R+ I L ++ +DEPT+ L
Sbjct: 121 IKELSERYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI--YAGPLGRESH 1115
+ A + +R G+T++ H+ ++ D + ++ R G+V+
Sbjct: 174 QEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVL-RRGKVVGTVDPVAETTEE 231
Query: 1116 KLIE-YFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVD 1155
+L E + +K P +LEV ++SV+++ GV
Sbjct: 232 ELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVT 272
|
Length = 501 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 7e-11
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 30/171 (17%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQ---- 953
L+ +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 954 ---ETFARVSGYCEQT-----DIHSP-HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM 1004
F + + + T ++ P +++ SL + RLS++ + ++EV+
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF----RLSAEEKDR-----IEEVL 128
Query: 1005 ELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
E + L D L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 129 ETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 7e-11
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKI 946
G G+ L++VS G ++G SG+GK+TL +LAG + + G I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 947 SG--YPKKQETFARVSGYCE----QTDIHS---PHVTLYESLLYSAWLRLSSDVDTKKRK 997
G K+ A Y D +S P T+ L + +++
Sbjct: 67 DGKPLAPKKRAKAF---YRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQR 120
Query: 998 IFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
I E+++ V L P L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 121 I--AELLDQVGLPP--SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-11
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISG-----YPKKQ 953
LL +V+ G + LMG SG GK+TL+ + G G + G++ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
R G Q + PH+++ ++LL++ L + + R+ + +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
P LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-11
Identities = 66/294 (22%), Positives = 108/294 (36%), Gaps = 84/294 (28%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKF 234
L ++ +V+ + DVS ++ L+G G+GK+TL LAG L
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL------------- 341
Query: 235 LIIRIWKTEQASGKITYCGHELN----EFVPQRTCAYIS-QH-----DLHHGEMTVRETL 284
+SG I + G +L+ E R + Q + MTV +
Sbjct: 342 --------PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGD-- 388
Query: 285 DFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344
+LAE R +G E +L+L+G
Sbjct: 389 --------------ILAEPLRIHGG-----------------GSGAERRARVAELLELVG 417
Query: 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK 404
L D +SGGQ++RV L K+L++DE + LD S Q+ LK
Sbjct: 418 LP----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 405 QMVHIMDVTMIVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVLEF 452
+ + +T + ++DL D + ++ +G+IV GP + V E
Sbjct: 474 DLQEELGLTYLFI-------SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 9e-11
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 29/223 (13%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKK---- 952
+L ++ F +T L+G +G GK+TL L+G R G + K Y K+
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 953 -QETFARVSGYCEQ----TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV 1007
++ A V EQ TDI S + +S + + +R VDE + LV
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDS-------DIAFSLRNLGVPEAEITRR---VDEALTLV 124
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
+ + R + LS Q+KR+ IA LV + +DEPT+GLD ++ +
Sbjct: 125 DAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179
Query: 1068 RNTVDTGRTVVCTIHQPSID-IFEAFDELLLMKRGGRVIYAGP 1109
R V G V+ + H ID I+E D + ++++G + + P
Sbjct: 180 RRIVAQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 60/284 (21%), Positives = 107/284 (37%), Gaps = 84/284 (29%)
Query: 172 GLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQS 231
+ + V+ LKDV+ ++ ++GP G+GK+TL L L G L
Sbjct: 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGL---------- 54
Query: 232 NKFLIIRIWKTEQA-SGKITYCGHELNEFVPQ-------RTCAYISQ-HDLHHGEMTVRE 282
++ SG++ G +L + + + ++ Q +L ++TV E
Sbjct: 55 -----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLE 102
Query: 283 TLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342
+ EL + G A + + V G E L+ +L
Sbjct: 103 NV-------------ELPLLI------AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143
Query: 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTG-LDSSTTFQICK 401
SGGQ++RV L+ K++L DE TG LDS T ++ +
Sbjct: 144 -------------------SGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLE 183
Query: 402 FLKQMVHIMDVTMIVALLQPAPETYDL-----FDDIILISEGQI 440
L+++ T+I+ T+D D +I + +G+I
Sbjct: 184 LLRELNKERGKTIIMV-------THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 79/284 (27%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
L D++ +K ++T L+G GAGK+TL+ L G L
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL---------------------AP 373
Query: 245 ASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELL 300
G+I G +L + P ++ +++SQ+ L G T+RE + LL
Sbjct: 374 TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG--TIRENI--------------LL 417
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
A ++ EI A + + ++V K GLD T++G E G
Sbjct: 418 ARPDASDE--------EIIAALDQAGLL--------EFVPKPDGLD----TVIG-EGGAG 456
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ +R+ L+ A +LL+DE + LD+ T I + L++ T++V
Sbjct: 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE--LAKQKTVLVI--- 511
Query: 421 PAPETYDL-----FDDIILISEGQIVYHGPRDNVLE---FFEQM 456
T+ L D I+++ G++V G + + E + +
Sbjct: 512 ----THRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 75/267 (28%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
Q+L D++ + P + +L GP G+GKTTL L L G L ++ Q
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTL-LTLIGGL-------------------RSVQ 58
Query: 245 ASGKITYCGHEL-----NEFVP-QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRY 297
G + G EL E V +R YI Q H+L G +T R+ + +
Sbjct: 59 -EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL-GFLTARQNVQMA---------L 107
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
EL LS +E + A A +L+ +GL GD +
Sbjct: 108 ELQPNLSYQE--------------ARERARA----------MLEAVGL--------GDHL 135
Query: 358 R---RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
+SGGQK+RV LV K++L DE + LDS + + + ++++ T
Sbjct: 136 DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCT- 194
Query: 415 IVALLQPAPETYDLFDDIILISEGQIV 441
+ ++ D+ D I+ + +G+++
Sbjct: 195 -ILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953
G+ ++L VS + G + A++G SG+GK+TL+ +L G G++ +G +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSK 71
Query: 954 ETFARVS-------GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
+ + G+ Q P T E++ + S + K+R E+
Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER------AYEM 125
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1063
+E L + P LS +R+R+ IA LV PS++ DEPT LD A I+
Sbjct: 126 LEKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 1064 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
M + ++T VV H ++ + D +L MK G
Sbjct: 184 MLELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 59/293 (20%)
Query: 871 LSLTFNQMNYYVD--MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM 928
+++ F+ ++Y P E + +H V+ F G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLI 50
Query: 929 DVLAG--RKTGGYIE-GDIKISGYPKKQE--TFARVSGYCEQTDIHSPHVTLYESLLYSA 983
+ + T G + DI I+ K + + G Q P L+E
Sbjct: 51 QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQF----PESQLFE------ 100
Query: 984 WLRLSSDVDTKKRKIF---------VDEVME-----LVELKPLRDALVGLPGVNGLSTEQ 1029
DT +R+I +DEV L++L RD + P +S Q
Sbjct: 101 --------DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQ 150
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDI 1088
+++ I L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++
Sbjct: 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EV 209
Query: 1089 FEAFDELLLMKRGGRVIYAGP--LGRESHKLIEYFEAVPGVPK----IKDAYN 1135
DE+++MK G V P L ++ KL ++ +P + + + Y
Sbjct: 210 ARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 925 TTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS----GYCEQTDIHSPHVTLYESLL 980
+TL+ ++ G G I + G + ++ G Q P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV 1040
+ K+ +E +E V L D V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1041 ANPSIIFMDEPTS 1053
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 60/198 (30%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 916 LMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQET---FARVSGYCEQTDI 968
L+G SG GKTT + ++AG T G YI G PK ++ F + Y
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALY------ 84
Query: 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
PH+T+Y+++ + LR + +R V EV EL++++ L D LS
Sbjct: 85 --PHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGG 134
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCTIHQPSI 1086
QR+R+ + +V P + MDEP S LDA+ + MR R G T + H
Sbjct: 135 QRQRVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRAELKRLQQRLGTTTIYVTH---- 189
Query: 1087 DIFEAF---DELLLMKRG 1101
D EA D + +M G
Sbjct: 190 DQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 37/215 (17%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY-----------PKKQETFAR 958
G+ TAL G SG+GKT+L++++AG EG I+++G P ++ R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK----R 76
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
GY Q PH T+ +L Y W K + D+++ L+ ++ L L
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDR 124
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTV 1077
PG LS +++R+ I L+ P ++ MDEP + LD R I+ R + +
Sbjct: 125 YPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182
Query: 1078 VCTIHQPSID-IFEAFDELLLMKRGGRVIYAGPLG 1111
+ H S+D + D +++++ G+V +GPL
Sbjct: 183 LYVSH--SLDEVLRLADRVVVLEN-GKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 14/216 (6%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 958 RVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
R G Q P T+YE++ + + ++R V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR------VSEVLDLVGLKHKA 131
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112
V+ H +++ +L GR++ G
Sbjct: 190 VLMATH--DLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 912 VLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPKKQETFA--RVSGYC 963
+ ALMG SG GK+TL+ + L +EG++++ G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-----LRDALVG 1018
Q PH+T+Y+++ + ++L+ V +KK +DE +E K ++D L
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKE---LDERVEWALKKAALWDEVKDRLND 145
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
P LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V
Sbjct: 146 YPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIV 202
Query: 1079 CTIHQPS 1085
H P+
Sbjct: 203 LVTHSPA 209
|
Length = 253 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ---ET 955
L +S A + G ++G SG+GK+TL +L G T G + D G +Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R GY Q V L++ + R + D +K V+E L + +
Sbjct: 408 LGRHIGYLPQD------VELFDGTIAENIARFGEEADPEK-------VIEAARLAGVHEL 454
Query: 1016 LVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
++ LP G G LS QR+R+ +A L +P ++ +DEP S LD+ A +
Sbjct: 455 ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ G TVV H+PS + D++L+++ GR+ GP
Sbjct: 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 31/227 (13%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 947
+ +L VS G A++G SG+GK+T++ DV +G I+G I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDG-QDIR 66
Query: 948 GYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS-SDVD----TKKRKIFVDE 1002
++ R G Q D + T+ ++ Y R +D + K +I D+
Sbjct: 67 EV--TLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYG---RPDATDEEVIEAAKAAQIH-DK 119
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+M + D +VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 120 IMRFPDG---YDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ +R V GRT + H+ S I A D+++++K GR++ G
Sbjct: 176 IQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLK-DGRIVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 68/265 (25%), Positives = 115/265 (43%), Gaps = 71/265 (26%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L +VS ++ ++G G+GK+TL+ LAG + S
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY---------------------KPTS 58
Query: 247 GKITYCGHELNEFVPQ---RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G + G ++ + P R Y+ Q L +G T+R+ + LG
Sbjct: 59 GSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG--TLRDNI-----TLG---------- 101
Query: 303 LSRREKQQGIKPDPEID--AFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEMRR 359
P D ++A +AG VTD+V K GLD +G E R
Sbjct: 102 ------------APLADDERILRAAELAG-----VTDFVNKHPNGLD----LQIG-ERGR 139
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
G+SGGQ++ V L+ +LL+DE ++ +D ++ ++ + L+Q+ + D T+I+
Sbjct: 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITH 197
Query: 420 QPAPETYDLFDDIILISEGQIVYHG 444
+P+ DL D II++ G+IV G
Sbjct: 198 RPS--LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQET 955
++++ VS G + L+G +GAGKTT ++ G R G I D I+ P +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR- 76
Query: 956 FARVS-GYCEQTDIHSPHV----TLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVEL 1009
AR+ GY Q + T+ ++++ A L + D+ +RK +D ++E +
Sbjct: 77 -ARLGIGYLPQ----EASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHI 129
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
LRD+ + LS +R+R+ IA L ANP I +DEP +G+D A + R +++
Sbjct: 130 THLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184
Query: 1070 TVDTGRTVVCTIH 1082
D G V+ T H
Sbjct: 185 LKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV--TMIV 416
RG+S Q+KR+T G L +L +DE ++GLDS + I +FLK++ D ++
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA---DSGQAILC 163
Query: 417 ALLQPAPETYDLFDDIILISE-GQIVYHG 444
+ QP+ ++ FD ++L+ G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 60/281 (21%), Positives = 100/281 (35%), Gaps = 78/281 (27%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
P+ V+ L DVS +K L+G G+GK+TL A+ G L +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK-------------- 56
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ------RTCAYISQHDLH--HGEMTVRETLDFSGR 289
SG I + G +L + + + + Q + + MT+ E + R
Sbjct: 57 ------PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLR 110
Query: 290 CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICA 349
G ++ E E G+ E
Sbjct: 111 IHGKLSKKEARKEA-VLLLLVGVGLPEE-------------------------------- 137
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
V + +SGGQ++RV L K+L+ DE ++ LD S QI LK++
Sbjct: 138 ---VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194
Query: 410 MDVTMIVALLQPAPETYDL------FDDIILISEGQIVYHG 444
+ +T++ T+DL D + ++ G+IV G
Sbjct: 195 LGLTLLFI-------THDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-10
Identities = 76/301 (25%), Positives = 118/301 (39%), Gaps = 73/301 (24%)
Query: 179 SKKR--DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLI 236
KKR L D+S +K + LLGP GAGK+TL+ +AG
Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-------------- 53
Query: 237 IRIWKTEQASGKITYCGHEL----NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 292
+G+I G L N V R ++ QH MTV + + F G
Sbjct: 54 -------PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-----G 101
Query: 293 VGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352
+ R E +E R + V +LL +
Sbjct: 102 LKVRKERPSEAEIRAR------------------------------VEELL--RLVQLEG 129
Query: 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412
+ D +SGGQ++RV L KVLL+DE LD+ ++ ++L+++ + V
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQE 472
T V + E +L D ++++++G+I GP D V + P + VA FL E
Sbjct: 190 T-TVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGE 240
Query: 473 V 473
V
Sbjct: 241 V 241
|
Length = 345 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 58.9 bits (144), Expect = 8e-10
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 179 SKK-RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
SK+ L D+S V+ + LLGP GAGKTTL+ + G ++
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG----------------LL 50
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSG 288
+ SG+I G ++ + + R Y+ + + +TVRE L SG
Sbjct: 51 K-----PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 66/289 (22%), Positives = 113/289 (39%), Gaps = 75/289 (25%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
+ V ++DVS V+P + ++G G+GK+TL LAL G L E R+
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI---------- 65
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ-------RTCAYISQHDLHH--GEMTVRETLDFSG 288
SG++ G +L + + A I Q + MT+ + +
Sbjct: 66 -------TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR--- 115
Query: 289 RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDIC 348
E L + + +A +AV + L+ +GL
Sbjct: 116 ---------EALRLHGKGSRA---------EARKRAVEL------------LEQVGLP-- 143
Query: 349 ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408
D D +SGG ++RV L K+L+ DE +T LD +T QI LK +
Sbjct: 144 -DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR 202
Query: 409 IMDVTMIVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVLE 451
+ + ++ T+DL D ++++ +G+IV GP + +L
Sbjct: 203 ELGMAVLFI-------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 8e-10
Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 53/214 (24%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D +ILK V+ VK + ++GP G+GK+TL +AG H + V
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEV--------------- 54
Query: 243 EQASGKITYCGHELNEFVPQ---RTCAYIS-QHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
SG I + G +L E P R +++ Q+ ++ E L R
Sbjct: 55 --TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFL-----------RSA 101
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
L A RR + + +D L+ L LLG+D + + +
Sbjct: 102 LNA---RRSARG----EEPLDLL--------DFLKLLKA-KLALLGMD---EEFLNRSVN 142
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
G SGG+KKR +M + K+ ++DEI +GLD
Sbjct: 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-10
Identities = 68/240 (28%), Positives = 103/240 (42%), Gaps = 36/240 (15%)
Query: 881 YVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 938
Y+ M K+ G + L SV+ PG + AL+G +GAGK+TLM VL+G T G
Sbjct: 5 YISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG 60
Query: 939 YIEGDIKISGYPKKQETFARVSG----YCEQTDIHSPHVTLYESLLYSAWLRLSSD---- 990
I I Y K A G Y E + I +T+ E+L R +
Sbjct: 61 TI--TINNINYNKLDHKLAAQLGIGIIYQELSVID--ELTVLENLYIG---RHLTKKVCG 113
Query: 991 ---VDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047
+D ++ ++ ++ V LK D V LS ++ L IA L+ + +I
Sbjct: 114 VNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVII 168
Query: 1048 MDEPTSGLDARAAA---IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
MDEPTS L + ++M +R G +V H+ + +I D +MK G V
Sbjct: 169 MDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
+ L + + G A++G SG+GK+TL+ +LAG +G I ++G
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE-------- 401
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLR--------LSSDVDTKKRKIFVDEVMELVEL- 1009
++ EQ + V L+S LR +SD + + ++ V L
Sbjct: 402 IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE-------LWAALQQVGLE 454
Query: 1010 KPLRDALVGLP-----GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
K L A GL G LS +R+RL +A L+ + + +DEPT GLD V+
Sbjct: 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+ + G+T++ H+ E D ++++ G
Sbjct: 515 ALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 62/281 (22%), Positives = 101/281 (35%), Gaps = 94/281 (33%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L DVS V+P R LLGP GAGK+TL L
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYV---------------------AQE 55
Query: 247 GKITYCGHELNEFVPQRTCAYI------SQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
G+I+ GH+L P+ A + DL +++VR+ L + + L
Sbjct: 56 GQISVAGHDLRR-APRAALARLGVVFQQPTLDL---DLSVRQNLRY----------HAAL 101
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
LSR E + I L LGL AD V R
Sbjct: 102 HGLSRAEARARIAEL------------------------LARLGLAERADDKV-----RE 132
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV-----------HI 409
++GG ++RV L+ +LL+DE + GLD ++ I ++ + H+
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHL 192
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+D ++ D ++++ G+++ G +
Sbjct: 193 VDE------IEAD-------DRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 75/303 (24%), Positives = 120/303 (39%), Gaps = 95/303 (31%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
D + D+S +K LLGP G GKTTL+ +AG F+
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG---------FEQ---------- 56
Query: 242 TEQASGKITYCGHELNEFVP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGV 293
+SG+I G ++ + VP +R + Q H MTV E V
Sbjct: 57 --PSSGEILLDGEDITD-VPPEKRPIGMVFQSYALFPH------MTVEEN---------V 98
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
+ L K + EI A ++ L+L+GL+ AD
Sbjct: 99 A--FGL--------KVRKKLKKAEIKARVEEA--------------LELVGLEGFADRKP 134
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
+SGGQ++RV LV KVLL+DE + LD+ Q+ K LK++ + +T
Sbjct: 135 HQ-----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 414 MIVALLQPAPETYD------LFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVA 467
+ T+D + D I ++++G+I G + + ++ P + VA
Sbjct: 190 FVYV-------THDQEEALAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVA 234
Query: 468 DFL 470
DF+
Sbjct: 235 DFI 237
|
Length = 352 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 64/213 (30%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ +S + +L GP G+GKTTL+ +AG L
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--------------------- 52
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
A+G I G ++++ C Y+ + +TV E L+F LG
Sbjct: 53 PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---------- 102
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+ +I A ++AV +A + +S
Sbjct: 103 ----------GEELDIAAALEAVGLAP-----------------------LAHLPFGYLS 129
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
GQK+RV +LV + ++DE + LD++
Sbjct: 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +S R G + ALMG +GAGK+TL+ +L+G G I I G + FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 961 GYCEQ--TDIH-----SPHVTLYESLLYSAWL-RLSSDVDTKKRKIFVDEVMELVELKPL 1012
I+ P +T+ E+L +L +L R++ E E +L+ L
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
GR ++ H+ +IF D + + K G V
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 72/326 (22%), Positives = 111/326 (34%), Gaps = 103/326 (31%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
V L DVS + + ++G GAGK+TL LR LI +
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTL-----------LR--------LINLL 55
Query: 240 WKTEQASGKITYCGHELNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 293
SG + G +L ++ I QH TV E + F
Sbjct: 56 --ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE---- 109
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
LA + + E +Q + +L+L+GL
Sbjct: 110 ------LAGVPKAEIKQRVAE------------------------LLELVGLS------- 132
Query: 354 GDEMRR---GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ----- 405
D+ R +SGGQK+RV L K+LL DE ++ LD TT I + LK
Sbjct: 133 -DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191
Query: 406 -----MV-HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFK 459
++ H M+V + D + ++ +G++V G V E F
Sbjct: 192 GLTIVLITHEMEVVKRIC------------DRVAVLDQGRLVEEGT---VSEVFAN---- 232
Query: 460 CPERKGVADFLQEVTSKKDQEQYWFR 485
P+ +F+ E E+ R
Sbjct: 233 -PKHAITQEFIGETLEIDLPEELLER 257
|
Length = 339 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 27/233 (11%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 944
G + L VS G + ++G SGAGK+TL+ ++ R T G +++G
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ- 68
Query: 945 KISGYPKKQETFARVS-GYCEQTDIHSPHV----TLYESLLYSAWLRLSSDVDTKKRKIF 999
++ + + R G Q H ++ T++E++ + L L+ V + K
Sbjct: 69 DLTALSEAELRQLRQKIGMIFQ---H-FNLLSSRTVFENVAFP--LELAG-VPKAEIKQR 121
Query: 1000 VDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-AR 1058
V E++ELV L D P LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 122 VAELLELVGLSDKADRY---PA--QLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYAGPL 1110
+I+ + G T+V H+ +++ + D + ++ + GR++ G +
Sbjct: 177 TQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEGTV 226
|
Length = 339 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 22/202 (10%)
Query: 887 EMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 944
E D L +S G + G +G+GKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 945 KISGYPKKQE--TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
++G P + + AR Y +++ E+L + W SD V+E
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQ-------VEE 108
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ V L D V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 1063 VMRTVRNTVDTGRTVVCTIHQP 1084
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
LL +S G L L G +GAGKTTL+ ++AG +G+I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 960 SGYC---EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
C ++ I +P++TL E+ LY D+ + + E+ L L+ L D
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1077 VVCTIHQ 1083
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 29/163 (17%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
++++S + L+G +GAGK+TL+ ++ G R T G+I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-----KPLR 1013
+ E ++ ++T E+L L D +DEV+ +V+L K +
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLPDSR-------IDEVLNIVDLTNTGKKKAK 123
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
+G+ ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 QFSLGM----------KQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 63/293 (21%), Positives = 111/293 (37%), Gaps = 80/293 (27%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
P+ V+ + VS +K + ++G G+GK+ L A+ G L +
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP------------- 58
Query: 238 RIWKTEQASGKITYCGHELNEFVPQRTC-------AYISQHDLHHGEMTVRETLDFSGRC 290
G+I + G +L + A I Q MT +L+
Sbjct: 59 ---NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ-----DPMT---SLNPVMT- 106
Query: 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350
+G + +AE+ R + K + A +A+ + L+L+G+
Sbjct: 107 --IG---DQIAEVLRLHGKGLSKKE----AKERAIEL------------LELVGIP---- 141
Query: 351 TMVGDEMRRG------ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK 404
D RR +SGG ++RV L K+L+ DE +T LD + QI LK
Sbjct: 142 ----DPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLK 197
Query: 405 QMVHIMDVTMIVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVLE 451
++ +I+ T+DL D + ++ G+IV GP + + +
Sbjct: 198 ELQREKGTALILI-------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 65/266 (24%), Positives = 99/266 (37%), Gaps = 67/266 (25%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D + ++ VS V+ + LLGP GAGKTT + L L
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL--------------------- 50
Query: 243 EQASGKITYCGH----ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
+ SG+ T GH E E +R + Q E+T E L R GV
Sbjct: 51 KPTSGRATVAGHDVVREPREV--RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPG--- 105
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
AE R D +L +GL AD +V
Sbjct: 106 --AERRER-----------------------------IDELLDFVGLLEAADRLV----- 129
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+ SGG ++R+ LV +VL +DE + GLD T + ++++++ +T I+
Sbjct: 130 KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT-ILLT 188
Query: 419 LQPAPETYDLFDDIILISEGQIVYHG 444
E L D + +I G+I+ G
Sbjct: 189 THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 69/275 (25%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
++L VS ++P + +LGP GAGK+TL+ AL+G+L
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL---------------------SP 53
Query: 245 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
SG++T G LN + P + H + +L F V ++
Sbjct: 54 DSGEVTLNGVPLNSWPP-------EELARHRAVLPQNSSLAFPFTVQEV-------VQMG 99
Query: 305 RREKQQGIKPDPE---IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
R + G +P+ + + A ++G DY R +
Sbjct: 100 RIPHRSGREPEEDERIAAQALAATDLSGLAGR---DY--------------------RTL 136
Query: 362 SGGQKKRVTTGEML------VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
SGG+++RV +L V + + L +DE ++ LD + + +Q+ + +
Sbjct: 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAV 194
Query: 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+A+L D I+L+ +G+++ G +VL
Sbjct: 195 LAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 68/207 (32%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYIEGDIKISG---YPK 951
L+SVS F P +TAL+G SG+GK+TL M+ L T I G I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 952 KQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV-- 1007
+ +T + G Q P +++YE+++Y LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKD----KQVLDEAVEKSLK 130
Query: 1008 ------ELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060
E+K L D+ +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 131 GASIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 1061 AIVMRTVRNTVD--TGRTVVCTIHQPS 1085
+ T+ D T V ++ Q S
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR--VSGYCE 964
G + A++G SGAGK+TL++++AG +T G+I I+G A VS +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 965 QTDIHSPHVTLYES--LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
+ ++ + H+T+ ++ L S L+L++ +K V+ V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNA-EQREK----VEAAAAQVGLA---GFLKRLPGE 129
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1078
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1079 CTIHQPSIDIFEAFDELLLMKRGGRVIYAGP----LGRESHKLIEYF 1121
H P D D ++ + GR+ G L ++
Sbjct: 185 MVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQELLSGKASAAALLG 229
|
Length = 231 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 75/283 (26%)
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
+ + DVS V+P + L+GP GAGKTTL + G +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG----FYKPS--------------- 57
Query: 244 QASGKITYCGHELNEFVPQRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
SG + + G ++ P R I+ Q +TV E + +G R L
Sbjct: 58 --SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENV-----AVGAHARLGL 110
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
L R ++ + +A A + +L+ +GL AD G+
Sbjct: 111 SGLLGRPRARKEER---------EARERARE--------LLEFVGLGELADRPAGN---- 149
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ----------MV-H 408
+S GQ++R+ L K+LL+DE + GL+ T ++ + +++ ++ H
Sbjct: 150 -LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEH 208
Query: 409 IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
M + M L D I++++ G+++ G + V
Sbjct: 209 DMKLVM------------GLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 55/217 (25%), Positives = 105/217 (48%), Gaps = 35/217 (16%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKKQ--- 953
L ++ G AL+G SGAGKT+L++ L G ++ +G +KI+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
E++ + + Q + PH TL +++L D +++ + +E +
Sbjct: 419 ESWRKHLSWVGQ-NPQLPHGTLRDNVLLGN-----PDASD-------EQLQQALENAWVS 465
Query: 1014 DALVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
+ L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM
Sbjct: 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+ + N +T + HQ ++ +D++ +M+ G
Sbjct: 526 QAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 25/171 (14%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKK 952
L +S + + G L+G SG GKTTL+ ++AG R+T G I +G I+ P +
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
+ + G Q+ P++T+ +++ Y + + + V E+++LV
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYGL---KNRGMGRAEVAERVAELLDLV----- 122
Query: 1013 RDALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 123 -----GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 27/169 (15%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YPKKQETFA 957
V+ P +TA +G SG GK+T++ L G +EG++ + G Y + A
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 958 --RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R G Q P +++ ++++ A L+L+ + K +DE++E K LR A
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLRGA 132
Query: 1016 --------LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
+ PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 133 NLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-09
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 20/216 (9%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L S+S PG AL+G SG+GK+TL++++ + G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 961 GYCEQTDIHSPHVTLYESLLYS--AWLRLSSDVDTKKRKIFVDE-VMELVELKPLR-DAL 1016
Q + S V L+ + + A+ R + + + V+ PL D
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 1073
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
GRT + H+ S E D +++M GR++ G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 53/184 (28%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953
D +L VS PG A++G SG+GK+TL+ +L G +T G + G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAG 519
Query: 954 ETFARVSGYC----EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
V + + S +++E++ A L L DE E +
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARM 564
Query: 1010 KPLRDALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060
L + + +P G LS QR+RL IA LV P I+ DE TS LD R
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 1061 AIVM 1064
AIV
Sbjct: 625 AIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-09
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 41/207 (19%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI-- 968
G + L+G SG GKTT++ ++AG + EG I I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 969 --HS----PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
S PH++L E++ Y L++ V ++RK V E +ELV+L D V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1077
+ +S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1078 VCTIHQPSIDIFEAF---DELLLMKRG 1101
+ H S EAF D +++M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 5e-09
Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 80/285 (28%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
PS+ DV ILK +S + P + L+G G GK+T++ +L RF
Sbjct: 11 PSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVV---------SLLERFYDPT---- 56
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 294
SG+I G ++ + + +SQ + + T+ E + +
Sbjct: 57 --------SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------- 100
Query: 295 TRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL-GLDICADTMV 353
KPD + +A A + D+++ L G D T+V
Sbjct: 101 ------------------KPDATDEEVEEAAKKAN-----IHDFIMSLPDGYD----TLV 133
Query: 354 GDEMRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411
G+ RG +SGGQK+R+ L+ K+LL+DE ++ LD+ + + + L + +
Sbjct: 134 GE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKG 188
Query: 412 VTMIV-----ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
T IV + ++ A D I ++ GQ+V G D ++
Sbjct: 189 RTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 356 EMRRGI------SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
E+RR I SGGQ++RV L+ +LL+DE ++GLD ++ ++ + L+++
Sbjct: 70 ELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AE 128
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQ 439
T+I+ P D +I++ +G+
Sbjct: 129 EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 950
Q + +V+ + G + AL+G SG GKTT + D+ G + G I D + I G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 951 KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
R G Q P ++++++++ A L+L+ D D +ME+ E +
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAE-R 127
Query: 1011 PLRDALV--------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
LR A + P GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 128 SLRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-09
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 31/235 (13%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 948
K G ++ L VS + G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 949 Y------PKKQETFARVSGYCEQTDIHSPHV------TLYESLLYSAWLRLSSDVDTKKR 996
K+ R G Q H T++E++ L ++ V +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQ------HFNLLSSRTVFENVALP--LEIAG-VPKAEI 117
Query: 997 KIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
+ V E++ELV L+ DA P LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 118 EERVLELLELVGLEDKADAY---PA--QLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Query: 1057 ARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
++ +R+ + G T+V H+ + + D + +M++ G V+ G +
Sbjct: 173 PETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEK-GEVVEEGTV 225
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 7e-09
Identities = 60/262 (22%), Positives = 107/262 (40%), Gaps = 41/262 (15%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISG---YPKK 952
+ + VS + G + ++G SG+GK+ L + G + + G+I G
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 953 QETFARVSG----YCEQTDIHS--PHVT----LYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
++ ++ G Q + S P +T + E L + S + K+R E
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKER---AIE 133
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
++ELV + L P + LS R+R+ IA+ L NP ++ DEPT+ LD A
Sbjct: 134 LLELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQ 191
Query: 1063 VMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP----LGRESH-- 1115
++ ++ + G ++ H + + E D + +M GR++ GP H
Sbjct: 192 ILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGPVEEIFKNPKHPY 249
Query: 1116 ---------KLIEYFEAVPGVP 1128
+L E +PG P
Sbjct: 250 TRGLLNSLPRLGERLPPIPGSP 271
|
Length = 316 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ 953
D + L ++ G + AL+G +GAGK+TL G + T G + + Y KK
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS 72
Query: 954 ETFARVS-GYCEQT---DIHSPHVTLYESLLYSAW-LRLSSDVDTKKRKIFVDEV-MELV 1007
R + G Q + +P T+ E + + L LS + K+ K + V ME
Sbjct: 73 LLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF 130
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
E KP P + LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ +
Sbjct: 131 ENKP--------P--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
Query: 1068 RNTVDTGRTVVCTIH 1082
+ G T++ + H
Sbjct: 181 YDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET 955
D + L +S + G TAL+G +GAGK+TL+ L G G +K+ G E
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAEN 73
Query: 956 F----ARVSGYCEQTDIHSPHVTLYESLLYSAW-LRLSSDVDTKKRKIFVDEVMELVELK 1010
++V + D T+++ + + + L D + ++R V+E ++ V +
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-EVERR---VEEALKAVRMW 129
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
RD LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 130 DFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ G+TV+ H +D+ + + +++ + GRV+ G
Sbjct: 185 HNQGKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 69/267 (25%), Positives = 108/267 (40%), Gaps = 60/267 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA- 245
L DVS + + LLGP G+GKTTL+ +AG E+
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG----------------------LERPD 55
Query: 246 SGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
SG I + G + + Q R ++ QH MTV + + F L V R E E
Sbjct: 56 SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFG---LRVKPRSERPPEAE 112
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
R K +LKL+ LD AD +SGG
Sbjct: 113 IRAK---------------------------VHELLKLVQLDWLADRYPAQ-----LSGG 140
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424
Q++RV L KVLL+DE LD+ ++ ++L+++ + VT V + E
Sbjct: 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT-VFVTHDQEE 199
Query: 425 TYDLFDDIILISEGQIVYHGPRDNVLE 451
++ D ++++++G+I G D V +
Sbjct: 200 ALEVADRVVVMNKGRIEQVGTPDEVYD 226
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 69/274 (25%), Positives = 103/274 (37%), Gaps = 77/274 (28%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
IL+ VS V +T +LG G GKTTL+ L G L
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL---------------------PV 52
Query: 245 ASGKITYCGHELNEFVPQ----RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
SG I G ++ + P AY+ Q +TV E L G L
Sbjct: 53 KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLL-------TG-----L 100
Query: 301 AELSRREKQQGIKPDPEI-DAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM-- 357
A L RR + K EI + F VLK EM
Sbjct: 101 AALPRRSR----KIPDEIYELFP----------------VLK--------------EMLG 126
Query: 358 RRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
RRG +SGGQ++++ LV K+LL+DE + G+ S I + ++++ + I
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA-I 185
Query: 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449
+ + Q +L D ++ G++V G D +
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 56/272 (20%), Positives = 113/272 (41%), Gaps = 73/272 (26%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D + + ++S V P + LLGP GAGKTT + G L
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL--------------------- 52
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
E G+IT+ G L++ + R Y+ + + +MTV + L + LAE
Sbjct: 53 EPTEGEITWNGGPLSQEIKNRI-GYLPEERGLYPKMTVEDQLKY-------------LAE 98
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
L K + K ++ A+++ + + G++T + + +S
Sbjct: 99 LKGMPKAEIQK---KLQAWLERLEIVGKKTKKIKE-----------------------LS 132
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD---VTMIVA-- 417
G ++++ ++ ++L++DE +GLD + LK + + T+I +
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV----ELLKDAIFELKEEGATIIFSSH 188
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449
++ E L D ++++ +GQ V +G +++
Sbjct: 189 RMEHVEE---LCDRLLMLKKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKKQ--- 953
+L +S PG AL+G SG GK+T++ +L R Y G+I + G +
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RF---YDPTSGEILLDGVDIRDLNL 72
Query: 954 ETFARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDE-VMELVEL 1009
G Q P + T+ E++ Y +V+ +K + + +M L
Sbjct: 73 RWLRSQIGLVSQ----EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL--- 125
Query: 1010 KPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
P D LVG G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 126 -PDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL- 182
Query: 1069 NTVDTGRTVVCTIH 1082
+ GRT + H
Sbjct: 183 DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-08
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSG---YC 963
+PG AL+G SG+GK+T+ ++AG + G +I G P+++ ++
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLANSVAMV 558
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSD---VDTKKRKIFVDEVMELVELKPLRDALVGLP 1020
+Q DI T+ ++L + W D V K D + DA +
Sbjct: 559 DQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSR---PGGYDAELAEG 612
Query: 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1080
G N LS QR+RL IA LV NPSI+ +DE TS LD I+ +R R C
Sbjct: 613 GAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-----RGCTCI 666
Query: 1081 I--HQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
I H+ S I + DE+++++R G+V+ G
Sbjct: 667 IVAHRLST-IRDC-DEIIVLER-GKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYC----EQTD--I 968
A++G +GAGK+TL G G + I G P +E V + + D I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
SP V E + + L D +T + V + ++ L+ LRD + P + LS
Sbjct: 92 FSPTV---EQDIAFGPINLGLDEETVAHR--VSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1087
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1088 IFEAFDELLLMKRGGRVIYAGP 1109
+ E D + +M +G V Y
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTV 222
|
Length = 277 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 40/171 (23%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE 954
+ LL +S G A++G +GAGK+TL+ +LAG G + G +K+ G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKI-FVDEVMELVELKPLR 1013
GY +Q ++D K + + E + + +R
Sbjct: 387 -----IGYFDQH---------------------RDELDPDKTVLEELSEGFPDGDEQEVR 420
Query: 1014 DAL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQET--FARVSGYC 963
+ G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 964 EQTDIHSPHVTLYESLLYS--AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPG 1021
Q P L+E + A+ + + +K + E +E+V L + P
Sbjct: 90 FQF----PESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP- 142
Query: 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1081
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 -FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1082 HQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVP-GVPK 1129
H D+ + D + L+++G + P + + +++ +A GVPK
Sbjct: 202 HLMD-DVADYADYVYLLEKGHIISCGTP--SDVFQEVDFLKAHELGVPK 247
|
Length = 288 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 64/284 (22%), Positives = 117/284 (41%), Gaps = 67/284 (23%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+ILK V+ VK + ++GP G+GK+TL + G H V
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEV----------------- 58
Query: 245 ASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
G+I + G ++ E P +R A I + + ++ GV L A +
Sbjct: 59 TEGEILFDGEDILELSPDERARAGIF--------LAFQYPVEIP----GVTNSDFLRAAM 106
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
+ R +GI PE +K A +LLGLD + + + G SG
Sbjct: 107 NARRGARGI--LPEFIKELKEKA--------------ELLGLD---EEFLERYVNEGFSG 147
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM----VHIMDVT---MIV 416
G+KKR ++L+ K+ ++DE +GLD + + + + ++ +T ++
Sbjct: 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL 207
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKC 460
++P D + ++ +G+IV G + + E E+ G+
Sbjct: 208 DYIKP--------DKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 70/277 (25%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
RD L +S +++P L+G G+GK+TL+ NL RF
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLV---------NLIPRF------------ 381
Query: 242 TEQASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
E SG+I GH+L ++ R A +SQ D+ T+ + Y
Sbjct: 382 YEPDSGQILLDGHDLADYTLASLRRQVALVSQ-DVVLFNDTIANNI-----------AYG 429
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
+ R E ++ A V L + DT +G+
Sbjct: 430 RTEQADRAE--------------IERALAAAYAQDFVD-------KLPLGLDTPIGENGV 468
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD--VTMIV 416
+SGGQ++R+ L+ A +L++DE ++ LD+ + + L+ +M T+++
Sbjct: 469 L-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE---RLMQGRTTLVI 524
Query: 417 A--LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
A L T + D I+++ +G+IV G + +L
Sbjct: 525 AHRL-----STIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 38/212 (17%)
Query: 916 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVT 974
L+G SG GKTTL+ +LAG + G I + G R Q+ PH+T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL------KPLRDALVGLPGVNGLSTE 1028
+ E++ + +R V + K V E + LV+L KP + LS
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQ-----------LSGG 104
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1087
Q++R+ +A LV P I+ +DEP S LD + + ++ + G T V H D
Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----D 160
Query: 1088 IFEAF---DELLLMKRG-------GRVIYAGP 1109
EA D + +M++G IY P
Sbjct: 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 37/218 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L ++ G L ++G SG GKTTL++++AG Y G I + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLP 1020
G Q + P + +++ + L+L+ V+ +R +++ VGL
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQML----------KKVGLE 119
Query: 1021 GVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV-- 1071
G LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQ 176
Query: 1072 DTGRTVVCTIHQPSIDIFEAF---DELLLMKRG-GRVI 1105
+TG+ V+ H DI EA EL+L+ G GRV+
Sbjct: 177 ETGKQVLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 66/290 (22%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
Q+L D+S + +M LLGP G+GKTTL+ +AG H+
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-------------------- 55
Query: 245 ASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
SG I + G +++ R ++ QH MTV + + F L L
Sbjct: 56 -SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVL 102
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
RRE+ P A V T L L++ + D +SG
Sbjct: 103 PRRER-------PNAAAIKAKV------TQL----------LEMVQLAHLADRYPAQLSG 139
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
GQK+RV L ++LL+DE LD+ ++ ++L+Q+ + T V +
Sbjct: 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQE 198
Query: 424 ETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEV 473
E ++ D ++++S+G I G D V ++ P + V +F+ EV
Sbjct: 199 EAMEVADRVVVMSQGNIEQAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 35/177 (19%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-------KK 952
+LH+VS + G + A++G SG+GK+TL+ +L G T GD+ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 953 QETFARVSGYCEQTDIHSPHVTLYES----LLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
E + G+ Q P T E+ LL + KK +E++
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLL----------IGKKKPAEINSRALEML- 130
Query: 1009 LKPLRDALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060
A VGL + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ------AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYIEGDIKISGYPKK 952
+L V +PG + G +G+GK++L +D+ G+ I+G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
+R+S + L + +L+S +R + D + K + E +E+ +LK +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 1013 RDALVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
+L G G++ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHK 1116
+ V T RTVV H+ S I +A D +L++ RG V P + +
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +TV H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1084 PSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ E DE+++M +G + P
Sbjct: 236 ME-HVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 950
R +L +VS + G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 951 KKQETFARVSGYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
K++ F R Q + P +T+ + + LR + +D ++K + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 1009 LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
L+ + LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 139 LRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGYPKK-QE 954
A G + +MG+SG+GK+T + +L AG+ +I+G+ + P + +E
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVELRE 67
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
+ G Q PH+T+ ++ L ++RK ++ +EL++L
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPEL---LGWPEQERK---EKALELLKL----- 116
Query: 1015 ALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
VGL + LS ++R+ +A L A P I+ MDE S LD + ++
Sbjct: 117 --VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK 174
Query: 1070 TVDT-GRTVVCTIHQPSIDIFEAF---DELLLMKRG 1101
T +T+V H D+ EA D +++MK G
Sbjct: 175 LQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+S GQKKRV +LV KVL++DE + GLD +I K L +M + +T+I+A
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA--- 198
Query: 421 PAPETYDL------FDDIILISEGQIVYHG 444
T+D+ D++ ++ EG+++ G
Sbjct: 199 ----THDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 65/266 (24%), Positives = 105/266 (39%), Gaps = 74/266 (27%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+V L D++ + +LLGP G GKTT + +AG +
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG----------------LEEP--- 52
Query: 243 EQASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
SG+I G ++ + P R A + Q+ + MTV + + F
Sbjct: 53 --TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFG-------------- 96
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
L R P EID ++ VA +LL ++ + D + +
Sbjct: 97 -LKLR-----KVPKDEIDERVREVA--------------ELLQIE-----HLLDRKPKQL 131
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++RV G +V KV LMDE + LD+ Q+ LK++ + T I
Sbjct: 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV---- 187
Query: 422 APETYD------LFDDIILISEGQIV 441
T+D + D I ++++GQI
Sbjct: 188 ---THDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 47/222 (21%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
+L +VS + G ++G +GAGK+TL +LA + EG I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG---------- 69
Query: 959 VSGYCEQTDI-HSPHVTLYESL--------LYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
DI P L SL L+S +R + D + +E+ + +
Sbjct: 70 -------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRV 119
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 120 SE---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
Query: 1070 TVDTGRTVVCTIH--QPSIDIFEAFDELLLMKRGGRVIYAGP 1109
T T++ H + ID +D++L+M G Y P
Sbjct: 171 EF-TNSTILTIAHRLRTIID----YDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 37/210 (17%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY 949
GE+++++L +S G + A++G SG+GK+TLM++L G ++ G +++G
Sbjct: 17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTYRVAGQ 70
Query: 950 PKKQ---ETFARVS----GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
+ A++ G+ Q H+T +++ A + + ++ K+R + E
Sbjct: 71 DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQE 127
Query: 1003 VM------ELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
++ + VE +P + LS Q++R++IA L+ +I DEPT LD
Sbjct: 128 LLQRLGLEDRVEYQP-----------SQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
+ + VM + D G TV+ H P +
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 58/274 (21%), Positives = 109/274 (39%), Gaps = 73/274 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
IL D+S + ++T L+GP G GK+TL+ A R+
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-------------------RLLT--PQ 55
Query: 246 SGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG + ++ + R A + QH L +TVRE + + GR L
Sbjct: 56 SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY-GR----SPWLSLWGR 110
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
LS + + V A ++T ++ AD + D +S
Sbjct: 111 LSAEDNAR--------------VNQAMEQT-----------RINHLADRRLTD-----LS 140
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQ++R +L V+L+DE +T LD + ++ + ++++ + T++ L
Sbjct: 141 GGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVL---- 195
Query: 423 PETYDL------FDDIILISEGQIVYHGPRDNVL 450
+DL D +++++ G ++ G + V+
Sbjct: 196 ---HDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 65/268 (24%), Positives = 95/268 (35%), Gaps = 67/268 (25%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSN---KFLIIRIWKT 242
IL D+S V P ++GP GAGKTTL+ L G+ S+ L R K
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-------PSSGDVTLLGRRFGKG 98
Query: 243 EQAS---GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
E +I EL+E R TVR+ + SG Y+
Sbjct: 99 ETIFELRKRIGLVSSELHERFRVRE--------------TVRDVV-LSGF-FASIGIYQE 142
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
Q + L+LLG AD G
Sbjct: 143 DLTAEDLAAAQWL---------------------------LELLGAKHLADRPFGS---- 171
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
+S G+++RV LV ++L++DE + GLD + L ++ + ALL
Sbjct: 172 -LSQGEQRRVLIARALVKDPELLILDEPAQGLD---LIAREQLLNRLEELAASPGAPALL 227
Query: 420 ---QPAPETYDLFDDIILISEGQIVYHG 444
A E F +L+ EG++V G
Sbjct: 228 FVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFA 957
L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
R Y Q +P W L+ K R +++V + L D L
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALD---DKLG 120
Query: 1018 GLPGVNGLSTE--QRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNT 1070
N LS QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 121 RS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G +V + H + + A L+KR G+++ +G
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHA-HRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 36/215 (16%)
Query: 884 MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--Y 939
M E+K G ++L+++S + R G A+ G SG GK+TL+ ++A T G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 940 IEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIF 999
EG+ +S K E + + YC QT T+ ++L++ +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAA 113
Query: 1000 VDEVMELVELKPLRDALVGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053
+D + A LP + LS +++R+ + L P I+ +DE TS
Sbjct: 114 LDLL-----------ARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162
Query: 1054 GLDARAA----AIVMRTVRNTVDTGRTVVCTIHQP 1084
LD ++ R VR + V+ H
Sbjct: 163 ALDESNKRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 38/225 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQ--- 953
++ VS R G + +MG+SG+GK+TL+ + T G I+G I+ +K+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKELRE 98
Query: 954 ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
+ + V Q+ PH T+ E++ + ++ V +R+ E +ELV L+
Sbjct: 99 LRRKKISMVF----QSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLE 151
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRT 1066
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 152 GWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRL 206
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAG 1108
+T+V H D+ EA D + +MK GR++ G
Sbjct: 207 QAE---LQKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 38/253 (15%)
Query: 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDV 930
+S+ F ++Y M+ +G L ++S G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 931 LAGRKTGGYIEGDIKISGYPKKQET-------FARVSGYCEQTDIHSPHVTLYESLLYSA 983
G I I+GY ET + Q P L+E+ +
Sbjct: 53 FNALLKPS--SGTITIAGYHITPETGNKNLKKLRKKVSLVFQF----PEAQLFENTVLK- 105
Query: 984 WLRLSSDVDTKKRKI-FVDEVMELVELKPLRDALVGLP------GVNGLSTEQRKRLTIA 1036
DV+ + F ++ + LK L+ VGL LS Q +R+ IA
Sbjct: 106 ------DVEFGPKNFGFSEDEAKEKALKWLKK--VGLSEDLISKSPFELSGGQMRRVAIA 157
Query: 1037 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1096
+ P I+ +DEP +GLD +M+ ++ G TV+ H D+ E D++L
Sbjct: 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVL 216
Query: 1097 LMKRGGRVIYAGP 1109
+++ G + +A P
Sbjct: 217 VLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQE 954
+L + + G + ++G SG+GK+TL+ + G I +K++ K
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNIN 72
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYS-AWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ G Q PH+T+ E++ + ++ S + ++R +EL+E
Sbjct: 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER------ALELLEK---- 122
Query: 1014 DALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 1069 NTVDTGRTVVCTIHQ 1083
+ + G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 56/230 (24%)
Query: 891 EGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISG 948
+ ++ L ++ G L A++G G+GK++L+ L G K G + + G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG 66
Query: 949 YPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR---------LSSDVDTKKRKIF 999
+ A Y Q W++ D ++R
Sbjct: 67 ------SIA----YVSQE----------------PWIQNGTIRENILFGKPFD-EER--- 96
Query: 1000 VDEVMELVELKPLRDAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052
++V++ L+P + L +G G+N LS Q++R+++A + ++ I +D+P
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPL 155
Query: 1053 SGLDAR-AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
S +DA I + + +T + HQ + + D+++++ G
Sbjct: 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-08
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 26/215 (12%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISG 948
R +L+ +S G A++G SGAGK+T++ DV +G T I+G DI+
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDV- 330
Query: 949 YPKKQETFARVSGYCEQTDIHSPHVTLYESLLYS-AWLRLSSDVDTKKRKIFVDEVMELV 1007
Q++ R G Q V +++ Y+ + R + + ++ + +
Sbjct: 331 ---TQQSLRRAIGIVPQD-----TVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 1008 ELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+ P D VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 383 QSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+R V GRT + H+ S I +A DE++++ G
Sbjct: 442 LRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+E VE+ R + LP S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1064 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYAG 1108
+ +R V + G VV H D+ A LL+MK+ GRV+ +G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQ-GRVVESG 234
|
Length = 258 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 44/189 (23%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 948
Q L +S +TA +G SG GK+TL+ D++ + IEG+I++ G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNI 94
Query: 949 YPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVME 1005
Y KK E RV G Q P ++YE+++Y LRL R++ +DE +E
Sbjct: 95 YDKKVDVAELRRRV-GMVFQRPNPFPK-SIYENVVYG--LRLQG---INNRRV-LDEAVE 146
Query: 1006 LVELKPLRDALV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054
+ LR A + GLS Q++RL IA + P ++ +DEPTS
Sbjct: 147 ----RSLRGAALWDEVKDRLHENAF----GLSGGQQQRLVIARAIAIEPEVLLLDEPTSA 198
Query: 1055 LDARAAAIV 1063
LD + +
Sbjct: 199 LDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+E VE+ R + LP S ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 135 LEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190
Query: 1064 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ +R V + G VV H ++ A D L++MK+ G+V+ +G
Sbjct: 191 LDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 60/190 (31%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 951
Q L ++ +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 952 KQETFARVSGYCEQTDI-----------HSPH---VTLYESLLYSAWLRLSSDVDTKKRK 997
Y D+ P+ +++Y+++ Y R D KK
Sbjct: 70 -------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP--RTHGIKDKKK-- 118
Query: 998 IFVDEVMELVELKPLRDALV-----------GLPGVNGLSTEQRKRLTIAVELVANPSII 1046
+DE++E K L+ A + L GLS Q++RL IA L P ++
Sbjct: 119 --LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVL 168
Query: 1047 FMDEPTSGLD 1056
MDEPTS LD
Sbjct: 169 LMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 8e-08
Identities = 51/260 (19%), Positives = 98/260 (37%), Gaps = 59/260 (22%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+L D+S ++ + L+G G GKTTL+ A+AG + K
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-------------------KAAGL 60
Query: 246 SGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
+G+I +L P +R A + Q+ + V + + F G+ + A+++
Sbjct: 61 TGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIA 115
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
R V D LKL+GL + +SGG
Sbjct: 116 ER----------------------------VAD-ALKLVGL-----GDAAAHLPAQLSGG 141
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424
++R+ + VLL+DE + LD++ + + + + + I+ + +
Sbjct: 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201
Query: 425 TYDLFDDIILISEGQIVYHG 444
L D ++ +G++ HG
Sbjct: 202 ALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 8e-08
Identities = 66/293 (22%), Positives = 107/293 (36%), Gaps = 106/293 (36%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+L DVS ++P + +LGP GAGK+TL+ AL+G+L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--------------------- 54
Query: 245 ASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFS---------GRCLG 292
SG++ G L ++ P R A + QH +L F GR
Sbjct: 55 DSGEVRLNGRPLADWSPAELARRRAVLPQH----------SSLSFPFTVEEVVAMGR--- 101
Query: 293 VGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352
A + D + A + V +A DY
Sbjct: 102 --------APHGLSRAED----DALVAAALAQVDLAHLAGR---DY-------------- 132
Query: 353 VGDEMRRGISGGQKKRVTTGEMLV------GAAKVLLMDEISTGLDSS---TTFQICKFL 403
+SGG+++RV +L G + LL+DE ++ LD + ++
Sbjct: 133 ------PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL---A 183
Query: 404 KQMVHIMDVTMIVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVL 450
+Q+ H + +IV L +DL D I+L+ +G++V G VL
Sbjct: 184 RQLAHERGLAVIVVL-------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 20/188 (10%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYIEGDIKISGY--PKKQETFARVS 960
R G + L+G +G GK+T + +LAG+ K + D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 961 GYCEQTD-IHSPHVTLYESLLYSAWLRLSSDVDTKKRKI-FVDEVMELVELKPLRDALVG 1018
I P Y L+ A ++ KK + +DE+++ +EL+ + D
Sbjct: 84 E--GDVKVIVKPQ---YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR--- 135
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
++ LS + +R+ IA L + F DEP+S LD + R +R + V+
Sbjct: 136 --NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVL 193
Query: 1079 CTIHQPSI 1086
H ++
Sbjct: 194 VVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR--VSGYCE 964
F G +TA++G SG+GK+TL++++AG +T G + I+G A VS +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 965 QTDIHSPHVTLYES--LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
+ ++ H+T+ ++ L S L+L++ D + ++ + V L L LPG
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTA-EDRQA----IEVALARVGLAGL---EKRLPGE 128
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVC 1079
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 --LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLM 184
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
HQP D ++ + GR+ G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-08
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 40/226 (17%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKKQ---- 953
++ S G + +MG+SG+GK+TL+ +L T G I D K I+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 954 --ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ + V Q+ PH T+ E++ + L + V +R+ E +ELV L+
Sbjct: 104 RRKKISMVF----QSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEG 156
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT----- 1066
D N LS ++R+ +A L +P I+ MDE S LD ++RT
Sbjct: 157 YADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDE 206
Query: 1067 -VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAG 1108
+ +T+V H D+ EA D + +MK G ++ G
Sbjct: 207 LLELQAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 50/212 (23%), Positives = 76/212 (35%), Gaps = 59/212 (27%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L+ VS V P L+GP GAGK+TL+ L G + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---------------------DPTE 376
Query: 247 GKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
G I G L + + A++ QH T+ E + AE+
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEI 428
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
++ G + VA Q GL DT +G+ G+SG
Sbjct: 429 REALERAG---------LDEFVAALPQ-------------GL----DTPIGEG-GAGLSG 461
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
GQ +R+ + A +LL+DE + LD+ T
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 55/286 (19%), Positives = 104/286 (36%), Gaps = 93/286 (32%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D LKD+S + +T L+GP G GK+TL+ L + +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR----------------LNDLIPG 55
Query: 243 EQASGKITYCGHELNE-------------FVPQRTCAYISQHDLHHGEMTVRETLDFSGR 289
G++ G ++ + V Q+ + ++ + +
Sbjct: 56 APDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF---------PGSIYDNVA---- 102
Query: 290 CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICA 349
G+ + GIK E+D V A L+ L
Sbjct: 103 -YGL--------------RLHGIKLKEELDE---RVEEA-----------LRKAALW--- 130
Query: 350 DTMVGDEMRR-----GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK 404
DE++ G+SGGQ++R+ L +VLL+DE ++ LD +T +I + +
Sbjct: 131 -----DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA 185
Query: 405 QMVHIMDVTMIVA---LLQPAPETYDLFDDIILISEGQIVYHGPRD 447
++ + T+++ + Q A + D + G++V GP +
Sbjct: 186 ELKK--EYTIVIVTHNMQQAA----RVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 57/271 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D IL V V + +LG G+GK+TL+ + G L R + LI
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL------RPDKGEILIDGE-DI 72
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
Q S + EL E ++ + Q +TV E + F L E
Sbjct: 73 PQLSEE------ELYEI--RKRMGVLFQQGALFSSLTVFENVAF------------PLRE 112
Query: 303 LSRREKQQGIKPDPEID--AFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
++ P+ I MK L+L+GL D
Sbjct: 113 HTK-------LPESLIRELVLMK----------------LELVGLR----GAAADLYPSE 145
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGG +KRV + ++L +DE ++GLD + I + ++++ + +T+I+
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ D + ++++G+++ G + +L
Sbjct: 206 -LDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 41/229 (17%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
++L +S + G + ++G SG+GK+TL+ L G G I D + G K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 956 FARVSGYCEQTDIHS----PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV----MELV 1007
R G Q PH+T+ E++ + K +K+ E +EL+
Sbjct: 75 LRRKVGMVFQ----QFNLFPHLTVLENVTLAP---------VKVKKLSKAEAREKALELL 121
Query: 1008 ELKPLRDALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
E VGL LS Q++R+ IA L +P ++ DEPTS LD
Sbjct: 122 EK-------VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE 174
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIF--EAFDELLLMKRGGRVIYAGP 1109
V+ +++ + G T++ H+ F E D ++ M G++I GP
Sbjct: 175 VLDVMKDLAEEGMTMIIVTHEMG---FAREVADRVIFM-DQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 950
+L++VS + + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 951 KKQETFARVSGYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
+++ F R Q I + P T+ E + LR +D +R E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 1009 LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
L L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 18/152 (11%)
Query: 918 GVSGAGKTTLMDVLAGRK--TGG--YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV 973
G SG GK+TL+ ++AG + T G +I G+ +++ P + R G Q+ PH+
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPHL 90
Query: 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL 1033
++ E++ S L+L+ ++ V++V E+++L L D P LS QR+R+
Sbjct: 91 SVAENM--SFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDRK---P--KALSGGQRQRV 142
Query: 1034 TIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 33/240 (13%)
Query: 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------IEGDIKI 946
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG + GD+ +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 947 SGYPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAW--LRLSSDVDTKKRKIFVD 1001
+G P AR+ Q + + E +L + R + + + +I
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 1002 EVMELVELKPL--RDALVGLPGVNGLSTEQRKRLTIAVEL---------VANPSIIFMDE 1050
+ + L L RD V LS + R+ A L P + +DE
Sbjct: 128 QALALAGATALVGRD-------VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 1051 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
PT+ LD ++ TVR V I H P++ A + + M G ++ G
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA--DRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 58/282 (20%), Positives = 116/282 (41%), Gaps = 79/282 (28%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
+L+D+S + L+GP G+GK+TL+ NL RF
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV---------NLIPRFY---------- 52
Query: 241 KTEQASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
+ SG+I GH++ ++ R +SQ D+ TV E + +
Sbjct: 53 --DVDSGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYG---------- 99
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDE 356
+P + +A + +++++L G D T++G+
Sbjct: 100 ---------------RPGATREEVEEAA-----RAANAHEFIMELPEGYD----TVIGE- 134
Query: 357 MRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
RG+ SGGQ++R+ L+ +L++DE ++ LD+ + + L++++ + T
Sbjct: 135 --RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTT 190
Query: 415 IV-----ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
V + ++ A D I+++ +G+IV G + +L
Sbjct: 191 FVIAHRLSTIENA-------DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 58/287 (20%), Positives = 93/287 (32%), Gaps = 78/287 (27%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
K L +VS ++ ++G G+GK+TL LAG
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--------------- 58
Query: 238 RIWKTEQASGKITYCGHELNEFVPQRTCA----YISQHDLH--HGEMTVRETLDFSGRCL 291
+SG I G L + + Q + TV L
Sbjct: 59 ------PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS------ 106
Query: 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
E L + QQ I + V + S + +L
Sbjct: 107 ------EPLRPHGLSKSQQ------RIAELLDQVGL---PPSFLDRRPHEL--------- 142
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411
SGGQ++R+ L+ K+L++DE ++ LD S QI L ++
Sbjct: 143 ----------SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192
Query: 412 VTMIV-----ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFF 453
+T + AL+ + D I ++ GQIV GP + +L
Sbjct: 193 LTYLFISHDLALV------EHMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 26/207 (12%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE 954
ED+ ++L V+ + G + A+MG +G+GK+TL +AG + G I G Q+
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 955 TF-------ARVSGYCE-QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
AR + Q P V+ E +LR + + R ++++
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLE------FLRSALNARRSARGEEPLDLLDF 119
Query: 1007 VELKPLRDALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
++L + AL+G+ VN G S ++KR I + P + +DE SGLD A
Sbjct: 120 LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 91/265 (34%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
LKD++ V + ++GP G+GK++L+ AL G+L +
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL--------------------- 58
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
SG ++ G + AY+SQ + +G T+RE + F G +
Sbjct: 59 SGSVSVPG----------SIAYVSQEPWIQNG--TIRENILF-------GKPF------- 92
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD---TMVGDEMRRGI 361
D E + V A +L D L+I D T +G+ +GI
Sbjct: 93 ----------DEE---RYEKVIKA---CALEPD-------LEILPDGDLTEIGE---KGI 126
Query: 362 --SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT---FQ--ICKFLKQMVHIMDVTM 414
SGGQK+R++ + A + L+D+ + +D+ F+ I L + VT
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186
Query: 415 IVALLQPAPETYDLFDDIILISEGQ 439
+ LL A D I+++ G+
Sbjct: 187 QLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDI 1088
++RL IA LV P ++FMDEPT GLD A ++ +R V D G V+ H +
Sbjct: 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
Query: 1089 FEAFDELLLMKRGGRVIYAG 1108
A LL+M++ GRV+ +G
Sbjct: 214 LLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 22/196 (11%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------YPK 951
Q L ++ G L+G SGAGK++L+ VL + G + I+G P
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPS 73
Query: 952 KQETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLS--SDVDTKKRKIFVDEVMELV 1007
+ R G Q PH+T+ E+L+ A R+ S R ++++ +
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAE---KLLKRL 129
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
LKP D P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +
Sbjct: 130 RLKPYADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1068 RNTVDTGRTVVCTIHQ 1083
+ +TG T V H+
Sbjct: 185 KELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 72/219 (32%)
Query: 882 VDMPAEMKTEGV----GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-- 935
+ P +M+ G+ G+ Q LH +S F +TAL+G SG GK+T + L
Sbjct: 1 MASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL 58
Query: 936 -TGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV--------------------- 973
G +EG+I + G +I+ PHV
Sbjct: 59 IPGARVEGEILLDG-----------------ENIYDPHVDVVELRRRVGMVFQKPNPFPK 101
Query: 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV-----------GLPGV 1022
+++E++ Y LR V+ K K ++ E +E + LR A + L
Sbjct: 102 SIFENVAYG--LR----VNGVKDKAYLAERVE----RSLRHAALWDEVKDRLHESAL--- 148
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 149 -GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 22/176 (12%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 948
+ L +++ +TAL+G SG GK+TL+ D++ G + IEG + G
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDI 70
Query: 949 YPKKQETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
Y KK + R G Q P +++Y+++ Y RL D K+ V+E ++
Sbjct: 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKK 127
Query: 1007 VEL-KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
L ++D L GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 128 AALWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKK--Q 953
+L VS PG +TAL+G SG+GK+T++ +L + GG + D K IS Y K
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ V E +L++ L+ ++ + + V E +
Sbjct: 88 SKVSLVG---------------QEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 1014 DALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
+ L G G LS Q++R+ IA L+ NP ++ +DE TS LDA + V
Sbjct: 131 SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
+ + + RTV+ H+ + E D++L++ GGR+
Sbjct: 191 QALYDW-PERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 25/221 (11%)
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKKQETFA 957
+VS + G + ++G SGAGKTTL ++AG T G + GD + +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 958 RVSGYC----EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
R Y ++ D++ PH T+ ++L + L L ++ + + + +++ E K
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL-ARMKAVITLKMVGFDEEKA-E 418
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-- 1071
+ L P + LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 1072 ---DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ +T + H + + D LM R G+++ G
Sbjct: 473 AREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
L +VS +K + L+GP G+GK+TL+ A+AG L
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL--------------------- 49
Query: 243 EQASGKITYCGHELNEFVPQ---RTCAYISQ 270
+ SG+I G ++ + + R Y+ Q
Sbjct: 50 KPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 3e-07
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 28/111 (25%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
R +LKDVS +KP ++GP G+GK+TL+ L
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-------------------- 52
Query: 242 TEQASGKITYCGHELNEFVPQ---RTCAYISQHD-LHHGEMTVRETLDFSG 288
+ SG+I G +L + + + AY+ Q L G T+RE + SG
Sbjct: 53 -DPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG--TIRENI-LSG 99
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 59/277 (21%), Positives = 95/277 (34%), Gaps = 82/277 (29%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+LK V V+ + ++GP G+GK+TL+ + G L
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL---------------------RP 52
Query: 245 ASGKITYCGHELNEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
SG++ G +++ R + Q +TV E + F
Sbjct: 53 DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF------------ 100
Query: 299 LLAELSRREKQQGIKPDPEID--AFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356
L E +R + EI K L+ +GL D +
Sbjct: 101 PLREHTRL-------SEEEIREIVLEK----------------LEAVGLRGAEDLYPAE- 136
Query: 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI------CKFLKQMVHIM 410
+SGG KKRV L ++LL DE + GLD + I K + IM
Sbjct: 137 ----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIM 192
Query: 411 DVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRD 447
VT + + + D I ++ +G+IV G +
Sbjct: 193 -VTHDL------DTAFAIADRIAVLYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 3e-07
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 31/196 (15%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEG--DIKISGYP 950
DRL + F +TA +G +GAGKTT + +L G +G + G DI+ +
Sbjct: 947 DRLNI------TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 951 KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
+Q G C Q +I H+T+ E +L+ A L+ S ++ ++ ++ ++E L
Sbjct: 1001 VRQSL-----GMCPQHNILFHHLTVAEHILFYAQLKGRS---WEEAQLEMEAMLEDTGLH 1052
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTV 1067
R+ LS +++L++A+ V + ++ +DEPTSG+D R+ ++
Sbjct: 1053 HKRNE-----EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107
Query: 1068 RNTVDTGRTVVCTIHQ 1083
R +GRT++ + H
Sbjct: 1108 R----SGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 948
L +S + A +G SG GK+T + D++ + +EG+I+I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 949 -YPKKQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVME 1005
Y K + + G Q P +++E++ Y LR++ D + V+E ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 1006 LVEL-KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
L ++D L LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 129 GAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 915 ALMGVSGAGKTTLMDVL--------AGRKTGG---YIEGDI-KISGYPKKQETFARVSGY 962
+MG SG+GK+TL+ VL + K G Y DI +I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-KPLRDALVGLPG 1021
Q PH+++Y+++ Y L+ + ++ K V+E + V L K + D L P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPA 151
Query: 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1081
+ LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V
Sbjct: 152 -SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVS 209
Query: 1082 HQP 1084
H P
Sbjct: 210 HNP 212
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQ 1083
LS Q++R+ IA L P II +DE TS LD R V+ TVR + TV+ H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH- 199
Query: 1084 PSIDIFEAF--DELLLMKRGGRVIYAGP---LGRESHKLIEYFEAVPGVPKIKDA 1133
D+ EA D +++M G ++ G + + H L E VP K+K+
Sbjct: 200 ---DLDEAAQADRVIVM-NKGEILEEGTPEEIFKSGHMLQEIGLDVPFSVKLKEL 250
|
Length = 279 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 39/226 (17%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYIEGD-IKISGYPKK--- 952
Q + VS +PG A++G +GAGK+TL+++L G I D I +
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408
Query: 953 -------QET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV 1003
Q+ F R + + P T E + +A R +
Sbjct: 409 RNIAVVFQDAGLFNRSIE--DNIRVGRPDATDEE--MRAAAERA--------------QA 450
Query: 1004 MELVELKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ +E KP D +VG G LS +R+RL IA L+ +P I+ +DE TS LD A
Sbjct: 451 HDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V + + + GRT H+ S + A D +L+ GRV+ +G
Sbjct: 510 VKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 65/274 (23%), Positives = 102/274 (37%), Gaps = 73/274 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
I+ V P +T LLGP G+GK+TL+ LAG L
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL---------------------RPD 54
Query: 246 SGKITYCG---HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+G + G H L+ R A + Q +TVR+ + L
Sbjct: 55 AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV--------------ALGR 100
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+ R G D DA + A+A E S + D + L S
Sbjct: 101 IPHRSLWAG---DSPHDAAVVDRALARTELSHLADRDMSTL------------------S 139
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GG+++RV L K+LL+DE + LD + ++++ VT++ AL
Sbjct: 140 GGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAAL---- 194
Query: 423 PETYDL------FDDIILISEGQIVYHGPRDNVL 450
+DL D ++++ G++V GP VL
Sbjct: 195 ---HDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 43/209 (20%), Positives = 66/209 (31%), Gaps = 65/209 (31%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+ D+S + + GP GAGKTTL+ LAG L
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---------------------PD 55
Query: 246 SGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
+G++ + G + + Y+ E+T E L F R G G
Sbjct: 56 AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG--------- 106
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
I + V +AG E D +S
Sbjct: 107 ----------NAATIWEALAQVGLAGLE-----------------------DLPVGQLSA 133
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
GQ++RV + + A + ++DE T LD
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 61/251 (24%)
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
LLGP GAGKTTL+ A+ G LI T + +G G +VP
Sbjct: 11 LLGPNGAGKTTLLRAILG---------------LIPPAKGTVKVAGASPGKGWRHIGYVP 55
Query: 262 QRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDA 320
QR H+ ++V T+ SGR +G RR P +
Sbjct: 56 QR-------HEFAWDFPISVAHTV-MSGRTGHIG--------WLRR---------PCVAD 90
Query: 321 FMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK 380
F AV A L+ +GL AD VG+ +SGGQ++RV L
Sbjct: 91 F-AAVRDA-----------LRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPS 133
Query: 381 VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQI 440
VLL+DE TGLD T + + ++ T I+ + D ++L++ G++
Sbjct: 134 VLLLDEPFTGLDMPTQELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLLN-GRV 190
Query: 441 VYHGPRDNVLE 451
+ G + +
Sbjct: 191 IADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYP 950
L+ ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 951 KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL- 1009
R G Q P ++YE++ Y R+ + + K V++ ++ L
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
++D L LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 137 DEVKDRL--HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA- 957
++L V+ +TALMG SG+GK+TL+ V R Y E + Y Q+ F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 958 ------RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKR-KIFVDEVMELVEL- 1009
R Q P+++++E++ L+L+ V +KK + V +E +L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
++D L G LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 134 DEVKDRLDAPAG--KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 40/194 (20%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI 968
RPG + ++G +G GK+T + +LAG + P E R G T++
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRG----TEL 149
Query: 969 HSPHVTLYESLLYSAWLR----------LSSDVDTKKRKI--------FVDEVMELVELK 1010
+ Y LY LR + V K ++ DEV+E + L+
Sbjct: 150 QN-----YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE 204
Query: 1011 PL--RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
+ RD V+ LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 205 NVLDRD-------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIR 257
Query: 1069 NTVDTGRTVVCTIH 1082
+ G+ V+ H
Sbjct: 258 ELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 61/221 (27%), Positives = 83/221 (37%), Gaps = 72/221 (32%)
Query: 180 KKR--DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
+KR D ++ +S V+ LLGP GAGKTT + L G
Sbjct: 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL----------------- 56
Query: 238 RIWKTEQASGKITYCGHELNEFVPQRT------CAYISQHDLHHGEMTVRETLDFSGRCL 291
T +G I+ CG E VP R + Q D + TVRE L GR
Sbjct: 57 ----THPDAGSISLCG----EPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF 108
Query: 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
G LS + + P +L+ L+ AD
Sbjct: 109 G----------LSAAAARALVPP------------------------LLEFAKLENKADA 134
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
VG+ +SGG K+R+T LV VL++DE +TGLD
Sbjct: 135 KVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 5e-07
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 68/248 (27%)
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
L+GP GAGKT+L+ AL G FL + G + G EL E P
Sbjct: 381 LVGPSGAGKTSLLNALLG--------------FLPYQ--------GSLKINGIELRELDP 418
Query: 262 Q---RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPE 317
+ + +++ Q+ L HG T+R+ + LL PD
Sbjct: 419 ESWRKHLSWVGQNPQLPHG--TLRDNV--------------LLG-----------NPDAS 451
Query: 318 IDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 376
+ +A+ A V++++ L GL DT +GD+ G+S GQ +R+ L+
Sbjct: 452 DEQLQQALENAW-----VSEFLPLLPQGL----DTPIGDQA-AGLSVGQAQRLALARALL 501
Query: 377 GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILIS 436
++LL+DE + LD+ + + + L M+ L+ + +D I ++
Sbjct: 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQ 557
Query: 437 EGQIVYHG 444
+GQIV G
Sbjct: 558 DGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 64/207 (30%), Positives = 88/207 (42%), Gaps = 47/207 (22%)
Query: 884 MPAEMKTEGV----GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLA 932
+M+ V GE Q L V +TA +G SG GK+T + D +
Sbjct: 16 TEIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTID 73
Query: 933 GRKTGGYIEGDIKISG---YPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986
G + + G I + G Y + E ARV G Q P ++YE++ Y R
Sbjct: 74 GCR----VTGKITLDGEDIYDPRLDVVELRARV-GMVFQKPNPFPK-SIYENVAYGP--R 125
Query: 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGL----------PGVNGLSTEQRKRLTIA 1036
+ +K E+ E+VE LR A GL PG GLS Q++RL IA
Sbjct: 126 IHGLARSK------AELDEIVE-TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIA 175
Query: 1037 VELVANPSIIFMDEPTSGLDARAAAIV 1063
+ +P +I MDEP S LD A A V
Sbjct: 176 RAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 59/273 (21%), Positives = 110/273 (40%), Gaps = 65/273 (23%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+LKD+S ++P ++GP G+GK+TL+ L
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY--------------------- 379
Query: 243 EQASGKITYCGHELNE---FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
+ SG+I G ++ + ++ +SQ D T+RE +
Sbjct: 380 DPTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTIRENIALG------------ 426
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL-GLDICADTMVGDEMR 358
+PD + +A+ +A +++ L G D T+VG E
Sbjct: 427 -------------RPDATDEEIEEALKLAN-----AHEFIANLPDGYD----TIVG-ERG 463
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+SGGQ++R+ L+ +L++DE ++ LD+ T I LK+++ T ++
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIA 521
Query: 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ + T D II++ G+IV G + +L
Sbjct: 522 HRLS--TIKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 52/208 (25%), Positives = 76/208 (36%), Gaps = 41/208 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+L++VS + P L+G GAGK+TL+ LAG+L +
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--------------------- 56
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
SG++T Y+SQ E TV + + G G ELLAEL
Sbjct: 57 SGEVTRPKGL--------RVGYLSQEPPLDPEKTVLDYV-----IEGFGELRELLAELEE 103
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETS-LVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
D + + T + L LG D V +SGG
Sbjct: 104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGG 157
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLD 392
++RV L+ +LL+DE + LD
Sbjct: 158 WRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 35/166 (21%)
Query: 913 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKKQETFARVS-G 961
+TAL+G SG GK+TL+ D++ G K I G + + G Y R+ G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 962 YCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV---- 1017
Q P +++YE++ Y LR D K +DEV+E + LR A +
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKV----LDEVVE----RSLRGAALWDEV 135
Query: 1018 ----GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 136 KDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 48/209 (22%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953
E Q+L ++S + G AL+G SG+GK+TL+ + GD+K
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL---------QLLTGDLKPQ------ 55
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
G + + V+ E L S V ++ +F + +
Sbjct: 56 ------QG---EITLDGVPVSDLEKALSSLI-----SVLNQRPYLFDTTLRNNL------ 95
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 96 ----GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLK 146
Query: 1074 GRTVV-CTIHQPSIDIFEAFDELLLMKRG 1101
+T++ T H I E D++L ++ G
Sbjct: 147 DKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 7e-07
Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 66/277 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
IL D+S +K + T ++G G+GK+TL L V F +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLA---------KLLVGF------------FQAR 527
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
SG+I G L + I +H L +E FSG L LL
Sbjct: 528 SGEILLNGFSLKD---------IDRHTLRQFINYLPQEPYIFSGSILE-----NLLL--- 570
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
G K + D A +A + D LG T + +E ISGG
Sbjct: 571 ------GAKENVSQDEIWAACEIA----EIKDDIENMPLGYQ----TELSEE-GSSISGG 615
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI-VA-LLQPA 422
QK+R+ L+ +KVL++DE ++ LD+ T +I + ++++ D T+I VA L A
Sbjct: 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKI---VNNLLNLQDKTIIFVAHRLSVA 672
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQM 456
++ D II++ G+I+ G D +L+ F+ +
Sbjct: 673 KQS----DKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-07
Identities = 73/275 (26%), Positives = 111/275 (40%), Gaps = 51/275 (18%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L +V+ RP + ALMG +GAGK+TL+ L G +K G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 959 VSGYCEQTDIHSPH----VTLYESLLYSAWL-RLSSDVDTKKRKIFVDEVMELVELKPLR 1013
S + I H + L S++ + WL R + +FVD+ + K +
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 1014 DAL----VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
D L V LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 120 DELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 1070 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL-------------GRESHK 1116
+ G +V H+ +IF+ DE+ ++ R G+ I PL GR
Sbjct: 180 LKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKIIAMMVGRS--- 234
Query: 1117 LIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQ 1151
L + F P +LEV N++ Q
Sbjct: 235 LTQRFPDKENKPG--------EVILEVRNLTSLRQ 261
|
Length = 491 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412
V + + G+SGGQ++RV L VLL+DE ++ LD T ++ LK + + +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 413 TMIVALLQPAPETYDLFDDIILISEGQ 439
T+++ E L D ++++ +G+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 9e-07
Identities = 58/217 (26%), Positives = 82/217 (37%), Gaps = 70/217 (32%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
D ++ +S V LLGP GAGK+T+ + G
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--------------------- 90
Query: 242 TEQASGKITYCGHELNEFVPQRT------CAYISQHDLHHGEMTVRETLDFSGRCLGVGT 295
T +GKIT L VP R + Q D E TVRE L GR G+ T
Sbjct: 91 TSPDAGKITV----LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMST 146
Query: 296 RYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD 355
R EI+A + ++ L+ L+ AD V D
Sbjct: 147 R--------------------EIEAVIPSL--------------LEFARLESKADARVSD 172
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
+SGG K+R+T L+ ++L++DE +TGLD
Sbjct: 173 -----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 49/244 (20%), Positives = 86/244 (35%), Gaps = 73/244 (29%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
L ++ + L+GP GAGK+TL+ + +
Sbjct: 13 GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---------------------E 51
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQH------D---LHHGEMTVRETLDFSGRCLGV 293
SG I G ++++ R Y+ + D L V E + F+ GV
Sbjct: 52 LPTSGTIRVNGQDVSDL-RGRAIPYLRRKIGVVFQDFRLLPD--RNVYENVAFALEVTGV 108
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
R E+ +R L+L+GL +
Sbjct: 109 PPR-----EIRKRVPA-----------------------------ALELVGLSHKHRALP 134
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
+SGG+++RV +V + +L+ DE + LD TT++I LK+ ++ T
Sbjct: 135 A-----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTT 188
Query: 414 MIVA 417
++VA
Sbjct: 189 VVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 70/285 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
LK+VS V+ ++LGP G+GK+ L+ +AG K + S
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG-------------------FIKPD--S 53
Query: 247 GKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
GKI G ++ P+ R +Y+ Q+ MTV + + + + +
Sbjct: 54 GKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLK-------------KRK 100
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
+K EI+ + +A ++LG+D + + +SGG+
Sbjct: 101 VDK-------KEIERKVLEIA--------------EMLGID-----HLLNRKPETLSGGE 134
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425
++RV LV K+LL+DE + LD T ++ + LK++ VT++ + E
Sbjct: 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL-HVTHDFEEA 193
Query: 426 YDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
+ L D + ++ G+++ G + V FK P+ + VA+FL
Sbjct: 194 WALADKVAIMLNGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 72/329 (21%), Positives = 121/329 (36%), Gaps = 77/329 (23%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
++LK++S ++ + +LG GAGK+ LM L G + +
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-------------------MDQY 52
Query: 243 EQASGKITY-------CGH-ELNEFV--PQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 292
E SG+I Y CG+ E V P C G E +DF
Sbjct: 53 EPTSGRIIYHVALCEKCGYVERPSKVGEPCPVC----------GGTLEPEEVDFWN---- 98
Query: 293 VGTRYELLAELSRREKQQGI-----------KPDPEIDAFMKAVAVAGQETSLVTDYVLK 341
L++ RR ++ I D +D ++A+ G E +
Sbjct: 99 -------LSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151
Query: 342 LLGLDICADTMVGDEMR-----RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT 396
L+ MV R R +SGG+K+RV L + L DE + LD T
Sbjct: 152 LI-------EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTA 204
Query: 397 FQICKFLKQMVHIMDVTMIVALLQPAPETY-DLFDDIILISEGQIVYHGPRDNVLEFFEQ 455
+ L++ V ++M++ PE DL D I + G+I G D V+ F +
Sbjct: 205 KLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME 262
Query: 456 MGFKCPERKGVADFLQEVTSKKDQEQYWF 484
G E++ + + + ++ + +
Sbjct: 263 -GVSEVEKECEVEVGEPIIKVRNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKKQET 955
Q+LH++ G + ++G SG+GK+TL+ + L +G I +K++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 956 FARV-SGYCEQTDIHSPHVTLYESLLYSA-WLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
R +G Q PH+T E++++ +R +S + +K+ EL+
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ------ARELL------ 121
Query: 1014 DALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
A VGL P + LS Q++R+ IA L P ++ DEPTS LD V++
Sbjct: 122 -AKVGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178
Query: 1067 VRNTVDTGRTVVCTIHQ 1083
+++ + G T+V H+
Sbjct: 179 MQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 914 TALMGVSGAGKTTLMDVLAG--RKTGGYI--------EGDIKISGYPKKQETFARVSGYC 963
TA+ G SGAGKT+L++ ++G R G I + + I P+K R GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK-----RRIGYV 81
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
Q PH + +L Y K D+++ L+ ++PL L PG
Sbjct: 82 FQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVALLGIEPL---LDRYPG-- 127
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 55/244 (22%), Positives = 86/244 (35%), Gaps = 71/244 (29%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
V L DVS ++ L GP GAGKTTL+ KL ++
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-----KL-----------------LYG 50
Query: 242 TEQAS-GKITYCGHELNEFVPQRTCAYISQH------DLHH-GEMTVRETLDFSGRCLGV 293
S G++ G ++N R + + D + TV E + G
Sbjct: 51 ALTPSRGQVRIAGEDVNRL-RGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGK 109
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
R E+ RR L+ +GL+ AD
Sbjct: 110 KER-----EIQRRVGA-----------------------------ALRQVGLEHKADAFP 135
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
+SGG+++RV +V + +LL DE + LD + +I LK+ ++ T
Sbjct: 136 EQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTT 189
Query: 414 MIVA 417
+IVA
Sbjct: 190 VIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 69/282 (24%), Positives = 105/282 (37%), Gaps = 76/282 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
++ D+S + LLGP GAGK+T+ L G
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM---------------------ISPD 57
Query: 246 SGKITYCGHELNEFVPQRT------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
GKIT L E VP R + Q D E TVRE L GR G+ TR
Sbjct: 58 RGKITV----LGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR--- 110
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
EI+A V +L+ L+ AD V
Sbjct: 111 -----------------EIEA--------------VIPSLLEFARLESKADVRVAL---- 135
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
+SGG K+R+T L+ ++L++DE +TGLD I + L+ ++ ++
Sbjct: 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCP 461
E L D + ++ G+ + G +++ EQ+G C
Sbjct: 195 MEEAER--LCDRLCVLESGRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 68/269 (25%), Positives = 101/269 (37%), Gaps = 67/269 (24%)
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
V LK V+ V P + LLG GAGK+TLM L+G +H E
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IH--------------------E 56
Query: 244 QASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
G IT N+ Q I Q E+TV E L + GR L T+
Sbjct: 57 PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHL---TK--- 109
Query: 300 LAELSRREKQQGIKPDPEID-AFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
K G+ ID M+ A +L +GL + D V +
Sbjct: 110 --------KVCGV---NIIDWREMRVRA----------AMMLLRVGLKVDLDEKVAN--- 145
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT---FQICKFLKQMVHIMDVTMI 415
+S K+ + + L+ AKV++MDE ++ L + F I L++ + T I
Sbjct: 146 --LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAI 198
Query: 416 VALLQPAPETYDLFDDIILISEGQIVYHG 444
V + E + D ++ +G V G
Sbjct: 199 VYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 60/268 (22%), Positives = 99/268 (36%), Gaps = 73/268 (27%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+ LK+ + + +LG G+GK+TL Q L+ W +Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTL---------------LQ----LLAGAWDPQQ 392
Query: 245 ASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
G IT G E+ Q T + ++Q +H T+R+ L LA
Sbjct: 393 --GSITLNGVEIASLDEQALRETISVLTQ-RVHLFSGTLRDNL--------------RLA 435
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
D E+ A ++ V + S L E R +
Sbjct: 436 NPD--------ASDEELWAALQQVGLEKLLESAPDGLNTWL------------GEGGRRL 475
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGG+++R+ L+ A + L+DE + GLD T Q+ L + H T+++
Sbjct: 476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV---- 529
Query: 422 APETYDL-----FDDIILISEGQIVYHG 444
T+ L D II++ G+I+ G
Sbjct: 530 ---THRLRGLERMDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
LL +VS PG L+G +GAGK+TL+ +LAG G++ RV
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LRV 68
Query: 960 SGYCEQTDIHSPHVTLYESLL--YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL- 1016
GY Q P T+ + ++ + L ++++ + + L EL+ L + L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 1017 --------------VGLPG----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
+G P V+ LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 1059 A 1059
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYIEGDIKISGYPKKQE 954
VS F +TA++G SG GK+T++ + + R TG + D I Y + +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVD 79
Query: 955 --TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-KP 1011
+ R G Q P +++Y++++ A +L+ V+ + V+ ++ V L
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
++D L LS Q++RL IA + P +I MDEP S LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-IEGDIKISGYP----KK 952
+L VS F +T+LMG +G+GKTT + L K GY GD+ + G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKK-RKIFVDEVMELVELKP 1011
F R G Q P +++ +++L A +R V K+ R + + E+
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
++D L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1072 DTGRTVVCT 1080
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 879 NYYVDMPAEMKTEGV----GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA-- 932
+Y D A++ E + G+D L VS +TAL+G SG GK+T + L
Sbjct: 37 DYEFDGDAKLSVEDLDVYYGDDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94
Query: 933 -GRKTGGYIEGDIKISGYPKKQETFARVS-----GYCEQTDIHSPHVTLYESLLYSAWLR 986
R I+G +++ G Q+ V G Q+ P ++ E++ Y R
Sbjct: 95 NDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGP--R 151
Query: 987 LSSDVDTKKRKIFV-----DEVMELVELKPLRDALVGLPGVN--------GLSTEQRKRL 1033
D++T + D ELVE + LR A + VN GLS Q++RL
Sbjct: 152 KHGDINTGLLARLLGRDDKDAEDELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRL 209
Query: 1034 TIAVELVANPSIIFMDEPTSGLDARAAA 1061
IA L +P +I MDEP S LD A +
Sbjct: 210 CIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
G L+G +G+GK+TL+ L G +G I + I+ K + G Q
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQY- 91
Query: 968 IHSPHVTLYESLLYS--AW----LRLSSDVDTKKRKIFVDEVMELVELK--PLRDALVGL 1019
P L+E + A+ L LS + + + R V M +V L +D
Sbjct: 92 ---PEYQLFEETIEKDIAFGPINLGLSEE-EIENR---VKRAMNIVGLDYEDYKDK---- 140
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
LS Q++R+ IA + P I+ +DEPT+GLD + ++ ++ +
Sbjct: 141 -SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTII 199
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVP-GVPKIK 1131
+ D+ + D +++M + G+ G RE K +E E++ VP++
Sbjct: 200 LVSHSMEDVAKLADRIIVMNK-GKCELQGTP-REVFKEVETLESIGLAVPQVT 250
|
Length = 287 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 64/209 (30%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970
VL + GVSG+GK+TL+ G Y G ++ + K S
Sbjct: 21 NVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK----------------FS 58
Query: 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK----PLRDALVGLPGVNGLS 1026
+ IF+D++ L+++ L L + LS
Sbjct: 59 RNKL-----------------------IFIDQLQFLIDVGLGYLTLGQKL------STLS 89
Query: 1027 TEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084
+ +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G TV+ H
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149
Query: 1085 SIDIFEAFDELLLM-----KRGGRVIYAG 1108
D+ + D ++ K GG+V+++G
Sbjct: 150 --DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 17/195 (8%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
G + A+MG SGAGK+TL++++AG G D +G Q + + Q +
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF----QEN 79
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
H+T+ +++ L K ++V++ + + D L LP LS
Sbjct: 80 NLFAHLTVRQNI------GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP--EQLSG 131
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSI 1086
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 1087 DIFEAFDELLLMKRG 1101
D ++ ++ +G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 913 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPKKQETF-----ARVS 960
+TAL+G SG GK+T + D++ G K IEG++ G F R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 961 GYCEQTDIHSPHV-TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-----LRD 1014
G QT +P + ++Y+++ Y + + D K+K+ DE++E K ++D
Sbjct: 91 GMVFQTP--NPFLMSIYDNISYGPKIHGTKD----KKKL--DEIVEQSLKKSALWNEVKD 142
Query: 1015 ALVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
L N LS Q++RL IA L P++I MDEPTS LD + + + N +
Sbjct: 143 KL----NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 1073 TGRTVVCT 1080
+ ++ T
Sbjct: 199 SYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 21/171 (12%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKK 952
R Q+L+ +S G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWL-----RLSSDVDTKKRKIFVDEVMELV 1007
R G+ Q H+T+++++ + + R ++ K V +++E+V
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK----VTQLLEMV 124
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
+L L D P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 125 QLAHLADR---YPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 59/266 (22%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
IL ++S +KP + ++G G+GK+TL KL I R + E
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKL--------------IQRFYVPEN- 56
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
G++ GH+L A L R +GV + +L S
Sbjct: 57 -GRVLVDGHDL---------ALADPAWLR--------------RQVGVVLQENVLFNRSI 92
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEMRRGISGG 364
R+ P ++ ++A +AG D++ +L G D T+VG E G+SGG
Sbjct: 93 RDNIALADPGMSMERVIEAAKLAGAH-----DFISELPEGYD----TIVG-EQGAGLSGG 142
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424
Q++R+ L+ ++L+ DE ++ LD + I + + + V +I L
Sbjct: 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS---- 198
Query: 425 TYDLFDDIILISEGQIVYHGPRDNVL 450
T D II++ +G+IV G D +L
Sbjct: 199 TVKNADRIIVMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 39/191 (20%), Positives = 59/191 (30%), Gaps = 66/191 (34%)
Query: 204 GPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE--FVP 261
GP G GKTTL+ LAG L SG++ + G L E P
Sbjct: 33 GPNGIGKTTLLRILAGLLRP---------------------DSGEVRWNGTALAEQRDEP 71
Query: 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321
R Y+ E++ E L F A +
Sbjct: 72 HRNILYLGHLPGLKPELSALENLHF-------------WAAIHGGA-------------- 104
Query: 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKV 381
+ L +GL D +S GQ++R+ + + A +
Sbjct: 105 -----------QRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPL 148
Query: 382 LLMDEISTGLD 392
++DE +T LD
Sbjct: 149 WILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 327 VAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG-----ISGGQKKRVTTGEMLVGAAKV 381
+AG + + + VL+LL L VG E + +SGGQK+RV L KV
Sbjct: 109 IAGVPKAEIEERVLELLEL-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
Query: 382 LLMDEISTGLDSSTTFQICKFLKQM-----------VHIMDVTMIVALLQPAPETYDLFD 430
LL DE ++ LD TT I L+ + H M+V + D
Sbjct: 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC------------D 209
Query: 431 DIILISEGQIVYHGPRDNVLEFF 453
+ ++ +G++V G V E F
Sbjct: 210 RVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQETF 956
L V+ + G +L+G SG GK+TL+++++G + T G +EG P + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
S P +T+ E+ + A R+ D+ +R+ V+E + LV L +A
Sbjct: 61 QNYSLL--------PWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAA 108
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1075
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 109 DKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1076 TVVCTIHQPSIDIFEAF---DELLLMKRG 1101
TV+ H D+ EA D ++++ G
Sbjct: 167 TVLMVTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 42/205 (20%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP-K 951
++R+ L +S G L + G +GAGKT+L+ +LAG R G++ G P +
Sbjct: 12 DERI-LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIR 66
Query: 952 KQ-ETFARVSGYCEQTDIHSPHV----TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
+Q + + + Y H P + T E+L + RL D +
Sbjct: 67 RQRDEYHQDLLYLG----HQPGIKTELTALENLRFYQ--RLHGPGDDEA----------- 109
Query: 1007 VELKPLRDAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
L +AL VGL G V LS Q++R+ +A + + +DEP + +D +
Sbjct: 110 -----LWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
Query: 1060 AAIVMRTVRNTVDTGRTVVCTIHQP 1084
A + + + G V+ T HQ
Sbjct: 165 VARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISG---YPKK 952
+ LH +S F LTAL+G SG GK+T + L I G+IK G Y K
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77
Query: 953 QETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL- 1009
+ + G Q P ++Y+++ Y L+++ D + V+E ++ +
Sbjct: 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIW 134
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
K +D L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 135 KETKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 35/170 (20%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--EGDIKISGYPKKQET 955
+L+++S + R G + G SG GK+TL+ ++A T G + EG+ IS E
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DISTLKP--EI 78
Query: 956 FARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
+ + YC QT P + T+Y++L++ +R IF+D++
Sbjct: 79 YRQQVSYCAQT----PTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERF------ 124
Query: 1013 RDALVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
LP + LS +++R+++ L P ++ +DE TS LD
Sbjct: 125 -----ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 69/296 (23%), Positives = 110/296 (37%), Gaps = 84/296 (28%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
L VS +K LLGP G GKTTL+ +AG F+
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG---------FE------------ 50
Query: 243 EQASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
SG+I G ++ P +R + Q+ +TV E + F R + A
Sbjct: 51 TPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----A 105
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
E+ R + L L+ L+ A+ ++
Sbjct: 106 EIKERVAEA-----------------------------LDLVQLEGYANRKP-SQL---- 131
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++RV LV KVLL+DE LD + LK++ + +T +
Sbjct: 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV---- 187
Query: 422 APETYD------LFDDIILISEGQIVYHG-PRDNVLEFFEQMGFKCPERKGVADFL 470
T+D + D I ++++G+I G P + +E+ P + VADF+
Sbjct: 188 ---THDQEEALTMSDRIAVMNKGKIQQIGTPEE----IYEE-----PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIH 969
G + G +GAGKTTL+ VLAG G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029
++ E+L + L ++ K + +V L D L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 62/274 (22%), Positives = 97/274 (35%), Gaps = 89/274 (32%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
++L D+S VK + LGP GAGKTT M + G +I+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG----------------LIK---- 51
Query: 243 EQASGKITYCGHEL--NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
SG+IT+ G N +R A I + +T RE L R LG+
Sbjct: 52 -PDSGEITFDGKSYQKNIEALRRIGALIEAPGF-YPNLTARENLRLLARLLGI------- 102
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
ID VL ++GL A V G
Sbjct: 103 -------------RKKRIDE------------------VLDVVGLKDSAKKKVK-----G 126
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM----------VHIM 410
S G K+R+ L+G +L++DE + GLD ++ + + + H++
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186
Query: 411 DVTMIVALLQPAPETYDLFDDIILISEGQIVYHG 444
VA D I +I++G+++ G
Sbjct: 187 SEIQKVA------------DRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 59/213 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+L VS + P +LGP G+GK+TL+ LAG L +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL---------------------DPL 388
Query: 246 SGKITYCG---HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G++T G L++ +R + +Q D H + TVRE L LA
Sbjct: 389 QGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAHLFDTTVRENL--------------RLA- 432
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+PD + A+ G D++ L DT++G E +S
Sbjct: 433 ----------RPDATDEELWAALERVGLA-----DWLRALPD---GLDTVLG-EGGARLS 473
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
GG+++R+ L+ A +LL+DE + LD+ T
Sbjct: 474 GGERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 64/292 (21%), Positives = 102/292 (34%), Gaps = 102/292 (34%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
K+ + ++S V + + LLGP GAGK+TL+ + G L
Sbjct: 11 GKQTA--VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL------------------ 50
Query: 240 WKTEQASGKITYCGHELNEFVPQRTCAYISQHDLH-----------HGEMTVRETLDFSG 288
SG+I + GH ++ DLH + +T RE L
Sbjct: 51 ---RPTSGEIIFDGHPW------------TRKDLHKIGSLIESPPLYENLTARENLKVHT 95
Query: 289 RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDIC 348
LG+ PD ID VL ++ L
Sbjct: 96 TLLGL--------------------PDSRIDE------------------VLNIVDLTNT 117
Query: 349 ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQ----ICKFLK 404
S G K+R+ L+ K+L++DE + GLD + I F +
Sbjct: 118 GKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172
Query: 405 QMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHG---PRDNVLEFF 453
Q + ++ + I++ E L D I +ISEG + Y G +N+ + F
Sbjct: 173 QGITVILSSHILS------EVQQLADHIGIISEGVLGYQGKINKSENLEKLF 218
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 884 MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 943
E K ++L +S F G + ++G SGAGK+TL+ ++ + EG
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGS 59
Query: 944 IKISGYPKKQE---TFARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRK 997
I I G K R G Q PH+ T+ +++ Y L+ +VD
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQ----QPHLFEGTVKDNIEYGPMLKGEKNVD----- 110
Query: 998 IFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
V+ + +V L + V LS + +R++IA L NP ++ +DEPTS LD
Sbjct: 111 --VEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP 164
Query: 1058 RAAAIVMRTVRN 1069
+ I+ +
Sbjct: 165 TSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 25/199 (12%)
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA--RVSGYCEQTDIHSPH 972
AL+G +G+GK+TL +L G EG+I++ G P + + R Q D P
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD---P- 424
Query: 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL-------VGLPGVNGL 1025
V L ++ L A + L D+ ++ V + +E V+L L +L +G G N L
Sbjct: 425 VVLADTFL--ANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNL 477
Query: 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085
S Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLS 536
Query: 1086 IDIFEAFDELLLMKRGGRV 1104
I EA D +L++ RG V
Sbjct: 537 T-IVEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQET 955
Q L V+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 956 FARVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKR-KIFVDEVMELVELK--P 1011
F R G Q T+Y+++ + +S D ++R +D+V L + K P
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
++ LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 136 IQ-----------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 1072 DTGRTVVCTIH 1082
G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 60/207 (28%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETF--A 957
LL +S +PG + G SG GK++L LAG + G I G P+ ++
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRI---GMPEGEDLLFLP 70
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLR-LSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
+ Y P TL E L+Y W LS
Sbjct: 71 QRP-YL-------PLGTLREQLIY-PWDDVLSGG-------------------------- 95
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
EQ+ RL A L+ P +F+DE TS LD + + + ++ + G T
Sbjct: 96 -----------EQQ-RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGIT 140
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGR 1103
V+ H+PS+ F D +L + G
Sbjct: 141 VISVGHRPSLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 31/201 (15%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPK 951
Q L VS +TA++G SG GK+T + + + +EG++ G Y
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 952 KQETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRL---SSDVDTK-----KRKIFVD 1001
+ A R G Q P ++Y+++ Y L++ D+D + +R D
Sbjct: 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYDGDIDERVEESLRRAALWD 168
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
EV + ++ L LS Q++RL IA + +P +I MDEP S LD A +
Sbjct: 169 EVKDQLDSSGLD-----------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217
Query: 1062 IVMRTVRNTVDTGRTVVCTIH 1082
+ + + TVV H
Sbjct: 218 KIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 71/287 (24%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
+R IL+D+S ++P R+T LLG GAGK+TL+ ALAG L R
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPR------------ 58
Query: 241 KTEQASGKITYCGHELNEFVPQRTC---AYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
+ +G +T G L R A + Q + FS R + + RY
Sbjct: 59 -GARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRY 109
Query: 298 ---ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVG 354
L+ R+ + +A+A+AG L+G D+
Sbjct: 110 PHARRAGALTHRDG----------EIAWQALALAGATA---------LVGRDVTT----- 145
Query: 355 DEMRRGISGGQKKRVTTGEML---------VGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405
+SGG+ RV +L + LL+DE + LD + ++ +++
Sbjct: 146 ------LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199
Query: 406 MVH--IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+ + V IV A D I ++++G IV HG +VL
Sbjct: 200 LARDWNLGVLAIVHDPNLAARHA---DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 20/208 (9%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------- 953
L ++ RPG AL+G SGAGK+TL +L + G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
A V + + + V E++ Y +V+ R E + L
Sbjct: 414 ARMALVP---QDPVLFAASV--MENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGY 466
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D +G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+
Sbjct: 467 DTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMK 524
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
GRT + H+ + + +A D +++M +G
Sbjct: 525 GRTTLIIAHRLAT-VLKA-DRIVVMDQG 550
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKKQETFA 957
Q L ++ +TAL+G SG GK+T + I+G ++I G K +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 958 RVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
+ P+V ++YE++ Y+ L ++ + VD + ++ + ++D
Sbjct: 76 ALRKNVGMV-FQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD 134
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
L LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 135 KLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 1005 ELVELKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
E VE P D +V G N LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGEN-LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 1064 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105
+T+R TV+ H+ +D D +L++ + GRV+
Sbjct: 179 QKTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDK-GRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 73/282 (25%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+ DV+ ++ +L+GP G+GKTT + +I R+ E
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLK-------------------MINRL--IEPT 54
Query: 246 SGKITYCGHELNEFVP---QRTCAY-ISQHDL--HHGEMTVRETLDFSGRCLGVGTRYEL 299
SG+I G ++++ P +R Y I Q L H +TV E + + LG
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH---LTVAENIATVPKLLGW------ 105
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
+ ++ D +L L+GLD + D
Sbjct: 106 ----DKERIKKRA------------------------DELLDLVGLD---PSEYADRYPH 134
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
+SGGQ++RV L +LLMDE LD T Q+ + +K++ + T IV +
Sbjct: 135 ELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVT 193
Query: 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL-----EFFEQM 456
E L D I ++ G+IV + D +L +F E
Sbjct: 194 HDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 61/283 (21%), Positives = 99/283 (34%), Gaps = 82/283 (28%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
KR +++ VS VK + LLGP GAGKTT + G +++
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG----------------LVK- 51
Query: 240 WKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-- 297
SGKI + D+ M R L G+G Y
Sbjct: 52 ----PDSGKI-----------------LLDGQDITKLPMHKRARL-------GIG--YLP 81
Query: 298 ---ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVG 354
+ +L+ E I A ++ ++ +E + +L+ + +
Sbjct: 82 QEASIFRKLTVEEN---------ILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS 132
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTF---QICKFLKQM---VH 408
+SGG+++RV L K LL+DE G+D +I K LK V
Sbjct: 133 -----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187
Query: 409 IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
I D ET + D +I EG+++ G + +
Sbjct: 188 ITD--------HNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 70/289 (24%), Positives = 118/289 (40%), Gaps = 71/289 (24%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
+D +LK ++ S +T L+G G GK+TL + L+G L R Q L W+
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL------RPQKGAVL----WQ 61
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
+ LD+S R G+ + +A
Sbjct: 62 GK---------------------------------------PLDYSKR--GLLALRQQVA 80
Query: 302 ELSRREKQQGIKPDPEID-AF-MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
+ + +QQ D + D AF ++ + V E + D L L+ + +
Sbjct: 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI-----Q 135
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV----HIMDVTMI 415
+S GQKKRV LV A+ LL+DE + GLD + Q+ ++++V H++ +
Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195
Query: 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL---EFFEQMGFKCP 461
+ L+ Y++ D + ++ +GQI+ HG V E EQ G P
Sbjct: 196 IDLI------YEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 62/240 (25%)
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
++GP GAGK+TL+ +AG F+ E ASG I P
Sbjct: 29 IMGPSGAGKSTLLNLIAG--------------FI-------EPASGSIKVNDQSHTGLAP 67
Query: 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDA 320
QR + + Q + +TVR+ + G+ P +++A
Sbjct: 68 YQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPGLKLNA 103
Query: 321 FMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK 380
+ V + + DY+ +L +SGGQ++RV LV
Sbjct: 104 EQQEKVVDAAQQVGIADYLDRLPE---------------QLSGGQRQRVALARCLVRPNP 148
Query: 381 VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQI 440
+LL+DE + LD ++ +KQ+ T+++ + + + I ++S+G+I
Sbjct: 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--------- 948
L +L ++ + G AL+G SG+GK+T++ +L + EG I++ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 949 ----YPKKQETFARVS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVD 1001
P ++ ++ G Q+ PH T+ +++ + L L R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM-----ARAEAEK 125
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
MEL+++ L D +P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 126 RAMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 1062 IVMRTVRN-TVDTGRTVVCTIHQ 1083
V+ +R + T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 352 MVG-----DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
MVG D M +SGGQ++RV L KV+L DE+++ LD ++ ++++
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 407 VHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGV 466
D+TM++ + + D + +G+IV G D + F+ P+ +
Sbjct: 193 ASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI--------FRQPKEERT 243
Query: 467 ADFLQEV 473
+FL +V
Sbjct: 244 REFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 41/232 (17%)
Query: 913 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGY----PKKQETFARVS- 960
+TA++G SG GKTTL+ D + G + +EG I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV--- 1017
G Q P +++Y+++ + R+ K K +D ++E + L+ A +
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHG----VKSKHKLDRIVE----ESLKKAALWDE 135
Query: 1018 -----GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
PG LS Q++RL IA L P +I +DEPTS LD A + + +
Sbjct: 136 VKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI-EKLLEELS 193
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP---LGRESHKLIEYF 1121
T+V H I A D + M RG + Y + R +KL E +
Sbjct: 194 ENYTIVIVTHNIGQAIRIA-DYIAFMYRGELIEYGPTREIVERPKNKLTEEY 244
|
Length = 250 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKKQ 953
++Q LH VS G + L+G +GAGKTTL+ L G R T G I D K I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-L 1012
V+ E + S +T+ E+L + +R F + + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1073 TGRTVVCTI 1081
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970
G LT ++G G GK++L+ + G +EG + S + + +F E T +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSF-------EATRSRN 77
Query: 971 PHVTLYESLLYSAWLRLSSDVD---------TKKRKIFVDEVMEL---VELKPLRDAL-V 1017
+ Y + WL L++ V+ K+R V + L ++L P D +
Sbjct: 78 RYSVAYAA--QKPWL-LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGR 1075
G G+N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D R
Sbjct: 135 GERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR 193
Query: 1076 TVVCTIHQPSIDIFEAFDELLLMKRG 1101
T+V H+ + D ++ MK G
Sbjct: 194 TLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGY 949
G +Q L++VS G + ++G SGAGK+TL+ ++L +G I ++
Sbjct: 13 QGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72
Query: 950 PKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD-TKKRKIF--VDEVMEL 1006
+ T AR Q + H L S + L ++D T K +I V E++ L
Sbjct: 73 SNSELTKAR-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL 127
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
V L D+ P + LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 128 VGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182
Query: 1067 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111
++ G T++ H+ +D+ + + + + G +I G +
Sbjct: 183 LKEINRRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 35/246 (14%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKKQETFA 957
L V+ G TA +G +G+GK+T+M +L G G D I+ K +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK---- 78
Query: 958 RVSGYCEQTDIHS--PHVTLY----ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
DI V L ES L+ + DV + V + E L
Sbjct: 79 ---------DIKQIRKKVGLVFQFPESQLFEE--TVLKDVAFGPQNFGVSQE-EAEALAR 126
Query: 1012 LRDALVG----LPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
+ ALVG L N LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 127 EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186
Query: 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVP 1125
+ +G T+V H D+ D + ++++G V+ P ++ + +++ E
Sbjct: 187 LFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEKQ 243
Query: 1126 -GVPKI 1130
GVPKI
Sbjct: 244 LGVPKI 249
|
Length = 280 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 38/160 (23%)
Query: 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS-- 970
LT L+G SG GKTT++ ++AG +T G I + G + V E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 971 ------PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL------KPLRDALVG 1018
PH+T++E++ + ++ + + R V E + +V+L KP +
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQRKPHQ----- 144
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 ------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 40/220 (18%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
+ +L ++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ-- 547
Query: 956 FARVSGYCEQTDIHSPHVTLY--ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ +H V L E +L+S +R ++ +E+M +
Sbjct: 548 -------YDHHYLHR-QVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAH 597
Query: 1014 DALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
D ++ P NG TE Q++R+ IA LV P ++ +DE TS LDA
Sbjct: 598 DFIMEFP--NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE---- 651
Query: 1063 VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+ ++ + RTV+ H+ S E D++L++K+G
Sbjct: 652 CEQLLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 50/236 (21%), Positives = 80/236 (33%), Gaps = 76/236 (32%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
++LK ++ + + LLG GAGK+TL+ LH N +R QS
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLL------LHLNGLLRPQS----------- 46
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G + G L D+S + L
Sbjct: 47 ----GAVLIDGEPL----------------------------DYSRKGL----------- 63
Query: 303 LSRREKQQGIKPDPEIDAFMKAV-----------AVAGQETSLVTDYVLKLLGLDICADT 351
L RR++ + DP+ F V ++ E L +G +
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER 123
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
+SGG+KKRV + VLL+DE + GLD + Q+ L+++
Sbjct: 124 PT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-05
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ++R+ L+ +L++DE ++ LD T I + L+ + T+IV
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL--AKGKTVIVI--- 151
Query: 421 PA--PETYDLFDDIILISEGQ 439
A T D II++ +G+
Sbjct: 152 -AHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 72/273 (26%), Positives = 119/273 (43%), Gaps = 71/273 (26%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ LK ++ + M LLGP GAGK+TL LH N ++ S + LI K
Sbjct: 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLF------LHFNGILKPTSGEVLI----KG 63
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
E I Y L E ++T + Q+ D TV E + F LG
Sbjct: 64 E----PIKYDKKSLLEV--RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG--------- 108
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
LS+ E ++ +K +A +KAV + G E ++ +
Sbjct: 109 -LSKEEVEKRVK-----EA-LKAVGMEGFE-----------------------NKPPHHL 138
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQKKRV +L +++++DE ++GLD QI K L + + +T+I++
Sbjct: 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIIS---- 193
Query: 422 APETYDL------FDDIILISEGQIVYHG-PRD 447
T+D+ D + ++S+G+I+ G P++
Sbjct: 194 ---THDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 68/309 (22%), Positives = 117/309 (37%), Gaps = 50/309 (16%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-------KISG 948
D ++L ++S G + ++G SGAGK+ LM VL G G I + G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 949 YPKKQETFARVSGYCEQT------DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Y ++ C T D + L + + L +D
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 1003 VMELVE------LKPLRDALVGLPGVN----------GLSTEQRKRLTIAVELVANPSII 1046
V+E +E + + A+ + V LS +++R+ +A +L P +
Sbjct: 131 VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLF 190
Query: 1047 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105
DEPT LD + A +V + V +G ++V T H P + I + D+ + ++ G +
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLEN-GEIK 248
Query: 1106 YAGPLGRESHKLIEYF-EAVPGVPKIKDAY--NPATWMLEVSN--ISVENQL-----GVD 1155
G +++ F E V V K + P + VS ISV+ + V
Sbjct: 249 EEG----TPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVS 304
Query: 1156 F----AEIY 1160
EI+
Sbjct: 305 LEVKEGEIF 313
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQK+RV L KVLL DE ++ LD +TT I + LK++ + +T I+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITH 199
Query: 421 PAPETYDLFDDIILISEGQIVYHG 444
+ D + +IS G+++ G
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVS 960
VS R G A++G +G+GK+TL +LAG T G +I I+ +P ++ S
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRS 86
Query: 961 GYCEQTDIHSPHVTLYESL----LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
P+ +L L + LRL++D++ ++R+ + E + +V L P
Sbjct: 87 KRIRMI-FQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 146 Y----PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 36/194 (18%)
Query: 884 MPAEMKTEGV----GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---T 936
M +M+++ + GE Q L+ ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS 58
Query: 937 GGYIEGDIKISG---YPKKQETF---ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSD 990
IEG++ + G Y K + RV G Q P +++Y+++ Y + D
Sbjct: 59 NVKIEGEVLLDGKNIYDKDVDVVELRKRV-GMVFQKPNPFP-MSIYDNVAYGPRIHGIKD 116
Query: 991 VDT--------KKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVAN 1042
K+ DEV + +LK + AL LS Q++RL IA +
Sbjct: 117 KKELDKIVEWALKKAALWDEVKD--DLK--KSAL-------KLSGGQQQRLCIARTIAVK 165
Query: 1043 PSIIFMDEPTSGLD 1056
P +I MDEPTS LD
Sbjct: 166 PDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 43/228 (18%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYIEGD-IKISGYPKK--Q 953
Q + VS + G A++G +GAGKTTL+++L T G I D I I+ ++ +
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE----- 1008
++ A V ++ L++ +R ++ + +EV E +
Sbjct: 409 KSIATV---------------FQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1009 ---LKPLR--DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
LK D LVG G N LS +R+RL IA ++ N I+ +DE TS LD A
Sbjct: 452 DFILKRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA-- 508
Query: 1064 MRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V+N +D RT H+ S + A +L+L GR+I G
Sbjct: 509 --RVKNAIDALRKNRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 991 VDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050
V + V E ++ V++ D N LS Q++R+ IA L NPS+I +DE
Sbjct: 114 VPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQRVAIAGVLALNPSVIILDE 168
Query: 1051 PTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAF--DELLLMKRG 1101
TS LD A ++ VR + T++ H D+ EA D +++M +G
Sbjct: 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +VS R G + +L G +GAGK+TLM VL+G G EG+I G + S
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ------AS 74
Query: 961 GYCEQTD-----IHS-----PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
+ IH +++ E++ + +D + +++ ++L
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL- 133
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
D P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 134 ---DINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YP 950
+ + L + F +TAL+G SG GK+T + L G I G++ + G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 951 KKQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
++ + G Q P ++YE+++Y LRL+ K K +DE +E
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAG----VKDKAVLDEAVE-TS 128
Query: 1009 LKP------LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
LK ++D L LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 129 LKQAAIWDEVKDHL--HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY----- 949
Q L ++ G L+G SGAGK++L+ VL +E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 950 ----PKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS--SDVDTKKRKIFVDEV 1003
K R G Q PH+T+ ++L+ A R+ S R +++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALAR---AEKL 125
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+E + LKP D P LS Q++R+ IA L+ P ++ DEPT+ LD A +
Sbjct: 126 LERLRLKPYADRF---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 1064 MRTVRNTVDTGRTVVCTIHQ 1083
+ +R +TG T V H+
Sbjct: 181 VSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 52/237 (21%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 951
L +VS G A++G +G+GK+T+ +L G + G+IKI G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITI 73
Query: 952 KQETFARVS---------------GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKR 996
+E + G + DI A+ + V KK
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDI--------------AFGLENKKVPPKKM 119
Query: 997 KIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
K +D++ + V ++ D L P LS Q++R+ IA L NP II DE TS LD
Sbjct: 120 KDIIDDLAKKVGME---DYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1057 ARAAAIV---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLMKRGGRVIYAG 1108
+ + M +R T +T++ H D+ EA D++++ G++I G
Sbjct: 175 PKGKREIKKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 15/212 (7%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L + RPG L G +GAGK+TLM +L+G G +G+I SG P K A
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK----ASNI 72
Query: 961 GYCEQTDIHSPH--VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM-----ELVELKPLR 1013
E+ I H +TL L + + L +++ T M L+ L
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEI-TLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
V P V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 132 ADNVTRP-VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--K 188
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105
V C ++ +A + + + R G+ +
Sbjct: 189 AHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 20/193 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
LL ++ RPG + G SGAGKT+L+ LAG + G I P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
+ Q + P TL E+L Y + D + V+ V L L + L
Sbjct: 460 --FLPQRP-YLPQGTLREALCYP---NAAPDFSDA----ELVAVLHKVGLGDLAERLDEE 509
Query: 1020 -PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 1079 CTIHQPSIDIFEA 1091
H+P++ F +
Sbjct: 569 SVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 29/225 (12%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKKQET 955
L+ ++ + + G + AL+G SG+GK+ ++ +L T G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 956 F-ARVSGYCEQTDIHS--PHVTLYESLLYSAWLRLSSDVDTKKR------KIFVDEVMEL 1006
R Q + P T+ + + + + + + E+
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
++ P + LS +R+ IA+ L+ P + DEPT+ LD A V++
Sbjct: 119 LKKYPFQ-----------LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL 167
Query: 1067 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
+R G ++ H + + DE+ +M GR++ G +
Sbjct: 168 LRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 33/200 (16%)
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKKQETFARVSGYCE-QTDIH 969
L+G +GAGK+TL+ +LAG I G + + G RVS +
Sbjct: 52 GLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG---------RVSSLLGLGGGFN 96
Query: 970 SPHVTLYESL-LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
P +T E++ L L LS K+ +DE++E EL D LP V S+
Sbjct: 97 -PELTGRENIYLNGRLLGLS----RKEIDEKIDEIIEFSELGDFID----LP-VKTYSSG 146
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1088
+ RL A+ P I+ +DE + DA R +R + G+TV+ H PS I
Sbjct: 147 MKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-I 205
Query: 1089 FEAFDELLLMKRGGRVIYAG 1108
D L++++ G++ + G
Sbjct: 206 KRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 913 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YIEGDIKISGYPKKQETFARVSGY 962
+TA++G SG GK+T +++++ KT G Y + +I Y +E V G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNV-GM 109
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG---- 1018
Q P ++Y+++ Y + K K +DE++E K LR A +
Sbjct: 110 VFQKPNPFPK-SIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 1019 ---LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 33/139 (23%), Positives = 73/139 (52%), Gaps = 25/139 (17%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQK+RV +L K++++DE ++ LD + QI K ++++ ++T+I
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI--- 200
Query: 421 PAPETYDL-----FDDIILISEGQIVYHG-PRD--NVLEFFEQMGFKCP---------ER 463
T+D+ D ++++ +G+++ G P + + +E +++G P +
Sbjct: 201 ----THDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKE 256
Query: 464 KGVADFLQEVTSKKDQEQY 482
KG++ QE+ +++ QY
Sbjct: 257 KGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 31/133 (23%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM-----------VHI 409
+SGGQK+RV L KVLL DE ++ LD +TT I + LK + H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADF 469
MDV + D + +I G++V G V E F P+ +F
Sbjct: 201 MDVVKRIC------------DRVAVIDAGRLVEQGT---VSEVFSH-----PKHPLTREF 240
Query: 470 LQEVTSKKDQEQY 482
+Q E Y
Sbjct: 241 IQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 74/260 (28%)
Query: 200 TLLLGPPGAGKTTLMLALAG-------KLHENLRVRFQSNKFLIIRIWKTEQASGKITYC 252
T + G G+GKTTL+ +AG ++ N R F S K + + K
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK----------- 74
Query: 253 GHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGI 312
R Y+ Q ++VR L RY G+
Sbjct: 75 ----------RRIGYVFQEARLFPHLSVRGNL-----------RY-------------GM 100
Query: 313 KPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTG 372
K E + + V++LLG+ + G +SGG+K+RV G
Sbjct: 101 K------------RARPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIG 143
Query: 373 EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA--LLQPAPETYDLFD 430
L+ + ++LLMDE LD ++I +L+++ + ++ LQ E L D
Sbjct: 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLAD 200
Query: 431 DIILISEGQIVYHGPRDNVL 450
++++ +G++ GP V
Sbjct: 201 RVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 34/180 (18%), Positives = 53/180 (29%), Gaps = 68/180 (37%)
Query: 211 TTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP----QRTCA 266
+TL+ + G L SG I G + ++
Sbjct: 1 STLLKLITGLLQPT---------------------SGTILLDGEDGTGLSSRKLLRKRIG 39
Query: 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVA 326
+ Q E+TVRE L F R + + ++
Sbjct: 40 VVFQDPQLFPELTVRENLFFGLR-----------DKEADARAEE---------------- 72
Query: 327 VAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDE 386
L+ +GL D + SGGQK+RV L+ K+LL+DE
Sbjct: 73 ------------ALERVGLPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 27/213 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFA 957
L +S R G + L+G +GAGK+TL+ +AG G G I+ +G P + A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
R Y Q + +++ L L T+ ++EV E + L
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK----- 119
Query: 1018 GLP-GVNGLS-TE-QRKRLTIAVELVANPSI------IFMDEPTSGLDARAAAIVMRTVR 1068
L VN LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 120 -LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 1069 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
G VV + H + + A D + L+K+G
Sbjct: 178 ELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFA--RVSGYCEQ 965
PG + AL+G +GAGK+T+M VL G + G I Y K+ TF + S
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL-------YLGKEVTFNGPKSSQEAGI 81
Query: 966 TDIHS-----PHVTLYESLLY-----SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
IH P +T+ E++ + + R +D KK D+++ + L+ D
Sbjct: 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSDK 137
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
LVG LS +++ + IA L +I MDEPT L + R +R GR
Sbjct: 138 LVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR 192
Query: 1076 TVVCTIHQPSIDIFEAFDELLLMKRG 1101
+V H+ +IFE D++ + + G
Sbjct: 193 GIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 57/230 (24%)
Query: 883 DMPAEMKTEGVGEDRLQLLH-SVSGAFRPGVLTA-------LMGVSGAGKTTLMDVLAGR 934
D+ E EG+GE L++ + S G R T + G+ GAG+T L L G
Sbjct: 249 DLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA 308
Query: 935 KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPH---------VT----------- 974
+ G+I + G + I SP V
Sbjct: 309 R--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351
Query: 975 --LYESLLYSAWLRLSSD--VDTKKRKIFVDEVMELVELK-PLRDALVG-LPGVNGLSTE 1028
+ E++ ++ R S +D +K + + + + +K P + +G L G N
Sbjct: 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN----- 406
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
Q+K + +A L +P ++ +DEPT G+D A A + R +R G+ ++
Sbjct: 407 QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 57/262 (21%), Positives = 95/262 (36%), Gaps = 74/262 (28%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL 256
+T L GP G+GKT+L+ +AG G+I G L
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRP---------------------DEGRIELNGRVL 62
Query: 257 -----NEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 309
F+P +R Y+ Q TVR L + S R +
Sbjct: 63 VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG-------------MWKSMRAQ- 108
Query: 310 QGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRV 369
D ++ LLG++ D G +SGG+K+RV
Sbjct: 109 --------------------------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRV 137
Query: 370 TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLF 429
G L+ A ++LLMDE LD +I +L+++ +++ ++ E L
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLA 196
Query: 430 DDIILISEGQIVYHGPRDNVLE 451
D ++++ G++ GP + V
Sbjct: 197 DRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGY 949
RL +L +VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 950 PKKQETFARVS--GYCEQTDIHSPHVT----LYESLLYSAWLRLSSDVDTKK--RKIFVD 1001
++ R GY Q P V+ + E LL R ++ ++ ++ +
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
E L L P S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 140 E--RLWHLPP-----------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 1062 IVMRTVRNTVDTGRTVVCTIHQPSI 1086
+V+ + G ++ H +
Sbjct: 187 VVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 63/275 (22%), Positives = 118/275 (42%), Gaps = 61/275 (22%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
S +LKD++ +KP ++GP GAGKTTL+ NL +RF
Sbjct: 11 SYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLI---------NLLMRFY-------- 53
Query: 239 IWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV-RETLDFSGRCLGVGTRY 297
+ G+I G ++ + IS+ L V ++T FSG
Sbjct: 54 ----DPQKGQILIDGIDIRD---------ISRKSLRSMIGVVLQDTFLFSG--------- 91
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL-GLDICADTMVGDE 356
+ E + +P+ + ++A AG D+++KL G DT++G E
Sbjct: 92 ------TIMENIRLGRPNATDEEVIEAAKEAG-----AHDFIMKLPNGY----DTVLG-E 135
Query: 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+S G+++ + ++ K+L++DE ++ +D+ T I + L++++ +I
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIA 195
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
L T D I+++ +G+I+ G D +L
Sbjct: 196 HRLS----TIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
G+SGGQ++R+ L ++LLMDE ++ LD ++T +I M + VT I+ +
Sbjct: 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL---MTDLKKVTTIIIVT 204
Query: 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ + D G +V HGP D +
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 67/274 (24%), Positives = 100/274 (36%), Gaps = 72/274 (26%)
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
LLGP G GKTTL+ LAG F+ + SG I G ++ P
Sbjct: 1 LLGPSGCGKTTLLRLLAG---------FE------------QPDSGSIMLDGEDVTNVPP 39
Query: 262 Q-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDA 320
R + Q MTV E + F K + + P EI
Sbjct: 40 HLRHINMVFQSYALFPHMTVEENVAFG-------------------LKMRKV-PRAEIKP 79
Query: 321 FMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK 380
+ L+L+ L D +SGGQ++RV LV K
Sbjct: 80 RVLEA--------------LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 381 VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQI 440
+LL+DE + LD Q+ LK + + +T + + E + D I ++ +G+I
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKI 179
Query: 441 VYHG-PRDNVLEFFEQMGFKCPERKGVADFLQEV 473
G P E +E+ P VA F+ E+
Sbjct: 180 AQIGTPE----EIYEE-----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 65/274 (23%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---HENLRVRFQSNKFLIIRIWKTEQ 244
+DVS + P + ++G G+GK+TL+ LAG+L H +S L +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL------- 72
Query: 245 ASGKITYCGHELNEFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
Y E RT ++ Q+ M V + R + +G R+
Sbjct: 73 ------YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH------ 120
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
+ A A V +I + D++ R SG
Sbjct: 121 -----------------YGNIRATAQDWLEEV----------EIDPTRI--DDLPRAFSG 151
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
G ++R+ LV +++ MDE + GLD S ++ L+ +V + + +I+
Sbjct: 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV------ 205
Query: 424 ETYD------LFDDIILISEGQIVYHGPRDNVLE 451
T+D L ++++ +G++V G D VL+
Sbjct: 206 -THDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 40/222 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETF 956
+L +S + T ++G+SG+GK+TL +L G G+I ++G+ K T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 957 ARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ Y Q P++ ++ E+LL A K + DE+ E+ ++
Sbjct: 547 RQFINYLPQ----EPYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIK 591
Query: 1014 DALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
D + +P G TE Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 592 DDIENMP--LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKK 649
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
++ + N D +T++ H+ + + + D+++++ G +
Sbjct: 650 IVNNLLNLQD--KTIIFVAHR--LSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYIEGDIKISGYPKKQET 955
L +++ + +TA++G SG GK+T ++++ + G++ +G +
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 956 FARVS-----GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL- 1009
V G Q P ++++++ Y R+ + KK + V++ ++ V L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
++D L + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRL-HTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKKQETFARVSGY 962
RPG + A+MG +G+GK+TL LAGR+ G ++ G P+ + +
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 963 CEQTDIHSPHVT----LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
Q + P V+ L +L R +D + ++E + L+++ D L
Sbjct: 85 --QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE--DLLT- 139
Query: 1019 LPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
VN G S ++KR I V P + +DE SGLD A IV V + D R+
Sbjct: 140 -RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSF 198
Query: 1078 VCTIHQPSI 1086
+ H I
Sbjct: 199 IIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 6e-05
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV----------HIMD 411
SGG K+R+ + L+ ++L++DE ++GLD + + + L+++ HI++
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 412 VTMIVALLQPAPETYDLFDDIILISEGQI 440
E L D + +++ G+I
Sbjct: 157 ------------EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--KQ 953
D ++L VS +TA++G SG GK+T + L +E ++++ G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 954 ETFAR---VSGYCEQTDIHSPH-----VTLYESLLYSAWL-----RLSSDVDTKKRKIFV 1000
+ R ++ Q + P +++Y+++ Y + +L D D + +
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID-DIVESALKD 133
Query: 1001 DEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060
++ + ++ K + AL LS Q++RL IA L P ++ MDEP GLD A+
Sbjct: 134 ADLWDEIKHKIHKSAL-------DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 1061 AIVMRTVRN 1069
V +++
Sbjct: 187 MKVESLIQS 195
|
Length = 261 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
++L ++ + G + A+MG +G+GK+TL V+AG +EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG---------- 70
Query: 959 VSGYCEQTDIHSPHVTLYESLLY---------SAWLRLSSDVDTKKRKI----------F 999
+ H+ ++ + Y + +LRL+ + K + +
Sbjct: 71 -ESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEI 129
Query: 1000 VDEVMELVELKPL---RDALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
++E ++LV + P R+ VN G S ++KR I + + + +DE SGL
Sbjct: 130 INEKLKLVGMDPSFLSRN-------VNEGFSGGEKKRNEILQMALLDSELAILDETDSGL 182
Query: 1056 DARAAAIVMRTVRNTVDTGRTVVCTIH 1082
D A I+ + + + +++ H
Sbjct: 183 DIDALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 51/147 (34%)
Query: 915 ALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970
L+G SG GK+TL ++ G T G EG DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEILFEGK-----------------------DIT- 78
Query: 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030
+ ++R+ V E++E V L + L P + LS QR
Sbjct: 79 -------------------KLSKEERRERVLELLEKVGLPE--EFLYRYP--HELSGGQR 115
Query: 1031 KRLTIAVELVANPSIIFMDEPTSGLDA 1057
+R+ IA L NP +I DEP S LD
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ILK V+ +K + L+GP G+GK+TL + G H V
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEV--------------- 54
Query: 243 EQASGKITYCGHELNE 258
G+I + G ++ +
Sbjct: 55 --TEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 8e-05
Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 62/209 (29%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
V L+D+S V+ L+GP G GK+TL+ +AG
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--------------- 55
Query: 238 RIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
SG++ G + P Y+ Q D +TV + + GV
Sbjct: 56 ------PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV---- 103
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
+ E ++ + ++ V ++G E +
Sbjct: 104 ------PKAEARE------RAEELLELVGLSGFE-----------------------NAY 128
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDE 386
+SGG ++RV L VLL+DE
Sbjct: 129 PHQLSGGMRQRVALARALAVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYPKKQETFARVS 960
VS G + AL+G SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL------KPLRD 1014
Q+ PH+T+ +++ + + R V+E++ LV + KP
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEFAKRKP--- 147
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1073
+ LS QR+R+ +A L P ++ +DEP LD + + V + ++
Sbjct: 148 --------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV 199
Query: 1074 GRTVVCTIHQPSIDIFEAFD---ELLLMKRGGRV-------IYAGPLGRESHKLI 1118
G T V H D EA + +M RG V IY P R S + I
Sbjct: 200 GVTCVMVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250
|
Length = 377 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 57/250 (22%), Positives = 88/250 (35%), Gaps = 80/250 (32%)
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE--- 258
LGP GAGKTT + L ++R SG G+++
Sbjct: 24 FLGPNGAGKTTTIRMLTT----------------LLR-----PTSGTARVAGYDVVREPR 62
Query: 259 -------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQG 311
VPQ ++T RE L+ GR G L + E ++
Sbjct: 63 KVRRSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEER 104
Query: 312 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTT 371
+ +L+L L AD VG SGG ++R+
Sbjct: 105 AEE------------------------LLELFELGEAADRPVG-----TYSGGMRRRLDI 135
Query: 372 GEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431
L+ VL +DE +TGLD T I +++ + VT+++ E L D
Sbjct: 136 AASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDR 193
Query: 432 IILISEGQIV 441
I +I G+I+
Sbjct: 194 IAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 73/268 (27%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
V L D+S V+ + LLGP GAGKTT + + G + +
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD----------------- 53
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
SG++ + G L + + Y+ + + +M V + L + + L
Sbjct: 54 ----SGEVLFDGKPL-DIAARNRIGYLPEERGLYPKMKVIDQLVYLAQ----------LK 98
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
L + E ++ I D L+ L L A+ V +E+
Sbjct: 99 GLKKEEARRRI------------------------DEWLERLELSEYANKRV-EEL---- 129
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD-----VTMIV 416
S G +++V ++ ++L++DE +GLD + LK + I + T+I+
Sbjct: 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV----ELLKDV--IRELARAGKTVIL 183
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHG 444
+ Q +L D ++L+++G+ V +G
Sbjct: 184 STHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D M + +SGG+++RV L K +L+DE G+D + I + ++ H+ D +
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE---HLRDSGL 188
Query: 415 IVALL-QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
V + ET + + ++S+G ++ HG +L
Sbjct: 189 GVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 51/201 (25%), Positives = 73/201 (36%), Gaps = 62/201 (30%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
V+P LLG GAGKTT L G T SG T G
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---------------------TTVTSGDATVAG 2000
Query: 254 HELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQG 311
+ + + Y Q D +T RE L R GV
Sbjct: 2001 KSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV------------------ 2042
Query: 312 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTT 371
P EI+ V ++ ++ LGL + AD + G SGG K++++T
Sbjct: 2043 --PAEEIEK--------------VANWSIQSLGLSLYADRLAGT-----YSGGNKRKLST 2081
Query: 372 GEMLVGAAKVLLMDEISTGLD 392
L+G ++L+DE +TG+D
Sbjct: 2082 AIALIGCPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
V + +LGP GAGK+TL+ +AG F ASG+I G
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAG--------------FE-------TPASGEILING 60
Query: 254 HELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGI 312
+ P +R + + Q + +TV + + LG+ +L AE +REK
Sbjct: 61 VDHTASPPAERPVSMLFQENNLFAHLTVAQNIG-----LGLSPGLKLNAE--QREK---- 109
Query: 313 KPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTG 372
++A V +AG L + +SGGQ++RV
Sbjct: 110 -----VEAAAAQVGLAGFLKRLPGE-----------------------LSGGQRQRVALA 141
Query: 373 EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432
LV +LL+DE + LD + ++ + Q+ +T+++ P + + D +
Sbjct: 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRV 200
Query: 433 ILISEGQIVYHGPRDNVL 450
+ + G+I G +L
Sbjct: 201 VFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D++ R SGG ++R+ LV +++ MDE + GLD S ++ L+ +V + + +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 415 IVALLQPAPETYDLF------DDIILISEGQIVYHGPRDNVLE 451
++ T+DL D ++++ +GQ+V G D VL+
Sbjct: 206 VIV-------THDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-04
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 63/240 (26%)
Query: 893 VGEDRLQ-----LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS 947
+D + LL VS + G LT ++G +G+GK+TL+ L
Sbjct: 663 KTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------------- 708
Query: 948 GYPKKQETFARVSGYCEQTDIHSPHVTLYESLLY---SAWLRLSSDVDTKKRKIFVDE-- 1002
Q +I V S+ Y AW+ + + +F DE
Sbjct: 709 -----------------QFEISEGRVWAERSIAYVPQQAWIM---NATVRGNILFFDEED 748
Query: 1003 ---VMELVELKPLRDALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFM 1048
+ + V + L L L G GL TE Q+ R+++A + AN + +
Sbjct: 749 AARLADAVRVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806
Query: 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
D+P S LDA V+ G+T V HQ + + D ++ + GRV ++G
Sbjct: 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVALGD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 884 MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT 936
E++ D +L +V+ +TAL+G SG GK+T + D++ G +
Sbjct: 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 937 GGYI--------EGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS 988
G+I + + + KK G Q P ++++++ Y LR+
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKK-------VGMVFQKPNPFPK-SIFDNVAYG--LRIH 111
Query: 989 SDVDTKKRKIFVDEVMELVEL-KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047
+ D + V+E ++ L ++D L GLS Q++RL IA + +P +I
Sbjct: 112 GEDDEDFIEERVEESLKAAALWDEVKDKLD--KSALGLSGGQQQRLCIARTIAVSPEVIL 169
Query: 1048 MDEPTSGLD 1056
MDEP S LD
Sbjct: 170 MDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 1e-04
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 989 SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048
S+V +K+ + + + + K + LVG + LS Q++R++IA ++ NP I+ +
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILIL 603
Query: 1049 DEPTSGLDARAAAIVMRTVRN 1069
DE TS LD ++ +V +T+ N
Sbjct: 604 DEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 913 LTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKKQ----------ETFARV 959
+TAL+G SG GK+T + + + G + EG+I + +P E R+
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL--- 1016
S ++ + +++E++ Y +R K+R I + V + L D +
Sbjct: 102 SMVFQKPNPFPK--SIFENVAYGLRIR-----GVKRRSILEERVENALRNAALWDEVKDR 154
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
+G N LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 155 LGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 15/215 (6%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFA 957
L++ S F+ +T ++G +G+GK+T++ + G +TG I GD I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 958 RVS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
R+ G Q + E + + L + +K+ E+++LV+L D
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLVQLP--ED 142
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1073
+ P LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 143 YVKRSP--FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ ++ H + DE+++M G+VI G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIG 233
|
Length = 289 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 38/172 (22%)
Query: 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---------YPKKQET--FARVSG 961
+TA++G SG GK+T + L +EG +K+ G Y + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 962 YCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL----------VELKP 1011
Q P +++YE++ Y +R+S+ K + +DE++E V+ K
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRISA----KLPQADLDEIVESALKGAALWQEVKDKL 144
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+ AL GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 145 NKSAL-------GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 69/283 (24%), Positives = 110/283 (38%), Gaps = 92/283 (32%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+LK +S +K LLG G GK+TL Q L+ R W +Q
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTL---------------LQ----LLTRAWDPQQ 394
Query: 245 ASGKITYCGHELNEF-----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 293
G+I G + ++ V QR ++ T+R+ L
Sbjct: 395 --GEILLNGQPIADYSEAALRQAISVVSQRV--HLFSA-------TLRDNL--------- 434
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
LLA P+ +A ++ + G E L D GL+ +
Sbjct: 435 -----LLA-----------APNASDEALIEVLQQVGLEKLLEDD-----KGLN----AWL 469
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
G E R +SGG+++R+ L+ A +LL+DE + GLD+ T QI + L + H + T
Sbjct: 470 G-EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKT 526
Query: 414 MIV------ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+++ L Q FD I ++ GQI+ G +L
Sbjct: 527 VLMITHRLTGLEQ--------FDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 27/160 (16%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETF 956
++L VS +PG + L+G +GAGK+TL+ V+ G G I+ + K+
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
R+ GY Q ++ L + +LRL KK I ++ V+ L DA
Sbjct: 68 -RI-GYVPQ----KLYLDTTLPLTVNRFLRLRPGT--KKEDIL--PALKRVQAGHLIDA- 116
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 117 ---P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 350 DTMVGDEMRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
DT+VG+ RG +SGG+K+RV ++ +LL+DE ++ LD+ T +I L+ +
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 408 HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+I L T D II++ +G+IV G + +L
Sbjct: 185 KGRTTIVIAHRLS----TIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Query: 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYC 963
G G + ++G +G GKTT + +LAG K E D+K+S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS-Y-KPQYISPDYDGTV 418
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
E LL SA + S + F E+++ + L+ L + V +
Sbjct: 419 ED-------------LLRSA---IRSAFGSSY---FKTEIVKPLNLEDLLERPV-----D 454
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+ SGGQ++R+ L KV+L+DE ++ LD ++ +I + L ++ H M+
Sbjct: 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
Query: 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
LQ A + D + G ++ GP + + F P+++ +D+L
Sbjct: 206 LQQAGR---ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 173 LLHL--VPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQ 230
LL L V D +IL ++S ++ L+ GP G GK+TL+ +A +
Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--------- 57
Query: 231 SNKFLIIRIWKTEQASGKITYCGHELNEFVPQR---TCAYISQHDLHHGEMTVRETLDFS 287
SG + + G +++ P+ +Y +Q G+ TV + L F
Sbjct: 58 ------------SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP 104
Query: 288 GRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347
+++ + +PDP F+ + +++T + +L
Sbjct: 105 ---------WQI----------RNQQPDP--AIFLDDLERFALPDTILTKNIAEL----- 138
Query: 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS 394
SGG+K+R++ L KVLL+DEI++ LD S
Sbjct: 139 --------------SGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 913 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYPKKQETFARVSGYCE 964
+TA++G SG GK+T + D++ T G + D + I G + + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 965 QTDIHSPHVTLYESLLYSAWL-------RLSSDVDTKKRKIFV-DEVMELVELKPLRDAL 1016
Q P ++++++ Y L +L V+ RK + DEV + ++ ++AL
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD----KNAL 181
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 1024 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 1080 TIHQPSIDIFEAFDELLLMKR 1100
H P ++ E D+L+ +K+
Sbjct: 137 ITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKKQETFARVSGYC 963
G+ + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEGTV 78
Query: 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023
LL S + F E+ + ++++ + D V
Sbjct: 79 RD-------------LLSSITKDFYTH------PYFKTEIAKPLQIEQILDREV-----P 114
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR--VSGYCEQT 966
G A++G SGAGK+TL++++AG T G + ++G +R VS ++
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 967 DIHSPHVTLYE--SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024
++ H+T+ + L + L+L++ K I + D L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAI--------ARQMGIEDLLARLPG--Q 129
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 136 IEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVK 195
IEV +LS V+ L I S L K R+V+ LK +S ++
Sbjct: 1 IEV--SNLSKSYRVYSKEPGL----------IGSLKSLFK---RKYREVEALKGISFTIE 45
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222
+ +GP GAGKTT + L+G L
Sbjct: 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 51/199 (25%), Positives = 68/199 (34%), Gaps = 63/199 (31%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
V L+ G GAGKTTL+ LAG LH SG+I G
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---------------------SGQIQIDG 72
Query: 254 HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIK 313
R AY+ +++ E L F L RR KQ
Sbjct: 73 KTATRGDRSRFMAYLGHLPGLKADLSTLENLHF------------LCGLHGRRAKQ---- 116
Query: 314 PDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGE 373
M A+A ++GL DT+V R +S GQKKR+
Sbjct: 117 --------MPGSALA-------------IVGLAGYEDTLV-----RQLSAGQKKRLALAR 150
Query: 374 MLVGAAKVLLMDEISTGLD 392
+ + A + L+DE LD
Sbjct: 151 LWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 65/271 (23%), Positives = 110/271 (40%), Gaps = 75/271 (27%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D L ++ V+P L+GP GAGK+TL FQ L++R +
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTL---------------FQ----LLLRFY-- 390
Query: 243 EQASGKITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
+ SG+I G +L + P R + D +V E + + GR
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRY-GR----------- 438
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
PD D ++A A A ++ L DT +G+ RG
Sbjct: 439 -------------PDAT-DEEVEAAARAAHAHEFIS-------ALPEGYDTYLGE---RG 474
Query: 361 I--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ-MVHIMDVTMIVA 417
+ SGGQ++R+ ++ A +LL+DE ++ LD+ + + + L+ M T+I+A
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIA 532
Query: 418 ----LLQPAPETYDLFDDIILISEGQIVYHG 444
+ A D I+++ +G+IV G
Sbjct: 533 HRLATVLKA-------DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 1019 LPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
L VN G S ++KR I L+ P + +DEP SGLD A +V + + G++V
Sbjct: 98 LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEA 1123
+ H + + D + ++ GR++ +G +L E
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-04
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031
++++YE++ + DV + +DE +E L D VG P LS Q++
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVG-PYGKSLSGGQKQ 1365
Query: 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1083
R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 69/208 (33%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 951
Q+L ++ +TA +G SG GK+T + D + K ++G++ I G
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDG--- 71
Query: 952 KQETFARVSGYCEQTDIHSPHV---------------------TLYESLLYSAWLRLSSD 990
D++S ++Y+++ Y +L
Sbjct: 72 --------------IDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGP--KLHGL 115
Query: 991 VDTKKRKIFVDEVME--------LVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVA 1041
KK+ +DE++E EL L+D+ L G Q++RL IA +
Sbjct: 116 AKNKKK---LDEIVEKSLTSVGLWEELGDRLKDSAFELSG------GQQQRLCIARAIAV 166
Query: 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
P+++ MDEP S LD A ++ ++
Sbjct: 167 KPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKKQ 953
D L+ + +S R G L+G SG+GK+TL G I +G+I+ G
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 954 ETFARVSGYCEQTDI--------HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVME 1005
+ + + + SP +T+ ++ + +R V E +E
Sbjct: 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEALE 411
Query: 1006 LVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
V L P P + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 412 EVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKKQ------ 953
+V+ R + +L+G +GAGKTT+ + L G + TGG I + I G P Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 954 -ETFARVSGYCEQTDIHSPHV--------TLYESLLYSAWLRLSSDVDTKKRKIFVDEVM 1004
TF V + E T I + V L+ LL + R ++ + R E +
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR-RAESEALDRAATWLERV 141
Query: 1005 ELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
L+E R A L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 142 GLLEHAN-RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 22/215 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L + G + AL+G +GAGK+TLM ++AG G ++I G P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAH 84
Query: 961 GY----CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL-VELKPLRDA 1015
Q + P++++ E++L+ L + ++ + L +L D+
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK--MKQLLAALGCQLDL--DS 136
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
G L R+ + I L+ + I+ +DEPT+ L + +R + G
Sbjct: 137 SAGS-----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191
Query: 1076 TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
+V H+ +I + D + +M R G + +G
Sbjct: 192 GIVFISHKLP-EIRQLADRISVM-RDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 62/233 (26%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
V++L+D++ V+ +LGP G GK+TL+ +AG
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-------------------- 54
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG++ G + P Y+ Q D +TV + +
Sbjct: 55 -PTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALG--------------- 96
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
++ + E +L+L+GL D +S
Sbjct: 97 -------------------LELRGKSKAEARERAKELLELVGLAGFEDKYPHQ-----LS 132
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
GG ++RV L K+LL+DE LD+ T ++ L ++ T++
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 54/225 (24%), Positives = 83/225 (36%), Gaps = 57/225 (25%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L D+S V P + +L+GP GAGKTTLM + G KT
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG---------------------KTRPQE 59
Query: 247 GKITYCGHE----LNEF-VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
G++ + G L E + + Q +TVRE L+ L + + A
Sbjct: 60 GEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE-----LALNRDKSVFA 114
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
L R + E D +L +GL D + +
Sbjct: 115 SLFARLRA---------------------EERRRIDELLATIGLGDERDRLAAL-----L 148
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
S GQK+ + G +L K+LL+DE G+ + T + + LK +
Sbjct: 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193
|
Length = 249 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 58/277 (20%), Positives = 110/277 (39%), Gaps = 66/277 (23%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
P K+ L+ +S ++ ++GP G+GK+TL + G
Sbjct: 327 PGGKKP--TLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG------------------ 366
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 294
IW SG + G +L ++ + + Y+ Q D+ TV E +
Sbjct: 367 -IWPP--TSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENI---------- 412
Query: 295 TRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMV 353
R+ + + + ++A +AG V + +L+L G D T++
Sbjct: 413 ARFG---------------ENADPEKIIEAAKLAG-----VHELILRLPDGYD----TVI 448
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
G +SGGQ++R+ L G K++++DE ++ LD + + +
Sbjct: 449 GPG-GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL---ANAIKALKARG 504
Query: 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+ V ++ P D I+++ +G+I G RD VL
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 324 AVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLL 383
A+ V E + + L +GLD D+ + + G+SGGQK+RV +L ++L+
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 384 MDEISTGLD---SSTTFQICKFLKQ-------MVHIMDVTMIVALLQPAPETYDLFDDII 433
DE + GLD Q+ K + H M+ + VA D++I
Sbjct: 200 FDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVA------------DEVI 247
Query: 434 LISEGQIVYHG 444
++ +G+I+ G
Sbjct: 248 VMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+LH +S P ++G +GAGK+++++ L + +G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGL--- 1305
Query: 960 SGYCEQTDIHSPHVTLYES-LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALV 1017
TD+ + +S +L+S +R + D ++ + E +E +K +
Sbjct: 1306 ------TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 1018 GL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQ 953
++ + +S R G A++G +G+GK+TL +LAG IE G++ I +P
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGELLIDDHPLHF 79
Query: 954 ETFARVSGYCEQTDIHSPHVTLYE----SLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
++ S + P +L S + LRL++D++ ++R+ + E + V L
Sbjct: 80 GDYSYRS-QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL 138
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
P D P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 139 LP--DHASYYP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 49/213 (23%), Positives = 77/213 (36%), Gaps = 74/213 (34%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L D+S V P + +++GP GAGKTT+M + G KT
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG---------------------KTRPDE 56
Query: 247 GKITYCGHELNEFVPQRTCAYISQHDL-HHG------------EMTVRETLDFSGRCLGV 293
G + + G +L + +H + G +TV E L+ +
Sbjct: 57 GSVLFGGTDL---------TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA-LPRDK 106
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
L LS EK + + VL+ +GL AD +
Sbjct: 107 SVFASLFFRLSAEEKDR-------------------------IEEVLETIGLADEADRLA 141
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDE 386
G +S GQK+ + G +L+ K+LL+DE
Sbjct: 142 GL-----LSHGQKQWLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 45/221 (20%), Positives = 73/221 (33%), Gaps = 78/221 (35%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKF 234
++ +LKD+S + ++GP GAGK+TL+ LAG+L
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL------------- 372
Query: 235 LIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 294
SG + G + Y Q H E+ +T
Sbjct: 373 --------GPLSGTVK-VGETVK-------IGYFDQ---HRDELDPDKT----------- 402
Query: 295 TRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVG 354
+L ELS + V Y L G G
Sbjct: 403 ----VLEELSEGFPDGDEQE--------------------VRAY-LGRFGFT-------G 430
Query: 355 DEMRRGI---SGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
++ + + SGG+K R+ ++L+ +LL+DE + LD
Sbjct: 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ +RV +L +VL++DE + GLD ++ + + + ++V L
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNV---LEFFEQMGFKCPERKGVADFLQE 472
+ D D + L+ +G I+ G +V ++F + P+ AD LQ+
Sbjct: 205 --DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 69/274 (25%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
DV +LK ++ + P + L+GP G+GK+T+ L +NL +Q
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL-----QNL---YQPT---------- 534
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G++ G L ++ Y+ + G+ E + FSG R +
Sbjct: 535 ---GGQVLLDGVPLVQY----DHHYLHRQVALVGQ----EPVLFSG-----SVRENIAYG 578
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
L+ PD EI A KA Y DT VG E +S
Sbjct: 579 LTD-------TPDEEIMAAAKAANAHDFIMEFPNGY-----------DTEVG-EKGSQLS 619
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV-----A 417
GGQK+R+ LV +VL++DE ++ LD+ + + L++ T+++ +
Sbjct: 620 GGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESRSRASRTVLLIAHRLS 675
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
++ A D I+++ +G +V G ++E
Sbjct: 676 TVERA-------DQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQK+RV +L ++++ DE ++ LD +I K + + T+I
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISI--- 199
Query: 421 PAPETYD-----LFDDIILISEGQIVYHGPRDNVL---EFFEQMGFKCPERKGVADFLQE 472
T+D L D +I+ SEG+++ G +L E E+ P ++ L+
Sbjct: 200 ----THDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKG 255
Query: 473 VTSKKDQEQ 481
+ ++E+
Sbjct: 256 IDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-04
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970
G L A++G +G GKT+L+ + G + + + G + +
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGE--------------LSHAETSSVVIRG----SVAYV 684
Query: 971 PHVTLYESLLYSAWLR----LSSDVDTKK--RKIFVDEVMELVELKPLRDAL-VGLPGVN 1023
P V S +++A +R SD ++++ R I V + ++L P RD +G GVN
Sbjct: 685 PQV----SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVN 740
Query: 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
+S Q++R+++A + +N I D+P S LDA A V + G+T V +Q
Sbjct: 741 -ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ 799
Query: 1084 PSIDIFEAFDELLLMKRG 1101
+ D ++L+ G
Sbjct: 800 --LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 1000 VDEVMELV------ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053
V+E +ELV E +P R LS Q++R+ IA + P II +DE TS
Sbjct: 121 VNEALELVGMQDFKEREPAR-----------LSGGQKQRVAIAGAVAMRPKIIILDEATS 169
Query: 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
LD +++T++ D TV+ H +D D +L+MK G
Sbjct: 170 MLDPEGRLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 29/225 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L +S G ++G +GAGK+TL+ ++AG + T G +K++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
V+ E P +T E++ + + + ++ VDE++E EL D
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK---VDEIIEFAELGDFID---- 142
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
P V S+ RL +V P I+ +DE + DA + + V+ +T+V
Sbjct: 143 QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 1079 CTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEA 1123
H I + D + ++ G++ G ++I +E
Sbjct: 202 LVSHDLGA-IKQYCDRAIWLEH-GQIRMEG----SPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKKQET 955
+LH ++ + +TA +G SG GK+T + + L G EG+I G + +
Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK- 154
Query: 956 FARVSGYCEQTDI----HSP---HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
++S +T I P +++++++ Y R + D K + V++ ++
Sbjct: 155 --KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAA 210
Query: 1009 L-KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
L ++D L N LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 211 LWDEVKDDLD--KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 36/180 (20%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKKQETFA 957
Q++ + G L+G SG GK+TL+ ++AG + I G+I I G
Sbjct: 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG--------- 65
Query: 958 RVSGYCE--QTDIHS--------PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV 1007
RV E DI PH+++ E++ Y +R + ++R V E ++
Sbjct: 66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARIL 122
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 1065
EL+PL D P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 123 ELEPLLDRK---P--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
DT + + + R SGG+++R+ +L+ A ++L+DE + GLD T Q+ + +++
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHG 444
+ I L + D I+ + G+I+ G
Sbjct: 148 KTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 894 GEDRLQL-------LHSVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYIEGDI 944
GE RL++ ++ VS R G + + G+ GAG+T LM VL A +T GY+ D
Sbjct: 254 GEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313
Query: 945 KISGYPKKQETFARVSGYCEQTDIHSPHV---TLYESLLYSAWLRLSSD---VDTKKRKI 998
Q+ A Y + V ++ E++ +A S + +
Sbjct: 314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ 373
Query: 999 FVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
V + + L +K P + +GL LS ++++ IA L+ P ++ +DEPT G+D
Sbjct: 374 AVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
Query: 1058 RA 1059
A
Sbjct: 429 GA 430
|
Length = 501 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKKQETF 956
+ ++S RPG L+G SG+GK+T L+ ++ + G+I G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 957 ARVSGYCEQTDI--HSPHVTLYESL----LYSAWLRL-SSDVDTKKRKIFVDEVMELVEL 1009
++ + + P+ +L L + LR+ + +R+ V VME V L
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL 414
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
P + P S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 415 DP--ETRHRYPA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 1016 LVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
LVGL LS Q++R+ +A L P + DEPT+GLD + ++ N
Sbjct: 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210
Query: 1070 TVDTGRTVVCTIH 1082
G+T++ H
Sbjct: 211 LNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YIEGDIKISGY 949
E ++ L VS G A++G SG GK+TL + + TGG Y +G +
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKA 82
Query: 950 PKKQETFARVSGYCEQTDIHSPHVTLYESL--------LYSAWLRLSSDVDTKKRKIFVD 1001
+ + R Q +P Y SL + L +++ + +R+
Sbjct: 83 DPEAQKLLRQK---IQIVFQNP----YGSLNPRKKVGQILEEPLLINTSLSAAERREKAL 135
Query: 1002 EVMELVELKP---LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
+M V L+P R P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 136 AMMAKVGLRPEHYDR-----YPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 62/280 (22%), Positives = 108/280 (38%), Gaps = 67/280 (23%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKF 234
+R IL +S + + ++G GAGK+T++
Sbjct: 269 SFAYDPRR--PILNGISFTIPLGKTVAIVGESGAGKSTIL-------------------R 307
Query: 235 LIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 294
L+ R + SG IT G ++ + Q I + ++T+ F+
Sbjct: 308 LLFRFYDVN--SGSITIDGQDIRDVTQQSLRRAIG--------IVPQDTVLFND------ 351
Query: 295 TRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVG 354
T + R E+ A +A + SL Y DT VG
Sbjct: 352 TIAYNIKY--GRPDAT----AEEVGAAAEAAQIHDFIQSLPEGY-----------DTGVG 394
Query: 355 DEMRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412
+ RG +SGG+K+RV ++ +L++DE ++ LD+ T I L++ V
Sbjct: 395 E---RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAGRT 450
Query: 413 TMIVA--LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
T+++A L T D+II++ G+IV G + +L
Sbjct: 451 TLVIAHRL-----STIIDADEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 15/207 (7%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV--SG 961
VS + R G + + G+ GAG+T L+ L G G + EG++ I+G P A+ +G
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAG 337
Query: 962 YC---EQTDIHS--PHVTLYESLLYSAWLRLS--SDVDTKKRKIFVDEVMELVELKPLRD 1014
E H P + + +++ S +D + ++ +++K
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT--- 394
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1074
A LP + LS +++ +A L+ NP ++ +DEPT G+D A + + + G
Sbjct: 395 ASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453
Query: 1075 RTVVCTIHQPSIDIFEAFDELLLMKRG 1101
++ + ++ D +L++ G
Sbjct: 454 VAII-VVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 7e-04
Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 43/255 (16%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRF---QSNKFLIIRI 239
+V I KD++ + T ++G G+GK+T+M +L +RF +++ ++ +
Sbjct: 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM---------SLLMRFYDLKNDHHIVFKN 1230
Query: 240 WKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV------RETLDFSGRC--- 290
T + + Y G E + + + GE + + LD C
Sbjct: 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYN 1290
Query: 291 -------LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQET---SLVTDYVL 340
+ ++ +L +S E + K D + +A A + SL Y
Sbjct: 1291 LKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKY-- 1348
Query: 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQIC 400
DT VG + +SGGQK+R+ L+ K+LL+DE ++ LDS++ I
Sbjct: 1349 ---------DTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398
Query: 401 KFLKQMVHIMDVTMI 415
K + + D T+I
Sbjct: 1399 KTIVDIKDKADKTII 1413
|
Length = 1466 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 276 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGI---KPDPEIDAFMKAVA----VA 328
G + V +DF G+ + Y+ ++R +Q G+ +P+P + + VA ++
Sbjct: 61 GPVKVEGVVDFFGQNI-----YDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRIS 115
Query: 329 GQETSLVTDYVLKLLGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGAAKVLLMD 385
+ D +++ V D++ + G+SGGQ++R+ L KVLLMD
Sbjct: 116 AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 386 EISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDL 428
E + LD T ++ + + + + + ++ +Q A D
Sbjct: 176 EPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDF 218
|
Length = 259 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 46/233 (19%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKK 952
+ +L +S + G AL+G +G GK+TL+ +L T + +G+I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-- 403
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESL--------LYSAWLR----LSSDVDTKKRKIFV 1000
++ Y E L +++ L+SA LR L++ + + I
Sbjct: 404 ------IADYSEAA--------LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI-- 447
Query: 1001 DEVMELVELKPLRDALVGLP---GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
EV++ V L+ L + GL G G LS +++RL IA L+ + ++ +DEPT GL
Sbjct: 448 -EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506
Query: 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
DA ++ + +TV+ H+ + E FD + +M G++I G
Sbjct: 507 DAETERQILELLA-EHAQNKTVLMITHR--LTGLEQFDRICVMD-NGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGY 949
+ ++ +S +TAL+G SG GK+T + D++ ++ G I EG + I
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDS 93
Query: 950 PKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
R G Q P ++Y ++ ++ L+ + + +RK +DE++E
Sbjct: 94 NINVVNLRREIGMVFQKPNPFPK-SIYNNITHA--LKYAGE----RRKSVLDEIVEESLT 146
Query: 1010 KP-----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
K ++D L LS Q++RL IA L P+++ +DEP S LD
Sbjct: 147 KAALWDEVKDRL--HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 23/190 (12%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YIEG-DIKISGYP----KKQE 954
+S + G + G+ G+G+T LM+ L G R G + G DI P KK
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS-PLDAVKKGM 340
Query: 955 TFA----RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
+ R +G+ I + ++ + SL + + + EL+ LK
Sbjct: 341 AYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 1011 --PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
+ + L G N Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1069 NTVDTGRTVV 1078
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT 396
L +LGL+ + D + +SGG+KKRV ++ +VL++DE + GLD
Sbjct: 119 SSALHMLGLE-----ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
Query: 397 FQICKFLKQMVHIMDVTMIVAL--LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFE 454
++ FL + +T+I + L PE + D I ++ +G+IV +G V E F
Sbjct: 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPE---MADYIYVMDKGRIVAYG---TVEEIFL 227
Query: 455 Q 455
Q
Sbjct: 228 Q 228
|
Length = 277 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 70/262 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LK++S +KP ++G G+GK++L+LAL R+ E +
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-------FRL--------------VELS 57
Query: 246 SGKITYCGHELNEFVPQ--RTC-AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG I G ++++ R+ + I Q D T+R LD G
Sbjct: 58 SGSILIDGVDISKIGLHDLRSRISIIPQ-DPVLFSGTIRSNLDPFGEY------------ 104
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
D E+ ++ V + ++V L G DT+V +E +S
Sbjct: 105 -----------SDEELWQALERVGLK--------EFVESLPGGL---DTVV-EEGGENLS 141
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI-VA--LL 419
GQ++ + L+ +K+L++DE + +D T I K +++ D T++ +A L
Sbjct: 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRL- 198
Query: 420 QPAPETYDLFDDIILISEGQIV 441
+T D I+++ +G++V
Sbjct: 199 ----DTIIDSDRILVLDKGRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGG----YIEGDIKISGYPKKQETFARVSGYCEQT 966
G TA++G +G GK+TL+ L+ T +++G+ I Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE-HIQHYASKE--VARRIGLLAQN 89
Query: 967 DIHSPHVTLYESL---------LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
+T+ E + L++ W + + V + M+ + L D
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEA--------VTKAMQATGITHLADQ-- 139
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 140 ---SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 297 YELLAELSRREKQQGIKPDPEIDAFMKAVA--------VAGQETSLVTDYVLKLLGL-DI 347
Y + E RR +P+P + M V V +E V L +GL D
Sbjct: 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
D + R +SGGQ++ + L +VLL+DE ++ LD +TT +I +F++ +
Sbjct: 153 VKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 408 HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+ V ++ L A + D L +G++V GP + +
Sbjct: 211 DRLTVIIVTHNLAQAAR---ISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 56/188 (29%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
+ + + F +TAL+G SG+GK+T + L + I+ AR
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL--NRMNDTIDI--------------AR 77
Query: 959 VSG--YCEQTDIHSPHVTLYE-----------------SLLYSAWLRLSSDVDTKKRKIF 999
V+G DI+ + +YE S+ + L K+ +
Sbjct: 78 VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVL- 136
Query: 1000 VDEVMELVELKPLRDALV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048
DE++E L+ A + L LS Q++RL IA + P I+ M
Sbjct: 137 -DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLM 187
Query: 1049 DEPTSGLD 1056
DEP S LD
Sbjct: 188 DEPASALD 195
|
Length = 267 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
+L DVS ++ + LLGP G+GK+TL+ +AG
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 176 LVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
V + ++ ILK V +VK ++GP G+GK+TL+ LAG
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
|
Length = 228 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 68/289 (23%), Positives = 109/289 (37%), Gaps = 70/289 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
+ +++ + +L+GP G+GKTT M +I R+ E S
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMK-------------------MINRL--IEPTS 55
Query: 247 GKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
G+I G ++ E P +R Y+ Q MTV E + +LL
Sbjct: 56 GEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN---------IALVPKLLKWP 106
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
+ +++ D +L L+GLD D +SG
Sbjct: 107 KEKIRER-------------------------ADELLALVGLD---PAEFADRYPHELSG 138
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
GQ++RV L +LLMDE LD T Q+ + K++ + T IV +
Sbjct: 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT-IVFVTHDID 197
Query: 424 ETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQE 472
E + L D I ++ G+IV G D +L + P VA+F+
Sbjct: 198 EAFRLADRIAIMKNGEIVQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 69/284 (24%), Positives = 107/284 (37%), Gaps = 96/284 (33%)
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
V+ L VS V+P + LLG GAGK+TLM L+G +
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD------------------- 61
Query: 244 QASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE---LL 300
SG+I G + F + R+ L G+ T ++ L+
Sbjct: 62 --SGEILIDG-KPVAF------------------SSPRDALA-----AGIATVHQELSLV 95
Query: 301 AELS-------RREKQQGIKPDPEID-AFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352
LS RE + ID M+ A +L LGLDI DT+
Sbjct: 96 PNLSVAENIFLGREPT---RRFGLIDRKAMRRRARE----------LLARLGLDIDPDTL 142
Query: 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT---FQICKFLKQ---- 405
VGD +S Q++ V L A+VL++DE + L T F + + LK
Sbjct: 143 VGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVA 197
Query: 406 MV---HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPR 446
++ H +D E +++ D I ++ +G++V P
Sbjct: 198 IIYISHRLD------------EVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 66/225 (29%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
L+D++ ++ + ++LGP G GKTTL+ +AG F
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG---------FV------------PYQ 54
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
G IT G + +R + Q++ G + R D + G + LA + +
Sbjct: 55 HGSITLDGKPVEGPGAER--GVVFQNE---GLLPWRNVQD----NVAFGLQ---LAGVEK 102
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR--GISG 363
++ + +A Q +LK +GL+ G E R +SG
Sbjct: 103 MQRLE----------------IAHQ--------MLKKVGLE-------GAEKRYIWQLSG 131
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408
GQ++RV L ++LL+DE LD+ T Q+ L ++
Sbjct: 132 GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176
|
Length = 255 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 330 QETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEIST 389
+E +LV D + K+ + D + + + +SGGQ++R+ L K+LL+DE ++
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTS 171
Query: 390 GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449
LD ++ I + LK++ H + + M+ +Q D G+++ G
Sbjct: 172 ALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADY---TAFFHLGELIEFGESK-- 226
Query: 450 LEFFE 454
EFFE
Sbjct: 227 -EFFE 230
|
Length = 246 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 71/223 (31%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+L +++ V+P L+ G GAGKT+L+ ALAG +W
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG-------------------LWPW--G 446
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
SG+I+ F+PQR Y+ Q L
Sbjct: 447 SGRISMPADSALLFLPQRP--YLPQGTL-------------------------------- 472
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR--RGISG 363
++ P+ D + LV VL +GL A+ + +E R R +SG
Sbjct: 473 --REALCYPNAAPDF---------SDAELVA--VLHKVGLGDLAERL-DEEDRWDRVLSG 518
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
G+++R+ +L+ K + +DE ++ LD T ++ + LK+
Sbjct: 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561
|
Length = 604 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 29/243 (11%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE 954
E + L+ VS + G +++G +G+GK+T ++ G EG +KI G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 955 TF----ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL- 1009
++ + D T+ + + + + + KR VDE + V +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNML 131
Query: 1010 -----KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
+P R LS Q++R+ +A + P II +DE TS LD +M
Sbjct: 132 DFKTREPAR-----------LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP--LGRESHKLIEYFE 1122
R + + + V +I +D + D +L+MK G + A P L S ++E
Sbjct: 181 RVIHEIKEKYQLTVLSITH-DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGL 239
Query: 1123 AVP 1125
VP
Sbjct: 240 DVP 242
|
Length = 277 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 998 IFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 1055
I++D E + + L L+ + G S RL +A+ L P ++ +DE TS L
Sbjct: 34 IYID--GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLL 91
Query: 1056 DARAAAIVMRTVRNTVD------TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106
DA A+++ + TV+ T + LL +R R I
Sbjct: 92 DAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD-----LGPALLRRRFDRRIV 143
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221
P + L++GPPG+GKTTL ALA +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAREL 26
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKK------ 952
L +++ G AL+G SG+GK+T+ ++L T Y EG+I + G+ +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 953 -QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ A VS ++H + T+ ++ Y+ + S + + + + M+ +
Sbjct: 415 LRNQVALVS-----QNVHLFNDTIANNIAYARTEQYSREQIEEAAR--MAYAMDFIN--K 465
Query: 1012 LRDALVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
+ + L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-D 524
Query: 1070 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+ RT + H+ S E DE+L+++ G
Sbjct: 525 ELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 36/218 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L+ ++ + G L A++G G GK++L+ L +EG + + G V+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG---------SVA 702
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL---- 1016
+Q I + +L E++L+ L + + +V+E L P + L
Sbjct: 703 YVPQQAWIQND--SLRENILFGKALN----------EKYYQQVLEACALLPDLEILPSGD 750
Query: 1017 ---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--V 1071
+G GVN LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 751 RTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+T + H I D +++M GG++ G
Sbjct: 810 LKNKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 13/212 (6%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFA 957
L +++ + G ++G +G+GK+TL L G + G + I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
V + + T+ E L + ++ +KR VD + + L+ R
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYRHR-- 132
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
LS Q + + +A L P + DE TS LD + V+ ++ + G+T+
Sbjct: 133 ---SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTI 189
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
V H +++ D +++M RG V+ P
Sbjct: 190 VYITH--NLEELHDADRIIVMDRGKIVLEGEP 219
|
Length = 274 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 62/178 (34%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970
G +TAL+G SG GK+T++ L + IEG + G RV + TD++
Sbjct: 39 GKVTALIGPSGCGKSTVLRSL--NRMNDLIEG-CSLKG---------RV--LFDGTDLYD 84
Query: 971 PHV---------------------TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
P V ++YE++ + A R++ + ++ ELVE
Sbjct: 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGA--RING---------YTGDMDELVE- 132
Query: 1010 KPLRDALV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
+ LR A V G LS Q++RL IA + P +I MDEP S LD
Sbjct: 133 RSLRKAAVWDECKDKLNESG----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 41/181 (22%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKKQETFAR 958
+ VS R G + + G+ G G+T L + L G + G+I + G ++ A
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAI 73
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE-VMELVELKPLRDALV 1017
+G +V E D K+ + +D V E + L L
Sbjct: 74 RAGIA--------YVP--E--------------DRKREGLVLDLSVAENIALSSL----- 104
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
L G N Q+K + +A L +P ++ +DEPT G+D A A + R +R D G+ V
Sbjct: 105 -LSGGN-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV 157
Query: 1078 V 1078
+
Sbjct: 158 L 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 17/210 (8%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY--PKKQET 955
L+ V+ + G A++G +G+GK+TL+ L G + T G + G+ I+ KK +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYS--AWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
+ G Q P L+E + + ++ V + K E++ELV L
Sbjct: 83 LRKKVGIVFQF----PEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-- 136
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1072
+ L P LS Q +R+ IA L P ++ +DEPT+GLD + +M + +
Sbjct: 137 ELLARSP--FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
G T V H D D++++M +G
Sbjct: 195 KGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK--QMVHIMDVTMIVALL 419
SGGQ++RV L +L+ DE +T LD + QI LK Q M + I
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI---- 214
Query: 420 QPAPETYDL------FDDIILISEGQIVYHGPRDNVLE 451
T+DL D + ++ G+IV G + +
Sbjct: 215 -----THDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 340 LKLLGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT 396
++L+GLD ++R +SGGQK+RV +L L+ DE + GLD
Sbjct: 149 IELVGLDE-------SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGV 201
Query: 397 FQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI-------ILISEGQIVYHGPRDNV 449
+I + + + T+I+ T+DL D++ I +G+I+ G ++
Sbjct: 202 KEILEIFDNL-NKQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDGDTYDI 252
Query: 450 LE 451
L
Sbjct: 253 LS 254
|
Length = 305 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
+SGGQ++R+ +L +V+LMDE + LD +T +I + ++++ + ++ +
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNM 206
Query: 420 QPAPETYD-----LFDDIILISEGQIVYHGPRDNVLE 451
Q A D L D++ ++ PRD E
Sbjct: 207 QQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTE 243
|
Length = 251 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 884 MPAEMKTEGVG--EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGG 938
M ++K GV + Q+L +++ F +TA++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 939 YIEGDIKISG---YPKKQETF---ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992
+EG + + Y + RV +Q + ++++++ + + L +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK--SIFDNVAFGPRM-LGTTAQ 117
Query: 993 TKKRKIFVDEVMELVELKPLRDAL--VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050
++ ++ + + ++D L GL LS Q++RL IA L P +I MDE
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEVILMDE 173
Query: 1051 PTSGLD 1056
P S LD
Sbjct: 174 PCSALD 179
|
Length = 251 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 52/225 (23%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------- 953
L +V+ +PG + + G +G+GK+TL+ ++ ++ EGDI+ P +
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFV-------DEVMEL 1006
A VS QT L+S DT I + E+ +
Sbjct: 389 SRLAVVS----QT-----------PFLFS---------DTVANNIALGRPDATQQEIEHV 424
Query: 1007 VELKPLRDALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
L + D ++ LP G G LS Q++R++IA L+ N I+ +D+ S +D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
Query: 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
R ++ +R + GRTV+ + H+ S + EA E+L+M+ G
Sbjct: 485 RTEHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 901 LHSVSGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKKQETFA 957
L G G V+ + G +G GKTT +LAG G ++ ++KIS Y K Q
Sbjct: 355 LEVEGGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQYIKP 411
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
T+ + LL S L S + E+++ ++L+ L D V
Sbjct: 412 ------------DYDGTVED-LLRSITDDLGS-------SYYKSEIIKPLQLERLLDKNV 451
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 22/218 (10%)
Query: 892 GVGEDRLQ--LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949
GV + ++ +L +++ +PG + A++G SGAGKTTL+ ++ G + G E SG
Sbjct: 388 GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK 447
Query: 950 PKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
+ + E YE + + +K + E++
Sbjct: 448 VEVPKNTVSALIPGE-----------YEPEFGEV--TILEHLRSKTGDLNAAV--EILNR 492
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
L DA++ + LST Q++R +A L P+++ +DE + LD A V R +
Sbjct: 493 AGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552
Query: 1070 TV-DTGRTVVCTIHQPSIDIFEAF--DELLLMKRGGRV 1104
+ G T++ H+P ++ A D L+L+ G
Sbjct: 553 LAREAGITLIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 55/229 (24%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
K D IL D++ ++ +M ++G G+GK+TL L + G L +F S + +
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTL-LNIIGLLE-----KFDSGQVYL--- 57
Query: 240 WKTEQASGKITYCGHELNEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
+ ++F +R Y+ Q+ TV E LD LG+
Sbjct: 58 ----NGQETPPLNSKKASKF--RREKLGYLFQNFALIENETVEENLD-----LGL----- 101
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
+LS++EK++ K L+ +GL++ + +
Sbjct: 102 KYKKLSKKEKREKKK------------------------EALEKVGLNLKLKQKIYE--- 134
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
+SGG+++RV ++ ++L DE + LD ++ L ++
Sbjct: 135 --LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
LKD+S VK LLGP G GKTTL+ +AG
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
G+SGGQ++R+ L +V+LMDE ++ LD T +I ++++ V ++ +
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNM 259
Query: 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
Q A D + ++ G++V + D + F+ PE + V D++
Sbjct: 260 QQAARISD--QTAVFLTGGELVEYDDTDKI--------FENPESQRVEDYI 300
|
Length = 305 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQK+RV ++ K+L++DE + GLD +I +K++ H + M + L+
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL-H-KEYNMTIILVS 202
Query: 421 PAPE-TYDLFDDIILISEGQIVYHGPRDNV---LEFFEQMGFKCPE 462
+ E L D II++++G+ G V +E E +G P+
Sbjct: 203 HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 62/270 (22%), Positives = 109/270 (40%), Gaps = 71/270 (26%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
LK V+ ++ L+G G GK+TL+ ++G + S
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL---------------------AQPTS 39
Query: 247 GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 306
G + G ++ E P R + + L +TVRE + + + L +LS+
Sbjct: 40 GGVILEGKQITEPGPDRMVVFQNYSLLPW--LTVRENIALAVDRV--------LPDLSKS 89
Query: 307 EKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQK 366
E++ + + + L+GL AD G +SGG K
Sbjct: 90 ERRA------------------------IVEEHIALVGLTEAADKRPGQ-----LSGGMK 120
Query: 367 KRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426
+RV L KVLL+DE LD+ T + + L Q+ VT+++ T+
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------TH 173
Query: 427 DLFDDIILISEGQIVY--HGPRDNVLEFFE 454
D+ D+ +L+S+ ++V +GP N+ + E
Sbjct: 174 DV-DEALLLSD-RVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 948
++L V+ + G + ALMG +G+GK+TL + G EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG 63
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 31/219 (14%)
Query: 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKKQETFARV 959
S A G + +MG+SG+GK+T++ +L T G I+G DI + +E +
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
Q+ PH+T+ ++ + + L+ ++R+ +D + ++ L +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFG--MELAGINAEERREKALDALRQV----GLENYAHSY 161
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRNTVDT 1073
P + LS R+R+ +A L NP I+ MDE S LD ++RT V+
Sbjct: 162 P--DELSGGMRQRVGLARALAINPDILLMDEAFSALDP-----LIRTEMQDELVKLQAKH 214
Query: 1074 GRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
RT+V H D+ EA D + +M+ G V P
Sbjct: 215 QRTIVFISH----DLDEAMRIGDRIAIMQNGEVVQVGTP 249
|
Length = 400 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ++R +L +L+DE LD + QI K L+++ + T++V L
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-- 193
Query: 421 PAPETYDL------FDDIILISEGQIVYHGPRDNVLE 451
+D+ D I+ + G++V G D +++
Sbjct: 194 -----HDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 67/266 (25%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L+D S V + L+G G+GK+TL AL G +R+ AS
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMG----------------FVRL-----AS 61
Query: 247 GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 306
GKI+ G + + + AY+ Q E +D+S + +L E
Sbjct: 62 GKISILGQPTRQALQKNLVAYVPQ----------SEEVDWS---------FPVLVEDVVM 102
Query: 307 EKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQK 366
+ G M + A + + L + + +G+ +SGGQK
Sbjct: 103 MGRYG---------HMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGGQK 148
Query: 367 KRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426
KRV + +V+L+DE TG+D T +I L+++ TM+V+ T+
Sbjct: 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVS-------TH 200
Query: 427 DL-----FDDIILISEGQIVYHGPRD 447
+L F D ++ +G ++ GP +
Sbjct: 201 NLGSVTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ +++ +L ++++DE + GLD + Q+ + LK + + I+ +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL-QTDENKTIILVSH 204
Query: 421 PAPETYDLFDDIILISEGQIVYHG-PRD 447
E D++I++ EG IV P++
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ++R+ L K+LLMDE + +D T +I + L ++ + T+++
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHS 207
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
PA + + D + + G+++ GP V E
Sbjct: 208 PA-QAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 58/273 (21%), Positives = 109/273 (39%), Gaps = 72/273 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
ILK +S ++ ++GP G+GK+TL L G IW
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG-------------------IWPP--T 389
Query: 246 SGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG + G +L ++ + R Y+ Q D+ + T+ E + R+
Sbjct: 390 SGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTIAENI----------ARFG---- 434
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEMRRGI 361
+ + + ++A +AG V + +L+L G D T +G+ +
Sbjct: 435 -----------EEADPEKVIEAARLAG-----VHELILRLPQGYD----TRIGEG-GATL 473
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM----VHIMDVTMIVA 417
SGGQ++R+ L G ++++DE ++ LDS + + ++ + +
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
L D I+++ +G+I GPR+ VL
Sbjct: 534 ALASV-------DKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ++R+ L +VLL DE + LD T +I ++ M + ++ Q
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQ 206
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450
A D + + +GQIV GP V
Sbjct: 207 QAARISDY---VAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 55/289 (19%), Positives = 116/289 (40%), Gaps = 66/289 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
+KDVS + +T ++GP G GK+T++ ++ ++H+ + + + +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRMHD---------------LVPSARVT 63
Query: 247 GKITYCGHEL-----NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
GKI ++ + +R + Q M++ + V Y+L
Sbjct: 64 GKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDN---------VIAGYKLNG 114
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
++R E D +++ +K VA+ D D + + M +
Sbjct: 115 RVNRSEA------DEIVESSLKRVAL-----------------WDEVKDRLKSNAME--L 149
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++R+ + +V+LMDE ++ LD +T +I + ++++ + ++ +Q
Sbjct: 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
A D + G +V G + F PE+K D++
Sbjct: 210 AARVSDYTAFFYM---GDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 21/78 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD+S +KP L+ GP G GK++L ALAG +W
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-------------------LW--PWG 54
Query: 246 SGKITYCGHELNEFVPQR 263
SG+I E F+PQR
Sbjct: 55 SGRIGMPEGEDLLFLPQR 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1403 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-241 Score=2220.35 Aligned_cols=1258 Identities=54% Similarity=0.936 Sum_probs=1178.9
Q ss_pred cCchHhhHHHHHhhCCChhhhhhcccccccccCcccccccccCCCChhhhHHHHHHHHhhhhhcHHHHHHHHHHhhhhcC
Q 037155 51 QDDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVG 130 (1403)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (1403)
+||||+|||||+|||||++| +++.+.. + +++|+.++++++++..++++.+..++|+++++.++++|++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~-~-----~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF-E-----SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc-c-----CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 45999999999999999999 6655321 1 269999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCh
Q 037155 131 IEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGK 210 (1403)
Q Consensus 131 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGK 210 (1403)
+.|.++++++++.+++++..| ||+.|...+.++..+...+.. ++..++||+|+||.++||||++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998876 999999999998887766654 5567889999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCCCHHHHHHhhccc
Q 037155 211 TTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 290 (1403)
Q Consensus 211 STLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~ 290 (1403)
||||++|+|.++...+ ..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|
T Consensus 155 ttllkal~g~~~~~~~------------------~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rc 216 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLK------------------SSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARC 216 (1391)
T ss_pred HHHHHHHhCCCccccc------------------CCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhc
Confidence 9999999999876543 4689999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHH
Q 037155 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVT 370 (1403)
Q Consensus 291 ~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 370 (1403)
++++.|++ +++|+|+.+ .++|++++++||++|+||+|||+++||+||||||||+
T Consensus 217 k~~~~r~~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvs 270 (1391)
T KOG0065|consen 217 KGPGSRYD---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVS 270 (1391)
T ss_pred cCCccccc---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceee
Confidence 99999887 667776632 2679999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 371 TGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 371 ia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
||+++++++++++|||+|+|||++|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|++||+||+++++
T Consensus 271 i~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 271 IGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCcchhhHHhhhcCCCCCCCCCccccc
Q 037155 451 EFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALV 530 (1403)
Q Consensus 451 ~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~ 530 (1403)
+||+++||+||+++++|||+++++++++++++|..+..|+.+.+++||.+.|.+++.++++..+++.++++.+.|+.++.
T Consensus 351 ~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~ 430 (1391)
T KOG0065|consen 351 PYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALV 430 (1391)
T ss_pred HHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHH
Q 037155 531 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGM 610 (1403)
Q Consensus 531 ~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~ 610 (1403)
.++|..++|+|+++|+.|+|++++||.+++++++++.+++|+++|++|+++++ .+..++..+.|++||++++.+|+++
T Consensus 431 s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~l 508 (1391)
T KOG0065|consen 431 SSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGL 508 (1391)
T ss_pred CCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999985 5566778899999999999999999
Q ss_pred HHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 037155 611 AELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPL 690 (1403)
Q Consensus 611 ~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l 690 (1403)
+|+.+++.++|||+|||+..|||+||++++.+++++|.+++++++|.+++||++|+.+++++||.++++++++++++.++
T Consensus 509 aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~l 588 (1391)
T KOG0065|consen 509 AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGL 588 (1391)
T ss_pred HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHcHHHHHHHHHHHHhhcCCcCccCCCCCC----
Q 037155 691 YRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRS---- 766 (1403)
Q Consensus 691 ~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~isp~~Y~~~al~~nef~~~~~~~~~~~~~---- 766 (1403)
||+++++++++.+|+++|++.++++.+++||+|+..+||+||+|++|++|++|+++++++|||++.+|.|.+.++.
T Consensus 589 Fr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~ 668 (1391)
T KOG0065|consen 589 FRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNI 668 (1391)
T ss_pred HHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999722211
Q ss_pred --------ccccchhhhhhhhcCcc-----ccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccccccc
Q 037155 767 --------INERTLGKALLKRRGFY-----NDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKR 833 (1403)
Q Consensus 767 --------~~~~~~G~~~L~~~~~~-----~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 833 (1403)
....++|..+++.+++. ...+|+|+++|+++||.++|++++++++.|+++..++++.+..+......
T Consensus 669 ~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~ 748 (1391)
T KOG0065|consen 669 SIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKK 748 (1391)
T ss_pred ccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhh
Confidence 12467899999999987 77889999999999999999999999999999999999888776654322
Q ss_pred cCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeE
Q 037155 834 ASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVL 913 (1403)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 913 (1403)
..... . ... ..+......+.+.++++.|+.+..++++|+.|.+++|.+++.+| +++++|+|||+.++||.+
T Consensus 749 ~~~~~-~---~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~L 819 (1391)
T KOG0065|consen 749 KVKSA-G---SSS--EIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVL 819 (1391)
T ss_pred cchhc-c---ccc--cccccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCce
Confidence 11100 0 000 00001111111456788899999999999999999999888776 678899999999999999
Q ss_pred EEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcH
Q 037155 914 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDT 993 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~ 993 (1403)
+||||+||||||||||+|+||++.|.++|+|.|||+|+++..++|.+|||+|+|+|.|++||+|.|.|+|+||++.+++.
T Consensus 820 TALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~ 899 (1391)
T KOG0065|consen 820 TALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSD 899 (1391)
T ss_pred eehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 994 KKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 994 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P-~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
+++.++|+++++.+||++++|.+||.+| +|||.+|||||+||++|++|| .||||||||||||++++..|++.+|++++
T Consensus 900 ~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~ 978 (1391)
T KOG0065|consen 900 EEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD 978 (1391)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 899999999999999999999 89999999999999999999999999999
Q ss_pred CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcchhHHHHHHHhCCCCcCCcccCCcccceeeeccccchhcc
Q 037155 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQL 1152 (1403)
Q Consensus 1073 ~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~ 1152 (1403)
+|+|||||+||||.++++.||++++|++||+++|+||+|++++++++||++++|+++.++ .||||||||+++.+.+...
T Consensus 979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~-~NPA~~mLevi~~~~~~~~ 1057 (1391)
T KOG0065|consen 979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISD-ENPAEWMLEVIGAGAEASL 1057 (1391)
T ss_pred cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCC-CChHHHHHhhccccccccc
Confidence 999999999999999999999999999999999999999999999999999998865554 4999999999999888888
Q ss_pred cccHHHHHHhcHHHHHHHHHHHhhCCCCCC-CCCCCCCCccCCchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 037155 1153 GVDFAEIYANSSLHQRNQELIKELSTPEPG-SSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIF 1231 (1403)
Q Consensus 1153 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~ 1231 (1403)
+.||++.|++|++++++++++++++.|+++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||+
T Consensus 1058 ~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~ 1137 (1391)
T KOG0065|consen 1058 SVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLF 1137 (1391)
T ss_pred CccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCchhhHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCchhhHHhhccccchhhhccc
Q 037155 1232 FGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTN 1311 (1403)
Q Consensus 1232 ~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~~~~y~~a~~~~~~~~~~~~ 1311 (1403)
+|++||+.|+ ++||++|.||++|+++++.+.+++..++|.+..||.++||||++||||+.||++||
T Consensus 1138 iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq----------- 1203 (1391)
T KOG0065|consen 1138 IGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQ----------- 1203 (1391)
T ss_pred heeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHH-----------
Confidence 9999999995 68999999999999999999999888899999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 037155 1312 EHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLAL 1391 (1403)
Q Consensus 1312 ~~~~~~~~l~elp~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~ 1391 (1403)
+++|+||+++++++|.+|+|+|+||++++.+|+||+++++++.+|++++|||+++++||.++|++++++++++
T Consensus 1204 -------~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1204 -------VLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred -------HHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCC
Q 037155 1392 WNLFAGFMIPRE 1403 (1403)
Q Consensus 1392 ~~lf~Gf~i~~~ 1403 (1403)
|++||||++|++
T Consensus 1277 ~~~F~G~l~p~~ 1288 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRS 1288 (1391)
T ss_pred HHHhcccccccc
Confidence 999999999974
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-219 Score=2177.46 Aligned_cols=1337 Identities=62% Similarity=1.055 Sum_probs=1197.3
Q ss_pred ccccccccccccCCCcccCCC--------CccCchHhhHHHHHhhCCChhhhhhccccccc-ccCccc---ccccccCCC
Q 037155 28 SWASASIREVWNAPDNVFSRS--------ERQDDEEELRWAAIERLPTYDRLKKGMLNQIL-EDGKVV---KHEVDVTHL 95 (1403)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~ 95 (1403)
++++.-+++.|.. +++|++. ..|||||+|+|||+||||||+|+|++++.+.. ++|... ..++|+.+|
T Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1470)
T PLN03140 11 SISRSVSRSSRNM-EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKL 89 (1470)
T ss_pred HHHHHhhhhhhhh-hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccC
Confidence 3333335566744 6777442 12789999999999999999999999996421 121111 235999999
Q ss_pred ChhhhHHHHHHHHhhhhhcHHHHHHHHHHhhhhcCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhcc
Q 037155 96 GMQDKKQLMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLH 175 (1403)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~ 175 (1403)
+.++++.+++++.++.++|++++++++++|.|++|++.|+++|+|+||+|+++++++++.+||++|.+.+.++.+.+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 169 (1470)
T PLN03140 90 DGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLG 169 (1470)
T ss_pred ChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776555
Q ss_pred ccCCCcccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCcc
Q 037155 176 LVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHE 255 (1403)
Q Consensus 176 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~ 255 (1403)
...+++.+++||+||||.++|||+++|+|||||||||||++|+|+++++.+ ++|+|+|||++
T Consensus 170 ~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~------------------~~G~I~~nG~~ 231 (1470)
T PLN03140 170 INLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLK------------------VSGEITYNGYR 231 (1470)
T ss_pred cccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCc------------------ceeEEEECCEe
Confidence 444555678899999999999999999999999999999999999876533 58999999999
Q ss_pred CCCCCccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 256 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 256 ~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
+++..+++.++||+|+|.|++++||+|||.|+++|++.+.++++..+++++|++.++.|+.+++++++++..++++.+..
T Consensus 232 ~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~ 311 (1470)
T PLN03140 232 LNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLI 311 (1470)
T ss_pred chhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHH
Confidence 88776778899999999999999999999999999988777777777788888888888888999999998888888888
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++++++.+||++|+||.||+++.+||||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..++|+|
T Consensus 312 ~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvi 391 (1470)
T PLN03140 312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVL 391 (1470)
T ss_pred HHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887789999
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCCh
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPV 495 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~ 495 (1403)
+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++++|||+++++++++++++|.....|++++++
T Consensus 392 is~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~ 471 (1470)
T PLN03140 392 MSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISV 471 (1470)
T ss_pred EEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888777788888999
Q ss_pred hHHHHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 037155 496 SDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICM 575 (1403)
Q Consensus 496 ~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g 575 (1403)
++|+++|++++.++++.++++.+.++.+.++.....++|..++|+|+++|++|++++++||+..+++++++.+++|+++|
T Consensus 472 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~G 551 (1470)
T PLN03140 472 SEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAS 551 (1470)
T ss_pred HHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888777766666666666678999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHH
Q 037155 576 TVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTI 655 (1403)
Q Consensus 576 ~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i 655 (1403)
++||+++++..+..+++.+.|++||+++..++++++++..++.++|||+|||+..||++|+|+++.++.++|+.++++++
T Consensus 552 svF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~i 631 (1470)
T PLN03140 552 TVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVV 631 (1470)
T ss_pred HHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987765555677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHH
Q 037155 656 WIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWG 735 (1403)
Q Consensus 656 ~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~ 735 (1403)
|++++|||+|+.+++++||.++++++++++++.++|++++++++++.+|+.+++++++++++|+||+++.++||+||+|+
T Consensus 632 f~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~ 711 (1470)
T PLN03140 632 WVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWA 711 (1470)
T ss_pred HHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037155 736 YYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 815 (1403)
Q Consensus 736 ~~isp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~ 815 (1403)
+|+||++|+++++++|||.+..|.+..+.. +..+.|..+|+.+|+...++|+|++++++++|+++|+++++++++|.+
T Consensus 712 ~yisp~~Ya~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 712 YWVSPLSYGFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHhCHHHHHHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998886432221 245789999999999999999999999999999999999999999998
Q ss_pred CCCCCCceeeeccccccccCCC------ccccccc--ccc----ccccc-----cc----cccCCCcCCccccccCcEEE
Q 037155 816 PIGDSNSTVVEEDGDKKRASGN------EVEGTQM--TVR----SSTEI-----VG----EEENAPRRGMILPFRPLSLT 874 (1403)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~----~~~~~-----~~----~~~~~~~~g~~~~~~~~~~~ 874 (1403)
+.....+....+..+....... ..+.... ... ...+. .. .....+.+++.+|+.|.+++
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1470)
T PLN03140 790 PLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMS 869 (1470)
T ss_pred ccCCCCccccccchhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEE
Confidence 7665544432211110000000 0000000 000 00000 00 00112345667889999999
Q ss_pred EeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh
Q 037155 875 FNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE 954 (1403)
Q Consensus 875 ~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~ 954 (1403)
|+|++|.++++.+.++.+..++++++|+|||++++||+++||||||||||||||++|+|+.++|..+|+|.+||.+.++.
T Consensus 870 ~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~ 949 (1470)
T PLN03140 870 FDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 949 (1470)
T ss_pred EEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChH
Confidence 99999999988877666666667789999999999999999999999999999999999987767789999999987655
Q ss_pred hhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHH
Q 037155 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLT 1034 (1403)
Q Consensus 955 ~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ 1034 (1403)
.+++.+|||+|+|.++|.+||+|++.|++.++.+.+.+.+++.+.++++++.+||.+++|+.+|.+++++|||||||||+
T Consensus 950 ~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvs 1029 (1470)
T PLN03140 950 TFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLT 1029 (1470)
T ss_pred HhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHH
Confidence 66788999999999999999999999999888766666666777899999999999999999998888899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcch
Q 037155 1035 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRES 1114 (1403)
Q Consensus 1035 IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~ 1114 (1403)
||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|.||.+.++
T Consensus 1030 Ia~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~ 1109 (1470)
T PLN03140 1030 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNS 1109 (1470)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCccccc
Confidence 99999999999999999999999999999999999998899999999999977889999999999889999999999888
Q ss_pred hHHHHHHHhCCCCcCCcccCCcccceeeeccccchhcccccHHHHHHhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCC
Q 037155 1115 HKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGSSELHFPTKYSQ 1194 (1403)
Q Consensus 1115 ~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1403)
+++++||++++|.++||+++|||||++|+++...+...+.||++.|++|++++++++.+++++.+.++.++..++++|++
T Consensus 1110 ~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1470)
T PLN03140 1110 HKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQ 1189 (1470)
T ss_pred ccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccC
Confidence 99999999998888899999999999999887666566679999999999999998888888877766666667788999
Q ss_pred chHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHHHHhhhhhhhH
Q 037155 1195 PFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPV 1274 (1403)
Q Consensus 1195 ~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~ 1274 (1403)
++|+|+++|+||+++++||||.|+++|+++++++|+++|++||++|++..+++|+++++|++|++++|+++.++++++|.
T Consensus 1190 s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~ 1269 (1470)
T PLN03140 1190 STWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPM 1269 (1470)
T ss_pred CHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHhhccccchhhhcccccchhhhHHHHHHHHHHHHHHHhhhhhhccCcccchhHHHHHH
Q 037155 1275 ICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFF 1354 (1403)
Q Consensus 1275 ~~~er~vf~RE~~~~~Y~~~~y~~a~~~~~~~~~~~~~~~~~~~~l~elp~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~ 1354 (1403)
+..||+||+|||++|||++.+|++|+ +++|+||.++++++|++|+|||+||++++++||||+
T Consensus 1270 ~~~eR~vf~REr~~~~Y~~~~y~la~------------------~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~ 1331 (1470)
T PLN03140 1270 VAVERTVFYRERAAGMYSALPYAIAQ------------------VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331 (1470)
T ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCC
Q 037155 1355 YFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPRE 1403 (1403)
Q Consensus 1355 ~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 1403 (1403)
+++|++.++++++|+++++++|+.++|++++++++++|++||||++|++
T Consensus 1332 ~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 1380 (1470)
T PLN03140 1332 FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRP 1380 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChH
Confidence 9999999999999999999999999999999999999999999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-173 Score=1740.81 Aligned_cols=1205 Identities=32% Similarity=0.544 Sum_probs=992.8
Q ss_pred cHHHHHHHHHHhhhhcCCCCC--ccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceE
Q 037155 114 DNERFLTRIRHRTDRVGIEIP--KIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVS 191 (1403)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 191 (1403)
|.+++++.++++.++.+...| +++|+|+||+|++ ...+...+||+.|.+.+.......... ..+++++++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~vs 81 (1394)
T TIGR00956 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPMD 81 (1394)
T ss_pred CHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCCE
Confidence 445555544444445544444 9999999999999 445666789999998886664332221 123445678999999
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--ccceEEEec
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--PQRTCAYIS 269 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~ 269 (1403)
+.++|||+++|+||||||||||||+|+|+.++.. .+.+|+|.+||+++++.. .++.++||+
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~-----------------~~~~G~I~~~G~~~~~~~~~~r~~i~yv~ 144 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH-----------------IGVEGVITYDGITPEEIKKHYRGDVVYNA 144 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC-----------------CCceeEEEECCEehHHHHhhcCceeEEec
Confidence 9999999999999999999999999999874321 236899999998775432 345699999
Q ss_pred cCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccc
Q 037155 270 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICA 349 (1403)
Q Consensus 270 Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 349 (1403)
|+|.|++.+||+|||.|+++++.+..+.. ...+.++ .+...+.+++.+||++++
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~ 198 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTR 198 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCccccc
Confidence 99999999999999999987764321100 0001110 012346689999999999
Q ss_pred cccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 037155 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLF 429 (1403)
Q Consensus 350 dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 429 (1403)
||.||++..+||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++|
T Consensus 199 ~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~ 278 (1394)
T TIGR00956 199 NTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELF 278 (1394)
T ss_pred CceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998678999999999999999999
Q ss_pred CEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCcchh
Q 037155 430 DDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 509 (1403)
Q Consensus 430 D~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~ 509 (1403)
|+|++|++|+++|+|+++++.+||+++||+||++.+++||+++++++.++ +++... +.....++++++++|++++.++
T Consensus 279 D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~ 356 (1394)
T TIGR00956 279 DKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYA 356 (1394)
T ss_pred ceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999987543 222111 1112356889999999998877
Q ss_pred hHHhhhcCCCCCC---------------CCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 037155 510 QLASDLRVPYDKS---------------QTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLIC 574 (1403)
Q Consensus 510 ~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~ 574 (1403)
++.++++.+.++. ...+.....++|..|+|+|++.|++|+++.++||+..++.++++.+++|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~ 436 (1394)
T TIGR00956 357 QLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALIL 436 (1394)
T ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 7666654322110 0001112334688899999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHH
Q 037155 575 MTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDST 654 (1403)
Q Consensus 575 g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~ 654 (1403)
|++||+.+.+. .+.+.+.|++||++++.++.++.++...+.+||+|+|||..++|++++|++++.+.++|+.++.++
T Consensus 437 G~~F~~~~~~~---~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~ 513 (1394)
T TIGR00956 437 SSVFYNLPKNT---SDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESV 513 (1394)
T ss_pred HHhhcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987543 344678999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHH
Q 037155 655 IWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEW 734 (1403)
Q Consensus 655 i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w 734 (1403)
+|++++|||+|+.+++++||.+++++++++.++.++++++++++++..+|+.+++++++++++++||+++.++||+||+|
T Consensus 514 if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W 593 (1394)
T TIGR00956 514 VFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKW 593 (1394)
T ss_pred HHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHHHHHHHHhhcCCcCccCC--C-C---------CCcc---------ccchhhhhhhhcCccccccchhhhH
Q 037155 735 GYYVSPMMYGQTSILVDEFLDGRWDVPS--G-D---------RSIN---------ERTLGKALLKRRGFYNDSYWYWIGI 793 (1403)
Q Consensus 735 ~~~isp~~Y~~~al~~nef~~~~~~~~~--~-~---------~~~~---------~~~~G~~~L~~~~~~~~~~~~w~~~ 793 (1403)
++|+||+.|+++++++|||.+..+.|.. + + ...| +...|.++|+. ++.....|+|.++
T Consensus 594 ~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~ 672 (1394)
T TIGR00956 594 IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNF 672 (1394)
T ss_pred HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHH
Confidence 9999999999999999999999888741 1 0 1111 23578888884 3333456899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccccccccCC--Cccccccccccccccc--cccccCCCcCC-cc-cc
Q 037155 794 GALIGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRASG--NEVEGTQMTVRSSTEI--VGEEENAPRRG-MI-LP 867 (1403)
Q Consensus 794 g~l~g~~v~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~g-~~-~~ 867 (1403)
+++++|+++|.++++++++|.++.......+............ ...+.....++...+. ...+.+.+... .+ .|
T Consensus 673 gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1394)
T TIGR00956 673 GIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDME 752 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCcccccccccccccccc
Confidence 9999999999999999999998655544333322211100000 0000000000000000 00000000000 00 01
Q ss_pred --ccCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEE
Q 037155 868 --FRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDI 944 (1403)
Q Consensus 868 --~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i 944 (1403)
.....++|+|++|.++.+ .+++.+|+|||++++|||++||||||||||||||++|+|+.++| ..+|+|
T Consensus 753 ~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I 823 (1394)
T TIGR00956 753 KESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR 823 (1394)
T ss_pred ccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence 112357899998876421 23467999999999999999999999999999999999987644 346999
Q ss_pred EEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 037155 945 KISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024 (1403)
Q Consensus 945 ~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1024 (1403)
.+||++... .+++.+|||+|+|.+++.+||+|++.|++.++.+...+.+++.++++++++.++|.+++|+.+|.++. +
T Consensus 824 ~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~ 901 (1394)
T TIGR00956 824 LVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-G 901 (1394)
T ss_pred EECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-C
Confidence 999998753 46788999999999999999999999999888766666667778899999999999999999986644 7
Q ss_pred CCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1025 LSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|||||||||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~ 981 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQ 981 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCE
Confidence 99999999999999999997 99999999999999999999999999888999999999999767889999999998789
Q ss_pred EEEecCCCcchhHHHHHHHhCCCCcCCcccCCcccceeeeccccchhcccccHHHHHHhcHHHHHHHHHHHhhCCCCCCC
Q 037155 1104 VIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVENQLGVDFAEIYANSSLHQRNQELIKELSTPEPGS 1183 (1403)
Q Consensus 1104 ~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1183 (1403)
++|.|+.+++++++++||+++ |.++||+++|||||++|+++...+.....+|.+.|++|++++.+.+.++.+..+....
T Consensus 982 iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1060 (1394)
T TIGR00956 982 TVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKA 1060 (1394)
T ss_pred EEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccC
Confidence 999999988888999999986 7667999999999999998765444445689999999998887766655544332211
Q ss_pred C---CCCCCCccCCchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHH
Q 037155 1184 S---ELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVC 1260 (1403)
Q Consensus 1184 ~---~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1260 (1403)
. +.....+|+.|+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++
T Consensus 1061 ~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~ 1137 (1394)
T TIGR00956 1061 EDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMAT 1137 (1394)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHH
Confidence 1 111224789999999999999999999999999999999999999999999999986 4788999999999988
Q ss_pred HHHHHHhhhhhhhHHHHHHHHH-HHHhcCCCCchhhHHhhccccchhhhcccccchhhhHHHHHHHHHHHHHHHhhhhhh
Q 037155 1261 LFLGTTNAVSAIPVICVERTVY-YRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYS 1339 (1403)
Q Consensus 1261 ~~~~~~~~~~~~~~~~~er~vf-~RE~~~~~Y~~~~y~~a~~~~~~~~~~~~~~~~~~~~l~elp~~~~~~~~~~~i~Y~ 1339 (1403)
++.++. +.+++|.+..||.+| +|||++|+|++.+|++|+ +++|+|+.++.+++|++|+||
T Consensus 1138 ~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~------------------~l~elP~~~~~~~if~~i~Y~ 1198 (1394)
T TIGR00956 1138 VLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQ------------------ITVEIPYNLVAGTIFFFIWYY 1198 (1394)
T ss_pred HHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHH------------------HHHHHHHHHHHHHHHHhheee
Confidence 888776 355678888888885 999999999999999999 999999999999999999999
Q ss_pred ccCcccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCC
Q 037155 1340 MIGFKWELGK-------FFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPRE 1403 (1403)
Q Consensus 1340 ~~g~~~~~~~-------f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 1403 (1403)
|+||++++.+ |++|+++++++.++++++|+++++++|+.++|+.++++++++|++||||++|++
T Consensus 1199 ~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~ 1269 (1394)
T TIGR00956 1199 PVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPS 1269 (1394)
T ss_pred cccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChh
Confidence 9999998876 999999999999999999999999999999999999999999999999999863
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=777.06 Aligned_cols=585 Identities=29% Similarity=0.493 Sum_probs=491.6
Q ss_pred CCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCChHH
Q 037155 133 IPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (1403)
Q Consensus 133 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKST 212 (1403)
...++++|+|+++++... . +..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~-~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------S-KKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------C-CccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 456789999999976422 1 14578999999999999999999999999999
Q ss_pred HHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCCCHHHHHHhhccccc
Q 037155 213 LMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 292 (1403)
Q Consensus 213 LL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~ 292 (1403)
||++|+|+...+.+ .+|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|+++.
T Consensus 72 LL~~Lagr~~~~~~------------------~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrl 133 (613)
T KOG0061|consen 72 LLNALAGRLNGGLK------------------LSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRL 133 (613)
T ss_pred HHHHHhccccCCCc------------------ceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcC
Confidence 99999999876433 789999999887777778999999999999999999999999999876
Q ss_pred ccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHH
Q 037155 293 VGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTG 372 (1403)
Q Consensus 293 ~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia 372 (1403)
+.. +++.++ +.++|.+++.|||.+|+||+||+...|||||||||||+||
T Consensus 134 p~~-------~~~~~k------------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 134 PSS-------LSKEEK------------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred CCC-------CCHHHH------------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 532 222222 3468899999999999999999988899999999999999
Q ss_pred HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHH
Q 037155 373 EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEF 452 (1403)
Q Consensus 373 ~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~ 452 (1403)
..|+.+|+||||||||||||+.++.++++.|+++|+. |+|||+++|||+.+++++||++++|++|+++|+|+++++.+|
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~f 261 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEF 261 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCChHHHHHhhcCcc--chhhhhhccCCCCCCCChhHHHHHHHhCcchhhHHhhhcCCCCCCCCCccccc
Q 037155 453 FEQMGFKCPERKGVADFLQEVTSKK--DQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALV 530 (1403)
Q Consensus 453 F~~~G~~cp~~~~~ad~l~ev~s~~--~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~ 530 (1403)
|+++|++||++.||+||+.++.+.. .++..... ......+.++..+...+............ . ..
T Consensus 262 f~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~ 328 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLDLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLEALEKSLSTS--K---KV 328 (613)
T ss_pred HHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHHHHhhhcccc--c---cc
Confidence 9999999999999999999987742 11100000 00000111110000000000000000000 0 00
Q ss_pred cCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHH
Q 037155 531 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGM 610 (1403)
Q Consensus 531 ~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~ 610 (1403)
......++|.|+..+++|.++.++|++.++..|.+|.+.+++++|.+|++.+..... .....|.+||.+....+..+
T Consensus 329 ~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~---~~~~~g~~~~~~~~~~f~~~ 405 (613)
T KOG0061|consen 329 EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKG---IQNRLGLFFFILSFMTFLSM 405 (613)
T ss_pred ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHHHHHHHHHHHHHH
Confidence 111167999999999999999999999999999999999999999999998644332 23677888888887766665
Q ss_pred H-HHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHH
Q 037155 611 A-ELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALP 689 (1403)
Q Consensus 611 ~-~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~ 689 (1403)
. .++....++++|.||+..+.|+.++|++++.+.++|+.++.+++|..++|||+|+.++..+|+.+.++.++...++.+
T Consensus 406 ~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s 485 (613)
T KOG0061|consen 406 FGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAES 485 (613)
T ss_pred HhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5 588889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHcHHHHHHHHHHHHhhcCCcCccCCCCCCccc
Q 037155 690 LYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINE 769 (1403)
Q Consensus 690 l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~isp~~Y~~~al~~nef~~~~~~~~~~~~~~~~ 769 (1403)
++.+++++.++...|.++++++++.+++++||+++.+.||+||.|+.|+|+.+|++++++.|||.+....|..... .++
T Consensus 486 ~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~ 564 (613)
T KOG0061|consen 486 LGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCC 564 (613)
T ss_pred HHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974333332211 256
Q ss_pred cchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037155 770 RTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 815 (1403)
Q Consensus 770 ~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~ 815 (1403)
...|..+++..++...+ .|.++.+++++.++|.+++++++++..
T Consensus 565 ~~~~~~~l~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 565 ESTGEDVLKQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cccHHHHHHhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78899999999887665 588999999999999999999998864
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-80 Score=783.78 Aligned_cols=572 Identities=26% Similarity=0.465 Sum_probs=482.2
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC
Q 037155 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV 260 (1403)
Q Consensus 181 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~ 260 (1403)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.+++.. .+|+|.+||++++...
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~------------------~~G~i~~~g~~~~~~~ 96 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVK------------------GSGSVLLNGMPIDAKE 96 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc------------------ceeEEEECCEECCHHH
Confidence 3467899999999999999999999999999999999999865321 5799999999876544
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.+|||+|+|.+++++||+|||.|+++++.+.. +++.+ ....++.++
T Consensus 97 ~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~-------~~~~~------------------------~~~~v~~~l 145 (617)
T TIGR00955 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR-------VTKKE------------------------KRERVDEVL 145 (617)
T ss_pred HhhhceeeccccccCccCcHHHHHHHHHhcCCCCC-------CCHHH------------------------HHHHHHHHH
Confidence 56789999999999999999999999987754321 01111 122467889
Q ss_pred HHcCCcccccccccCcc-CCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 341 KLLGLDICADTMVGDEM-RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~-~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
+.+||++++||.||++. .++|||||||||+||++|+++|++++|||||+|||+.++.++++.|+++++ .|+|+|+++|
T Consensus 146 ~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~h 224 (617)
T TIGR00955 146 QALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIH 224 (617)
T ss_pred HHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 99999999999999863 789999999999999999999999999999999999999999999999986 4899999999
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 499 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~ 499 (1403)
||+.+++++||+|++|++|+++|+|+++++.+||+++|++||++.+++||+.++++.....+. . .....+++.
T Consensus 225 q~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~ 297 (617)
T TIGR00955 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKIC 297 (617)
T ss_pred CCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765322110 0 011234566
Q ss_pred HHHHhCcchhhHHhhhcCCCCCCC---CCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 037155 500 EGFKSFHMGQQLASDLRVPYDKSQ---THPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMT 576 (1403)
Q Consensus 500 ~~~~~s~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~ 576 (1403)
+.|+.++..++..+.......... .........++..+++.|+..+++|.++..+||+..+..++++.+++++++|+
T Consensus 298 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~ 377 (617)
T TIGR00955 298 DSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGL 377 (617)
T ss_pred HHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444433321111100 00011122356789999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCccCcchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHH
Q 037155 577 VFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGM-AELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTI 655 (1403)
Q Consensus 577 vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~-~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i 655 (1403)
+|++.+.+. .+.+...|++|+.++..+|..+ ..+.....++++|+||+..++|++++|++++.+.++|+.++.+++
T Consensus 378 ~f~~~~~~~---~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i 454 (617)
T TIGR00955 378 IYLGQGLTQ---KGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPAL 454 (617)
T ss_pred hhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987543 3345668899999888877765 445667789999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHH
Q 037155 656 WIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWG 735 (1403)
Q Consensus 656 ~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~ 735 (1403)
|.+++|||+|+.+++.+||.+++++++...++.++++++++++++..+|..+++++++++++++||+++.++||+||+|+
T Consensus 455 f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~ 534 (617)
T TIGR00955 455 FTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWL 534 (617)
T ss_pred HHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcHHHHHHHHHHHHhhcCCcC-ccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 037155 736 YYVSPMMYGQTSILVDEFLDGRW-DVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYL 814 (1403)
Q Consensus 736 ~~isp~~Y~~~al~~nef~~~~~-~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~ 814 (1403)
+|+||++|++++++.|||.+..+ .|...+....|...|..+++.+|+...+ +|.++++++++.++|.++++++|++.
T Consensus 535 ~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 535 SYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988775 4432221112445689999999987654 48999999999999999999999875
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-81 Score=779.91 Aligned_cols=493 Identities=34% Similarity=0.630 Sum_probs=431.9
Q ss_pred cCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEEc
Q 037155 869 RPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKIS 947 (1403)
Q Consensus 869 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~ 947 (1403)
.++++.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999887754321 3478999999999999999999999999999999999998764 678999999
Q ss_pred CccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 037155 948 GYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 948 g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1027 (1403)
|++.+...+++.+|||.|+|.++|++||+|++.|+|.+|++...+.++++++|+++++.+||.+++|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 99888888999999999999999999999999999999999988899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
||||||+||.+|+.||+||||||||||||+.++..++++|+++|++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 799999
Q ss_pred cCCCcchhHHHHHHHhCCCCcCCcccCCcccceeeecccc--chhccc----ccHHHHHH-hcHHHHHHHHHHHhhCCCC
Q 037155 1108 GPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNIS--VENQLG----VDFAEIYA-NSSLHQRNQELIKELSTPE 1180 (1403)
Q Consensus 1108 g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~--~~~~~~----~~~~~~~~-~s~~~~~~~~~~~~~~~~~ 1180 (1403)
|+. +++.+||+++ |.| ||+++|||||.+|+.+.. .+.... ....+.++ .....+......+.+..
T Consensus 253 G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 324 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLST-- 324 (613)
T ss_pred cCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccc--
Confidence 996 5789999998 665 999999999999988742 111000 00111111 11011110001111111
Q ss_pred CCCCCCCCCCccCCchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHH
Q 037155 1181 PGSSELHFPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVC 1260 (1403)
Q Consensus 1181 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1260 (1403)
... .+.....+||.|+..+++|.+++.+|+|.+...|+++.+++|+++|++||+.+++ ..+++++.|++|+.+
T Consensus 325 --~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 325 --SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFIL 397 (613)
T ss_pred --ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHH
Confidence 111 1111268999999999999999999999999999999999999999999999764 456668999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCchhhHHhhccccchhhhcccccchhhhHHHHHHHHHHHHHHHhhhhhhc
Q 037155 1261 LFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSM 1340 (1403)
Q Consensus 1261 ~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~~~~y~~a~~~~~~~~~~~~~~~~~~~~l~elp~~~~~~~~~~~i~Y~~ 1340 (1403)
.++.+..+...++.++.||++|.||+.+|+|+..+|++|+ .++++|+.++.+++|++|+|||
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~------------------~l~~lP~~~i~~~if~~i~Y~m 459 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAK------------------TLAELPFLLVLSIIFSSIVYWM 459 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHh
Confidence 9998888888889999999999999999999999999999 9999999999999999999999
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCC
Q 037155 1341 IGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPRE 1403 (1403)
Q Consensus 1341 ~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 1403 (1403)
+|++++..+|++|+++.++..+.+.++|++++++.||...|.++++++.+.+++|+||+++.+
T Consensus 460 ~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~ 522 (613)
T KOG0061|consen 460 VGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFD 522 (613)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999853
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-80 Score=780.25 Aligned_cols=500 Identities=26% Similarity=0.487 Sum_probs=421.9
Q ss_pred cCcEEEEeeceeeeeccc----------------cccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 869 RPLSLTFNQMNYYVDMPA----------------EMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 869 ~~~~~~~~~~~y~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
.++++.|.++.|.++... ..++....++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 467899999999986542 1112233445678999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc
Q 037155 933 GRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012 (1403)
Q Consensus 933 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 1012 (1403)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+.....+++.+.++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544589999999986533 345689999999999999999999999877765555556666779999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhc
Q 037155 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1092 (1403)
Q Consensus 1013 ~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1092 (1403)
+|+.+|+...++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEecCCCcchhHHHHHHHhCCCCcCCcccCCcccceeeeccccchh-----cc----cccHHHHHHhc
Q 037155 1093 DELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNISVEN-----QL----GVDFAEIYANS 1163 (1403)
Q Consensus 1093 d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~-----~~----~~~~~~~~~~s 1163 (1403)
|++++|+ +|+++|.|+. +++.+||+++ |. +||+++|||||++|+++...+. .. .....+.|+++
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999998 5899999986 5799999998 55 5899999999999998753210 00 01123344322
Q ss_pred HHHHHHHHHHHhh--CC-CCC-----CCCCCC-CCCccCCchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 037155 1164 SLHQRNQELIKEL--ST-PEP-----GSSELH-FPTKYSQPFFTQFKASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGL 1234 (1403)
Q Consensus 1164 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1234 (1403)
. .+..++.++.. .. +.+ ..+... ....+..+||+|+.+|++|++++ ||++.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111111 00 000 000000 11235578999999999999998 99999999999999999999999
Q ss_pred HhccCCCCCCchhhHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCchhhHHhhccccchhhhcccccc
Q 037155 1235 LFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQNRNFVIRKLTNEHS 1314 (1403)
Q Consensus 1235 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~~~~y~~a~~~~~~~~~~~~~~~ 1314 (1403)
+||+++ ..+++++.|++|++++++++.+++.++|.++.||+||+|||.+|+|++.+|++|+
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~-------------- 486 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMAR-------------- 486 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHH--------------
Confidence 999985 4578999999999999989888888899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 037155 1315 LMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNL 1394 (1403)
Q Consensus 1315 ~~~~~l~elp~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~l 1394 (1403)
+++|+|+.++.+++|++|+|||+|+++++++||+|+++++++.++++++|+++++++|+.++|+.+++++++++++
T Consensus 487 ----~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~l 562 (659)
T PLN03211 487 ----IVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVL 562 (659)
T ss_pred ----HHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccC
Q 037155 1395 FAGFMIP 1401 (1403)
Q Consensus 1395 f~Gf~i~ 1401 (1403)
||||+|+
T Consensus 563 fsGf~i~ 569 (659)
T PLN03211 563 TGGFYVH 569 (659)
T ss_pred HhhhhHh
Confidence 9999985
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=767.64 Aligned_cols=610 Identities=20% Similarity=0.341 Sum_probs=470.4
Q ss_pred CCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCChH
Q 037155 132 EIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKT 211 (1403)
Q Consensus 132 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKS 211 (1403)
..+.++++|.|+++.+.......+... ....+.......+.. .+..++++|+|||++++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDET-RQIQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----ccccccccccccccc-ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 345799999999998753310110100 000000000000011 112356799999999999999999999999999
Q ss_pred HHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCCCHHHHHHhhcccc
Q 037155 212 TLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 291 (1403)
Q Consensus 212 TLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~ 291 (1403)
|||++|+|+++++ ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++
T Consensus 109 TLL~iLaG~~~~~-------------------~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~ 168 (659)
T PLN03211 109 TLLNALAGRIQGN-------------------NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168 (659)
T ss_pred HHHHHHhCCCCCC-------------------ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhC
Confidence 9999999998652 1489999999887542 2456999999999999999999999986553
Q ss_pred cccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHH
Q 037155 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTT 371 (1403)
Q Consensus 292 ~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsi 371 (1403)
.... .++.+ ....++.+++.+||++++||.||+...++|||||||||+|
T Consensus 169 ~~~~-------~~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~i 217 (659)
T PLN03211 169 LPKS-------LTKQE------------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSI 217 (659)
T ss_pred CCCC-------CCHHH------------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHH
Confidence 2110 00000 1124577899999999999999998899999999999999
Q ss_pred HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 372 GEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 372 a~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|++|+.+|++|+|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+++++.+
T Consensus 218 a~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 218 AHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999999999999999987 589999999999988999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCcchhhHHhhhcC---CCCCCC-----
Q 037155 452 FFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRV---PYDKSQ----- 523 (1403)
Q Consensus 452 ~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~---~~~~~~----- 523 (1403)
||+++||+||++.|+|||+.++++...+.........+ ...+++.+.|++... +...+.... .....+
T Consensus 297 ~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 372 (659)
T PLN03211 297 YFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSA 372 (659)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcc
Confidence 99999999999999999999998764321100000001 011233344432111 111111100 000000
Q ss_pred CCcc-ccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCcchhhhHHHHHH
Q 037155 524 THPA-ALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSL 602 (1403)
Q Consensus 524 ~~~~-~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l 602 (1403)
.... ......+..++|.|+..+++|.++. +|++.+...|+++.+++|+++|++||+.+ ..+.+...|++||.+
T Consensus 373 ~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~ 446 (659)
T PLN03211 373 STKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFIS 446 (659)
T ss_pred cccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHH
Confidence 0000 0011224568999999999999988 78888888999999999999999999874 234567889999987
Q ss_pred HHHHH-HHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Q 037155 603 LNIMF-NGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYF 681 (1403)
Q Consensus 603 ~~~~~-~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~ 681 (1403)
++.++ ..+..+..+..++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++++||.++++++
T Consensus 447 ~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~ 526 (659)
T PLN03211 447 IFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLL 526 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHH
Confidence 77554 55677888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHcHHHHHHHHHHHHhhcCCcC---
Q 037155 682 CIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRW--- 758 (1403)
Q Consensus 682 ~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~isp~~Y~~~al~~nef~~~~~--- 758 (1403)
+...++.+++.++++++++..+|+.+++++++++++|+||+++ +||+||+|++|+||++|+++++++|||.+.+-
T Consensus 527 l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~ 604 (659)
T PLN03211 527 GYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISS 604 (659)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCcccccc
Confidence 9999999999999999999999999999999999999999996 79999999999999999999999999976542
Q ss_pred --ccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037155 759 --DVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 815 (1403)
Q Consensus 759 --~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~ 815 (1403)
.|.... +....+..++....+. ....|.++++++++.++|.++++++|++.+
T Consensus 605 ~~~C~~~~---~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 605 LLGCSLPH---GSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccCCCCcc---cCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 332211 0001111122222222 234688999999999999999999998653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=804.41 Aligned_cols=598 Identities=24% Similarity=0.405 Sum_probs=496.4
Q ss_pred CCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCh
Q 037155 131 IEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGK 210 (1403)
Q Consensus 131 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGK 210 (1403)
++...+.+.|+|++++++...+.+. ....+.++++|+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 4556678999999998754311000 0111234579999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCCCHHHHHHhhccc
Q 037155 211 TTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 290 (1403)
Q Consensus 211 STLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~ 290 (1403)
||||++|+|+.++. +.+|+|.+||++.+....++.+|||+|+|.|++.+||+|||.|++.+
T Consensus 920 TTLL~~LaG~~~~g-------------------~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~l 980 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-------------------YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFL 980 (1470)
T ss_pred HHHHHHHcCCCCCC-------------------cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHh
Confidence 99999999986432 25899999998765444467799999999999999999999998765
Q ss_pred ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHH
Q 037155 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVT 370 (1403)
Q Consensus 291 ~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 370 (1403)
+.+.. .++.+ ....++.+++.+||++++|+.||+...++|||||||||+
T Consensus 981 r~~~~-------~~~~~------------------------~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvs 1029 (1470)
T PLN03140 981 RLPKE-------VSKEE------------------------KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLT 1029 (1470)
T ss_pred CCCCC-------CCHHH------------------------HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHH
Confidence 42110 00000 112467889999999999999998777899999999999
Q ss_pred HHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcC-CeEEEecCh---
Q 037155 371 TGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISE-GQIVYHGPR--- 446 (1403)
Q Consensus 371 ia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~-G~iv~~G~~--- 446 (1403)
||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|+|+++|||+.++++.||++++|++ |+++|+|+.
T Consensus 1030 Ia~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~ 1108 (1470)
T PLN03140 1030 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRN 1108 (1470)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccc
Confidence 99999999999999999999999999999999999986 4899999999999889999999999996 899999996
Q ss_pred -hhHHHHHHHc-CC-CCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCcchhhHHhhhcCCCCCCC
Q 037155 447 -DNVLEFFEQM-GF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQ 523 (1403)
Q Consensus 447 -~~~~~~F~~~-G~-~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~ 523 (1403)
+++.+||+++ |+ +||+..|||||+.++++..... ....++++.|+.++.+++..+.+........
T Consensus 1109 ~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~ 1176 (1470)
T PLN03140 1109 SHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPP 1176 (1470)
T ss_pred cccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCC
Confidence 6899999997 66 5999999999999997643211 1124678888888776665444321111111
Q ss_pred CCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccCcchhhhHHHHHHH
Q 037155 524 THPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGALFFSLL 603 (1403)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~ 603 (1403)
.........+|..++|.|++.|++|+++.++||+.++..|+++.+++|+++|++||+.+.+..+..+.+...|++|++++
T Consensus 1177 ~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~ 1256 (1470)
T PLN03140 1177 GASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVL 1256 (1470)
T ss_pred CccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHH
Confidence 11111123568899999999999999999999999999999999999999999999998665555566667899999888
Q ss_pred HHHHHHHHH-HHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Q 037155 604 NIMFNGMAE-LSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAASRFFKQYLAYFC 682 (1403)
Q Consensus 604 ~~~~~~~~~-l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~ 682 (1403)
+..++...+ ++....+|++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+.++++.||.++++.++
T Consensus 1257 ~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l 1336 (1470)
T PLN03140 1257 FVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFF 1336 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 877755444 4566779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHcHHHHHHHHHHHHhhcCCcCccCC
Q 037155 683 IHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPS 762 (1403)
Q Consensus 683 ~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~isp~~Y~~~al~~nef~~~~~~~~~ 762 (1403)
...++.+++.++++++++..+|..++++++.++++|+||+++.++||+||+|+||+||+.|++++++.|||.+....|.+
T Consensus 1337 ~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~ 1416 (1470)
T PLN03140 1337 SFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKV 1416 (1470)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665544
Q ss_pred CCCCccccchhhh-hhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 037155 763 GDRSINERTLGKA-LLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNP 816 (1403)
Q Consensus 763 ~~~~~~~~~~G~~-~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~ 816 (1403)
++. .+. ..+.+ +++.+|+..+ |.|.+++++++|.++|.+++++++++++.
T Consensus 1417 ~~~-~~~-~~~~~~~~~~~g~~~~--~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1417 PGG-APD-PTIKWYIQDHYGYDPD--FMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred CCC-CCC-CcHHHHHHHhcCcCcc--cccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 321 011 23444 4677888654 57889999999999999999999999874
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-78 Score=761.73 Aligned_cols=479 Identities=32% Similarity=0.541 Sum_probs=423.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999986543 3579999999988766678889999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
+||+.|++.++.+.+...+++++.++++++.+||.+++|+.+|.++ .++|||||||||+||+||+.+|+++||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999998887766677777889999999999999999999754 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcchhHHHHHHHhCCCCcCCcccC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAY 1134 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 1134 (1403)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.||. +++.+||+++ |. +||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCC
Confidence 999999999999999998899999999999878999999999998 5899999996 5789999998 54 589999
Q ss_pred Ccccceeeeccccchhcc-----cccHHHHHHhcHHHHHHHHHHHhhCCCCCC---CCCCCCCCccCCchHHHHHHHHHH
Q 037155 1135 NPATWMLEVSNISVENQL-----GVDFAEIYANSSLHQRNQELIKELSTPEPG---SSELHFPTKYSQPFFTQFKASFWK 1206 (1403)
Q Consensus 1135 npa~~~l~v~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~R 1206 (1403)
|||||++++++...+... ..++.+.|++|+.+++..+.......+.++ .......++|..++++|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 999999999865332211 124556677776665544333221111111 111112346789999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 037155 1207 QYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRER 1286 (1403)
Q Consensus 1207 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~vf~RE~ 1286 (1403)
+++++||||.++.+|+++.+++|+++|++||+++. ++++++++.|++|++++++++.++..+.+.++.||.+|+|||
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986 467899999999999999998888888899999999999999
Q ss_pred cCCCCchhhHHhhccccchhhhcccccchhhhHHHHHHHHHHHHHHHhhhhhhccCcccchhHHHHHHHHHHHHHHHHHH
Q 037155 1287 AAGMFSALSYALGQNRNFVIRKLTNEHSLMLQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTL 1366 (1403)
Q Consensus 1287 ~~~~Y~~~~y~~a~~~~~~~~~~~~~~~~~~~~l~elp~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 1366 (1403)
.+|+|++.+|++|+ +++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.+++++
T Consensus 427 ~~~~Y~~~~y~la~------------------~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s 488 (617)
T TIGR00955 427 RSGLYRVSAYFLAK------------------TIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATS 488 (617)
T ss_pred cCCccCHHHHHHHH------------------HHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCC
Q 037155 1367 YGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPRE 1403 (1403)
Q Consensus 1367 ~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 1403 (1403)
+|+++++++|+..+|..++++++.++++|+||++|++
T Consensus 489 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~ 525 (617)
T TIGR00955 489 FGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSD 525 (617)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChh
Confidence 9999999999999999999999999999999999863
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-74 Score=722.73 Aligned_cols=767 Identities=23% Similarity=0.331 Sum_probs=421.1
Q ss_pred CCcccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC
Q 037155 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE 258 (1403)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~ 258 (1403)
+.+++.+||+|+|+.|++|+.+||+|||||||||++++|.++++| .+|+|.++|.++.+
T Consensus 361 PsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP---------------------~~G~V~idG~di~~ 419 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP---------------------TSGEVLIDGEDIRN 419 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC---------------------CCceEEEcCccchh
Confidence 344577899999999999999999999999999999999999875 58999999999887
Q ss_pred CCc---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 259 FVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 259 ~~~---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
+.. +.++|.|+|+|.+|. .||+|||.|+ +||...++..+|+..++.
T Consensus 420 ~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G-------------------------~~dat~~~i~~a~k~ana----- 468 (1228)
T KOG0055|consen 420 LNLKWLRSQIGLVSQEPVLFA-TTIRENIRYG-------------------------KPDATREEIEEAAKAANA----- 468 (1228)
T ss_pred cchHHHHhhcCeeeechhhhc-ccHHHHHhcC-------------------------CCcccHHHHHHHHHHccH-----
Confidence 654 578999999998885 5999999986 345555666666665542
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
.+.+.+ |++.+||.||+ .+-.|||||||||+|||||+.+|+|||||||||+||+.++..+.++|++..+ |+|+|
T Consensus 469 ~~fi~~---lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTi 542 (1228)
T KOG0055|consen 469 HDFILK---LPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTI 542 (1228)
T ss_pred HHHHHh---hHHhhcccccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEE
Confidence 344444 89999999996 3344999999999999999999999999999999999999999999998765 67888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHH--HHhhcCccchhhhhhccCCCCCCC
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADF--LQEVTSKKDQEQYWFRKNQPYRYI 493 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~--l~ev~s~~~~~~~~~~~~~~~~~~ 493 (1403)
+..|..+ +.+.+|+|++|++|+||+.|+++|++.. -| .-++. +|+....++.+. + ....
T Consensus 543 vVaHRLS--tIrnaD~I~v~~~G~IvE~G~h~ELi~~---~G-------~Y~~lv~~Q~~~~~~~~~~-~---~~~~--- 603 (1228)
T KOG0055|consen 543 VVAHRLS--TIRNADKIAVMEEGKIVEQGTHDELIAL---GG-------IYSSLVRLQELEKAAEDEE-E---EESL--- 603 (1228)
T ss_pred EEeeehh--hhhccCEEEEEECCEEEEecCHHHHHhc---cc-------hHHHHHHHHhhhhhhhccc-c---ccch---
Confidence 7777654 6777999999999999999999999852 01 01111 122222111000 0 0000
Q ss_pred ChhHHHHHHHhCc------chhhHHhhh-cCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Q 037155 494 PVSDFVEGFKSFH------MGQQLASDL-RVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQ 566 (1403)
Q Consensus 494 ~~~e~~~~~~~s~------~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~ 566 (1403)
.++.....+.+. ......... ..+.++....+ ...+....++|+.++.+. .+|..+.--....+.+-..
T Consensus 604 -~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~s~~~i~k~~~-pe~~~l~lG~i~a~i~G~~ 679 (1228)
T KOG0055|consen 604 -KEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEP--VSEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGAT 679 (1228)
T ss_pred -hhhhhhccccccccccccCCccccccccccccccccccc--cccccccccHHHHHHhcc-chhHHHHHHHHHHHHhhhh
Confidence 000000000000 000000000 00000000000 011112344555443222 1222221111111222222
Q ss_pred HHHHHHHHHHhhhcccCCC-CCccCcchhhhHHHHHHH----------HHHHHHHHHHHHHHhhhhHHHH--hhhccccc
Q 037155 567 LTFMSLICMTVFFRTEMSV-GDLEGGNKYFGALFFSLL----------NIMFNGMAELSMTVLRLPVFYK--QRDHLFYP 633 (1403)
Q Consensus 567 ~~i~ali~g~vf~~~~~~~-~~~~~~~~~~g~lff~l~----------~~~~~~~~~l~~~~~~~pvf~k--qr~~~~y~ 633 (1403)
..+.+++++.++--..... +........+..+|..+. ..+|.-++|....-.|...|.+ ..+..||.
T Consensus 680 ~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD 759 (1228)
T KOG0055|consen 680 YPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFD 759 (1228)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 3334444444332111111 111111222444433222 2233344444444444445543 12333332
Q ss_pred hh--HHHHHHHH-HHhh---------HHH----HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037155 634 AW--AFALPIWV-LRIP---------LSL----LDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAI 697 (1403)
Q Consensus 634 ~~--ay~la~~l-~~iP---------~~~----~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~ 697 (1403)
-- .-.+..-+ .+.| ++. +..++..+++-|..|..-..--...+.++ ........+++...
T Consensus 760 ~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll----~~~~~~~~~~~~~~ 835 (1228)
T KOG0055|consen 760 DPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLL----ILSGYLQKKFLKGF 835 (1228)
T ss_pred CCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 10 01111111 1111 000 11111111111111111000000000000 00011111111111
Q ss_pred hccHH----HHH-----HHHHHHHHH--------HHHHhhhcccCC--Cc-hhhHH---------HHHHHcHHHHHHHHH
Q 037155 698 GRTEV----ITN-----ALGTFALLL--------IFSLGGFIIAKD--DI-EPFLE---------WGYYVSPMMYGQTSI 748 (1403)
Q Consensus 698 ~~~~~----va~-----~~~~~~l~~--------~~l~~Gf~i~~~--~i-p~~~~---------w~~~isp~~Y~~~al 748 (1403)
..... -|. ++..+=.+. +-++.--...+. .+ ..||. .+|+..-+.|-+.+.
T Consensus 836 ~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~ 915 (1228)
T KOG0055|consen 836 SKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGAR 915 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11100 000 000000000 000000000000 00 00000 011122222222222
Q ss_pred HHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCceeeec
Q 037155 749 LVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFL-FIAALTYLNPIGDSNSTVVEE 827 (1403)
Q Consensus 749 ~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l-~~l~l~~~~~~~~~~~~~~~~ 827 (1403)
++.. ....-.++.+ +..+ +.|... ..-+..|...+
T Consensus 916 Li~~----------------g~~~~~~~~~----------------vf~~--l~~ta~~~~~~~s~~Pd~---------- 951 (1228)
T KOG0055|consen 916 LISN----------------GEMTFEDVFR----------------VFMA--LSFTAMALGQASSYAPDI---------- 951 (1228)
T ss_pred HHhc----------------CCcCHHHHHH----------------HHHH--HHHHHHHHHHHHhhCcHH----------
Confidence 2220 0000000000 0000 001000 00111111100
Q ss_pred cccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccceEeeeeEEE
Q 037155 828 DGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGA 907 (1403)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~ 907 (1403)
.+...+.....+..+..... + .. ...+...+...-.++|+|+++.++..+ ..+||+|+|++
T Consensus 952 -~ka~~Aa~~iF~i~dr~~~i----~--~~--~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~ 1012 (1228)
T KOG0055|consen 952 -SKAKIAAGSIFEILDRKPTI----D--PD--STSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLS 1012 (1228)
T ss_pred -HHHHHHHHHHHHHhcCCCCC----C--CC--CCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEE
Confidence 00000000000000000000 0 00 011222233334689999999887543 46799999999
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAW 984 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 984 (1403)
|++|+.+||+|||||||||.+.+|-+..+ +..|.|.|||++++. ..+|+.+|.|.|+|.++. -|++||+.|+.
T Consensus 1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~- 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS- 1088 (1228)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-
Confidence 99999999999999999999999987654 457999999998654 567889999999999974 69999999981
Q ss_pred hhCCCCCcHHHHHHHHHHHHHH-------cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 985 LRLSSDVDTKKRKIFVDEVMEL-------VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 985 lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
.+.+.++ +.++++. .+|.+-.|+.+|..|. +||||||||++|||||++||+||+|||+||.||+
T Consensus 1089 ----~~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1089 ----EEVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred ----CCCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 1133332 2333333 2556677999998776 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++.+.|++.|++.. .|||.|+++|+++ ..+.+|.|.|++ +|++++.|.-
T Consensus 1160 eSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1160 ESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred hhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEE-CCEEEecccH
Confidence 99999999999975 5999999999987 467899999998 5899999973
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-74 Score=723.60 Aligned_cols=566 Identities=26% Similarity=0.410 Sum_probs=471.8
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC
Q 037155 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV 260 (1403)
Q Consensus 181 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~ 260 (1403)
..++++|+||+|.++||.+|||||+|||||||||++|||+...+ .++|+|++||++.++..
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-------------------~I~Gdi~i~G~p~~q~t 861 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-------------------YIEGDILISGFPKDQET 861 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-------------------eEEeEEEECCeeCchhh
Confidence 35678999999999999999999999999999999999997543 27999999999998777
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.+|.+|||.|+|.|.+++||||.|.|+|.++.+. +++..|| ...+|+++
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~-------~v~~~ek------------------------~~yVe~Vi 910 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPK-------EVSDEEK------------------------YEYVEEVI 910 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCC-------cCCHHHH------------------------HHHHHHHH
Confidence 8899999999999999999999999999887543 2222221 23578999
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAA-KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p-~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
+.++|++++|.+||+.. .|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|++++ .|+||+|+||
T Consensus 911 ~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIH 988 (1391)
T KOG0065|consen 911 ELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIH 988 (1391)
T ss_pred HHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 99999999999999865 999999999999999999999 99999999999999999999999999998 6999999999
Q ss_pred cCchhHHhhcCEEEEEcC-CeEEEecChh----hHHHHHHHcC-CCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCC
Q 037155 420 QPAPETYDLFDDIILISE-GQIVYHGPRD----NVLEFFEQMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYI 493 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~-G~iv~~G~~~----~~~~~F~~~G-~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~ 493 (1403)
||+.++++.||++++|.. |++||.||.. .+++|||+.| .+||...|||||..|+++...+..
T Consensus 989 QPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------ 1056 (1391)
T KOG0065|consen 989 QPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------ 1056 (1391)
T ss_pred CCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------
Confidence 999999999999999965 7999999975 4677999987 899999999999999987644321
Q ss_pred ChhHHHHHHHhCcchhhHHhhhcCCCCCCCC-CccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 037155 494 PVSDFVEGFKSFHMGQQLASDLRVPYDKSQT-HPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSL 572 (1403)
Q Consensus 494 ~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~al 572 (1403)
...++++.|++|..+++..++++.-.+..+. .........|..|.|.|++.|++|+++..||++.+...|.+..++.++
T Consensus 1057 ~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl 1136 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGL 1136 (1391)
T ss_pred cCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 1237899999999988877665432222111 223334556889999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHH
Q 037155 573 ICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNG-MAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLL 651 (1403)
Q Consensus 573 i~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~-~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~ 651 (1403)
++|..||+.+. +.++.++.+|++|.+++...-+. .........++-+++|||..+.|+..+|+++..++++|+.++
T Consensus 1137 ~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~ 1213 (1391)
T KOG0065|consen 1137 FIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLL 1213 (1391)
T ss_pred hheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999983 45566778888887766544322 223445566888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhh
Q 037155 652 DSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPF 731 (1403)
Q Consensus 652 ~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~ 731 (1403)
.+++|.+++|+++|+...+.+++.+++..++.......++.++.+++|+..+|..+.++++.++.+|+||++|+..||.|
T Consensus 1214 ~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~f 1293 (1391)
T KOG0065|consen 1214 QSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKF 1293 (1391)
T ss_pred HHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcHHHHHHHHHHHHhhcCCcCccCCCCCC----ccccchhhhhhhhcC----ccccccchhhhHHHHHHHHHHH
Q 037155 732 LEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRS----INERTLGKALLKRRG----FYNDSYWYWIGIGALIGFSFLF 803 (1403)
Q Consensus 732 ~~w~~~isp~~Y~~~al~~nef~~~~~~~~~~~~~----~~~~~~G~~~L~~~~----~~~~~~~~w~~~g~l~g~~v~f 803 (1403)
|+|+||+||..|..++++...+++..-.|...+.. .+..+.|+.+...+| +..+..-+ ...+..+|.+.+
T Consensus 1294 W~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~--~~c~~c~y~v~~ 1371 (1391)
T KOG0065|consen 1294 WIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT--TACVYCAYTVAD 1371 (1391)
T ss_pred eeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce--eEEEEeeeehHH
Confidence 99999999999999999999998876555432211 123456666555555 43322111 111223455566
Q ss_pred HHHHHHHHHhcC
Q 037155 804 NFLFIAALTYLN 815 (1403)
Q Consensus 804 ~~l~~l~l~~~~ 815 (1403)
.+++.+.++|.+
T Consensus 1372 ~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1372 AFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-72 Score=755.06 Aligned_cols=563 Identities=26% Similarity=0.389 Sum_probs=463.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
++++|+|||+.++|||+++|+|||||||||||++|+|+.+++ .+.+|+|.+||++++. ..+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g------------------~~~~G~I~i~G~~~~~-~~~ 835 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG------------------VITGGDRLVNGRPLDS-SFQ 835 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC------------------CcceeEEEECCEECCh-hhh
Confidence 457999999999999999999999999999999999998532 1357999999998753 346
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|+|.+++.+||+|||.|+++++.+.. .++.+ ....++.+++.
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~-------~~~~~------------------------~~~~v~~~l~~ 884 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKS-------VSKSE------------------------KMEYVEEVIKL 884 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCC-------CCHHH------------------------HHHHHHHHHHH
Confidence 789999999999999999999999876643210 00000 11246778999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK-VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~-illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+||++++|+.||+. +.+|||||||||+||++|+.+|+ +|||||||||||+.++.+|++.|+++++ .|+|+|+++|||
T Consensus 885 l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~ 962 (1394)
T TIGR00956 885 LEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQP 962 (1394)
T ss_pred cCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 99999999999953 44899999999999999999997 9999999999999999999999999976 589999999999
Q ss_pred chhHHhhcCEEEEEcCC-eEEEecCh----hhHHHHHHHcCC-CCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCCh
Q 037155 422 APETYDLFDDIILISEG-QIVYHGPR----DNVLEFFEQMGF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPV 495 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G-~iv~~G~~----~~~~~~F~~~G~-~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~ 495 (1403)
+..+++.||+|++|++| +++|+|+. +++.+||++.|+ +||+..|||||+.++.+...... ..
T Consensus 963 ~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~ 1030 (1394)
T TIGR00956 963 SAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------AN 1030 (1394)
T ss_pred CHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hh
Confidence 98888999999999997 99999997 578999999996 99999999999999876432110 01
Q ss_pred hHHHHHHHhCcchhhHHhhhcC---CCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 037155 496 SDFVEGFKSFHMGQQLASDLRV---PYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSL 572 (1403)
Q Consensus 496 ~e~~~~~~~s~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~al 572 (1403)
.++.+.|+.+...+...+++.. +..............++..++|.|++.+++|.++.++||+.+...|+++.+++|+
T Consensus 1031 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l 1110 (1394)
T TIGR00956 1031 QDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAAL 1110 (1394)
T ss_pred ccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2455666666554444332211 1111100001112246788999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhhhccccchhHHHHHHHHHHhhHHHH
Q 037155 573 ICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVF-YKQRDHLFYPAWAFALPIWVLRIPLSLL 651 (1403)
Q Consensus 573 i~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf-~kqr~~~~y~~~ay~la~~l~~iP~~~~ 651 (1403)
++|++|++.+.+ ..+.++..|++|+.++...+.....++..+.++.++ +|||..++|++++|++++.+.++|+.++
T Consensus 1111 ~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~ 1187 (1394)
T TIGR00956 1111 FIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLV 1187 (1394)
T ss_pred HHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999998753 334567788888877765554444555566667664 8999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhccc
Q 037155 652 DSTIWIVLTYYTIGFAPAASR-------FFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIA 724 (1403)
Q Consensus 652 ~~~i~~~i~Y~~~gl~~~~~~-------ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~ 724 (1403)
.+++|.+++||++|+.+++.. |+.++++.++...++.+++.++++++++..+|..++++++.++++|+||+++
T Consensus 1188 ~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~ 1267 (1394)
T TIGR00956 1188 AGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAP 1267 (1394)
T ss_pred HHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999999999887755 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHcHHHHHHHHHHHHhhcCCcCccCCC-------------------------------CC----Cccc
Q 037155 725 KDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSG-------------------------------DR----SINE 769 (1403)
Q Consensus 725 ~~~ip~~~~w~~~isp~~Y~~~al~~nef~~~~~~~~~~-------------------------------~~----~~~~ 769 (1403)
.++||+||+|++|+||+.|++++++.|||.+....|... +. .+|.
T Consensus 1268 ~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~ 1347 (1394)
T TIGR00956 1268 PSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQ 1347 (1394)
T ss_pred hhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCC
Confidence 999999999999999999999999999999887655321 00 1223
Q ss_pred cchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037155 770 RTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 815 (1403)
Q Consensus 770 ~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~ 815 (1403)
...|.++|+.+++...+ .|.+++++++|.+++ ++.++++.|..
T Consensus 1348 ~~~~~~~l~~~~~~~~~--~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956 1348 YSYTNDFLEPISSKYSG--RWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred CCCHHHHHHHcCCcccc--cccchhhhhHHHHHH-HHHHHhhheEE
Confidence 56889999988886655 488999999998877 66777777653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-71 Score=711.00 Aligned_cols=748 Identities=20% Similarity=0.260 Sum_probs=424.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
.+.|+|||+.|++|+++||+||.|||||+||.+|.|+++. .+|+|.++|
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---------------------~sG~v~v~g---------- 582 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---------------------LSGSVAVNG---------- 582 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---------------------ccceEEEcC----------
Confidence 3489999999999999999999999999999999999964 689999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.+|||+|++|++.. ||||||.|+.... ..| +++.+++|++.. +.-
T Consensus 583 siaYv~Q~pWI~ng-TvreNILFG~~~d--~~r---------------------Y~~Vi~aC~L~~-----------Dle 627 (1381)
T KOG0054|consen 583 SVAYVPQQPWIQNG-TVRENILFGSPYD--EER---------------------YDKVIKACALKK-----------DLE 627 (1381)
T ss_pred eEEEeccccHhhCC-cHHHhhhcCcccc--HHH---------------------HHHHHHHccCHh-----------HHh
Confidence 59999999999965 9999999974321 122 445566665432 122
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
-|+.+..|.||+ +|.+||||||||+++|||++++++|++||+|.|++|+++..+|.+.+-. ....++|+|+.+||-
T Consensus 628 ~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~-~~L~~KT~ILVTHql-- 703 (1381)
T KOG0054|consen 628 ILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR-GLLRGKTVILVTHQL-- 703 (1381)
T ss_pred hcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH-hhhcCCEEEEEeCch--
Confidence 378899999995 6677999999999999999999999999999999999999999865552 234579999998854
Q ss_pred hHHhhcCEEEEEcCCeEEEecChhhHHH---HHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHH
Q 037155 424 ETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVE 500 (1403)
Q Consensus 424 ~~~~~fD~IilL~~G~iv~~G~~~~~~~---~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~ 500 (1403)
+....+|.|++|++|+|...|+++|+.+ .|+++ .. +....++.+ .....+.......+. +
T Consensus 704 ~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l-~~------------~~~~~~~~~---~~~~~~~~~~~~~~~-~ 766 (1381)
T KOG0054|consen 704 QFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAEL-AH------------EEESEQEEE---ASEKDLESGESSRES-E 766 (1381)
T ss_pred hhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHH-hh------------ccchhhccc---cccccccccccccch-h
Confidence 6889999999999999999999999983 33332 00 000000000 000000000000000 0
Q ss_pred HHHhCcchhhHHhhhcCCCCCCC-CCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHH-HHHHHHHHHHHHHHHhh
Q 037155 501 GFKSFHMGQQLASDLRVPYDKSQ-THPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYI-FKTFQLTFMSLICMTVF 578 (1403)
Q Consensus 501 ~~~~s~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~-~~~~~~~i~ali~g~vf 578 (1403)
. +.........+. ...++.+ ...........+.-.|..++.+++-. ....... .-+.+.....+.++.-|
T Consensus 767 ~-~~~~~~~~~~~~--~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~-----~g~~~~~~~~~~~v~~~~~~~~~~~ 838 (1381)
T KOG0054|consen 767 S-RSLESLSSEEEK--SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAA-----GGFLLVLLILLLFVLTQVLQIASNY 838 (1381)
T ss_pred h-hhhhhhcccccc--cccccchhhHHHHHHHHhcCEeeHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000 0000000 00000011133444555555444320 1111111 11122222222222222
Q ss_pred hcccCCCCC---c---cCcchhhhHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHH
Q 037155 579 FRTEMSVGD---L---EGGNKYFGALFFS-LLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLL 651 (1403)
Q Consensus 579 ~~~~~~~~~---~---~~~~~~~g~lff~-l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~ 651 (1403)
|-..+...+ . .+...+.+..... +...++.....+......+..-.+ ++ -.+-..+.+.|++|+
T Consensus 839 WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~-----Lh----~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 839 WLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRK-----LH----DKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----HHHHHHHHhCcchhc
Confidence 221111111 1 1111222211111 111111111111111110000000 00 012233555666665
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH-----HHHHHHHHHHHHhhhcccCC
Q 037155 652 DSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNA-----LGTFALLLIFSLGGFIIAKD 726 (1403)
Q Consensus 652 ~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~-----~~~~~l~~~~l~~Gf~i~~~ 726 (1403)
+++ +.||+++++++++..... +..++..+ +.+.|.++...
T Consensus 910 dtT----------------------------------P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~-~~~l~~~~vi~ 954 (1381)
T KOG0054|consen 910 DTT----------------------------------PTGRILNRFSKDIDTVDVLLPFTLEFFLQSL-LNVLGILVVIS 954 (1381)
T ss_pred CCC----------------------------------CccchhhhcccchHHHHHhhHHHHHHHHHHH-HHHHHHHHHhh
Confidence 543 345555555554432221 11111111 11112221111
Q ss_pred Cchhh-------HHHHHHHcHHHHHHHHHHHHhhcC---------------CcCccCCCCCCccccchhhhhhhhcCccc
Q 037155 727 DIEPF-------LEWGYYVSPMMYGQTSILVDEFLD---------------GRWDVPSGDRSINERTLGKALLKRRGFYN 784 (1403)
Q Consensus 727 ~ip~~-------~~w~~~isp~~Y~~~al~~nef~~---------------~~~~~~~~~~~~~~~~~G~~~L~~~~~~~ 784 (1403)
...|| +.++||.-..+|...+..+....+ +.....+.+. ....-.......+.+.
T Consensus 955 ~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~---~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 955 YVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK---EERFIQENDELIDENS 1031 (1381)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc---cHHHHHHHHHHhhhhH
Confidence 22222 234566667777777655544332 2222222111 1111122222223333
Q ss_pred cccc------hhhhHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCceeeeccc-------cccccCCCcccccccccccc-
Q 037155 785 DSYW------YWIGIGALIGFSFLFNFLFIAALTYLNP-IGDSNSTVVEEDG-------DKKRASGNEVEGTQMTVRSS- 849 (1403)
Q Consensus 785 ~~~~------~w~~~g~l~g~~v~f~~l~~l~l~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~- 849 (1403)
..++ .|.++..-+.-.+++.+.+.+++..... ...+...++.... .+.-....+.+....++++.
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~ 1111 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVL 1111 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 3332 2666544332222222222222222221 1111111110000 00000000000000001000
Q ss_pred ------------ccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEE
Q 037155 850 ------------TEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALM 917 (1403)
Q Consensus 850 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 917 (1403)
.+....+.+||..| .++|+|++-++. .+-..+|||||++|+|||++||+
T Consensus 1112 eY~~~~~E~p~~~~~~~pp~~WP~~G--------~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIV 1172 (1381)
T KOG0054|consen 1112 EYTDIPSEAPLEIEESRPPPSWPSKG--------EIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIV 1172 (1381)
T ss_pred HHhcCCCCCCCCCcCCCCCCCCCCCC--------eEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEe
Confidence 00011344566555 468887653331 12245999999999999999999
Q ss_pred ccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHH
Q 037155 918 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTK 994 (1403)
Q Consensus 918 G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~ 994 (1403)
|++|||||||+++|.+..++ .+|+|.|||.++.+ .++|++++.+||+|.++.. |+|.|| |+..+
T Consensus 1173 GRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NL----------DPf~e 1239 (1381)
T KOG0054|consen 1173 GRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNL----------DPFDE 1239 (1381)
T ss_pred CCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-cccccc----------Ccccc
Confidence 99999999999999997763 47999999998765 5678899999999988753 666665 45556
Q ss_pred HHHHHHHHHHHHcCCCCcc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 037155 995 KRKIFVDEVMELVELKPLR-------DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067 (1403)
Q Consensus 995 ~~~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l 1067 (1403)
..++.++++||..+|.+.. |..+.. +..++|.||||.+|+||||+++++||+|||+|+++|+++...|+++|
T Consensus 1240 ~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tI 1318 (1381)
T KOG0054|consen 1240 YSDDEIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318 (1381)
T ss_pred cCHHHHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHH
Confidence 6677789999999887543 444443 34569999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1068 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1068 ~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+-.+ +||||++.|+.+. + -.+|||+||++ |+++++|++
T Consensus 1319 R~~F~-dcTVltIAHRl~T-V-md~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1319 REEFK-DCTVLTIAHRLNT-V-MDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHhc-CCeEEEEeeccch-h-hhcCeEEEeeC-CeEeecCCh
Confidence 99875 7999999999873 4 45799999986 789888876
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-69 Score=722.71 Aligned_cols=201 Identities=28% Similarity=0.435 Sum_probs=178.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCCH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|++... ...++.+|||+|++.+++.+||
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 5799999999999999999999999999999999998663 47999999988642 2345679999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+|++.+.+.++. .+.++.++.++++++.++|.+.+|+.++ .|||||||||+||+||+.+|+||||||||+||
T Consensus 2030 ~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999998776653 2334445668899999999988888755 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|.+ |++++.|+.
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~ 2154 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI 2154 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999878999999999986 67889999999985 899999985
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=709.34 Aligned_cols=210 Identities=24% Similarity=0.315 Sum_probs=175.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|+++++.. +...+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEec
Confidence 5899999876631 123599999999999999999999999999999999998664 479999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
.+ ..+|+.++||||++.++.. |++|||.+.. ..+ ++.++++++..++.+ -.|+.+|..|
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 53 5678899999999999875 9999997532 112 234677777777643 3466677544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1373 -~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1373 -ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 3699999999999999999999999999999999999999999999986 4899999999986 4567999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1448 G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 GRVVEFDTP 1456 (1622)
T ss_pred CEEEEeCCH
Confidence 899999975
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-66 Score=705.31 Aligned_cols=210 Identities=22% Similarity=0.305 Sum_probs=175.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++++++. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEh
Confidence 5889999877621 124699999999999999999999999999999999998663 479999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1021 (1403)
.+ ..+++.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 43 5678899999999999875 9999997531 122 2346778887777543 466676544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
.+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1370 -~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1370 -ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999975 4899999999985 4566999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 899999874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-65 Score=603.10 Aligned_cols=475 Identities=27% Similarity=0.352 Sum_probs=356.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
..+++||||.+.+||+++|+|.|||||||+.++|.|.++++.. ..+|+|.++|.++.....
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~-----------------~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR-----------------ITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc-----------------ccceEEEECCcchhcCCHHH
Confidence 5799999999999999999999999999999999999986532 268999999987654432
Q ss_pred -----cceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 262 -----QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 262 -----~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
.+.+|||+|++ .+.|-+||.+-|.=..+.++... + .+...
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~---------~------------------------~ea~~ 131 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS---------R------------------------AEARK 131 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------H------------------------HHHHH
Confidence 26899999997 56777899998865544332111 0 01122
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 335 ~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
++.++|+..||++.... +.+.+.|||||||||.||+||+.+|++|++||||++||+.++.+|.++|+++.++.|.++
T Consensus 132 ~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~ 208 (539)
T COG1123 132 RAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAV 208 (539)
T ss_pred HHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEE
Confidence 45678999999987665 456678999999999999999999999999999999999999999999999998888777
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCC
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIP 494 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~ 494 (1403)
+++.| ...-+.+++|+|+||++|++|+.|+.+++... |.+ ||..
T Consensus 209 l~ITH-Dl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~--------p~h-------------------------pYT~-- 252 (539)
T COG1123 209 LFITH-DLGVVAELADRVVVMYKGEIVETGPTEEILSN--------PQH-------------------------PYTR-- 252 (539)
T ss_pred EEEcC-CHHHHHHhcCeEEEEECCEEEEecCHHHHHhc--------cCC-------------------------cccH--
Confidence 77655 44577889999999999999999999988531 111 1100
Q ss_pred hhHHHHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 037155 495 VSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLIC 574 (1403)
Q Consensus 495 ~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~ 574 (1403)
.+.+. .|..
T Consensus 253 ---------------~Ll~a--~p~~------------------------------------------------------ 261 (539)
T COG1123 253 ---------------GLLAA--VPRL------------------------------------------------------ 261 (539)
T ss_pred ---------------HHHhh--CCCc------------------------------------------------------
Confidence 00000 0000
Q ss_pred HHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHH
Q 037155 575 MTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDST 654 (1403)
Q Consensus 575 g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~ 654 (1403)
.....
T Consensus 262 -----------~~~~~---------------------------------------------------------------- 266 (539)
T COG1123 262 -----------GDEKI---------------------------------------------------------------- 266 (539)
T ss_pred -----------ccccc----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHH
Q 037155 655 IWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEW 734 (1403)
Q Consensus 655 i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w 734 (1403)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 037155 735 GYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYL 814 (1403)
Q Consensus 735 ~~~isp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~ 814 (1403)
.+.. .... .
T Consensus 267 ----------------------~~~~-~~~~---~--------------------------------------------- 275 (539)
T COG1123 267 ----------------------IRLP-RRGP---L--------------------------------------------- 275 (539)
T ss_pred ----------------------cccc-cccc---c---------------------------------------------
Confidence 0000 0000 0
Q ss_pred CCCCCCCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccc
Q 037155 815 NPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVG 894 (1403)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 894 (1403)
+ ...-++.+|++-.+..+..+. ...
T Consensus 276 ----------------------------------------------------~-~~~ll~V~~l~k~y~~~~~~~--~~~ 300 (539)
T COG1123 276 ----------------------------------------------------R-AEPLLSVRNLSKRYGSRKGLF--VRE 300 (539)
T ss_pred ----------------------------------------------------c-cCceeEeeeeeeeeccccccc--ccc
Confidence 0 000112222221111111000 000
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC--C---hhhhcceeeEeecCC--
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--K---QETFARVSGYCEQTD-- 967 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~-- 967 (1403)
.+...+++||||.+++||++||+|+||||||||.++|+|..++ ..|.|.++|.+. + ....++.+-+++|++
T Consensus 301 ~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 1235699999999999999999999999999999999998764 479999999762 1 123456788889887
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
.+.|.+||++.+.......... ...++++++.++++.++|.. ..+++ +.+||||||||++|||||+.+|++|
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~ll 451 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLL 451 (539)
T ss_pred ccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEE
Confidence 4679999999998776544322 24566778999999999985 45555 4589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++|||||.||+..+..|.++|+++.++ |.|.|++|||++ -+...|||+.+|.+ |++++.||.
T Consensus 452 i~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 452 ILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred EecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999999999999999999765 999999999987 47889999999985 899999984
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=685.95 Aligned_cols=216 Identities=20% Similarity=0.324 Sum_probs=177.0
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-------------
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------- 938 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------------- 938 (1403)
.++|+|++|.++.. ++.++|+|+|++|+||+++||+||||||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58999999876421 1246999999999999999999999999999999999965531
Q ss_pred ---------------------------------------eeEEEEEEcCccCC---hhhhcceeeEeecCCCCCCCCCHH
Q 037155 939 ---------------------------------------YIEGDIKISGYPKK---QETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 939 ---------------------------------------~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|.+||.++. ...+++.+|||+|++.++ +.|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 13799999999864 356788999999999887 57999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
|||.|+. .+.+. +.++++++..++.+ -.|+.+|..|. .||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 12222 23566666666543 45788886544 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC---cE-EEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG---GR-VIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g---G~-~~~~g~~ 1110 (1403)
||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.||+|++|++| |+ +++.|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 35899999999985 56789999999872 66 5578873
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-63 Score=676.21 Aligned_cols=210 Identities=21% Similarity=0.253 Sum_probs=175.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++++++. +...+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEc
Confidence 5899999887632 113599999999999999999999999999999999997663 479999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
.+ ..+++.++||||++.+++. |++|||.... +.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 54 5678899999999999875 9999996211 122 233677888887754 3466677544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1420 -~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1420 -ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred -CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 4899999999985 4567899999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 899999975
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=615.32 Aligned_cols=460 Identities=25% Similarity=0.336 Sum_probs=345.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +.+|+|.++|+++.....
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-------------------~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-------------------TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-------------------CCCeEEEECCEECCCCCHHH
Confidence 46999999999999999999999999999999999988641 258999999988754332
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.|+......+. . +. +. ....++.+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-----------------~-~~--~~-----------~~~~~~~~ 127 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGI-----------------M-DY--DA-----------MYLRAQKL 127 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCC-----------------c-CH--HH-----------HHHHHHHH
Confidence 3569999999999999999999988643211000 0 00 00 01134567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|++.|
T Consensus 128 l~~~~l~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH 201 (506)
T PRK13549 128 LAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISH 201 (506)
T ss_pred HHHcCCCCCcccchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 8999998888888865 999999999999999999999999999999999999999999999865 4778887766
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 499 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~ 499 (1403)
++ .++.+.+|+|++|++|++++.|+.+++.. .+. .
T Consensus 202 ~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~~---------------~~~-----------------------------~ 236 (506)
T PRK13549 202 KL-NEVKAISDTICVIRDGRHIGTRPAAGMTE---------------DDI-----------------------------I 236 (506)
T ss_pred cH-HHHHHhcCEEEEEECCEEeeecccccCCH---------------HHH-----------------------------H
Confidence 54 47788999999999999998886543200 000 0
Q ss_pred HHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhh
Q 037155 500 EGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFF 579 (1403)
Q Consensus 500 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~ 579 (1403)
+. +.
T Consensus 237 ~~----------------------------------------------------------------------------~~ 240 (506)
T PRK13549 237 TM----------------------------------------------------------------------------MV 240 (506)
T ss_pred HH----------------------------------------------------------------------------hh
Confidence 00 00
Q ss_pred cccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHH
Q 037155 580 RTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVL 659 (1403)
Q Consensus 580 ~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i 659 (1403)
T Consensus 241 -------------------------------------------------------------------------------- 240 (506)
T PRK13549 241 -------------------------------------------------------------------------------- 240 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHc
Q 037155 660 TYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVS 739 (1403)
Q Consensus 660 ~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~is 739 (1403)
|-.
T Consensus 241 -----~~~------------------------------------------------------------------------ 243 (506)
T PRK13549 241 -----GRE------------------------------------------------------------------------ 243 (506)
T ss_pred -----CcC------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037155 740 PMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGD 819 (1403)
Q Consensus 740 p~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~~ 819 (1403)
. ... . +
T Consensus 244 --------------------~-------~~~-------------------------------------------~-~--- 249 (506)
T PRK13549 244 --------------------L-------TAL-------------------------------------------Y-P--- 249 (506)
T ss_pred --------------------c-------ccc-------------------------------------------c-c---
Confidence 0 000 0 0
Q ss_pred CCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccce
Q 037155 820 SNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ 899 (1403)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 899 (1403)
. . .. . + + ..-+.++|+++.++. .+++.
T Consensus 250 ---------~----------~----~~---------~---~--~------~~~l~~~~l~~~~~~----------~~~~~ 276 (506)
T PRK13549 250 ---------R----------E----PH---------T---I--G------EVILEVRNLTAWDPV----------NPHIK 276 (506)
T ss_pred ---------c----------c----cc---------C---C--C------CceEEEecCcccccc----------ccccc
Confidence 0 0 00 0 0 0 001334444332100 01245
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCC---CCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTD---IHSPH 972 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ 972 (1403)
+|+||||+|++||++||+||||||||||+++|+|...+ +.+|+|.++|.+... ...++.+||++|++ .+++.
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 89999999999999999999999999999999997541 137999999976532 12345689999985 46788
Q ss_pred CCHHHHHHHHHhhhCC--CCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 973 VTLYESLLYSAWLRLS--SDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
+||.|++.+....... .....++..+.++++++.+++. +..++.++ .|||||||||+||++|+.+|+|||||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLD 430 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILD 430 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 9999999875321111 0012233445688999999996 46676544 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
|||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 431 EPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 431 EPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred CCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 999999999999999999999888999999999986 57789999999985 78888887653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-63 Score=615.05 Aligned_cols=450 Identities=22% Similarity=0.344 Sum_probs=342.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR---------------------DAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999987754221
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.|+......... . +. . +....++.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~------~-----------~~--~-----------~~~~~~~~~ 125 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGR------I-----------DW--K-----------KMYAEADKL 125 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCc------c-----------CH--H-----------HHHHHHHHH
Confidence 35699999999999999999999986432100000 0 00 0 001134567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..|..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|+|++.|
T Consensus 126 l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sH 199 (501)
T PRK10762 126 LARLNLRFSSDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISH 199 (501)
T ss_pred HHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 8999999888888876 999999999999999999999999999999999999999999999865 4778777765
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 499 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~ 499 (1403)
++ .++.+++|+|++|++|+++..|+.+++.. .+ ..
T Consensus 200 d~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---------------~~-----------------------------~~ 234 (501)
T PRK10762 200 RL-KEIFEICDDVTVFRDGQFIAEREVADLTE---------------DS-----------------------------LI 234 (501)
T ss_pred CH-HHHHHhCCEEEEEeCCEEEEecCcCcCCH---------------HH-----------------------------HH
Confidence 54 57889999999999999998876543200 00 00
Q ss_pred HHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhh
Q 037155 500 EGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFF 579 (1403)
Q Consensus 500 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~ 579 (1403)
+.+ +
T Consensus 235 ~~~----------------------------------------------------------------------------~ 238 (501)
T PRK10762 235 EMM----------------------------------------------------------------------------V 238 (501)
T ss_pred HHh----------------------------------------------------------------------------c
Confidence 000 0
Q ss_pred cccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHH
Q 037155 580 RTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVL 659 (1403)
Q Consensus 580 ~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i 659 (1403)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK10762 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHc
Q 037155 660 TYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVS 739 (1403)
Q Consensus 660 ~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~is 739 (1403)
+
T Consensus 239 -----~-------------------------------------------------------------------------- 239 (501)
T PRK10762 239 -----G-------------------------------------------------------------------------- 239 (501)
T ss_pred -----C--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037155 740 PMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGD 819 (1403)
Q Consensus 740 p~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~~ 819 (1403)
.......+..
T Consensus 240 ----------------~~~~~~~~~~------------------------------------------------------ 249 (501)
T PRK10762 240 ----------------RKLEDQYPRL------------------------------------------------------ 249 (501)
T ss_pred ----------------CCcccccccc------------------------------------------------------
Confidence 0000000000
Q ss_pred CCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccce
Q 037155 820 SNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ 899 (1403)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 899 (1403)
. . + + .+..+.++|++ ..
T Consensus 250 -------------------------~---------~----~------~-~~~~l~~~~l~------------------~~ 266 (501)
T PRK10762 250 -------------------------D---------K----A------P-GEVRLKVDNLS------------------GP 266 (501)
T ss_pred -------------------------c---------c----C------C-CCcEEEEeCcc------------------cC
Confidence 0 0 0 0 00123444442 12
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCC---CCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTD---IHSPH 972 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ 972 (1403)
+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 69999999999999999999999999999999997653 47999999977532 12345699999995 47789
Q ss_pred CCHHHHHHHHHhhhCC---CCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 973 VTLYESLLYSAWLRLS---SDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+||.|++.+....... .....++.++.++++++.++|. +..++.++ .|||||||||+||++|+.+|+||||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321110 0012233345688999999995 56676644 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+...
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999878999999999986 57889999999985 78988887653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=617.23 Aligned_cols=458 Identities=22% Similarity=0.308 Sum_probs=343.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---------------------TKGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC---------------------CccEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999988765432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.++...... .+ +.. ..+.+ +....++.+
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~-------------~~~-~~~~~-----------~~~~~~~~~ 129 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKK--VC-------------GVN-IIDWR-----------EMRVRAAMM 129 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccc--cc-------------ccc-ccCHH-----------HHHHHHHHH
Confidence 24699999999999999999999875321000 00 000 00000 001234667
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|
T Consensus 130 l~~~gl~~~~~~~~~~-----LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH 203 (510)
T PRK09700 130 LLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISH 203 (510)
T ss_pred HHHcCCCCCcccchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 8999999888888876 999999999999999999999999999999999999999999999976 4778777765
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 499 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~ 499 (1403)
+ ..++.+++|+|++|++|++++.|+++++.. .+. .
T Consensus 204 d-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---------------~~~-----------------------------~ 238 (510)
T PRK09700 204 K-LAEIRRICDRYTVMKDGSSVCSGMVSDVSN---------------DDI-----------------------------V 238 (510)
T ss_pred C-HHHHHHhCCEEEEEECCEEeeecchhhCCH---------------HHH-----------------------------H
Confidence 4 457888999999999999999887654310 000 0
Q ss_pred HHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhh
Q 037155 500 EGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFF 579 (1403)
Q Consensus 500 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~ 579 (1403)
+. +.
T Consensus 239 ~~----------------------------------------------------------------------------~~ 242 (510)
T PRK09700 239 RL----------------------------------------------------------------------------MV 242 (510)
T ss_pred HH----------------------------------------------------------------------------hc
Confidence 00 00
Q ss_pred cccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHH
Q 037155 580 RTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVL 659 (1403)
Q Consensus 580 ~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i 659 (1403)
+ ...
T Consensus 243 --~---~~~----------------------------------------------------------------------- 246 (510)
T PRK09700 243 --G---REL----------------------------------------------------------------------- 246 (510)
T ss_pred --C---CCc-----------------------------------------------------------------------
Confidence 0 000
Q ss_pred HhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHc
Q 037155 660 TYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVS 739 (1403)
Q Consensus 660 ~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~is 739 (1403)
.
T Consensus 247 -------~------------------------------------------------------------------------ 247 (510)
T PRK09700 247 -------Q------------------------------------------------------------------------ 247 (510)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037155 740 PMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGD 819 (1403)
Q Consensus 740 p~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~~ 819 (1403)
..+ . . .
T Consensus 248 -----------~~~-----~----~----~-------------------------------------------------- 253 (510)
T PRK09700 248 -----------NRF-----N----A----M-------------------------------------------------- 253 (510)
T ss_pred -----------ccc-----c----c----c--------------------------------------------------
Confidence 000 0 0 0
Q ss_pred CCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccce
Q 037155 820 SNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ 899 (1403)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 899 (1403)
.. . .. . +. .+..+.++|++.. + ..
T Consensus 254 -----------~~--~---------~~---------~---~~-------~~~~l~~~~l~~~-------------~--~~ 277 (510)
T PRK09700 254 -----------KE--N---------VS---------N---LA-------HETVFEVRNVTSR-------------D--RK 277 (510)
T ss_pred -----------cc--c---------cc---------c---CC-------CCcEEEEeCcccc-------------C--CC
Confidence 00 0 00 0 00 0002445555421 1 12
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecC---CCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQT---DIHSPH 972 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~~~~~ 972 (1403)
+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999997653 47999999976532 1234569999998 457889
Q ss_pred CCHHHHHHHHHhhh---CC--CC-CcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 973 VTLYESLLYSAWLR---LS--SD-VDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 973 lTv~e~l~~~~~lr---~~--~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+||+|++.+....+ .. .. ......++.++++++.++|. +..++.++ .|||||||||+||++|+.+|+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCE
Confidence 99999998753211 00 01 11222334578999999996 66776644 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999999999999999999878999999999986 57889999999985 788887764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=622.93 Aligned_cols=202 Identities=23% Similarity=0.253 Sum_probs=170.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCC--CC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTD--IH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~ 969 (1403)
..+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++.. ..+++.++|++|++ .+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 4699999999999999999999999999999999998653 47999999986532 12356799999997 47
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
++.+||.|++.+....+. ....++..+.+.++++.+||. +..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 415 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred CCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999999987654321 112334456688999999996 4566653 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..++++|++++++ |.|||++|||++ .+.+.||++++|.+ |++++.|+.
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999765 899999999986 57789999999985 799999875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=608.93 Aligned_cols=453 Identities=21% Similarity=0.292 Sum_probs=340.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP---------------------DSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999987754332
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.|..... . + ....++.+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------------~-----------~--------------~~~~~~~~ 124 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKR-------------Q-----------A--------------SMQKMKQL 124 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccccc-------------h-----------H--------------HHHHHHHH
Confidence 246999999999999999999998852100 0 0 01124567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|
T Consensus 125 l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtH 198 (510)
T PRK15439 125 LAALGCQLDLDSSAGS-----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISH 198 (510)
T ss_pred HHHcCCCccccCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 8999999888888876 999999999999999999999999999999999999999999999876 4778777765
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 499 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~ 499 (1403)
+ ..++.+++|+|++|++|++++.|+++++... +.+
T Consensus 199 d-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~---------------~~~----------------------------- 233 (510)
T PRK15439 199 K-LPEIRQLADRISVMRDGTIALSGKTADLSTD---------------DII----------------------------- 233 (510)
T ss_pred C-HHHHHHhCCEEEEEECCEEEEecChHHcCHH---------------HHH-----------------------------
Confidence 4 4477889999999999999999987654210 000
Q ss_pred HHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhh
Q 037155 500 EGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFF 579 (1403)
Q Consensus 500 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~ 579 (1403)
+.+.
T Consensus 234 ~~~~---------------------------------------------------------------------------- 237 (510)
T PRK15439 234 QAIT---------------------------------------------------------------------------- 237 (510)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHH
Q 037155 580 RTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVL 659 (1403)
Q Consensus 580 ~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i 659 (1403)
..... ..... . .
T Consensus 238 ~~~~~-~~~~~------------------------------------~----~--------------------------- 249 (510)
T PRK15439 238 PAARE-KSLSA------------------------------------S----Q--------------------------- 249 (510)
T ss_pred Ccccc-ccccc------------------------------------c----c---------------------------
Confidence 00000 00000 0 0
Q ss_pred HhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHc
Q 037155 660 TYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVS 739 (1403)
Q Consensus 660 ~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~is 739 (1403)
.
T Consensus 250 ----------------------------------------------------------------------~--------- 250 (510)
T PRK15439 250 ----------------------------------------------------------------------K--------- 250 (510)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred HHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037155 740 PMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGD 819 (1403)
Q Consensus 740 p~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~~ 819 (1403)
... .+ +
T Consensus 251 ------------------~~~--------------------~~---------------------------------~--- 256 (510)
T PRK15439 251 ------------------LWL--------------------EL---------------------------------P--- 256 (510)
T ss_pred ------------------ccc--------------------cc---------------------------------c---
Confidence 000 00 0
Q ss_pred CCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccce
Q 037155 820 SNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ 899 (1403)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 899 (1403)
.. .... + .+ +.-+..+|++. .
T Consensus 257 -------------------------~~-------~~~~--~-~~------~~~l~~~~l~~------------------~ 277 (510)
T PRK15439 257 -------------------------GN-------RRQQ--A-AG------APVLTVEDLTG------------------E 277 (510)
T ss_pred -------------------------cc-------cccc--C-CC------CceEEEeCCCC------------------C
Confidence 00 0000 0 00 01144455431 1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCC---CCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTD---IHSPH 972 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~ 972 (1403)
+|+|||++|++|+++||+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 58999999999999999999999999999999997653 379999999865321 1235689999974 47788
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+|+.|++......+..........++.++++++.++|. +..++.+ ..|||||||||+||++|+.+|+|||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431111110011122335578999999997 6677664 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|..+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~ 488 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGA 488 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccc
Confidence 9999999999999999999888999999999987 5788999999998 47888887653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=660.34 Aligned_cols=210 Identities=23% Similarity=0.272 Sum_probs=176.0
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.|+|++++++. +...+|+||||+|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 5889999877631 224599999999999999999999999999999999998763 479999999986
Q ss_pred C---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCCC
Q 037155 952 K---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLPG 1021 (1403)
Q Consensus 952 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1021 (1403)
. ...+++.+|||||++.++.. |++|||... .+.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G 1443 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEGG 1443 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCCc
Confidence 5 35678899999999999875 999999532 1122 2347888888888653 466677544
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1022 VNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
..||||||||++|||||+++ |+||+||||||+||+++...|++.|++..+ ++|||+++|+++ ....||+|++|++
T Consensus 1444 -~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1444 -SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 46999999999999999996 899999999999999999999999998754 799999999975 5678999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1520 -G~VvE~Gt~ 1528 (1560)
T PTZ00243 1520 -GAVAEMGSP 1528 (1560)
T ss_pred -CEEEEECCH
Confidence 899999974
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-62 Score=608.34 Aligned_cols=200 Identities=24% Similarity=0.377 Sum_probs=166.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEc-Ccc---CCh------hhhcceeeEeecCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP---KKQ------ETFARVSGYCEQTD 967 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~~~~~~~gyv~Q~~ 967 (1403)
+.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++ |.+ ... ...++.+||++|++
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 4699999999999999999999999999999999997653 47999996 532 111 12345699999998
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-----cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-----LRDALVGLPGVNGLSTEQRKRLTIAVELVAN 1042 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~ 1042 (1403)
.+++.+||+|++.+...+. ...+..++.++++++.++|.+ ..++. +..|||||||||+||+||+.+
T Consensus 375 ~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred ccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcC
Confidence 8889999999998754321 122333456788999999975 34554 347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1043 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1043 P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+||||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|++ |++++.|+.
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999764 899999999986 57788999999985 788888864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-62 Score=610.35 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=168.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---h---hhcceeeEeecCC--CC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E---TFARVSGYCEQTD--IH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~~--~~ 969 (1403)
+.+|+|||++|++||++||+||||||||||+++|+|..+ .+|+|.++|.+... . .+++.+||++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 37999999976532 1 1345699999986 47
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
++.+||.|++.+....+.. .....+.++.++++++.++|. +..++.+ ..|||||||||+||++|+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886533211 122333445688999999997 4566553 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|+.
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999865 899999999986 57788999999985 789888874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-61 Score=654.19 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=175.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.|+|++++++. +.+.+|+|||++|+|||++||+|+||||||||+++|+|..+ .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5889999887631 22569999999999999999999999999999999999764 379999999987
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
.. ..+++.++||||++.+++. |++|||.... .. .++.++++++.++|.+ -.|+.+|..|
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 53 4578899999999999875 9999995321 11 2344788899888854 3466676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
.+||||||||++|||||+++|+||+||||||+||+.+...|++.|++..+ ++|||+++|+++ ....||+|++|++
T Consensus 1352 -~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~--ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1352 -YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVE--ALLECQQFLVIEG- 1426 (1490)
T ss_pred -CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 46999999999999999999999999999999999999999999999754 799999999975 4567999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 899998874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-62 Score=605.75 Aligned_cols=459 Identities=21% Similarity=0.288 Sum_probs=340.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++. +.+|+|.++|+++.....
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-------------------~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-------------------TWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-------------------CCCeEEEECCEECCCCCHHH
Confidence 46999999999999999999999999999999999987541 148999999988764332
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.++......+... ...+ ....++.+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~----------------~~~~--------------~~~~~~~~ 124 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRM----------------AYNA--------------MYLRAKNL 124 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhcccccccccc----------------CHHH--------------HHHHHHHH
Confidence 356999999999999999999998864321000000 0000 01134567
Q ss_pred HHHcCCcccc-cccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLGLDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lgL~~~~-dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.+||++.. ++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.
T Consensus 125 l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiit 198 (500)
T TIGR02633 125 LRELQLDADNVTRPVGD-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYIS 198 (500)
T ss_pred HHHcCCCCCcccCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 8999998764 456665 999999999999999999999999999999999999999999999875 477877766
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDF 498 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~ 498 (1403)
|+ ..++.+.+|+|++|++|++++.|+.+++.. .+.
T Consensus 199 Hd-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~ 233 (500)
T TIGR02633 199 HK-LNEVKAVCDTICVIRDGQHVATKDMSTMSE--------------------------------------------DDI 233 (500)
T ss_pred Cc-HHHHHHhCCEEEEEeCCeEeeecCcccCCH--------------------------------------------HHH
Confidence 54 457888999999999999987764321100 000
Q ss_pred HHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhh
Q 037155 499 VEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVF 578 (1403)
Q Consensus 499 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf 578 (1403)
.+. +
T Consensus 234 ~~~----------------------------------------------------------------------------~ 237 (500)
T TIGR02633 234 ITM----------------------------------------------------------------------------M 237 (500)
T ss_pred HHH----------------------------------------------------------------------------H
Confidence 000 0
Q ss_pred hcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHH
Q 037155 579 FRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIV 658 (1403)
Q Consensus 579 ~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 658 (1403)
.
T Consensus 238 ~------------------------------------------------------------------------------- 238 (500)
T TIGR02633 238 V------------------------------------------------------------------------------- 238 (500)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHH
Q 037155 659 LTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYV 738 (1403)
Q Consensus 659 i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~i 738 (1403)
+.. .+.
T Consensus 239 ------~~~------------------------------------------------------------~~~-------- 244 (500)
T TIGR02633 239 ------GRE------------------------------------------------------------ITS-------- 244 (500)
T ss_pred ------Ccc------------------------------------------------------------ccc--------
Confidence 000 000
Q ss_pred cHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 037155 739 SPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIG 818 (1403)
Q Consensus 739 sp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~ 818 (1403)
.+ . ..
T Consensus 245 -------------~~-----~----~~----------------------------------------------------- 249 (500)
T TIGR02633 245 -------------LY-----P----HE----------------------------------------------------- 249 (500)
T ss_pred -------------cc-----c----cc-----------------------------------------------------
Confidence 00 0 00
Q ss_pred CCCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccc
Q 037155 819 DSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRL 898 (1403)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 898 (1403)
. . +.. ..-+.++|+++... ..+++
T Consensus 250 --------------------------~--------~-----~~~-------~~~l~~~~l~~~~~----------~~~~~ 273 (500)
T TIGR02633 250 --------------------------P--------H-----EIG-------DVILEARNLTCWDV----------INPHR 273 (500)
T ss_pred --------------------------c--------c-----CCC-------CceEEEeCCccccc----------ccccc
Confidence 0 0 000 00134455443210 00124
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCC---CCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTD---IHSP 971 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~ 971 (1403)
.+|+|+||+|++||++||+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .+++
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 589999999999999999999999999999999997642 137999999987532 22356799999995 5788
Q ss_pred CCCHHHHHHHHHh--hhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 972 HVTLYESLLYSAW--LRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 972 ~lTv~e~l~~~~~--lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
.+||+|++.+... ............++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++|+|
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllL 427 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLIL 427 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999987532 111011122333456889999999964 456654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|.+ |+++..++.
T Consensus 428 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 428 DEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred cCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999888999999999986 57889999999985 788877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=603.28 Aligned_cols=451 Identities=22% Similarity=0.308 Sum_probs=339.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---------------------DAGSILIDGQEMRFASTTA 75 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCEEEECCEECCCCCHHH
Confidence 3699999999999999999999999999999999999854 5899999998775322
Q ss_pred -ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 -PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++||+|++.+++.+||+||+.++......+ ..+..+ ....++.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~-----------------~~~~~~--------------~~~~~~~~ 124 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG-----------------IVNRRL--------------LNYEAREQ 124 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccC-----------------CCCHHH--------------HHHHHHHH
Confidence 2457999999999999999999998853210000 000000 01134567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|
T Consensus 125 l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitH 198 (501)
T PRK11288 125 LEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSH 198 (501)
T ss_pred HHHcCCCCCcCCchhh-----CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 8999998777777765 999999999999999999999999999999999999999999999865 4778887766
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 499 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~~ 499 (1403)
++. ++.+++|+|++|++|+++..++..+. . .. ++..
T Consensus 199 d~~-~~~~~~d~i~~l~~G~i~~~~~~~~~-----------------------~----~~----------------~~~~ 234 (501)
T PRK11288 199 RME-EIFALCDAITVFKDGRYVATFDDMAQ-----------------------V----DR----------------DQLV 234 (501)
T ss_pred CHH-HHHHhCCEEEEEECCEEEeecCcccc-----------------------C----CH----------------HHHH
Confidence 554 77889999999999999855421100 0 00 0000
Q ss_pred HHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhhh
Q 037155 500 EGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFF 579 (1403)
Q Consensus 500 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~ 579 (1403)
+. +.
T Consensus 235 ~~----------------------------------------------------------------------------~~ 238 (501)
T PRK11288 235 QA----------------------------------------------------------------------------MV 238 (501)
T ss_pred HH----------------------------------------------------------------------------hc
Confidence 00 00
Q ss_pred cccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHHH
Q 037155 580 RTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVL 659 (1403)
Q Consensus 580 ~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i 659 (1403)
. ...
T Consensus 239 ~-----~~~----------------------------------------------------------------------- 242 (501)
T PRK11288 239 G-----REI----------------------------------------------------------------------- 242 (501)
T ss_pred C-----CCc-----------------------------------------------------------------------
Confidence 0 000
Q ss_pred HhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHc
Q 037155 660 TYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYVS 739 (1403)
Q Consensus 660 ~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~is 739 (1403)
..
T Consensus 243 ---------------------------------------------------------------------~~--------- 244 (501)
T PRK11288 243 ---------------------------------------------------------------------GD--------- 244 (501)
T ss_pred ---------------------------------------------------------------------cc---------
Confidence 00
Q ss_pred HHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037155 740 PMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGD 819 (1403)
Q Consensus 740 p~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~~ 819 (1403)
.+.
T Consensus 245 -----------------~~~------------------------------------------------------------ 247 (501)
T PRK11288 245 -----------------IYG------------------------------------------------------------ 247 (501)
T ss_pred -----------------ccc------------------------------------------------------------
Confidence 000
Q ss_pred CCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccce
Q 037155 820 SNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ 899 (1403)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 899 (1403)
..+. + . .+..+.++|+++ +.
T Consensus 248 -------------------------~~~~-----------~-~------~~~~l~~~~~~~-----------------~~ 267 (501)
T PRK11288 248 -------------------------YRPR-----------P-L------GEVRLRLDGLKG-----------------PG 267 (501)
T ss_pred -------------------------cccc-----------C-C------CCcEEEEecccc-----------------CC
Confidence 0000 0 0 001244555431 13
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCC---CCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTD---IHSPH 972 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ 972 (1403)
+++|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|++... ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 89999999999999999999999999999999997653 47999999986532 12345689999986 47889
Q ss_pred CCHHHHHHHHHhhhC-CCC--CcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 973 VTLYESLLYSAWLRL-SSD--VDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+|+.|++.+...... ... ......++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532211 001 01223335678999999994 56777654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
||||+|||+.++..+++.|+++++.|.|||++|||++ ++.+.||++++|.+ |++++.|..++
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999999888999999999986 57889999999985 78998887653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=593.74 Aligned_cols=449 Identities=19% Similarity=0.293 Sum_probs=337.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK---------------------DSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999988754321
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcc-cccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
++.++|++|++.+++.+||+||+.++.. ..+.. .+.+ + ....++.
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~-------------------~~~~--~-----------~~~~~~~ 117 (491)
T PRK10982 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF-------------------VDQD--K-----------MYRDTKA 117 (491)
T ss_pred HHhCCEEEEecccccccCCCHHHHhhcccccccccc-------------------cCHH--H-----------HHHHHHH
Confidence 3579999999988999999999987531 11100 0000 0 0113456
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.
T Consensus 118 ~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~t 191 (491)
T PRK10982 118 IFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYIS 191 (491)
T ss_pred HHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 78899998888887765 999999999999999999999999999999999999999999999875 477887776
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDF 498 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~ 498 (1403)
|+ ..++.+.+|+|++|++|+++..|+.+++.. . +.
T Consensus 192 H~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~----------------------------~----------------~~ 226 (491)
T PRK10982 192 HK-MEEIFQLCDEITILRDGQWIATQPLAGLTM----------------------------D----------------KI 226 (491)
T ss_pred cC-HHHHHHhCCEEEEEECCEEEeecChhhCCH----------------------------H----------------HH
Confidence 54 457888999999999999998876543100 0 00
Q ss_pred HHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhh
Q 037155 499 VEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVF 578 (1403)
Q Consensus 499 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf 578 (1403)
.+. +
T Consensus 227 ~~~----------------------------------------------------------------------------~ 230 (491)
T PRK10982 227 IAM----------------------------------------------------------------------------M 230 (491)
T ss_pred HHH----------------------------------------------------------------------------H
Confidence 000 0
Q ss_pred hcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHH
Q 037155 579 FRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIV 658 (1403)
Q Consensus 579 ~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 658 (1403)
.
T Consensus 231 ~------------------------------------------------------------------------------- 231 (491)
T PRK10982 231 V------------------------------------------------------------------------------- 231 (491)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHH
Q 037155 659 LTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYV 738 (1403)
Q Consensus 659 i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~i 738 (1403)
+-. ..
T Consensus 232 ------~~~------------------------------------------------------------~~--------- 236 (491)
T PRK10982 232 ------GRS------------------------------------------------------------LT--------- 236 (491)
T ss_pred ------CCC------------------------------------------------------------cc---------
Confidence 000 00
Q ss_pred cHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 037155 739 SPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIG 818 (1403)
Q Consensus 739 sp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~ 818 (1403)
..+ . .
T Consensus 237 ------------~~~-----~----~------------------------------------------------------ 241 (491)
T PRK10982 237 ------------QRF-----P----D------------------------------------------------------ 241 (491)
T ss_pred ------------ccc-----c----c------------------------------------------------------
Confidence 000 0 0
Q ss_pred CCCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccc
Q 037155 819 DSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRL 898 (1403)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 898 (1403)
. . . .+ .+..+.++|+++. .+
T Consensus 242 -----------~--------------~---------~---~~--------~~~~i~~~~l~~~---------------~~ 261 (491)
T PRK10982 242 -----------K--------------E---------N---KP--------GEVILEVRNLTSL---------------RQ 261 (491)
T ss_pred -----------c--------------c---------C---CC--------CCcEEEEeCcccc---------------cC
Confidence 0 0 0 00 0012455665432 12
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCC---CCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTD---IHSP 971 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~ 971 (1403)
.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|+. .+++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 489999999999999999999999999999999997653 479999999775421 2245589999985 3678
Q ss_pred CCCHHHHHHHHHh--hhCCCC-CcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 972 HVTLYESLLYSAW--LRLSSD-VDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 972 ~lTv~e~l~~~~~--lr~~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
++|+.++..+... ...... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8988887433211 100001 11223345678899999995 4556554 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|.+ |+++..++.
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 99999999999999999999999888999999999987 57789999999985 788866654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=584.09 Aligned_cols=201 Identities=21% Similarity=0.336 Sum_probs=157.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCCCCC--
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSP-- 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~-- 971 (1403)
+.+|+|+||++++||+++|+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+.+
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 4699999999999999999999999999999999996431 136999999976421 123467999999876543
Q ss_pred CCCHHHHHHHHHhh--hCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 972 HVTLYESLLYSAWL--RLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 972 ~lTv~e~l~~~~~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
..++++++.+.... ....... .+.++.++++++.++|.+ ..++.+ ..|||||||||+||++|+.+|++|+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllL 425 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLIL 425 (490)
T ss_pred CCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 35676666543211 1111111 223456889999999987 667654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHH-hcCeEEEEecCcEEEEe
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~i~ll~~gG~~~~~ 1107 (1403)
||||+|||+.++..+++.|++++++| .|||++||+++ ++.+ .+|++++|++ |++++.
T Consensus 426 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 426 DEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 99999999999999999999998776 47999999986 4555 5899999986 666554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=507.22 Aligned_cols=472 Identities=24% Similarity=0.339 Sum_probs=357.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
....++++|||.+++||.+||+|.||||||-..+.+.|+++.... ...+|+|.|+|.++-....
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~----------------~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA----------------AHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcc----------------cCccceeEEcChhhhcCCH
Confidence 456799999999999999999999999999999999999975322 1258999999998754432
Q ss_pred -------cceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccch
Q 037155 262 -------QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQET 332 (1403)
Q Consensus 262 -------~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~ 332 (1403)
-..|++++|+| .+.|-.|+..-|.-..+++.. ++++ ..
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~------------------------~A 131 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG---------LSRA------------------------AA 131 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc---------ccHH------------------------HH
Confidence 25799999998 677777888877655444311 1111 11
Q ss_pred hHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 333 SLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 333 ~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
+.++-.+|+..|+++-.... +.+.+.|||||||||.||.||+.+|++|+-||||++||.....+|.++|+++.++.|.
T Consensus 132 r~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gM 209 (534)
T COG4172 132 RARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGM 209 (534)
T ss_pred HHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCc
Confidence 22445678888988754433 2456779999999999999999999999999999999999999999999999998888
Q ss_pred EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCC
Q 037155 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRY 492 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~ 492 (1403)
.++++. |...-+-+.+|+|+||.+|+++++|+.+.+. ..|.+.-+...+.. +|
T Consensus 210 a~lfIT-HDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF--------~~PqHpYTr~Ll~a---------------eP--- 262 (534)
T COG4172 210 AILFIT-HDLGIVRKFADRVYVMQHGEIVETGTTETLF--------AAPQHPYTRKLLAA---------------EP--- 262 (534)
T ss_pred EEEEEe-ccHHHHHHhhhhEEEEeccEEeecCcHHHHh--------hCCCChHHHHHHhc---------------CC---
Confidence 887765 4555777899999999999999999987662 22221100000000 00
Q ss_pred CChhHHHHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 037155 493 IPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSL 572 (1403)
Q Consensus 493 ~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~al 572 (1403)
.. .
T Consensus 263 --------------------------~g----~----------------------------------------------- 265 (534)
T COG4172 263 --------------------------SG----D----------------------------------------------- 265 (534)
T ss_pred --------------------------CC----C-----------------------------------------------
Confidence 00 0
Q ss_pred HHHHhhhcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHH
Q 037155 573 ICMTVFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLD 652 (1403)
Q Consensus 573 i~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~ 652 (1403)
T Consensus 266 -------------------------------------------------------------------------------- 265 (534)
T COG4172 266 -------------------------------------------------------------------------------- 265 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhH
Q 037155 653 STIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFL 732 (1403)
Q Consensus 653 ~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~ 732 (1403)
T Consensus 266 -------------------------------------------------------------------------------- 265 (534)
T COG4172 266 -------------------------------------------------------------------------------- 265 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 037155 733 EWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALT 812 (1403)
Q Consensus 733 ~w~~~isp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~ 812 (1403)
+.+.
T Consensus 266 ----------------------------~~p~------------------------------------------------ 269 (534)
T COG4172 266 ----------------------------PPPL------------------------------------------------ 269 (534)
T ss_pred ----------------------------CCCC------------------------------------------------
Confidence 0000
Q ss_pred hcCCCCCCCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccc
Q 037155 813 YLNPIGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEG 892 (1403)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 892 (1403)
+ +..++-++-++++-..+.+..+-..
T Consensus 270 -----------------------------------------------~------~~~~~ll~~~~v~v~f~i~~g~~~r- 295 (534)
T COG4172 270 -----------------------------------------------P------EDAPVLLEVEDLRVWFPIKGGFLRR- 295 (534)
T ss_pred -----------------------------------------------C------CCCCceEEecceEEEEecCCccccc-
Confidence 0 0000111112221111111111000
Q ss_pred cccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecC
Q 037155 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQT 966 (1403)
Q Consensus 893 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~ 966 (1403)
..+...++++||++.++||.+||+|.||||||||=.+|.+...+ +|+|.++|.++.. ...++.+-.|+||
T Consensus 296 -~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQD 371 (534)
T COG4172 296 -TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQD 371 (534)
T ss_pred -cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeC
Confidence 11235699999999999999999999999999999999997753 5999999998753 2356789999999
Q ss_pred CC--CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 967 DI--HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 967 ~~--~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
+. +.|.+||.+-+.-+.....+ ..+..++++++.++|+.+||++- ++++ +.++|||||||++|||||+.+|
T Consensus 372 PygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 372 PYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred CCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCC
Confidence 84 67999999999888766543 45678899999999999999763 3443 5689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1044 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++++||||||.||-.-+.+|.++|+++.+ .|.+-++++||+. -+-.+||+++||+ +|++++.||.
T Consensus 446 ~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~GkiVE~G~~ 511 (534)
T COG4172 446 ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DGKIVEQGPT 511 (534)
T ss_pred cEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CCEEeeeCCH
Confidence 99999999999999999999999999964 4899999999986 4778999999998 5899999995
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-57 Score=565.02 Aligned_cols=200 Identities=20% Similarity=0.293 Sum_probs=160.7
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++|++++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 323 l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~--- 384 (552)
T TIGR03719 323 IEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET--- 384 (552)
T ss_pred EEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc---
Confidence 5677766543 235699999999999999999999999999999999997653 4799998542
Q ss_pred hhhhcceeeEeecCC-CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHH
Q 037155 953 QETFARVSGYCEQTD-IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1030 (1403)
..+||++|+. .+++.+||.|++.+...... .... ...+.++++.+++.+ ..+..+ ..||||||
T Consensus 385 -----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~ 449 (552)
T TIGR03719 385 -----VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGER 449 (552)
T ss_pred -----eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHH
Confidence 1489999986 47788999999988643211 1111 123457899999964 456554 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~g~ 1109 (1403)
|||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||+++ .+...||++++|++||++. +.|+
T Consensus 450 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 450 NRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 99999999999999999999999999999999999999983 48999999986 5778899999998666765 5554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=561.68 Aligned_cols=200 Identities=22% Similarity=0.307 Sum_probs=161.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 325 l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~--- 386 (556)
T PRK11819 325 IEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGET--- 386 (556)
T ss_pred EEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc---
Confidence 6677776543 235699999999999999999999999999999999997653 4799998542
Q ss_pred hhhhcceeeEeecCC-CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHH
Q 037155 953 QETFARVSGYCEQTD-IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1030 (1403)
..+||++|+. .+++.+||+|++.+....... ... ....+++++.+++.+ ..++.+ ..||||||
T Consensus 387 -----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~ 451 (556)
T PRK11819 387 -----VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGER 451 (556)
T ss_pred -----eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHH
Confidence 1489999986 677899999999876432211 111 122457899999964 456554 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~g~ 1109 (1403)
|||+||++|+.+|++|||||||+|||+.++..+++.|+++. | |||++||+++ .+.+.||++++|++||++. +.|+
T Consensus 452 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 452 NRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 99999999999999999999999999999999999999873 4 8999999986 5778899999998667765 4554
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=562.39 Aligned_cols=198 Identities=19% Similarity=0.274 Sum_probs=161.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.+ +++.+|+|+|++|++|++++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGF-------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEee-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 36777776543 234699999999999999999999999999999999997653 3799999873
Q ss_pred ChhhhcceeeEeecCCC--CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHH
Q 037155 952 KQETFARVSGYCEQTDI--HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1028 (1403)
+.+||++|++. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 456799999986421 11 1 1123478899999994 5666654 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YA 1107 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~ 1107 (1403)
||||++||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||++||+++ .+.+.||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999987 459999999986 57788999999986 5665 77
Q ss_pred cCC
Q 037155 1108 GPL 1110 (1403)
Q Consensus 1108 g~~ 1110 (1403)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 763
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=546.18 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=162.5
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.++ ..+||++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 58999999999999999999999999999999997653 37999875 1489999998888899999999
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.+..... . . ...++++++.++|.+..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.+
T Consensus 422 ~~~~~~~---~--~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDDL---G--S---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhhc---C--h---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 8753111 1 1 124678999999988777764 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcc---hhHHHHHHHhC
Q 037155 1060 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRE---SHKLIEYFEAV 1124 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~---~~~~~~~f~~~ 1124 (1403)
+..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..... ...+..|+..+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999764 899999999986 5778899999996 3 66666664322 12344566665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=540.42 Aligned_cols=196 Identities=22% Similarity=0.337 Sum_probs=157.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|+|+.|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 313 l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~--- 374 (638)
T PRK10636 313 LKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG--- 374 (638)
T ss_pred EEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC---
Confidence 5677776543 235699999999999999999999999999999999997653 4799998642
Q ss_pred hhhhcceeeEeecCC--CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 037155 953 QETFARVSGYCEQTD--IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQ 1029 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1029 (1403)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.. ..++.++ .|||||
T Consensus 375 -----~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGe 435 (638)
T PRK10636 375 -----IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGE 435 (638)
T ss_pred -----EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHH
Confidence 2589999974 34456677776531 1 11 112345788999999963 5566544 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 037155 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YAG 1108 (1403)
Q Consensus 1030 rqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~g 1108 (1403)
||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|.+ |+++ +.|
T Consensus 436 kqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g 510 (638)
T PRK10636 436 KARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDG 510 (638)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCC
Confidence 99999999999999999999999999999999999999987 349999999986 57788999999985 6775 778
Q ss_pred CC
Q 037155 1109 PL 1110 (1403)
Q Consensus 1109 ~~ 1110 (1403)
+.
T Consensus 511 ~~ 512 (638)
T PRK10636 511 DL 512 (638)
T ss_pred CH
Confidence 74
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=539.72 Aligned_cols=201 Identities=24% Similarity=0.319 Sum_probs=160.3
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|||++|++|+++||+|||||||||||++|+|...+ .+|+|.+ |.+.
T Consensus 320 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~- 382 (635)
T PRK11147 320 FEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL- 382 (635)
T ss_pred EEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc-
Confidence 5667766543 235699999999999999999999999999999999997653 4799988 4321
Q ss_pred hhhhcceeeEeecCC-CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHH
Q 037155 953 QETFARVSGYCEQTD-IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqr 1030 (1403)
.+||++|+. .+.+.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..||||||
T Consensus 383 ------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGek 446 (635)
T PRK11147 383 ------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGER 446 (635)
T ss_pred ------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHH
Confidence 489999975 5788999999998753211 011 1123467889999985 3456554 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-cCcEEEEecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-RGGRVIYAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-~gG~~~~~g~ 1109 (1403)
|||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||+++++. +|....|.|.
T Consensus 447 qRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 447 NRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCC
Confidence 9999999999999999999999999999999999999886 459999999976 5778899999997 5544556665
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 523 y 523 (635)
T PRK11147 523 Y 523 (635)
T ss_pred H
Confidence 3
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=490.28 Aligned_cols=451 Identities=24% Similarity=0.358 Sum_probs=345.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
+..++|+|||+.++|||+++|+|.||||||||+|+|+|.++| .+|+|.++|++..-..+
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p---------------------~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP---------------------DSGEILIDGKPVAFSSP 77 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC---------------------CCceEEECCEEccCCCH
Confidence 456899999999999999999999999999999999999865 58999999998765544
Q ss_pred c----ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 262 Q----RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 262 ~----~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
+ .-|+.|.|+..+.|+|||.|||.++....... +.. |..+ ......
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~----------------g~i---d~~~-----------m~~~A~ 127 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF----------------GLI---DRKA-----------MRRRAR 127 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCC----------------Ccc---CHHH-----------HHHHHH
Confidence 3 56999999999999999999997764332100 000 0000 122346
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+|+.+|+....++.|++ ||+||||-|.|||||..++++++|||||+.|+...+..+.+.++++.. .|.++|.+
T Consensus 128 ~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~I 201 (500)
T COG1129 128 ELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYI 201 (500)
T ss_pred HHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 688999997668999987 999999999999999999999999999999999999999999999975 57777665
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecCh-hhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChh
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPR-DNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVS 496 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~-~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~ 496 (1403)
.|.-.|++++||+|.||.+|+.+..++. .+.. .+
T Consensus 202 -SHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~--------------------------------------------~~ 236 (500)
T COG1129 202 -SHRLDEVFEIADRITVLRDGRVVGTRPTAAETS--------------------------------------------ED 236 (500)
T ss_pred -cCcHHHHHHhcCEEEEEeCCEEeeecccccCCC--------------------------------------------HH
Confidence 4577899999999999999999877652 2110 00
Q ss_pred HHHHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 037155 497 DFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMT 576 (1403)
Q Consensus 497 e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~ 576 (1403)
+..
T Consensus 237 ~lv----------------------------------------------------------------------------- 239 (500)
T COG1129 237 ELV----------------------------------------------------------------------------- 239 (500)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHH
Q 037155 577 VFFRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIW 656 (1403)
Q Consensus 577 vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~ 656 (1403)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHH
Q 037155 657 IVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGY 736 (1403)
Q Consensus 657 ~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~ 736 (1403)
-.|+|=
T Consensus 240 ----~~MvGr---------------------------------------------------------------------- 245 (500)
T COG1129 240 ----RLMVGR---------------------------------------------------------------------- 245 (500)
T ss_pred ----HHhhCc----------------------------------------------------------------------
Confidence 000000
Q ss_pred HHcHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 037155 737 YVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNP 816 (1403)
Q Consensus 737 ~isp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~ 816 (1403)
+. ...|..
T Consensus 246 ---------------~~-~~~~~~-------------------------------------------------------- 253 (500)
T COG1129 246 ---------------EL-EDLFPE-------------------------------------------------------- 253 (500)
T ss_pred ---------------ch-hhhccc--------------------------------------------------------
Confidence 00 000000
Q ss_pred CCCCCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccc
Q 037155 817 IGDSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGED 896 (1403)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 896 (1403)
. ..+ ...++.++.++++-
T Consensus 254 ---------------------------------------~-~~~------~~~~~~l~v~~l~~---------------- 271 (500)
T COG1129 254 ---------------------------------------P-PEE------GIGEPVLEVRNLSG---------------- 271 (500)
T ss_pred ---------------------------------------c-ccc------CCCCcEEEEecCCC----------------
Confidence 0 000 00011233444321
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCC---CC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTD---IH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~ 969 (1403)
...++||||++++||++||-|-=|||+|-|+++|.|... ...|+|.+||++... ...+.-++|||.|. -+
T Consensus 272 -~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl 348 (500)
T COG1129 272 -GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL 348 (500)
T ss_pred -CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcC
Confidence 115789999999999999999999999999999999543 237999999997643 23456799999764 57
Q ss_pred CCCCCHHHHHHHHHhhhCCC--CCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 970 SPHVTLYESLLYSAWLRLSS--DVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
++.++|.+|+.++...+... -.+....++.+++..+.+++... .+.. +..||||.+|||.|||.|..+|+||
T Consensus 349 ~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vL 423 (500)
T COG1129 349 VLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVL 423 (500)
T ss_pred cCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEE
Confidence 88999999998883323221 24445556678899999998643 2333 4479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
||||||.|+|.-++.+|.++|++++++|++||++|-++. |+...||||+||.+ |+++..=+
T Consensus 424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~ 484 (500)
T COG1129 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELD 484 (500)
T ss_pred EECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEec
Confidence 999999999999999999999999999999999999986 89999999999985 78776433
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=518.67 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=155.3
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 367777765431 124599999999999999999999999999999999997653 4699988652
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHH
Q 037155 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1030 (1403)
..+||++|+. .+.+++.++..+......+ ... .+.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 3455666664332111111 111 234678999999974 45554 347999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~g~ 1109 (1403)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. +.|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888775 349999999986 57788999999985 6776 6675
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=486.34 Aligned_cols=225 Identities=28% Similarity=0.309 Sum_probs=170.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
..+++|+|+|+.+.+|+.++|+|+|||||||||++|+|...| .+|+|...+
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~---------------------~~G~i~~~~-------- 64 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP---------------------DSGEVTRPK-------- 64 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC---------------------CCCeEeecC--------
Confidence 456799999999999999999999999999999999999865 589998764
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHH-HHhhccchhHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKA-VAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~il 340 (1403)
.-+++|++|++...+..||.+.+.-+.. ..+++..++........-......+++... ....+.+.+.+++.++
T Consensus 65 ~~~v~~l~Q~~~~~~~~tv~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 65 GLRVGYLSQEPPLDPEKTVLDYVIEGFG-----ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred CceEEEeCCCCCcCCCccHHHHHHhhhH-----HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 2379999999999999999999975432 222333222221111000000111111111 1223344556778899
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
..||++.. ++.+++ ||||||.||++|+||+.+|++|+|||||++||..+..++.+.|++. .| |+|+ +.|
T Consensus 140 ~gLg~~~~-~~~~~~-----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tvii-VSH 208 (530)
T COG0488 140 LGLGFPDE-DRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIV-VSH 208 (530)
T ss_pred hcCCCCcc-cCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEE-EeC
Confidence 99999888 888877 9999999999999999999999999999999999999999999853 34 5555 457
Q ss_pred CchhHHhhcCEEEEEcCCeEE-EecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIV-YHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv-~~G~~~~~~~ 451 (1403)
.....-+.|++|+-++.|++. |.|.++...+
T Consensus 209 DR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 209 DRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred CHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 777888899999999999875 8888876543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=446.03 Aligned_cols=457 Identities=22% Similarity=0.307 Sum_probs=350.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
...+++|||++|++||+.||+|.||||||||+++|.|.+.| .+|+|.++|+++.-..|+
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P---------------------~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP---------------------DSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC---------------------CcceEEECCEEeccCCHH
Confidence 56799999999999999999999999999999999999865 589999999987655543
Q ss_pred ----ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 263 ----RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 263 ----~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
--||+|.||..+++++||.|||..+..-...+ + . +.. +...+++.
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~-~-----------------~--~~~-----------~~~~~i~~ 123 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG-L-----------------I--DRR-----------QARARIKE 123 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCcccccc-c-----------------c--CHH-----------HHHHHHHH
Confidence 56999999999999999999998875321000 0 0 000 01224567
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+.+.+||+-..|..|++ ||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++++ .|+|+|++.
T Consensus 124 l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~IT 197 (501)
T COG3845 124 LSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFIT 197 (501)
T ss_pred HHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 88999999999999988 999999999999999999999999999999999999999999999986 588888765
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDF 498 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~e~ 498 (1403)
|--.|+.+.+|++.||..|+++-.-++ . +. .+.+++
T Consensus 198 -HKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~--------------~~---------------------------~t~~el 233 (501)
T COG3845 198 -HKLKEVMAIADRVTVLRRGKVVGTVDP--V--------------AE---------------------------TTEEEL 233 (501)
T ss_pred -ccHHHHHHhhCeeEEEeCCeEEeeecC--C--------------CC---------------------------CCHHHH
Confidence 556799999999999999998633210 0 00 000000
Q ss_pred HHHHHhCcchhhHHhhhcCCCCCCCCCccccccCCcCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhh
Q 037155 499 VEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVF 578 (1403)
Q Consensus 499 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf 578 (1403)
++.
T Consensus 234 a~l----------------------------------------------------------------------------- 236 (501)
T COG3845 234 AEL----------------------------------------------------------------------------- 236 (501)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hcccCCCCCccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccchhHHHHHHHHHHhhHHHHHHHHHHH
Q 037155 579 FRTEMSVGDLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIV 658 (1403)
Q Consensus 579 ~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 658 (1403)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHH
Q 037155 659 LTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPFLEWGYYV 738 (1403)
Q Consensus 659 i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~~l~r~iaa~~~~~~va~~~~~~~l~~~~l~~Gf~i~~~~ip~~~~w~~~i 738 (1403)
|+|=.
T Consensus 237 ----MvG~~----------------------------------------------------------------------- 241 (501)
T COG3845 237 ----MVGRE----------------------------------------------------------------------- 241 (501)
T ss_pred ----hcCCc-----------------------------------------------------------------------
Confidence 00000
Q ss_pred cHHHHHHHHHHHHhhcCCcCccCCCCCCccccchhhhhhhhcCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 037155 739 SPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIG 818 (1403)
Q Consensus 739 sp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~l~~l~l~~~~~~~ 818 (1403)
+.
T Consensus 242 -------------------------------------v~----------------------------------------- 243 (501)
T COG3845 242 -------------------------------------VV----------------------------------------- 243 (501)
T ss_pred -------------------------------------cc-----------------------------------------
Confidence 00
Q ss_pred CCCceeeeccccccccCCCccccccccccccccccccccCCCcCCccccccCcEEEEeeceeeeeccccccccccccccc
Q 037155 819 DSNSTVVEEDGDKKRASGNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRL 898 (1403)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 898 (1403)
. .. .... ...| +.-++.++++-... ...
T Consensus 244 ------~-------------------~~-------~~~~--~~pg------~~vL~V~~L~v~~~------------~~~ 271 (501)
T COG3845 244 ------L-------------------RV-------VKPP--STPG------EVVLEVEDLSVKDR------------RGV 271 (501)
T ss_pred ------c-------------------cc-------ccCC--CCCC------CeEEEEeeeEeecC------------CCC
Confidence 0 00 0000 0000 12344555542211 124
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC----Chh-hhcceeeEeecCC---CCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----KQE-TFARVSGYCEQTD---IHS 970 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~~-~~~~~~gyv~Q~~---~~~ 970 (1403)
..+++|||++++||++||.|..|-|.+.|+.+|+|..+. ..|+|.++|.+. +.. ..+..+||||.|. .+.
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv 349 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccc
Confidence 579999999999999999999999999999999997643 249999999985 222 2335689999986 356
Q ss_pred CCCCHHHHHHHHHhhhC----CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 971 PHVTLYESLLYSAWLRL----SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
+.+|+.||+.+...-+. ..-.+.....+...++++.++.....-. ...+.||||++||+-+||+|.++|++|
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lL 425 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLL 425 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEE
Confidence 89999999987654221 1124456667788999999998732211 124579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+..+||.|||..+.+.|.+.|.+.++.|++|++++-+++ ++++.+|+|.+|.+ |+++...+..
T Consensus 426 I~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred EEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 999999999999999999999999999999999999998 89999999999985 8888777654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=375.46 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=183.0
Q ss_pred ccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC----hhhhcceeeEeecCCCC
Q 037155 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK----QETFARVSGYCEQTDIH 969 (1403)
Q Consensus 894 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~~~~ 969 (1403)
.++..++|+|||++|++||+++|+|||||||||||++|.|...+ .+|+|.++|.... -...|+.+|+|+|+..+
T Consensus 11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 45678899999999999999999999999999999999998763 4799999996542 24567889999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
||++||.||+.++-..- ...++++.++...++|+.+||.+.+|.+. .+|||||||||+|||||+.+|+++++|
T Consensus 89 FPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 89 FPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred cccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 99999999999875432 24556777788899999999999999874 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+...++.+.+++++++|.|.||+||++.. ..+.+||++.|+ +|+++..|+.
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p 220 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPP 220 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCH
Confidence 9999999999999999999999999999999999874 678899999998 5888888875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.31 Aligned_cols=221 Identities=27% Similarity=0.429 Sum_probs=185.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC----
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE---- 258 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~---- 258 (1403)
+..+|+|||++|++||+++|+|||||||||||++|.|+..+ .+|+|.++|+++..
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~---------------------~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP---------------------DSGSITVDGEDVGDKKDI 72 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC---------------------CCceEEECCEeccchhhH
Confidence 56799999999999999999999999999999999998754 58999999976532
Q ss_pred CCccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 259 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 259 ~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
...|+.+|+|+|+..+||++||.||+..+...- ...++. +.+.....
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v---------~~~~k~------------------------eA~~~A~~ 119 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV---------KKLSKA------------------------EAREKALE 119 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHH---------cCCCHH------------------------HHHHHHHH
Confidence 124688999999999999999999999864210 011111 11223456
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+|+.+||.+.+|...+. |||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .|.|.+|.+
T Consensus 120 lL~~VGL~~ka~~yP~q-----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVT 193 (240)
T COG1126 120 LLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVT 193 (240)
T ss_pred HHHHcCchhhhhhCccc-----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 89999999999988865 999999999999999999999999999999999999999999999997 488999887
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHh
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQE 472 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~e 472 (1403)
|.- ....+.+|||+.|++|+++..|+++++ |..|.+.-..+|+..
T Consensus 194 HEM-~FAr~VadrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 194 HEM-GFAREVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred chh-HHHHHhhheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 654 467789999999999999999999876 456766666777654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=386.52 Aligned_cols=201 Identities=18% Similarity=0.233 Sum_probs=151.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+.+.++ ++..++++++|-|.+++.+|++|||||||||||+++.|...+ ..|.+.-.-+
T Consensus 389 vi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H-- 452 (614)
T KOG0927|consen 389 VIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH-- 452 (614)
T ss_pred eEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc--
Confidence 456777765432 123689999999999999999999999999999999997653 3566543222
Q ss_pred ChhhhcceeeEeecC--CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 037155 952 KQETFARVSGYCEQT--DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~--~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1029 (1403)
..+++..|. +.+.-+.++.|+++=.. ..+.+.+.+..++..+||+...+.. ..+.||+||
T Consensus 453 ------~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 453 ------NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred ------ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 123333332 22223456666554211 1123455678899999998544432 245899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1030 rqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|+||..|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||.. -+-+.++++.+..+++...+.|.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999999886 468999999986 47788999999999888899887
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 591 i 591 (614)
T KOG0927|consen 591 I 591 (614)
T ss_pred H
Confidence 4
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=388.59 Aligned_cols=205 Identities=30% Similarity=0.458 Sum_probs=183.3
Q ss_pred ccc-cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCC
Q 037155 894 GED-RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 894 ~~~-~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~ 970 (1403)
.++ ++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.++
T Consensus 13 ~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 345 57899999999999999999999999999999999998764 47999999987654 45678899999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|.+||+|++.|.+.++.... ...+++++++++.++|.+..++.+ ++||+||||||+||+||+++|++|||||
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 91 PELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred ccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999999999987543 344567999999999998555544 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+||||.++..+++.|++++++| +||+++||+++ ++...||++++|++ |++++.|+.
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 999999999999999999999887 89999999997 68888999999985 899999975
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=357.48 Aligned_cols=221 Identities=25% Similarity=0.382 Sum_probs=191.9
Q ss_pred ccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCC
Q 037155 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTD 967 (1403)
Q Consensus 894 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~ 967 (1403)
+.+.+.||+|||++|++||+++||||||+||||||++|.|...+ .+|+|.++|.++.+ ...++++|+++|.-
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 34678899999999999999999999999999999999998764 47999999988643 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
.+|..+||+||+.|..+ ...+.+++..++.+..-|+.+||... .+.. +.+||||+|||++|||||+.||+||
T Consensus 95 ALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 95 ALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred ccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHHhcCCCEE
Confidence 99999999999998753 34456777788888899999999887 6655 4589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc----chhHHHHHH
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR----ESHKLIEYF 1121 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~----~~~~~~~~f 1121 (1403)
|+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..||++++|.+ |+++..|+..+ +..-+.+||
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHHHHHHh
Confidence 999999999999999999999999876 899999999987 68999999999985 89999999753 223467788
Q ss_pred HhCC
Q 037155 1122 EAVP 1125 (1403)
Q Consensus 1122 ~~~~ 1125 (1403)
....
T Consensus 246 ~G~~ 249 (263)
T COG1127 246 NGIR 249 (263)
T ss_pred cCCC
Confidence 7654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=364.71 Aligned_cols=193 Identities=25% Similarity=0.387 Sum_probs=172.7
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+...+|+|||++|.+||+++|+|||||||||||++|+|..++ .+|+|.++|.+.. .....+|||+|++.++|.+||
T Consensus 14 ~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccC--CCCCCEEEEeccCcccchhhH
Confidence 346799999999999999999999999999999999998764 4799999999873 234668999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.++...+. .+.+++.+.+++.++.+||.+..|.. +++|||||||||+|||||+.+|+||+||||+++|
T Consensus 90 ~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 90 LDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred Hhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 999999987654 34556667899999999999999987 4589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1056 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
|+.++..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 162 DalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 162 DALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999864 5899999999987 677889999999863
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=368.24 Aligned_cols=218 Identities=28% Similarity=0.424 Sum_probs=183.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.+ +..++|+|||+++++|++++|+||||||||||+++|.|..++ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y-------------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSY-------------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEE-------------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 46677776654 322599999999999999999999999999999999997653 479999999886
Q ss_pred ChhhhcceeeEeecCCCC--CCCCCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 952 KQETFARVSGYCEQTDIH--SPHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~--~~~lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
.+..-+..+|||||...+ ...+||+|-+..+..-+.. .....++.++.++++|+.+|+.+++|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 654445689999995522 2358999999887443321 111223346779999999999999999887 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|+|||.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+|||+++||++ .+.+.||+++.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 5889999999996 5899999
Q ss_pred CCCc
Q 037155 1109 PLGR 1112 (1403)
Q Consensus 1109 ~~~~ 1112 (1403)
|+.+
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 9764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=370.65 Aligned_cols=203 Identities=26% Similarity=0.351 Sum_probs=183.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 970 (1403)
...+|+|||++|++||++||+|.||||||||++++.+...+ .+|+|.++|.++.. ...++.+|+++|...++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 36799999999999999999999999999999999997664 48999999976432 34678899999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
...||+||+.|...+.. .++++++++|.++++.+||.+.++.+ +.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999987764 56788889999999999999998887 44899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+|||++...|.++|+++.++ |.||+++||+++ -+.+.|||+.+|++ |++++.|++.
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccHH
Confidence 99999999999999999999754 999999999987 47889999999985 8999999964
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=370.16 Aligned_cols=219 Identities=29% Similarity=0.440 Sum_probs=185.9
Q ss_pred ccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC---hhhhcceeeEeecCCCCC
Q 037155 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK---QETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 894 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~ 970 (1403)
+|+++.+|+|+||++++|++++|+|||||||||||++|+|..++ .+|+|.++|+++. .+.+++.+|||||.....
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~ 88 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCC
Confidence 34567899999999999999999999999999999999997663 3799999998864 356788999999999888
Q ss_pred CCCCHHHHHHHHHhhhCCC-CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 971 PHVTLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
..+||+|.+.++..-.... ....++..+.++++|+.+++.+++++.+. .||||||||+.|||||+++|+||+||
T Consensus 89 ~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 89 FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 8999999999885432211 11233444578999999999999998754 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc--chhHHHHHH
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR--ESHKLIEYF 1121 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~--~~~~~~~~f 1121 (1403)
||||+||...+.++++++++++ ++|+|||+++||++. ...+||++++|+ +|+++..|++.+ ..+.+.+.|
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk-~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLK-DGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEE-CCeEEeecCcchhcCHHHHHHHh
Confidence 9999999999999999999998 459999999999984 788999999998 489999998643 233455555
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=365.97 Aligned_cols=225 Identities=28% Similarity=0.369 Sum_probs=194.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV- 260 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~- 260 (1403)
....+|+|||+.|++|++.+|+|+||||||||++++.++..| .+|+|.++|.++....
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P---------------------tsG~v~v~G~di~~l~~ 75 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP---------------------TSGSVFVDGQDLTALSE 75 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC---------------------CCceEEEcCEecccCCh
Confidence 356799999999999999999999999999999999998755 6899999998776543
Q ss_pred -----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 -----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 -----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.|+.||+++|+..++...||.||+.|..+..+.. +. +.+.+
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~----------k~------------------------ei~~R 121 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP----------KA------------------------EIKQR 121 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCC----------HH------------------------HHHHH
Confidence 2578999999999999999999999987665521 11 12335
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+.++++.+||++.+|....+ |||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.+..|.|++
T Consensus 122 V~elLelVgL~dk~~~yP~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv 196 (339)
T COG1135 122 VAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196 (339)
T ss_pred HHHHHHHcCChhhhccCchh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE
Confidence 67889999999999988766 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcC
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTS 475 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s 475 (1403)
+..|+.. -+-+.||+|.+|++|+++++|+..++ |..|.+.-...|+.+...
T Consensus 197 lITHEm~-Vvk~ic~rVavm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 197 LITHEME-VVKRICDRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EEechHH-HHHHHhhhheEeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 8887654 67789999999999999999999887 456776666677766543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=354.60 Aligned_cols=205 Identities=26% Similarity=0.381 Sum_probs=183.0
Q ss_pred ccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCC
Q 037155 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 894 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~ 970 (1403)
.+.++.+++|+|++|++||+++++|||||||||+|++|.+..++ .+|+|++||.++.. ...||.+|||-|.-.+|
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 34567899999999999999999999999999999999998774 48999999998654 56789999999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP--LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
|++||.||+.+--.+. ..++++.+++++|+|+.+||.+ +++++ +++|||||+|||.+||||+++|+||+|
T Consensus 88 Ph~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 88 PHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred CCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEee
Confidence 9999999998876554 4567788888999999999975 67776 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+++|||.++..+++.++++.++ |+|||++|||.+ |.+++.||+.+|+ +|+++..+++
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P 220 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTP 220 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCH
Confidence 9999999999999999999999755 999999999987 7889999999998 4787777764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=351.86 Aligned_cols=208 Identities=28% Similarity=0.382 Sum_probs=179.5
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~ 969 (1403)
+++++|+|||+.|++||++||+|||||||||||++|.|..++ .+|+|.++|..+.. ..+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 568899999999999999999999999999999999997663 47999999976422 3467889999999999
Q ss_pred CCCCCHHHHHHHHHhhhC-----CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 037155 970 SPHVTLYESLLYSAWLRL-----SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS 1044 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ 1044 (1403)
.+.++|.+|++.+..-+. -.+...++.+..+-++|+.+|+.+.+....+ .|||||+|||+|||||+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCC
Confidence 999999999987643221 1233334555667889999999988877654 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1045 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1045 illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
||+.|||+++|||.+++.||+.|+++++ .|.|||++.||.+. ..++|||++-|+ .|+++|+||..+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~-~G~ivfDg~~~e 234 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK-AGRIVFDGPASE 234 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec-CCcEEEeCChhh
Confidence 9999999999999999999999999975 58999999999874 678999999998 589999999754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=356.32 Aligned_cols=193 Identities=28% Similarity=0.454 Sum_probs=167.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhh-cceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETF-ARVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~Q~~~~~ 970 (1403)
..+|++||++|++||++||||||||||||||++|.|...+ .+|.+.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 6799999999999999999999999999999999997664 47999999976532 223 35699999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD-ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
|++||.||+.+...+.... ...+++.++++++.+||.+..+ .. +.+|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999877655322 2245566889999999987665 44 4589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|||.+||+.+...|++++++++++ |+|||++|||+ ++...|||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999865 99999999997 57889999999986 55
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=397.21 Aligned_cols=214 Identities=24% Similarity=0.445 Sum_probs=183.9
Q ss_pred CCCcccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC
Q 037155 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN 257 (1403)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~ 257 (1403)
++.+++.+||+|+|++|+|||.||||||||+||||+.++|..+++| .+|+|++||+++.
T Consensus 475 YP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P---------------------tsG~IllDG~~i~ 533 (716)
T KOG0058|consen 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP---------------------TSGRILLDGVPIS 533 (716)
T ss_pred cCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC---------------------CCCeEEECCeehh
Confidence 3445678899999999999999999999999999999999999865 6899999999998
Q ss_pred CCCc---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 258 EFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 258 ~~~~---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
+.++ ++.||+|.|+|.+|.. ||+|||.|+.. ..+.++++.|+..++.
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANa---- 583 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-------------------------NATDEEIEAAAKMANA---- 583 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCh----
Confidence 8775 5899999999999976 99999999732 2233445555555442
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 335 ~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.|.|. ++++++||.||+ .+..||||||||++|||||+++|+||+|||.||+||+.+...+.++|.+..+ ++|+
T Consensus 584 -h~FI~---~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTV 656 (716)
T KOG0058|consen 584 -HEFIT---NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTV 656 (716)
T ss_pred -HHHHH---hCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeE
Confidence 34444 499999999995 5566999999999999999999999999999999999999999999998875 5888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+++-|. -++.+.+|+|+++++|++++.|+++|+++
T Consensus 657 lvIAHR--LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 657 LVIAHR--LSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEehh--hhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 887654 36899999999999999999999999874
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=398.33 Aligned_cols=216 Identities=22% Similarity=0.369 Sum_probs=183.8
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..+..+|++...+ .+++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 3566777664431 1236799999999999999999999999999999999998653 47999999987
Q ss_pred CCh--hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 951 KKQ--ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 951 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.+||.+..|+.++ .||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 643 2345679999999999999999999999876653 2233445668999999999988887654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|||||+||+||+.+|+||+|||||+|||+.+++.++++|++++ +|+|||++||+++ ++...+||+++|++ |++++.|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57788999999985 8999988
Q ss_pred CC
Q 037155 1109 PL 1110 (1403)
Q Consensus 1109 ~~ 1110 (1403)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=361.01 Aligned_cols=206 Identities=30% Similarity=0.472 Sum_probs=185.4
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc---cCCh-hhhcceeeEeecCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKKQ-ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~ 971 (1403)
+...+++|||+.|+.||++||+|||||||||||++|||..++ ..|.|.+||. +.++ ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456789999999999999999999999999999999998774 4799999998 4443 334588999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+|||.+|+.|+...+ ....+..+.+.+++++|+.++|+++.+++ +.+|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998777 33455677788899999999999999987 458999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+++||+.-+..+.+.|+++.+. |.|+|++|||+. +..+.+||+++|++ |++...||..
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999866 999999999987 79999999999985 8999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=377.56 Aligned_cols=217 Identities=30% Similarity=0.423 Sum_probs=191.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc-ce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ-RT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~-~~ 264 (1403)
+|+|+|+.|++||+++|+|||||||||||++|||+.++ .+|+|.++|.++++..|+ |.
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~---------------------~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP---------------------TSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEECCCCChhHCC
Confidence 89999999999999999999999999999999999865 589999999999998774 88
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
+|+|+|+..++|+|||+|||.|+.+.++.. ..+ .+.+++.+.+.|+
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~--------------------k~e--------------i~~rV~eva~~L~ 122 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVP--------------------KAE--------------IDKRVKEVAKLLG 122 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCc--------------------hHH--------------HHHHHHHHHHHcC
Confidence 999999999999999999999998776532 111 2235677889999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++..|..... |||||||||++||||+.+|++++||||+|.||+..+.++...++++.+..+.|+|..+| ...|
T Consensus 123 l~~lL~r~P~~-----LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH-Dq~E 196 (338)
T COG3839 123 LEHLLNRKPLQ-----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH-DQVE 196 (338)
T ss_pred ChhHHhcCccc-----CChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC-CHHH
Confidence 99999988765 99999999999999999999999999999999999999999999998878888777655 5559
Q ss_pred HHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHH
Q 037155 425 TYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQ 471 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ 471 (1403)
...++|+|++|++|+|...|++.++ |..|...-+|.|+-
T Consensus 197 Amtladri~Vm~~G~i~Q~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 197 AMTLADRIVVMNDGRIQQVGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred HHhhCCEEEEEeCCeeeecCChHHH--------hhCccchhhhhhcC
Confidence 9999999999999999999999998 35577666676653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=340.55 Aligned_cols=202 Identities=29% Similarity=0.401 Sum_probs=183.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC--hhhhcceeeEeecCCCCCCCCCH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK--QETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|.++|.+.. +...++.+|.++....++..||+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 3499999999999999999999999999999999998764 4799999998753 35578899999988888999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+|||.|.+.+.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 999999998864 4456667789999999999999999887 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|..+...+.+.++++.++|++||++||.++ ++..+||++++|++ |.+++.|...
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999989999999999986 78889999999986 7999999853
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=377.00 Aligned_cols=212 Identities=33% Similarity=0.489 Sum_probs=184.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--C
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--V 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--~ 260 (1403)
++.+|+|||+.+++|++++|+|||||||||||++|+|.+.| .+|+|.++|++.... .
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---------------------~~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---------------------TSGEILVLGYDVVKEPAK 75 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---------------------CceEEEEcCEeCccCHHH
Confidence 46899999999999999999999999999999999999865 589999999887652 3
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.+||++|++.+++.+||+|||.|.+++++.... ....+++.++
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l 121 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELL 121 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHH
Confidence 457899999999999999999999999888764210 0112467889
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||++..++.++ +||+||||||+||.||+++|++|||||||+|||+.++.++++.|+++++..++|++++.|+
T Consensus 122 ~~~~L~~~~~~~~~-----~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~ 196 (293)
T COG1131 122 ELFGLEDKANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI 196 (293)
T ss_pred HHcCCchhhCcchh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Confidence 99999986666665 4999999999999999999999999999999999999999999999998655788888766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQ 455 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~ 455 (1403)
+. ++..+||+|++|++|++++.|+.+++...+..
T Consensus 197 l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 197 LE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred HH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 55 88899999999999999999999998766543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=374.01 Aligned_cols=205 Identities=28% Similarity=0.410 Sum_probs=184.6
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++...+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.|+|.+.+. ...+|.+|+|+|+..++|+|
T Consensus 13 yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhm 90 (338)
T COG3839 13 FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90 (338)
T ss_pred cCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhHCCEEEEeCCccccCCC
Confidence 3333399999999999999999999999999999999998763 47999999998766 44568899999999999999
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+||+.|+.+++. .++++.+++|+++.+.++|+++.|++ +++|||||||||+|||||+++|++++||||.|
T Consensus 91 tV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 91 TVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred cHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 99999999988764 45677788899999999999999987 45899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+||+..+..+...|+++.++ |.|+|.+|||.. |...++||+.+|+ +|++...|++.
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~p~ 219 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGTPL 219 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCChH
Confidence 99999999999999998754 899999999974 7889999999998 58999998764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=376.92 Aligned_cols=223 Identities=30% Similarity=0.435 Sum_probs=196.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+..+|+|+|+.|++||+++|+|||||||||||++|||+..| .+|+|.++|++++...+
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p---------------------~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP---------------------SSGEILLDGEDITDVPPE 75 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEECCCCChh
Confidence 56799999999999999999999999999999999999865 58999999999998776
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+|.+++|+|+..+||+|||+||+.|+.+.+... ++.+ ...+++++++
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~-------------------~~~~--------------i~~rv~e~L~ 122 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL-------------------KKAE--------------IKARVEEALE 122 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCC-------------------CHHH--------------HHHHHHHHHH
Confidence 588999999999999999999999997643211 1111 1235678899
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.++|++.++..+.+ |||||||||++||||+.+|++||||||.|+||..-+.++...|+++.+..|.|.|..+| +
T Consensus 123 lV~L~~~~~R~p~q-----LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH-D 196 (352)
T COG3842 123 LVGLEGFADRKPHQ-----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH-D 196 (352)
T ss_pred HcCchhhhhhChhh-----hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC-C
Confidence 99999998888765 99999999999999999999999999999999999999999999999988888888765 5
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhh
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEV 473 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev 473 (1403)
..|.+.++|+|++|++|+|...|+++++ |..|...-+|+|+-+.
T Consensus 197 qeEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 197 QEEALAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred HHHHhhhccceEEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 5699999999999999999999999998 5668777788887653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=345.19 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=183.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
++.+++|+|++|++||+++++|||||||||+||+|.+++.| .+|+|.+||+++.+.+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep---------------------t~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP---------------------TSGEILIDGEDISDLDPV 71 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC---------------------CCceEEECCeecccCCHH
Confidence 56799999999999999999999999999999999999865 6899999999987755
Q ss_pred -ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 -PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.||.+|||-|+-.+||++||.|||.+-..+.+... ++...+++++
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~EL 117 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK----------------------------------ERIKKRADEL 117 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHH
Confidence 37899999999999999999999998665544211 1123357889
Q ss_pred HHHcCCcc--cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 340 LKLLGLDI--CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 340 l~~lgL~~--~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
|+.+||+. ..+... +.|||||+|||.+||||+.+|+|++||||+++|||.++.++.+.++++.+..++|+|+.
T Consensus 118 l~lvgL~p~~~~~RyP-----~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV 192 (309)
T COG1125 118 LDLVGLDPSEYADRYP-----HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192 (309)
T ss_pred HHHhCCCHHHHhhcCc-----hhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE
Confidence 99999975 566555 45999999999999999999999999999999999999999999999999899998887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ |.-.|.+.++|+|++|++|+++..+++++++.
T Consensus 193 T-HDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 193 T-HDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred e-cCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 5 56679999999999999999999999999863
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=360.41 Aligned_cols=211 Identities=29% Similarity=0.466 Sum_probs=181.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+++||+|+|+++++|++++|+||||||||||||+|+|.++| .+|+|.++|+++.+...
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---------------------~~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP---------------------KSGEVLLDGKDIASLSPK 72 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC---------------------CCCEEEECCCchhhcCHH
Confidence 46799999999999999999999999999999999999865 48999999999877654
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.|.+|||||.......+||+|-+.++..-+.. .+ + .+. .+....++..
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~--~~-------------~-~~~--------------~~D~~~v~~a 122 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG--LF-------------G-RPS--------------KEDEEIVEEA 122 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc--cc-------------c-CCC--------------HhHHHHHHHH
Confidence 48899999999888899999999886332100 00 0 000 0111245678
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
|+.+|+.+.++..+.+ |||||||||.|||||+.+|++|+||||||+||...+.++++.++++++..|.|+|+++|
T Consensus 123 L~~~~~~~la~r~~~~-----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 123 LELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred HHHhCcHHHhcCcccc-----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999999876 99999999999999999999999999999999999999999999999888899998876
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.+. ....+||++++|++|+++.+|++++++
T Consensus 198 DlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 198 DLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 654 788999999999999999999998875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=328.19 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=174.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+++|+||||+|++||++-|+|||||||||||++|.+...+ ..|+|.++|+++.. .-.+|.+|+|+||..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 6699999999999999999999999999999999997653 47999999998643 225788999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+.||+||+.|...... .+..+.+++|.++|+.+||.+.++.. +..|||||+|||+||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999877653 34566778899999999999988876 458999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|.+|||..+..||+++.++...|.|||+.|||.+. +...-.+++.|.+ |+++.+..
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEeccc
Confidence 99999999999999999999999999999998642 3444457777874 78876643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=353.11 Aligned_cols=223 Identities=29% Similarity=0.457 Sum_probs=187.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCc---cCCC
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH---ELNE 258 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~---~~~~ 258 (1403)
....+++|||+.|+.||++|++|||||||||||++|||+..| .+|.|.+||. +.+.
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p---------------------~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP---------------------DAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC---------------------CCceEEECCEeccchhc
Confidence 345689999999999999999999999999999999999865 5899999999 5555
Q ss_pred CC-ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 259 FV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 259 ~~-~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.. ..|.||||+|+..+|++|||.+||.|+.+++... .+..+ .+.+++
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~------------------p~~~~--------------~r~rv~ 119 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER------------------PSEAE--------------IRARVE 119 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhcccccccC------------------CChhh--------------HHHHHH
Confidence 33 3489999999999999999999999998765110 01111 123467
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
++|+.+.|++.++...-+ |||||||||++||||+..|++|+||||+++||...+.++.+.|+++.+..+.|++++
T Consensus 120 elL~lvqL~~la~ryP~Q-----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfV 194 (345)
T COG1118 120 ELLRLVQLEGLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFV 194 (345)
T ss_pred HHHHHhcccchhhcCchh-----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEE
Confidence 789999999988877754 999999999999999999999999999999999999999999999988778888876
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQ 471 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ 471 (1403)
. |...|+++++|+|++|++|+|...||++++. ..|...-+..|+-
T Consensus 195 T-HD~eea~~ladrvvvl~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G 239 (345)
T COG1118 195 T-HDQEEALELADRVVVLNQGRIEQVGPPDEVY--------DHPASRFVARFLG 239 (345)
T ss_pred e-CCHHHHHhhcceEEEecCCeeeeeCCHHHHh--------cCCCccceecccc
Confidence 5 4566999999999999999999999999984 4455555555543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=403.85 Aligned_cols=207 Identities=29% Similarity=0.497 Sum_probs=183.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+|+|+|++|+|||.+||+|+||||||||+|+|+|+++| .+|+|.+||+++++..+
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p---------------------~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP---------------------QQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEeHHhcCHHHH
Confidence 699999999999999999999999999999999999965 58999999999887764
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
|+.++||+|++.+|.. ||+||+.++ .|+.+.++.++|+..++.+ +.+.
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag~~-----~fI~- 593 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALG-------------------------NPEATDEEIIEAAQLAGAH-----EFIE- 593 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcC-------------------------CCCCCHHHHHHHHHHhCcH-----HHHH-
Confidence 6899999999999865 999999885 2444456677777776643 3333
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.++.++||.|| |++.+||||||||++|||||+++|+||+||||||+||+.++..|.+.|.++.+ ++|+|+..|.+
T Consensus 594 --~lP~gy~t~v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl 668 (709)
T COG2274 594 --NLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL 668 (709)
T ss_pred --hcccccccccc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc
Confidence 49999999999 57888999999999999999999999999999999999999999999999864 68999988876
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +.+.+|+|+||++|+|+.+|+++|+++
T Consensus 669 ~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 669 S--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred h--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 4 899999999999999999999999975
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=372.07 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=185.0
Q ss_pred ccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCC
Q 037155 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 894 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ 972 (1403)
.+++..+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.++|.++.. ...+|.+|+|+|+..+||+
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH 91 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhhcccceeecCcccCCC
Confidence 34567899999999999999999999999999999999998764 47999999998765 3457889999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
|||+||+.|+.+++. ...+++.+++++++++.++|.+++++.. .+|||||||||+|||||+.+|++|+||||.
T Consensus 92 ltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 92 MTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 999999999987443 3345667788999999999999998874 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+||..-+..++..++++.+ .|.|.|++|||.+ +...++||+.+|++ |++...|++.
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~ 222 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPE 222 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHH
Confidence 99999999999999999875 4999999999976 78899999999985 8999999864
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=335.42 Aligned_cols=207 Identities=26% Similarity=0.357 Sum_probs=178.8
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC---CCceeEEEEEEcCccCC-----hhhhcceeeEeecC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISGYPKK-----QETFARVSGYCEQT 966 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~ 966 (1403)
++.+++|+|||+.|++++++||+|||||||||||++|.+.. ++..++|+|.++|+++. ...+|+.+|+|+|.
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 35678999999999999999999999999999999999843 34467899999998753 24578899999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+.-|| +|++||+.|+.++....+ ++.++.|++.|+...|.+ ..|++-.. ..+|||||+|||||||+|+.+|+|
T Consensus 97 PnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQQQRLcIARalAv~PeV 170 (253)
T COG1117 97 PNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQQQRLCIARALAVKPEV 170 (253)
T ss_pred CCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhHHHHHHHHHHHhcCCcE
Confidence 99999 999999999988775443 667788999999998864 34444222 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+||||||+|||.+...|-+++.++++ .-|||++||.+. ......|+...+.. |++++.|+.
T Consensus 171 lLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T 232 (253)
T COG1117 171 LLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPT 232 (253)
T ss_pred EEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCH
Confidence 999999999999999999999999974 789999999986 57788899999985 799999986
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=345.78 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.++. .+..
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p---------------------~~G~V~~~g~~v~--~p~~ 72 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP---------------------TSGEVLLDGRPVT--GPGP 72 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCcccC--CCCC
Confidence 5799999999999999999999999999999999999865 5899999999883 4667
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++||+|++.++|.+||+||+.|+....+... .| ...+++..|+.+
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~----------~e------------------------~~~~a~~~L~~V 118 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSK----------AE------------------------ARERAKELLELV 118 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccch----------Hh------------------------HHHHHHHHHHHc
Confidence 89999999999999999999999877654211 11 112456789999
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||.+..|....+ |||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..+.|+++.+| .-.
T Consensus 119 gL~~~~~~~P~q-----LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTH-di~ 192 (248)
T COG1116 119 GLAGFEDKYPHQ-----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH-DVD 192 (248)
T ss_pred CCcchhhcCccc-----cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeC-CHH
Confidence 999999988765 99999999999999999999999999999999999999999999998888888888765 556
Q ss_pred hHHhhcCEEEEEcCC
Q 037155 424 ETYDLFDDIILISEG 438 (1403)
Q Consensus 424 ~~~~~fD~IilL~~G 438 (1403)
|...++|+|++|+++
T Consensus 193 EAv~LsdRivvl~~~ 207 (248)
T COG1116 193 EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHhhhCEEEEecCC
Confidence 899999999999984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=337.65 Aligned_cols=210 Identities=24% Similarity=0.384 Sum_probs=178.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV- 260 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~- 260 (1403)
.++.||+|||+.|++||+++|+|||||||||||++|.|+++| .+|+|.++|+++....
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P---------------------~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP---------------------DKGEILIDGEDIPQLSE 77 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC---------------------CCCeEEEcCcchhccCH
Confidence 356799999999999999999999999999999999999976 5899999999876543
Q ss_pred -----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 -----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 -----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.++++|+++|+-.+|..|||+||+.|-.+-+. . .|+..+++ .
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~---------~----------lp~~~i~~--------------l 124 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT---------K----------LPESLIRE--------------L 124 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhc---------c----------CCHHHHHH--------------H
Confidence 24789999999999999999999999643221 1 11111111 2
Q ss_pred HHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+..-|+..||... +|....+ ||||++||+++|||++.+|+++|+||||+||||.++..|.++++++.+..+.|+
T Consensus 125 v~~KL~~VGL~~~~~~~~PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~ 199 (263)
T COG1127 125 VLMKLELVGLRGAAADLYPSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTV 199 (263)
T ss_pred HHHHHHhcCCChhhhhhCchh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEE
Confidence 2334788899876 6666554 999999999999999999999999999999999999999999999999889898
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++..| .-++++..+|+|++|.+|+|++.|+++++.+
T Consensus 200 i~VTH-Dl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 200 IMVTH-DLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEEC-ChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 88765 4568999999999999999999999999863
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=366.39 Aligned_cols=202 Identities=29% Similarity=0.421 Sum_probs=177.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+|||+|++.+++.+|
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 45799999999999999999999999999999999997663 47999999988643 235678999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|.+.++. .+..+..+.++++++.++|.+..++.++ .||||||||++||+||+.+|++|||||||+|
T Consensus 97 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~g 168 (306)
T PRK13537 97 VRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTG 168 (306)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcC
Confidence 9999998765542 2333444567899999999988887654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 222 (306)
T PRK13537 169 LDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP 222 (306)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999987 68889999999985 799999985
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=322.07 Aligned_cols=201 Identities=25% Similarity=0.407 Sum_probs=177.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cceEEE
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QRTCAY 267 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~y 267 (1403)
.+++.|++||++||+||||||||||||+|||+..| .+|+|.+||++.....| +|.+++
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---------------------~~G~i~i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---------------------ASGEILINGVDHTASPPAERPVSM 75 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---------------------CCceEEEcCeecCcCCcccCChhh
Confidence 46788999999999999999999999999999865 68999999999877665 689999
Q ss_pred eccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc
Q 037155 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 347 (1403)
++|+.++|.++||.+|+.++.. ++- +-.. +....++.++...||..
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~---P~L-----------------kL~a--------------~~r~~v~~aa~~vGl~~ 121 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLS---PGL-----------------KLNA--------------EQREKVEAAAAQVGLAG 121 (231)
T ss_pred hhhccccchhhhhhhhhcccCC---ccc-----------------ccCH--------------HHHHHHHHHHHHhChhh
Confidence 9999999999999999988632 110 1110 01224677889999999
Q ss_pred cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 037155 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYD 427 (1403)
Q Consensus 348 ~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 427 (1403)
+.+...+. |||||||||++||+|+++-+||+||||+|+||+.-+.+...++.+++.+.+.|+++..|||. +...
T Consensus 122 ~~~RLP~~-----LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ 195 (231)
T COG3840 122 FLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAAR 195 (231)
T ss_pred HhhhCccc-----cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHH
Confidence 99999887 99999999999999999999999999999999999999999999999999999999998887 8899
Q ss_pred hcCEEEEEcCCeEEEecChhhHH
Q 037155 428 LFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 428 ~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++|+++++++|+|.++|+.++..
T Consensus 196 ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 196 IADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999988764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=346.09 Aligned_cols=206 Identities=28% Similarity=0.455 Sum_probs=173.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccce
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRT 264 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~ 264 (1403)
++|+|||+.+++|++++|+||||||||||+|+|+|.++| .+|+|.++|.+......+..
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---------------------~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP---------------------SSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---------------------CcceEEEccccccccccCCe
Confidence 599999999999999999999999999999999999865 58999999998877666688
Q ss_pred EEEeccC---CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 265 CAYISQH---DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 265 ~~yv~Q~---d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
||||||. |+-|| +||+|.+..+.--+. ..+ ...++ +....++..|+
T Consensus 77 IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~--g~~---~~~~~-------------------------~d~~~v~~aL~ 125 (254)
T COG1121 77 IGYVPQKSSVDRSFP-ITVKDVVLLGRYGKK--GWF---RRLNK-------------------------KDKEKVDEALE 125 (254)
T ss_pred EEEcCcccccCCCCC-cCHHHHHHccCcccc--ccc---ccccH-------------------------HHHHHHHHHHH
Confidence 9999995 45555 599999987621110 000 00111 11235678899
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+|+.+.+|..+|+ |||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.++ |+||+++. |.
T Consensus 126 ~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vt-HD 198 (254)
T COG1121 126 RVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVT-HD 198 (254)
T ss_pred HcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CC
Confidence 99999999999998 9999999999999999999999999999999999999999999999987 88888865 45
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
...+.++||+|+.|+ +++++.|+++++.
T Consensus 199 L~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 199 LGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred cHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 558999999999996 5688999998875
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=337.86 Aligned_cols=217 Identities=27% Similarity=0.372 Sum_probs=181.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV- 260 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~- 260 (1403)
.++++|+|||+.|++|||++|+|||||||||||++|.|..++ .+|+|.+||.++....
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---------------------t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---------------------TSGEILFNGVQITKLKG 73 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---------------------CcceEEecccchhccch
Confidence 456899999999999999999999999999999999998754 5899999998776543
Q ss_pred -----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 -----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 -----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.++.+||++|++.+.+.+||.+|+..+..-+- +.++-+ -+..+.++. ..
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~--s~~~sl---------fglfsk~dk---------------~~ 127 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT--STWRSL---------FGLFSKEDK---------------AQ 127 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc--hHHHHH---------hCCCCHHHH---------------HH
Confidence 25789999999999999999999988643221 111111 112211111 12
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
.-..|+.+|+.+.+-+..++ |||||+|||+|||||+.+|++++-|||+++|||.++.++++.|+++++..|.|+|
T Consensus 128 Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi 202 (258)
T COG3638 128 ALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI 202 (258)
T ss_pred HHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEE
Confidence 23468899999999988876 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+.+||-. -..++||||+-|++|+|+|.||++++.+
T Consensus 203 ~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 203 VNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred EEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9988754 6778999999999999999999988754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=365.58 Aligned_cols=229 Identities=24% Similarity=0.387 Sum_probs=194.0
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCC
Q 037155 129 VGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGA 208 (1403)
Q Consensus 129 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~Gs 208 (1403)
..+..+.-+++|+|++++- .++++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y---------------------------------~~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSY---------------------------------GPKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEe---------------------------------CCCCceecceeEEecCCCEEEEECCCCC
Confidence 4667788889999998842 1234699999999999999999999999
Q ss_pred ChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---cceEEEeccCCCCCCCCCHHHHHH
Q 037155 209 GKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLD 285 (1403)
Q Consensus 209 GKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrE~l~ 285 (1403)
||||+|++|.++++ .+|+|.+||+++.+..+ |+.||||||+..+|.+ ||.+||.
T Consensus 390 GKSTilr~LlrF~d----------------------~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~ 446 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD----------------------YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIK 446 (591)
T ss_pred CHHHHHHHHHHHhc----------------------cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhh
Confidence 99999999999875 48999999999877654 6889999999999976 9999999
Q ss_pred hhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhH
Q 037155 286 FSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365 (1403)
Q Consensus 286 f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGq 365 (1403)
++. |+...++..++|...+ ..|.+.+ |+++++|.||+ ++.-|||||
T Consensus 447 YGn-------------------------~sas~eeV~e~~k~a~-----~hd~i~~---l~~GY~T~VGe-rG~~LSGGe 492 (591)
T KOG0057|consen 447 YGN-------------------------PSASDEEVVEACKRAG-----LHDVISR---LPDGYQTLVGE-RGLMLSGGE 492 (591)
T ss_pred cCC-------------------------CCcCHHHHHHHHHHcC-----cHHHHHh---ccccchhhHhh-cccccccch
Confidence 872 2333445555555444 2344444 89999999995 555699999
Q ss_pred hhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecC
Q 037155 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGP 445 (1403)
Q Consensus 366 kqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~ 445 (1403)
||||++|||++++|+|+++|||||.||+.|..+|++.+.+.. .++|+|+..|.. .+...||+|++|++|++...|+
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEecc
Confidence 999999999999999999999999999999999999999843 589999988755 5889999999999999999999
Q ss_pred hhhHHH
Q 037155 446 RDNVLE 451 (1403)
Q Consensus 446 ~~~~~~ 451 (1403)
++|++.
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 999975
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=340.55 Aligned_cols=195 Identities=26% Similarity=0.418 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|++||+.|++||+++|+|||||||||||++|.|...| .+|.|.++|.++.....
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---------------------t~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---------------------TSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---------------------CCceEEECCEEcCcCCHHH
Confidence 6899999999999999999999999999999999999865 58999999988765542
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+|||+|+..++|.+||+||+.......+.... ......
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~ 122 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAA 122 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHH
Confidence 36799999999999999999999976554432110 011235
Q ss_pred HHHHHHcCCccccc-ccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 337 DYVLKLLGLDICAD-TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 337 ~~il~~lgL~~~~d-t~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+.+++.+||++..+ ..+.+ |||||||||+|||||+.+|++++.||||.+||+.++..|++.|+++++..|+|+|
T Consensus 123 ~~l~~~lgl~~~~~~~~p~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii 197 (226)
T COG1136 123 EELLEVLGLEDRLLKKKPSE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTII 197 (226)
T ss_pred HHHHHhcCChhhhccCCchh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEE
Confidence 67889999997766 66765 9999999999999999999999999999999999999999999999988888999
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeE
Q 037155 416 VALLQPAPETYDLFDDIILISEGQI 440 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~i 440 (1403)
+++|.| ++...+||++.|.+|++
T Consensus 198 ~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 198 MVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred EEcCCH--HHHHhCCEEEEEeCCee
Confidence 987754 68889999999999984
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=327.03 Aligned_cols=208 Identities=30% Similarity=0.374 Sum_probs=182.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV- 260 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~- 260 (1403)
...++++||||.++.||+++|+|||||||||+|++|++++.| .+|+|++||.+.....
T Consensus 13 ~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P---------------------~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP---------------------DSGKVTIDGVDTVRDPS 71 (245)
T ss_pred CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC---------------------CCceEEEeecccccChH
Confidence 344589999999999999999999999999999999999976 5899999998765432
Q ss_pred -ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 -PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.+|.++.+.-++..||+||||.|.+++.+. ++.+ .+.+++.+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l----------~~~~------------------------~kari~~l 117 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGL----------SRKE------------------------IKARIAEL 117 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh----------hhhH------------------------HHHHHHHH
Confidence 368899999888999999999999998877543 2221 22356778
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
.+.|+|.+|.|+.+|+ +|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .|+++|.+.
T Consensus 118 ~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS- 190 (245)
T COG4555 118 SKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS- 190 (245)
T ss_pred HHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-
Confidence 9999999999999987 999999999999999999999999999999999999999999998864 578888875
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|..+|+..+||+|++|++|++|+.|+.+++.+
T Consensus 191 H~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred ccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 56779999999999999999999999988754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=328.07 Aligned_cols=211 Identities=26% Similarity=0.355 Sum_probs=185.2
Q ss_pred cccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhh----hcceeeEeecC
Q 037155 891 EGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET----FARVSGYCEQT 966 (1403)
Q Consensus 891 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~ 966 (1403)
..+++++++++++||+.+++||++||+|||||||||.+.++.|...+ .+|.|.+||.++.... .+.-+||+||+
T Consensus 10 l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 10 LAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCccccccc
Confidence 34456788999999999999999999999999999999999998764 3799999999876432 23458999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
+..|..+||+||+......+.. +....+++++++++|+.+++.++++.... .||||||+|+.|||||+.+|+.+
T Consensus 88 ~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 88 ASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred chHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEE
Confidence 9999999999999987766542 22334566678999999999999998643 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+||||++|+||.+...|+++++.+++.|..|++|-|... +....|||.+++.+ |++...|...
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 999999999999999999999999999999999999987 78999999999985 8999999864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=363.35 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=176.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------hhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------TFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~ 971 (1403)
..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 4699999999999999999999999999999999998763 479999999876431 23567999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
..||+||+.+..... ..+.++.++++.++++.+||.+..|... ..|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999876543 2334555667899999999998888764 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|++++.|+.
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~ 225 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTV 225 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 9999999999999999999865 999999999986 5778899999998 4899999985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=329.75 Aligned_cols=224 Identities=25% Similarity=0.393 Sum_probs=176.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC---
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--- 259 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--- 259 (1403)
++.+|+|||+.|+++++||++|||||||||||++|....+..-. ..++|+|.++|+++.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~----------------~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG----------------ARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcC----------------ceEEEEEEECCeeccCCCCC
Confidence 45799999999999999999999999999999999987653211 12689999999987553
Q ss_pred --CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 --VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 --~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..||.+|+|+|.|.-|| +|++||+.|+.|.+|... .+.++. ++
T Consensus 83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~--------------------~~ldei--------------Ve 127 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD--------------------KELDEI--------------VE 127 (253)
T ss_pred HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch--------------------HHHHHH--------------HH
Confidence 23789999999999999 899999999999887532 111221 12
Q ss_pred HHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 338 YVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 338 ~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
..|+.-+|-+ ..|.+= +-..+|||||+||++|||||+-+|+|||||||||+|||.++..|.+++.++.+ +-|+|+
T Consensus 128 ~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIvi 203 (253)
T COG1117 128 SSLKKAALWDEVKDRLH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVI 203 (253)
T ss_pred HHHHHhHhHHHhHHHhh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEE
Confidence 2222222221 112211 22356999999999999999999999999999999999999999999999975 567777
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l 470 (1403)
..| ...+..+..|+...+..|++|+.|+.+++ |..|.++.+.||+
T Consensus 204 VTH-nmqQAaRvSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 204 VTH-NMQQAARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred EeC-CHHHHHHHhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 655 55588899999999999999999999987 5667777777765
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=349.20 Aligned_cols=203 Identities=25% Similarity=0.379 Sum_probs=173.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 970 (1403)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.+||++|++.++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 35699999999999999999999999999999999997653 47999999987532 23456799999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+.+||+||+.+...... ....++..+.++++++.++|.+..++.+ ..|||||||||+||++|+.+|+||+|||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDE 162 (235)
T cd03261 90 DSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDE 162 (235)
T ss_pred CCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999988643221 1233444566889999999988777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999864 899999999986 57788999999985 789988874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=366.76 Aligned_cols=203 Identities=26% Similarity=0.376 Sum_probs=178.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|++.++|++||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35699999999999999999999999999999999998663 47999999987643 2235789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.|....+ ..+..+..+.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+||||||+|
T Consensus 94 ~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 94 RENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred HHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999986543 2344555667899999999998888764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+.++..+.+.|+++.++ |.|+|++||+++ ++.+.+|++++|+ +|+++..|+..
T Consensus 166 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~ 220 (356)
T PRK11650 166 DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPV 220 (356)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999998765 899999999986 6889999999998 58999999853
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=360.33 Aligned_cols=202 Identities=28% Similarity=0.412 Sum_probs=176.5
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45799999999999999999999999999999999998653 47999999987543 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+|++.+.+.++. ....+.++.++++++.++|.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 2233445568899999999888777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67889999999985 899998875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=365.02 Aligned_cols=202 Identities=26% Similarity=0.384 Sum_probs=178.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+|.+|||+|+..++|++||
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 35699999999999999999999999999999999998663 47999999987643 2345789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.|+...+ ..+..+.++.++++++.++|.++.++.. ..|||||||||+|||||+.+|++|+|||||++|
T Consensus 94 ~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 94 ADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999986543 2334556677999999999999888764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |++++.|+.
T Consensus 166 D~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~ 219 (353)
T TIGR03265 166 DARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTP 219 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999998765 899999999986 68899999999985 899999985
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=362.20 Aligned_cols=214 Identities=25% Similarity=0.376 Sum_probs=183.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|++..+ +++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 46677765443 346799999999999999999999999999999999998663 479999999876
Q ss_pred Ch--hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 037155 952 KQ--ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029 (1403)
Q Consensus 952 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1029 (1403)
.. ...++.+||++|++.+++.+||+|++.+.+.++. ....+..+.++++++.++|.+..++.++ .|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHH
Confidence 43 2356779999999999999999999987665432 2233344567889999999988887754 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1030 rqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 68889999999985 79999998
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 5
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=363.64 Aligned_cols=203 Identities=28% Similarity=0.426 Sum_probs=178.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..+|.+|||+|+..++|++||
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 35699999999999999999999999999999999998763 479999999876432 235789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.|+...+. .+..+.++.++++++.++|.++.++.. ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 96 ~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~L 167 (351)
T PRK11432 96 GENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNL 167 (351)
T ss_pred HHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999999875542 334556677899999999998888764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+.++..+.+.|+++.++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 168 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 168 DANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999765 899999999986 68899999999985 8999998853
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=360.37 Aligned_cols=206 Identities=27% Similarity=0.353 Sum_probs=176.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++.....
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p---------------------~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---------------------TSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998865432
Q ss_pred ----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 262 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 262 ----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
++.++|++|+..+++.+||+||+.|..+..+.. + .+ ...++.
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----------~----------~~--------------~~~~v~ 122 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----------K----------DE--------------IKRKVT 122 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHH
Confidence 467999999999999999999999864332210 0 00 112346
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..|..+++ |||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+.|+|++
T Consensus 123 e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiili 197 (343)
T TIGR02314 123 ELLALVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI 197 (343)
T ss_pred HHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 688999999988887765 999999999999999999999999999999999999999999999987668888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|+. ..+.++||+|++|++|++++.|+++++.
T Consensus 198 TH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 198 THEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred eCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7654 4778899999999999999999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=363.68 Aligned_cols=203 Identities=26% Similarity=0.347 Sum_probs=178.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeE--EEEEEcCccCCh-hhhcceeeEeecCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+ |+|.++|.+... ...++.+|||+|+..++|++
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35699999999999999999999999999999999997664 36 999999987643 22457799999999999999
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+||+.|....+ ..+..+.++.++++++.++|.+..++.+ +.|||||||||+|||||+.+|++|+|||||+
T Consensus 95 tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s 166 (362)
T TIGR03258 95 KVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166 (362)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9999999986543 2344555667899999999999888764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+..
T Consensus 167 ~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 167 ALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999876 799999999986 67889999999985 8999999853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=365.00 Aligned_cols=206 Identities=26% Similarity=0.375 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+| .+|+|.++|.++....+ +
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---------------------~~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---------------------TSGEIWIGGRVVNELEPAD 75 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.+||++||+||+.|+.+.++.. +. + ....++.+++.
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~ 121 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMP----------KA----------E--------------IEERVAEAARI 121 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 78999999999999999999999975432210 00 0 11235678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+.+ |||||||||+|||||+.+|++|+||||||+||+.++.++.+.|+++.+..+.|+|++.|++
T Consensus 122 ~gL~~~~~~~~~~-----LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~- 195 (356)
T PRK11650 122 LELEPLLDRKPRE-----LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ- 195 (356)
T ss_pred cCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-
Confidence 9999988888765 9999999999999999999999999999999999999999999998876688888877655
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 196 ~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 196 VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 5899999999999999999999999874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=331.42 Aligned_cols=199 Identities=27% Similarity=0.389 Sum_probs=170.0
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCC--CCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDI--HSPH 972 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~--~~~~ 972 (1403)
.+|+|||++|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.... .+.+.+.+|+||+. +-|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 599999999999999999999999999999999998764 479999999875443 36788999999985 5689
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.||++.|.-.... .+.++.+ +++.++++.+||.+ .+++. +.+||||||||+||||||+.+|++|+||||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 9999998766543 2223333 23899999999965 34443 557999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||+||+..+..|+++|.++.++ |.|.|+++||.+ -+...|||+++|++ |++++.+|..
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechh
Confidence 9999999999999999999754 789999999987 47889999999985 8999999864
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=363.86 Aligned_cols=222 Identities=26% Similarity=0.421 Sum_probs=183.4
Q ss_pred Cccccc-cCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeE
Q 037155 863 GMILPF-RPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 941 (1403)
Q Consensus 863 g~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~ 941 (1403)
|...|. -.-.++|+|+++.++..+ +.++|||+||+|+|||.|||+||||+||||+.++|....+ +.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 444442 334789999999887543 4679999999999999999999999999999999998765 358
Q ss_pred EEEEEcCccCC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHH-----HHHHHHHHcCCCCcc
Q 037155 942 GDIKISGYPKK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKI-----FVDEVMELVELKPLR 1013 (1403)
Q Consensus 942 G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~~~ 1013 (1403)
|+|.+||+|++ +..+++.+|+|.|+|.++. -||+|||.|+.. +.+.++... .+.+-+ .++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCcccc
Confidence 99999999875 4567889999999999985 599999999854 222322211 122222 2556668
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 037155 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1093 (1403)
Q Consensus 1014 ~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1093 (1403)
|+.||..|. .||||||||++|||||++||.||||||+||.||+++...|++.|.++.+ ++|||++.|+++ ..+.+|
T Consensus 595 ~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHAD 670 (716)
T ss_pred ccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--Hhhhcc
Confidence 999998766 6999999999999999999999999999999999999999999999875 699999999986 567899
Q ss_pred eEEEEecCcEEEEecC
Q 037155 1094 ELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1094 ~i~ll~~gG~~~~~g~ 1109 (1403)
+|+++++ |++++.|.
T Consensus 671 ~Ivvi~~-G~V~E~G~ 685 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGT 685 (716)
T ss_pred EEEEEcC-CeEEeccc
Confidence 9999985 89999996
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=361.80 Aligned_cols=205 Identities=28% Similarity=0.426 Sum_probs=177.5
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|++.++|++||
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35699999999999999999999999999999999997653 47999999987643 2234679999999999999999
Q ss_pred HHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 976 YESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 976 ~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
+||+.|....+.. ...+.++..+.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+|
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~ 166 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGA 166 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999997654211 12334455667899999999998888764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|++ |++++.|+.
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~ 221 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTP 221 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999865 899999999986 68889999999985 899999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=392.42 Aligned_cols=214 Identities=25% Similarity=0.424 Sum_probs=184.6
Q ss_pred CCCcccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC
Q 037155 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN 257 (1403)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~ 257 (1403)
++.+++.+||+|+|+++++|+.+||||||||||||.+.+|-..++| .+|.|.+||++++
T Consensus 997 YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp---------------------~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 997 YPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP---------------------DAGKVKIDGVDIK 1055 (1228)
T ss_pred CCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC---------------------CCCeEEECCcccc
Confidence 4556788999999999999999999999999999999999998865 6899999999998
Q ss_pred CCCc---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 258 EFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 258 ~~~~---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
+.+. |+++|.|+|+|.+|.. |+||||.|+.+ +.+.++.++|+..++.
T Consensus 1056 ~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-------------------------~vs~~eIi~Aak~ANa---- 1105 (1228)
T KOG0055|consen 1056 DLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-------------------------EVSEEEIIEAAKLANA---- 1105 (1228)
T ss_pred cCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhhh----
Confidence 8765 6899999999999965 99999999721 0123455566655543
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 335 ~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.+.+ .+|++++||.||+ ++..||||||||++||||+++||+||||||.||+||+++.+.+.++|.+... |+|.
T Consensus 1106 -H~FI---~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~ 1178 (1228)
T KOG0055|consen 1106 -HNFI---SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTT 1178 (1228)
T ss_pred -HHHH---hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcE
Confidence 2333 3599999999995 5667999999999999999999999999999999999999999999998764 7888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|+.-|.. .+.+.+|.|+|+++|+|+++|++++++.
T Consensus 1179 IvIAHRL--STIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1179 IVIAHRL--STIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEecch--hhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 8877765 5899999999999999999999999975
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=362.27 Aligned_cols=206 Identities=26% Similarity=0.400 Sum_probs=178.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+.+|+|+|+.+++||+++|+|||||||||||++|+|+.++ .+|+|.++|.++....+ +
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---------------------~~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP---------------------TEGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4589999999999999999999999999999999999865 58999999998876544 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
|.++||+|+..+||++||+||+.|+.+.++... . + ....++++++.
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~----------~----------~--------------~~~~v~~~l~~ 123 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPK----------E----------E--------------RKQRVKEALEL 123 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH----------H----------H--------------HHHHHHHHHHH
Confidence 789999999999999999999999755332110 0 0 11245678899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||.+..|..+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|++
T Consensus 124 ~gl~~~~~r~~~~-----LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~- 197 (351)
T PRK11432 124 VDLAGFEDRYVDQ-----ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ- 197 (351)
T ss_pred cCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-
Confidence 9999888877755 9999999999999999999999999999999999999999999999876688888776655
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 198 ~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 198 SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5899999999999999999999998874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=339.58 Aligned_cols=200 Identities=30% Similarity=0.440 Sum_probs=169.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 35699999999999999999999999999999999997653 47999999987543 2234679999999988899999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+|++.+...... .......+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 90 AENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred HHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654321 223334456789999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1056 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|+.++..+++.|+++++ .|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999976 4899999999986 57788999999985 7777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=362.89 Aligned_cols=206 Identities=28% Similarity=0.435 Sum_probs=178.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+| .+|+|.++|+++....+ +
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ---------------------TAGTIYQGGRDITRLPPQK 75 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4689999999999999999999999999999999999865 58999999998865443 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
|.++||+|+..+||++||+||+.|+.+.++.. +.+ ....++.+++.
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~ 121 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----------RAE------------------------VAERVAELLDL 121 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 78999999999999999999999975432110 000 11245778999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+.+ |||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+..+.|+|++.|++
T Consensus 122 l~L~~~~~~~~~~-----LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~- 195 (353)
T TIGR03265 122 VGLPGSERKYPGQ-----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ- 195 (353)
T ss_pred cCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-
Confidence 9999998887765 9999999999999999999999999999999999999999999999876688888877665
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|++++.|+++++.
T Consensus 196 ~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 196 EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4899999999999999999999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=338.91 Aligned_cols=194 Identities=25% Similarity=0.347 Sum_probs=166.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 4599999999999999999999999999999999997653 47999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+||+||+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988754332 222334456889999999988777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999877999999999986 56778999999985 54
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=359.54 Aligned_cols=203 Identities=24% Similarity=0.313 Sum_probs=177.8
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhh----cceeeEeecCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETF----ARVSGYCEQTDI 968 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~----~~~~gyv~Q~~~ 968 (1403)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ... ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456799999999999999999999999999999999998763 47999999987643 222 568999999999
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
++|++||+||+.|...+. ....++..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2344556677899999999988877764 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||++||+.++..+++.++++.++ |+|||++||+++ ++.+.+|++++|+ +|+++..|+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~ 214 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTP 214 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCH
Confidence 9999999999999999999999754 899999999986 5788999999997 5899999874
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=339.21 Aligned_cols=200 Identities=27% Similarity=0.414 Sum_probs=172.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
+.+|+|+|++|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 5699999999999999999999999999999999997653 47999999987642 3567999999998888999999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
|+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754332 223334456889999999987777654 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCC
Q 037155 1058 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPL 1110 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~ 1110 (1403)
.++..+++.|+++.+ .|+|||+++|+++ ++.+.||++++|++ +|+++..+++
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999864 4899999999986 57788999999985 4899888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=338.97 Aligned_cols=214 Identities=23% Similarity=0.358 Sum_probs=185.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.+++++|.++ ++..+|+|+|++|++|+.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYP------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcC------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 45677776542 125799999999999999999999999999999999998764 3699999998854
Q ss_pred ----hhhhcceeeEeecCCCC-CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 037155 953 ----QETFARVSGYCEQTDIH-SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 953 ----~~~~~~~~gyv~Q~~~~-~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1027 (1403)
...+++.+|||+|++.. +-.-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 45578889999999854 35779999999987543 455567788899999999999998875 458999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|||++|||.+ .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999987 58888999999985 89999
Q ss_pred ecCC
Q 037155 1107 AGPL 1110 (1403)
Q Consensus 1107 ~g~~ 1110 (1403)
+|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=313.56 Aligned_cols=196 Identities=27% Similarity=0.378 Sum_probs=172.2
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
..++.|.+||++||+||||||||||||+|+|...+ .+|+|+|||.+... ....|-++.++|+.++|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 46788999999999999999999999999998764 37999999998654 3355779999999999999999999988
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~ 1061 (1403)
+..-.+. .+ .+.++.++.++..+||..+.+++.+ .|||||||||++||+|+++-+|++||||+|.|||.-+.
T Consensus 95 Gl~P~Lk--L~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGLK--LN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcccc--cC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 7542221 22 3445668999999999999998754 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1062 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1062 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++..++.++++ ++.|++++||+|+ |.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999985 4899999999998 89999999999985 899999985
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=363.09 Aligned_cols=206 Identities=29% Similarity=0.447 Sum_probs=173.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---c
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---P 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---~ 261 (1403)
++++|+|+++++|+.++|+|+||||||||+++|+|++++ .+|+|.+||++..+.. +
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---------------------~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---------------------TQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---------------------CCceEEECCccccccCHHHH
Confidence 799999999999999999999999999999999999865 5899999999887665 5
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+++++||+|++.+|+. |+||||.++.. +.+.++..+++...+ +.+
T Consensus 394 ~k~i~~v~Q~p~lf~g-TireNi~l~~~-------------------------~~s~e~i~~al~~a~---------l~~ 438 (559)
T COG4988 394 RKQISWVSQNPYLFAG-TIRENILLARP-------------------------DASDEEIIAALDQAG---------LLE 438 (559)
T ss_pred HhHeeeeCCCCccccc-cHHHHhhccCC-------------------------cCCHHHHHHHHHHhc---------HHH
Confidence 7899999999999976 99999998621 111122222222111 233
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+.-+++.||.+| +.+++|||||+|||++||||+.+++++++||||++||.+|+..|.+.|.++++ ++|+++..|++
T Consensus 439 ~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl 515 (559)
T COG4988 439 FVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL 515 (559)
T ss_pred hhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh
Confidence 3333678899999 57899999999999999999999999999999999999999999999999986 58999888865
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+....+|+|++|++|+++++|.++++.+
T Consensus 516 --~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 516 --EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred --HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 4677899999999999999999999853
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=355.02 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=174.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35699999999999999999999999999999999997653 47999999987532 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+|++.+.+.... .+..+..+.++++++.++|.+..++.++ .||||||||++||++|+.+|++|||||||+|
T Consensus 94 v~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 165 (303)
T TIGR01288 94 VRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTG 165 (303)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987554321 2233334567889999999887777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 166 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999878999999999986 67789999999985 899999874
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.73 Aligned_cols=199 Identities=26% Similarity=0.445 Sum_probs=170.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
++.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ..++.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35699999999999999999999999999999999997653 47999999987643 3456799999999998999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99988654432 223344456889999999987776653 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999877899999999986 56788999999985 7877653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=360.04 Aligned_cols=206 Identities=23% Similarity=0.386 Sum_probs=177.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcc--eEEEECCccCCCCCc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS--GKITYCGHELNEFVP 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~I~~~G~~~~~~~~ 261 (1403)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++| .+ |+|.++|+++....+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---------------------~~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA---------------------AGLTGRIAIADRDLTHAPP 76 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCCEEEEECCEECCCCCH
Confidence 3699999999999999999999999999999999999865 47 999999998865443
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+||++||+||+.|+.+..+.. + .+ ....++.++
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~----------~----------~~--------------~~~~v~~~l 122 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMP----------K----------AD--------------IAERVADAL 122 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHH
Confidence 478999999999999999999999975432211 0 00 112356789
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEe
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIM-DVTMIVALL 419 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~ 419 (1403)
+.+||++..|+.+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.|+|++.|
T Consensus 123 ~~~gL~~~~~~~~~~-----LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH 197 (362)
T TIGR03258 123 KLVGLGDAAAHLPAQ-----LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197 (362)
T ss_pred HhcCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999999999988865 99999999999999999999999999999999999999999999988765 678777765
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.+ .++..++|+|++|++|+++..|+++++.
T Consensus 198 d~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 198 DQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 54 5889999999999999999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=360.70 Aligned_cols=213 Identities=23% Similarity=0.357 Sum_probs=184.0
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 15 L~l~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~ 79 (375)
T PRK09452 15 VELRGISKSF-------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDIT 79 (375)
T ss_pred EEEEEEEEEE-------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 6677776543 235699999999999999999999999999999999998763 4799999998764
Q ss_pred h-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 953 Q-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 953 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
. ...+|.+|||+|++.++|++||+||+.|+...+ ..+..+.++.++++++.++|.+..++.+ ..|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 3 223577999999999999999999999986543 2334455567899999999998888764 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+.
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~ 229 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTP 229 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999764 899999999986 68889999999985 899999875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=359.44 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=178.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++| .+|+|.++|.++....+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---------------------~~G~I~i~G~~i~~~~~~ 63 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---------------------TAGQIFIDGENIMKQSPV 63 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCCHH
Confidence 45699999999999999999999999999999999999865 58999999998876543
Q ss_pred ------cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 262 ------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 262 ------~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
++.++||+|++.++|++||+||+.|+.+..+.. +.+ ....
T Consensus 64 ~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~----------~~~------------------------~~~~ 109 (363)
T TIGR01186 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWP----------EQE------------------------RKEK 109 (363)
T ss_pred HHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCC----------HHH------------------------HHHH
Confidence 568999999999999999999999875433211 000 0123
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+..+++.+||++..++.+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|
T Consensus 110 ~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii 184 (363)
T TIGR01186 110 ALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184 (363)
T ss_pred HHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 46678999999888888765 9999999999999999999999999999999999999999999998766688888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.|+. .++..++|+|++|++|+++..|+++++.
T Consensus 185 ~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 185 FITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 876654 4788999999999999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.15 Aligned_cols=202 Identities=30% Similarity=0.402 Sum_probs=172.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 35699999999999999999999999999999999997653 47999999976532 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+|++.+....+. ...++..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 90 GWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999988754432 223334456889999999987777664 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 9999999999999999876 899999999986 57788999999985 788888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=387.08 Aligned_cols=207 Identities=27% Similarity=0.393 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++++||+.+||+||||||||||+++|+|.+ | .+|+|.+||+++.+...
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p---------------------~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P---------------------YQGSLKINGIELRELDPES 420 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C---------------------CCcEEEECCEecccCCHHH
Confidence 46999999999999999999999999999999999998 5 47999999998877654
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. ||+|||.++. |+.+.+++.+++..++. .+. +
T Consensus 421 lr~~i~~v~Q~~~LF~~-TI~eNI~~g~-------------------------~~~~~eei~~al~~a~l-----~~~-i 468 (588)
T PRK11174 421 WRKHLSWVGQNPQLPHG-TLRDNVLLGN-------------------------PDASDEQLQQALENAWV-----SEF-L 468 (588)
T ss_pred HHhheEEecCCCcCCCc-CHHHHhhcCC-------------------------CCCCHHHHHHHHHHhCH-----HHH-H
Confidence 5789999999999975 9999998852 11222333444433331 122 2
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.|++++||.||+ .+..||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. .++|+|++.|+
T Consensus 469 --~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHr 543 (588)
T PRK11174 469 --PLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQ 543 (588)
T ss_pred --Hhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecC
Confidence 2488899999996 467799999999999999999999999999999999999999999999875 37899998888
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ ++.+.+|+|++|++|++++.|+++++.+
T Consensus 544 l--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 544 L--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred h--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 7 5778899999999999999999999864
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.91 Aligned_cols=206 Identities=30% Similarity=0.448 Sum_probs=176.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+.+|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.... .
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p---------------------~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP---------------------DAGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEecccchHHH
Confidence 4699999999999999999999999999999999999865 5899999999875432 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.+|||+|++.+++.+||+||+.|.++..+... .+ ....++.+++
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~ 124 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA--------------------AA--------------ARALVPPLLE 124 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHH
Confidence 4779999999999999999999998655432110 00 0113456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .|+|++++.|+.
T Consensus 125 ~~~l~~~~~~~~~~-----LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l 198 (306)
T PRK13537 125 FAKLENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM 198 (306)
T ss_pred HcCCchHhcCchhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH
Confidence 99999999998865 999999999999999999999999999999999999999999999865 478888877665
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. ++.++||+|++|++|++++.|+++++.+
T Consensus 199 ~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 199 E-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred H-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 8889999999999999999999998854
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=361.16 Aligned_cols=218 Identities=26% Similarity=0.368 Sum_probs=183.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++ .+|+|.++|.++....+ +
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p---------------------~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP---------------------DSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4589999999999999999999999999999999999865 58999999998865443 5
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
|.++||+|++.+||++||+||+.|+.+.++.. +. + ....++.+++.
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----------~~----------~--------------~~~~~~~~l~~ 131 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTP----------AA----------E--------------ITPRVMEALRM 131 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 78999999999999999999999975432210 00 0 11235678899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+.+ |||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+..+.|+|++.|. .
T Consensus 132 ~~l~~~~~~~p~~-----LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-~ 205 (375)
T PRK09452 132 VQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-Q 205 (375)
T ss_pred cCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-H
Confidence 9999988888765 999999999999999999999999999999999999999999999987668888877655 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l 470 (1403)
.++..++|+|++|++|+++..|+++++. ..|....+++|+
T Consensus 206 ~ea~~laDri~vl~~G~i~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 206 EEALTMSDRIVVMRDGRIEQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH--------hCcccHHHHHhc
Confidence 5899999999999999999999998873 345544455544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.85 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=175.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45699999999999999999999999999999999998653 47999999987643 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|.|++.+.+.++. .+.++..+.++++++.+||.+..++.++ .||||||||++||+||+++|++|||||||+|
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~g 163 (301)
T TIGR03522 92 VREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTG 163 (301)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999998776542 2233444568899999999988887654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 164 LD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 164 LDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999965 799999999986 68889999999985 899999985
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=323.62 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=188.6
Q ss_pred cccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCC
Q 037155 891 EGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 891 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~ 970 (1403)
.+.+.+++.+++|+||.++||++.|++|+|||||||++++|.|...+ .+|+|.++|.+.+.. .+.+|||+|.+.-++
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy 84 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQE-IKNRIGYLPEERGLY 84 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhh-hhhhcccChhhhccC
Confidence 34456778999999999999999999999999999999999998764 489999999998754 456799999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|.+||.|.|.|.|.++ +++.++.+..++.+|+.+++.......+ +.||.|++|++.+-.+++++|++++|||
T Consensus 85 ~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 85 PKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred ccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 9999999999999886 4667777788999999999998887765 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+|||||.+.+.+.+.+.++++.|.|||+++|+++ .+.++||++++|++ |+.+..|++.
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 99999999999999999999999999999999997 68999999999985 7888889863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=340.76 Aligned_cols=205 Identities=28% Similarity=0.404 Sum_probs=172.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h-hcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T-FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35699999999999999999999999999999999997653 479999999875431 1 23569999999999999
Q ss_pred CCHHHHHHHHHhhhCCCC-------CcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 973 VTLYESLLYSAWLRLSSD-------VDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+||+|++.+......... ....+..+.++++++.+++.+..++.+ +.||||||||++||++|+.+|++
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 164 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKL 164 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988754322110 012334456889999999987777654 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+++.|+++++.|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 9999999999999999999999999877999999999986 57788999999985 788888864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=358.93 Aligned_cols=214 Identities=24% Similarity=0.374 Sum_probs=183.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.+++++... ++..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 36677765433 235699999999999999999999999999999999998763 479999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 037155 952 KQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 952 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1030 (1403)
.. ...+|.+|||+|++.++|++||.||+.|+...+ ..+..+.+++++++++.++|.+..++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999986543 2234555667899999999998888764 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++|||++ ++...+|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999999865 4899999999986 68899999999985 89999998
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=334.85 Aligned_cols=199 Identities=27% Similarity=0.403 Sum_probs=169.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++..|++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 4699999999999999999999999999999999998653 479999999875431 2235799999999888899999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+....+. ...++.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 91 DNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654321 223344556789999999987777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1057 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999864 899999999986 57788999999985 7887765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=359.64 Aligned_cols=202 Identities=26% Similarity=0.387 Sum_probs=175.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+||++|+..++|++||
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35699999999999999999999999999999999998653 47999999987643 2234679999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.|....+. ....+.++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|||||||+||
T Consensus 93 ~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~L 164 (369)
T PRK11000 93 AENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164 (369)
T ss_pred HHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999998765432 233445567899999999988877764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|++ |+++..|+.
T Consensus 165 D~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~ 218 (369)
T PRK11000 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999998764 899999999986 67889999999985 899998875
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=336.46 Aligned_cols=198 Identities=29% Similarity=0.456 Sum_probs=170.5
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCCHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 699999999999999999999999999999999997653 47999999987642 23456799999999989999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+....+. ....+..+.++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 99987654331 223344566889999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999877999999999986 57788999999985 7777643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=340.29 Aligned_cols=204 Identities=29% Similarity=0.416 Sum_probs=171.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.+||+
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 5699999999999999999999999999999999997653 479999999875432 2245699999999988899999
Q ss_pred HHHHHHHhhhCCC-CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 977 ESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 977 e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
||+.+....+... .....+..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|+|||||+||
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 167 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9998865432110 0122333456788999999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (239)
T cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP 221 (239)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 999999999999999865 899999999986 57788999999985 789888874
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=355.93 Aligned_cols=201 Identities=25% Similarity=0.338 Sum_probs=174.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 5699999999999999999999999999999999998653 47999999987642 123567999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+||+||+.+....+. .+..+..+.++++++.+||.+..++.+ ..||||||||++|||+|+.+|+|||||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 96 SRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999998765432 233444566889999999988777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~ 225 (343)
T PRK11153 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTV 225 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999764 899999999986 57788999999985 899998875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=360.76 Aligned_cols=207 Identities=29% Similarity=0.376 Sum_probs=176.6
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 972 (1403)
+++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|++.+++.
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 346799999999999999999999999999999999997653 47999999987643 3456789999999999899
Q ss_pred CCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+||+|++.+....... .....++..+.++++++.+++.+..++.+ +.||||||||+.|||+|+++|++||||||
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEP 166 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEP 166 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999886432110 01112334456899999999998888764 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+..
T Consensus 167 tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ 224 (402)
T PRK09536 167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPA 224 (402)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999877999999999987 57889999999985 8899999854
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=338.88 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=172.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hh-hcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ET-FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~-~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 35699999999999999999999999999999999997653 47999999987532 11 23569999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+||+||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 90 LTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999987643322 222334456789999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 162 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 217 (232)
T cd03218 162 AGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTP 217 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCH
Confidence 999999999999999999877999999999986 68889999999985 789888875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=333.50 Aligned_cols=192 Identities=29% Similarity=0.390 Sum_probs=163.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCC-CCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI-HSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 976 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+......++.+||++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 5699999999999999999999999999999999997653 47999999987654445567999999974 34567999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+...... . ..+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD---A----GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC---c----cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987643221 1 1234788999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 57778999999985 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.27 Aligned_cols=203 Identities=25% Similarity=0.318 Sum_probs=170.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC-----CCceeEEEEEEcCccCCh-----hhhcceeeEeecC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQT 966 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~-----~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~ 966 (1403)
++.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++|.+... ...++.+||++|+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 356999999999999999999999999999999999976 4 347999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
+.++ .+||+||+.+....+.. ....+.++.++++++.+++.+..+.... +..||||||||++||++|+.+|++|
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8887 79999999887544321 1112234567899999999876665420 2479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||||+|||+.++..+++.|++++++ +|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 999999999999999999999999876 99999999986 57788999999985 789888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=333.73 Aligned_cols=196 Identities=30% Similarity=0.434 Sum_probs=168.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
++.+|+|+||++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 35699999999999999999999999999999999997653 47999999987543 2345679999999988899999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.+....+. . ..+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+||
T Consensus 90 ~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 90 RENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999988654321 1 1234788999999988777654 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999877899999999986 56778999999985 7887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=339.81 Aligned_cols=204 Identities=29% Similarity=0.370 Sum_probs=170.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 5699999999999999999999999999999999997653 47999999987542 234567999999999999
Q ss_pred CCCHHHHHHHHHhhh-----CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 972 HVTLYESLLYSAWLR-----LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
.+||+||+.+..... ...........+.++++++.++|.+..++.+ ..|||||||||+||++|+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998753210 0001111233456788999999987666643 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999987 57779999999985 789988874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=344.11 Aligned_cols=207 Identities=24% Similarity=0.293 Sum_probs=174.9
Q ss_pred ccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h----hcceeeEee
Q 037155 892 GVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T----FARVSGYCE 964 (1403)
Q Consensus 892 ~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~ 964 (1403)
.+.++.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++
T Consensus 31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 3445667899999999999999999999999999999999997653 479999999875421 1 135699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 037155 965 QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS 1044 (1403)
Q Consensus 965 Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ 1044 (1403)
|++.+++.+||+||+.+...... .......+.++++++.++|.+..++.+ ..||||||||++||+||+.+|+
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999988754321 223334456789999999988777764 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1045 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1045 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999754 899999999986 57788999999985 789888874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=356.48 Aligned_cols=206 Identities=25% Similarity=0.337 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
..+|+|+|+.+++||+++|+|||||||||||++|+|..++ .+|+|.++|+++....+ +
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP---------------------TAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 3689999999999999999999999999999999999865 58999999998765443 5
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
|.+|||+|++.+||++||+||+.|+.+.++.. + .+ ....++.+++.
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----------~----------~~--------------~~~~v~~~l~~ 136 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLP----------K----------AE--------------IASRVNEMLGL 136 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHH
Confidence 78999999999999999999999975432210 0 00 11235678899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||.+..+..+.+ |||||||||+|||||+.+|++|+|||||++||..++.++.+.|+++.+..+.|+|++.|++
T Consensus 137 l~L~~~~~~~~~~-----LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~- 210 (377)
T PRK11607 137 VHMQEFAKRKPHQ-----LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ- 210 (377)
T ss_pred cCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-
Confidence 9999888877765 9999999999999999999999999999999999999999999998776688888776654
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 211 ~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 211 EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 4889999999999999999999999874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=324.26 Aligned_cols=209 Identities=27% Similarity=0.377 Sum_probs=181.4
Q ss_pred ccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCCC
Q 037155 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDIH 969 (1403)
Q Consensus 894 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~ 969 (1403)
..+...+++|||+++++||++||+||||||||||+|+|+|..++ ..|+|.++|.++... ..+.-++.-+|...+
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 44668899999999999999999999999999999999997664 479999999986532 234557889999999
Q ss_pred CCCCCHHHHHHHHHhhhC--------CC-CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh
Q 037155 970 SPHVTLYESLLYSAWLRL--------SS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV 1040 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~--------~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~ 1040 (1403)
+++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|...| +||+||||||.|||||+
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa 165 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALA 165 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHh
Confidence 999999999998755331 11 11235566778999999999999999876 69999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
.+|++|+||||.+||.+.....+.+.|+++.+. |.||+++-||++ -++.+|||++||+. |+++..|++.
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 999999999999999999999999999999874 699999999998 48999999999985 8999999864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=335.39 Aligned_cols=193 Identities=30% Similarity=0.439 Sum_probs=164.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------h-hcceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------T-FARVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~~~~~ 970 (1403)
+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 5699999999999999999999999999999999998653 479999999875421 1 245799999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+.+||+|++.+....+. .......+.++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998765432 222334456889999999987777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.||++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999976 5899999999986 34 48999999986 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=346.87 Aligned_cols=230 Identities=26% Similarity=0.415 Sum_probs=187.6
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCC
Q 037155 129 VGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGA 208 (1403)
Q Consensus 129 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~Gs 208 (1403)
-.+..++..+.|+|+++. +.+++++|+||||++.||+.+|++||||+
T Consensus 529 ~pl~~~~G~i~fsnvtF~---------------------------------Y~p~k~vl~disF~v~pGktvAlVG~SGa 575 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFA---------------------------------YDPGKPVLSDISFTVQPGKTVALVGPSGA 575 (790)
T ss_pred CCccccCCeEEEEEeEEe---------------------------------cCCCCceeecceEEecCCcEEEEECCCCC
Confidence 345567789999999883 22456899999999999999999999999
Q ss_pred ChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---ccceEEEeccCCCCCCCCCHHHHHH
Q 037155 209 GKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRETLD 285 (1403)
Q Consensus 209 GKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrE~l~ 285 (1403)
||||++++|....+. .+|.|+++|+++.... .|+.||.|||+..+|.+ |+..||.
T Consensus 576 GKSTimRlLfRffdv---------------------~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIr 633 (790)
T KOG0056|consen 576 GKSTIMRLLFRFFDV---------------------NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIR 633 (790)
T ss_pred chhHHHHHHHHHhhc---------------------cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeehee
Confidence 999999999988753 4899999999886533 46789999999999976 9999998
Q ss_pred hhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhH
Q 037155 286 FSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365 (1403)
Q Consensus 286 f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGq 365 (1403)
|+ +|+..-++..+|+..++ ..| ++++++++++|+||+ ++-.|||||
T Consensus 634 ya-------------------------k~~AsneevyaAAkAA~-----IHd---rIl~fPegY~t~VGE-RGLkLSGGE 679 (790)
T KOG0056|consen 634 YA-------------------------KPSASNEEVYAAAKAAQ-----IHD---RILQFPEGYNTRVGE-RGLKLSGGE 679 (790)
T ss_pred ec-------------------------CCCCChHHHHHHHHHhh-----HHH---HHhcCchhhhhhhhh-cccccCCcc
Confidence 86 12222223333322221 223 467799999999997 333389999
Q ss_pred hhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecC
Q 037155 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGP 445 (1403)
Q Consensus 366 kqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~ 445 (1403)
||||+|||++++.|.+++|||.||+||..+.++|..+|.+++. ++|.|+.-|.- ++.-.+|.|+++++|+|++.|.
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ILvi~~G~IvErG~ 755 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADLILVISNGRIVERGR 755 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccEEEEEeCCeEeecCc
Confidence 9999999999999999999999999999999999999999986 56666665544 4677899999999999999999
Q ss_pred hhhHHH
Q 037155 446 RDNVLE 451 (1403)
Q Consensus 446 ~~~~~~ 451 (1403)
++|++.
T Consensus 756 HeeLl~ 761 (790)
T KOG0056|consen 756 HEELLK 761 (790)
T ss_pred HHHHHh
Confidence 999874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=333.34 Aligned_cols=205 Identities=38% Similarity=0.668 Sum_probs=171.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC-ceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+......++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 5799999999999999999999999999999999997541 124799999998775545667899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHH-HHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDE-VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
||+.+..................+++ .++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998765433222122222334555 899999987766653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|+.++..+.+.|+++.++|+|||+++|++..++.+.||++++|++ |++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999877899999999984468899999999985 7888764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=336.83 Aligned_cols=200 Identities=27% Similarity=0.343 Sum_probs=171.9
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------hhcceeeEeecCCCCCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~~ 972 (1403)
.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 699999999999999999999999999999999998653 479999999875421 235679999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+|++||+.+....+. .......+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++++|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654332 223344556789999999987777653 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999765 899999999986 57788999999985 899988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=337.06 Aligned_cols=207 Identities=26% Similarity=0.379 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++....
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP---------------------DSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEccccChhh
Confidence 4699999999999999999999999999999999999865 5899999998775432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++||+|++.+++.+||+||+.++.+.... ..+. + ....++
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~---------~~~~----------~--------------~~~~~~ 118 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR---------LSEE----------E--------------IREIVL 118 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC---------CCHH----------H--------------HHHHHH
Confidence 246799999999999999999999886321100 0000 0 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++
T Consensus 119 ~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v 193 (235)
T cd03261 119 EKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV 193 (235)
T ss_pred HHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 678899998888887765 999999999999999999999999999999999999999999999876457788887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|++. ++.+++|+|++|++|++++.|+++++.
T Consensus 194 sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 194 THDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred ecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 76554 788899999999999999999987753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=337.18 Aligned_cols=202 Identities=23% Similarity=0.369 Sum_probs=172.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 972 (1403)
+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 5699999999999999999999999999999999997653 47999999987542 2345679999999988899
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+||+||+.+...... .....+..+.+.++++.+||.+..+..+ ..||||||||++||++|+.+|++++|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987642111 1223344556789999999987777653 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 999999999999999999877999999999986 57788999999985 899998875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=354.34 Aligned_cols=210 Identities=29% Similarity=0.450 Sum_probs=176.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++ .+|+|.++|+++....+ +
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ---------------------TSGHIRFHGTDVSRLHARD 73 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998765433 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++||+|++.++|++||+||+.|+.+....... .++ .+ ....++.+++.
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~------~~~----------~~--------------~~~~~~~~l~~ 123 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRER------PNA----------AA--------------IKAKVTQLLEM 123 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccC------CCH----------HH--------------HHHHHHHHHHH
Confidence 6799999999999999999999997543110000 000 00 11235678899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 124 ~~L~~~~~~~~~~-----LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd-~ 197 (353)
T PRK10851 124 VQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD-Q 197 (353)
T ss_pred cCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-H
Confidence 9999888887765 999999999999999999999999999999999999999999999987667887776654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|++++.|+++++.
T Consensus 198 ~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 198 EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5889999999999999999999999874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=333.32 Aligned_cols=200 Identities=26% Similarity=0.423 Sum_probs=171.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCCH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 5699999999999999999999999999999999997653 47999999987542 2345679999999998889999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.+....+. ....+..+.++++++.++|.+..++.+ ..||+|||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654432 222333456789999999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+.+.|+++++ ++|||+++|+++ .+.+.||++++|++ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999876 699999999986 56778999999985 788888864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=338.75 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=171.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----------hhhcceeeEeecC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----------ETFARVSGYCEQT 966 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 966 (1403)
+.+|+||||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 4699999999999999999999999999999999997653 47999999986532 2245679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
+.+++.+|+.||+.+...... ....+...+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEE
Confidence 988999999999987543211 1223344556889999999987766653 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999877999999999986 57788999999985 789888874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=350.00 Aligned_cols=206 Identities=28% Similarity=0.416 Sum_probs=175.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+++|+|+|+.|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.... .
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 64 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP---------------------TSGTARVAGYDVVREPRKV 64 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEcccCHHHH
Confidence 4699999999999999999999999999999999999865 5899999998765421 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.|.++..+... . + ....++.+++
T Consensus 65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~ 110 (302)
T TIGR01188 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPK----------D----------E--------------AEERAEELLE 110 (302)
T ss_pred HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHH
Confidence 4579999999999999999999998654432110 0 0 0113466889
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|.|+|++.|+.
T Consensus 111 ~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~ 184 (302)
T TIGR01188 111 LFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM 184 (302)
T ss_pred HcCChhHhCCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH
Confidence 99999888888865 999999999999999999999999999999999999999999999875 478888877655
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.++.++||+|++|++|++++.|+.+++.+
T Consensus 185 -~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 185 -EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred -HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 48889999999999999999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=331.26 Aligned_cols=207 Identities=27% Similarity=0.382 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC----CC
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN----EF 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~----~~ 259 (1403)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.+.| .+|+|.++|.+.. ..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p---------------------~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP---------------------TSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC---------------------CCCEEEECCeeccchhhHH
Confidence 5799999999999999999999999999999999999965 5899999998765 23
Q ss_pred CccceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 VPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.+|||+|++ ..+-.-||.|.++|+.+..+.... + ...+++.
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~--------------------e--------------~~~rv~~ 121 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE--------------------E--------------IEERVAE 121 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHH--------------------H--------------HHHHHHH
Confidence 3468899999997 344556999999999877654210 1 1235678
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||.+..+..+-+ |||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..+.|+|++.
T Consensus 122 ~l~~vgl~~~~~r~p~~-----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t 196 (235)
T COG1122 122 ALELVGLEELLDRPPFN-----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHcCchhhccCCccc-----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 89999999999888765 9999999999999999999999999999999999999999999999886677888776
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
| ....+.+++|++++|++|+++++|+++++.+
T Consensus 197 H-d~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 197 H-DLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred C-cHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 5 5568889999999999999999999877653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.71 Aligned_cols=200 Identities=27% Similarity=0.386 Sum_probs=168.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhh------h-cceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET------F-ARVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~------~-~~~~gyv~Q~~~~~ 970 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... . ++.++|++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 4699999999999999999999999999999999997653 4799999998754211 2 25699999999888
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+.+|++||+.+....+ ....++.++.++++++.+||.+..++.+ ..||||||||++||++|+.+|+||||||
T Consensus 100 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998865432 1223344456889999999987776653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.+|++++|. +|++++.+++
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~-~G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMR-DGRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEE-CCEEEEEecc
Confidence 9999999999999999999975 5899999999986 34 4568999997 4899988875
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=319.21 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=174.7
Q ss_pred cccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCC
Q 037155 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDI 968 (1403)
Q Consensus 893 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~ 968 (1403)
..|++.++|++||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++.. ...++-++||||...
T Consensus 11 ~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred ecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 346678899999999999999999999999999999999998763 37999999998754 334567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE-LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.||.+||+|||..++..+.. ++.....++++.+.+- |.+.+++..| .|||||||-++|||||+.+|++|+
T Consensus 89 iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred chhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988765432 1111122677777774 6666777655 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||||.||-|.-..+|.+.|+++.++ |.||+++-++.. ...+.+|+.++|.+ |++++.|+..
T Consensus 160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 99999999999999999999999866 779999988865 46789999999985 8999999854
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=343.76 Aligned_cols=201 Identities=23% Similarity=0.358 Sum_probs=170.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCC-CCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDI-HSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 971 (1403)
+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+|||+|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 4699999999999999999999999999999999998653 47999999987643 234578999999863 334
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC--CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK--PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
..||+|++.|..... +...++..+.++++++.+||. +..++. +..||||||||++||+||+.+|++||||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865432 234455556789999999996 555654 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999765 899999999986 56788999999985 899998875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=331.40 Aligned_cols=193 Identities=28% Similarity=0.387 Sum_probs=165.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 4699999999999999999999999999999999997653 47999999987542 124567999999999889
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+|+.||+.+....+. ......++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 93 DRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999988754331 222334456889999999987666653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 9999999999999999999877999999999986 577789999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.09 Aligned_cols=194 Identities=26% Similarity=0.375 Sum_probs=166.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 4699999999999999999999999999999999997653 47999999986532 124567999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+|++||+.+....+. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988754332 223344456789999999987777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999986 56678999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=379.23 Aligned_cols=209 Identities=28% Similarity=0.459 Sum_probs=176.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
++++|+|+|++++|||.+||+||||||||||+++|+|++++ .+|+|.+||+++++...
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---------------------~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---------------------TSGEILIDGIDIRDISLD 399 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---------------------CCCeEEECCEehhhcCHH
Confidence 45799999999999999999999999999999999999865 58999999999877654
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+|. -||+|||.++. ++...++..+++..++ ..|.+
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-------------------------~~at~eei~~a~k~a~-----~~d~I 448 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGR-------------------------PDATDEEIEEALKLAN-----AHEFI 448 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCC-------------------------CCCCHHHHHHHHHHhC-----hHHHH
Confidence 688999999999997 59999999862 2222234444544332 12333
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
.+ |++++||.|| +.+..||||||||++||||++++|+||+||||||+||+.+...|.+.++++.+ ++|+++..|
T Consensus 449 ~~---lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaH 522 (567)
T COG1132 449 AN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAH 522 (567)
T ss_pred Hh---Ccccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEec
Confidence 33 6889999999 56778999999999999999999999999999999999999999999997764 578888777
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.+ .+...+|+|++|++|++++.|++++++.
T Consensus 523 Rl--sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 523 RL--STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cH--hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 66 4556699999999999999999999975
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.98 Aligned_cols=201 Identities=27% Similarity=0.404 Sum_probs=171.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+|++|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4699999999999999999999999999999999997653 47999999987532 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP--LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
|+||+.+...++. ...+...+.+.++++.+++.+ ..++. ++.||||||||++||++|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654431 223344556889999999985 55554 3479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999764 899999999986 57788999999985 789888874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=338.98 Aligned_cols=205 Identities=25% Similarity=0.307 Sum_probs=170.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 970 (1403)
++.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.+||++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 35699999999999999999999999999999999997653 47999999987532 12456799999999999
Q ss_pred CCCCHHHHHHHHHhhh-----CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 971 PHVTLYESLLYSAWLR-----LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+.+||+||+.+..... ...........+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999997643110 0001111233456788999999987766653 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAP 230 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCH
Confidence 9999999999999999999999998754 899999999986 56788999999985 788888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=333.15 Aligned_cols=200 Identities=31% Similarity=0.457 Sum_probs=167.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h-hcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T-FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 35699999999999999999999999999999999998653 479999999875321 1 24569999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV-ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+|++||+.+...... ..+..+.+.++++.+ ++.+..++. +..||||||||++|||+|+.+|++|+||||
T Consensus 90 ~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 90 LTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred CcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999988754321 122234466778887 466655654 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999999999877899999999986 57788999999985 789888874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=306.37 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=172.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV- 260 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~- 260 (1403)
...++|+|||+.|++||++-|+||||||||||||+|.+...| .+|+|.+||++++...
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---------------------t~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---------------------TRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---------------------CCceEEECCeecccccc
Confidence 446799999999999999999999999999999999998865 6899999999886543
Q ss_pred -----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 -----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 -----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.+|.||+|+|+.-+++..||.||++|+.+..|...+ +.+.+
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~----------------------------------~i~~r 117 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR----------------------------------EIRRR 117 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHH----------------------------------HHHHH
Confidence 268999999999999999999999999877664211 12235
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+..+|+..||.+.++...-. |||||||||+||||++.+|++|+-||||-.||+.++.+|++.+.++.+ .|.||+
T Consensus 118 V~~~L~~VgL~~k~~~lP~~-----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl 191 (223)
T COG2884 118 VSEVLDLVGLKHKARALPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVL 191 (223)
T ss_pred HHHHHHHhccchhhhcCccc-----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEE
Confidence 66789999999999877654 999999999999999999999999999999999999999999999865 688888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecC
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGP 445 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~ 445 (1403)
++.| ...-+-..--+++.|++|+++....
T Consensus 192 ~ATH-d~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 192 MATH-DLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred EEec-cHHHHHhccCcEEEEeCCEEEeccc
Confidence 8875 3334445667899999999986543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=337.02 Aligned_cols=200 Identities=27% Similarity=0.369 Sum_probs=170.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
+.+|+|+|++|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+.+||++|++.+++.+||.|
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 5699999999999999999999999999999999997653 47999999987642 2345899999998889999999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
|+.+....+. ....+..+.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++|||||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 90 NVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred HHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 9987654321 223334456889999999987766653 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCC
Q 037155 1058 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPL 1110 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~ 1110 (1403)
.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|++ +|+++..++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999854 5899999999986 57788999999984 5899888764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=355.17 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p---------------------~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI---------------------TSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CceEEEECCEECCCCCHhH
Confidence 4699999999999999999999999999999999999865 58999999998765433 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++||+|++.+++.+||+||+.|+.+..+.. +. + ....++.+++.
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~ 120 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAK----------KE----------E--------------INQRVNQVAEV 120 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 67999999999999999999999875432210 00 0 01235668899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|++
T Consensus 121 lgL~~~~~~~~~~-----LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~- 194 (369)
T PRK11000 121 LQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ- 194 (369)
T ss_pred cCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-
Confidence 9999888888765 9999999999999999999999999999999999999999999998775678888877655
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 195 VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4888999999999999999999998874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=319.04 Aligned_cols=204 Identities=26% Similarity=0.328 Sum_probs=172.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---- 260 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---- 260 (1403)
++|+|||+++.+||..+|+|+||||||||.++|+|+.+| .+|+|+++|.+.....
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p---------------------~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---------------------SSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC---------------------CCceEEECCcccCccccchh
Confidence 699999999999999999999999999999999999865 5899999998765532
Q ss_pred ccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 ~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..+.+-+|+||+ .+.|..||++.|.-+.+..|... . +.++.+
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~----------~--------------------------~~~i~~ 123 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK----------S--------------------------QQRIAE 123 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccH----------H--------------------------HHHHHH
Confidence 357899999997 68899999999976544332211 0 112456
Q ss_pred HHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 339 VLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 339 il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
+++.+||+.. ++... ..|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+..+.|.++.
T Consensus 124 ~L~~VgL~~~~l~R~P-----~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~I 198 (252)
T COG1124 124 LLDQVGLPPSFLDRRP-----HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFI 198 (252)
T ss_pred HHHHcCCCHHHHhcCc-----hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 8899999874 44444 44999999999999999999999999999999999999999999999998888787776
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. |...-+..+||||+||++|++++.++.+++..
T Consensus 199 s-Hdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 199 S-HDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred e-CcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 5 55668889999999999999999999998863
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=338.99 Aligned_cols=201 Identities=27% Similarity=0.365 Sum_probs=171.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 973 (1403)
..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++. .++..
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4599999999999999999999999999999999997653 47999999987643 234567999999863 44568
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||.||+.|..... .....+..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 96 TVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred cHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999998864322 2333444456889999999988777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 222 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK 222 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999877999999999986 46788999999985 789998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=330.70 Aligned_cols=200 Identities=29% Similarity=0.445 Sum_probs=164.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCC--CCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS--PHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lT 974 (1403)
++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. +.+|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 35699999999999999999999999999999999997653 4799999998653 3456799999998663 3489
Q ss_pred HHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 975 LYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 975 v~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
|+||+.+....... .....+...+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999875432110 00111233456789999999987766654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999877999999999986 57788999999974 5 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=329.57 Aligned_cols=193 Identities=25% Similarity=0.386 Sum_probs=162.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 973 (1403)
+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 5699999999999999999999999999999999997653 47999999986532 334567999999974 36789
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
|++||+.+..... ........+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 1222333456788999999987666653 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 567789999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=342.45 Aligned_cols=218 Identities=22% Similarity=0.314 Sum_probs=177.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++.. ......+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 5667777654210 00113599999999999999999999999999999999997654 3699999886531
Q ss_pred ---------------------------hhhhcceeeEeecCC-CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH
Q 037155 953 ---------------------------QETFARVSGYCEQTD-IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM 1004 (1403)
Q Consensus 953 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l 1004 (1403)
....++.+|||+|++ ..+...||+|++.|..... +.+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123457799999985 3344579999999875432 234445556789999
Q ss_pred HHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 037155 1005 ELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1005 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1083 (1403)
+.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 34799999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1084 PSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1084 ~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++ ++.+.||++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 57789999999975 799999885
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=339.40 Aligned_cols=203 Identities=20% Similarity=0.308 Sum_probs=171.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------hhcceeeEeecCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------TFARVSGYCEQTDIHS 970 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~ 970 (1403)
++.+|+||||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+..++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35699999999999999999999999999999999998653 479999999875321 2345799999999889
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+.+||.||+.+...... ..+.....+.+.++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 97 ~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDE 169 (269)
T PRK11831 97 TDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDE 169 (269)
T ss_pred CCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999987643221 1223334456788999999988777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 228 (269)
T PRK11831 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSA 228 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999765 899999999986 57788999999985 899998875
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=363.65 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=177.8
Q ss_pred cccCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE
Q 037155 867 PFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 946 (1403)
Q Consensus 867 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i 946 (1403)
+...-.++|+|++|.+.. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|..++ .+|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEE
Confidence 334557899999988742 224699999999999999999999999999999999998764 4799999
Q ss_pred cCccCC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC-------CCccccc
Q 037155 947 SGYPKK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-------KPLRDAL 1016 (1403)
Q Consensus 947 ~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~ 1016 (1403)
||++.+ ...+|+.+|||+|++.++ +-|++||+.++. .+.+.++ +.++++..|. ..-.|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccc
Confidence 999864 466889999999998876 469999998763 2222222 3333433333 2335677
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEE
Q 037155 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1096 (1403)
Q Consensus 1017 vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ 1096 (1403)
+|..|. +||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.++.. |+|+|+++|+++ ..+.||+++
T Consensus 603 v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEE
Confidence 776544 6999999999999999999999999999999999999999999999864 899999999985 678999999
Q ss_pred EEecCcEEEEecCC
Q 037155 1097 LMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1097 ll~~gG~~~~~g~~ 1110 (1403)
+|+ +|+++..|+.
T Consensus 679 Vl~-~Gkiv~~gs~ 691 (709)
T COG2274 679 VLD-QGKIVEQGSH 691 (709)
T ss_pred Ecc-CCceeccCCH
Confidence 998 5899999985
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.43 Aligned_cols=195 Identities=26% Similarity=0.372 Sum_probs=166.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 972 (1403)
+.+|+++||++++|+++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 5699999999999999999999999999999999997653 47999999987531 2345779999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+|+.||+.+...... ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999988643111 1223344456788999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999877999999999986 57788999999985 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=340.92 Aligned_cols=218 Identities=24% Similarity=0.307 Sum_probs=176.9
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++++++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56677766542100 0124599999999999999999999999999999999997653 4799999998763
Q ss_pred h-------hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 037155 953 Q-------ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVN 1023 (1403)
Q Consensus 953 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1023 (1403)
. ...++.+|||+|++. .+...||+||+.|+.... ..+.++..+.++++++.++|. +..++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999862 233579999999875432 223444456689999999996 556654 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|+ +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999764 899999999986 5778899999998 58
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.59 Aligned_cols=197 Identities=34% Similarity=0.511 Sum_probs=167.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCCH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 9999999999999999999997653 47999999987542 2345679999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
.||+.+....+. ....+..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988655432 222333456789999999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999976 599999999986 46678999999985 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=311.20 Aligned_cols=210 Identities=23% Similarity=0.372 Sum_probs=179.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
+++++++|||+.+++||+++++|||||||||.+.++.|+.++ .+|+|.++|.+++....
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~---------------------d~G~i~ld~~diT~lPm 73 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP---------------------DSGKILLDDEDITKLPM 73 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec---------------------CCceEEECCcccccCCh
Confidence 456799999999999999999999999999999999999875 58999999999988764
Q ss_pred ----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 262 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 262 ----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
+.-+||++|++..|..|||+|||.-..+.+... .+. .+.+...+
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d---------------------~~~-----------~~~~~~l~ 121 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD---------------------LKK-----------AERKEELD 121 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc---------------------hhH-----------HHHHHHHH
Confidence 346999999999999999999997654332100 000 01123467
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+|+.++|.|+.+..-.. ||||||+|+.|||||+.+|+.++||||++|+||.+..+|.+.++.+.+ .|..++++
T Consensus 122 ~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLIT 195 (243)
T COG1137 122 ALLEEFHITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLIT 195 (243)
T ss_pred HHHHHhchHHHhcCcccc-----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEc
Confidence 899999999999987655 999999999999999999999999999999999999999999999976 47777776
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
- |...|+.+.+||.+++++|++..+|+++++.+
T Consensus 196 D-HNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 196 D-HNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred c-ccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 4 56679999999999999999999999998863
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.67 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=172.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 35699999999999999999999999999999999997653 47999999987532 1234679999999988899
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+||+||+.+....+. ....++....++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+|||||
T Consensus 93 ~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 93 LSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred CcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987643321 1223344556889999999987666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.+++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 221 (241)
T PRK10895 166 AGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTP 221 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCH
Confidence 999999999999999999877999999999986 57889999999985 789888875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=342.47 Aligned_cols=240 Identities=25% Similarity=0.415 Sum_probs=201.7
Q ss_pred HHhhhhcCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEE
Q 037155 123 RHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLL 202 (1403)
Q Consensus 123 ~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l 202 (1403)
..+-+++.++.|+..+..|++++- + ...++++|+|+||.+.+|+-++|
T Consensus 320 p~~~~~m~LP~P~g~L~Ve~l~~~-------------------------------P-Pg~~~pil~~isF~l~~G~~lgI 367 (580)
T COG4618 320 PAAAERMPLPAPQGALSVERLTAA-------------------------------P-PGQKKPILKGISFALQAGEALGI 367 (580)
T ss_pred ccccCCCCCCCCCceeeEeeeeec-------------------------------C-CCCCCcceecceeEecCCceEEE
Confidence 334456778888999999998871 1 12347899999999999999999
Q ss_pred EcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---cceEEEeccCCCCCCCCC
Q 037155 203 LGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 279 (1403)
Q Consensus 203 lGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 279 (1403)
+||||||||||.++|.|..+| .+|.|.+||.+++..++ -+.|||.||+-.+|+. |
T Consensus 368 IGPSgSGKSTLaR~lvG~w~p---------------------~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-T 425 (580)
T COG4618 368 IGPSGSGKSTLARLLVGIWPP---------------------TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-T 425 (580)
T ss_pred ECCCCccHHHHHHHHHccccc---------------------CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-c
Confidence 999999999999999998754 68999999999887665 3889999999999976 9
Q ss_pred HHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCC
Q 037155 280 VRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359 (1403)
Q Consensus 280 VrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 359 (1403)
|.|||. |+ .++.|.++..+|+..++ ..|.|+ .|++++||.||+ .+.
T Consensus 426 IaeNIa---Rf----------------------~~~~d~~kIieAA~lAg-----vHelIl---~lP~GYdT~iG~-~G~ 471 (580)
T COG4618 426 IAENIA---RF----------------------GEEADPEKVIEAARLAG-----VHELIL---RLPQGYDTRIGE-GGA 471 (580)
T ss_pred HHHHHH---hc----------------------cccCCHHHHHHHHHHcC-----hHHHHH---hCcCCccCccCC-CCC
Confidence 999993 21 12344556667766655 334444 499999999995 578
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCe
Q 037155 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQ 439 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~ 439 (1403)
+||||||||+++||||+++|.+++||||-|+||+.....+.+.+.+... .|.|+|++.|.| .+...+|+|++|++|+
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~ 548 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGR 548 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCCh
Confidence 8999999999999999999999999999999999999999999998755 688888888766 4889999999999999
Q ss_pred EEEecChhhHHHHH
Q 037155 440 IVYHGPRDNVLEFF 453 (1403)
Q Consensus 440 iv~~G~~~~~~~~F 453 (1403)
+-.+|+++|++...
T Consensus 549 ~~~FG~r~eVLa~~ 562 (580)
T COG4618 549 IAAFGPREEVLAKV 562 (580)
T ss_pred HHhcCCHHHHHHHh
Confidence 99999999998654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=315.48 Aligned_cols=206 Identities=27% Similarity=0.384 Sum_probs=172.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|||+.+++||+++|+|||||||||||++|+|..++ .+|+|.++|++++...+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---------------------~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---------------------RSGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCeeEEECCeecCCCCHH
Confidence 36899999999999999999999999999999999999864 58999999999988765
Q ss_pred ---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 262 ---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 262 ---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
++-++||||....||.|||+|||..++..+... +. . ....|.
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~------------~~-----~------------------~~~~e~ 118 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK------------EA-----Q------------------ERDLEE 118 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc------------cc-----c------------------cccHHH
Confidence 367999999999999999999998864332100 00 0 001233
Q ss_pred HHHHcC-CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 339 VLKLLG-LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 339 il~~lg-L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
+.+.|= |.+..++.-|+ |||||||-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+..+.||+ .
T Consensus 119 v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIl-L 192 (237)
T COG0410 119 VYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL-L 192 (237)
T ss_pred HHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEE-E
Confidence 444442 55566677766 9999999999999999999999999999999999999999999999876564554 4
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
..|......+.+|+.++|.+|+|++.|+.+++.
T Consensus 193 VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 193 VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 679999999999999999999999999999885
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=381.60 Aligned_cols=205 Identities=26% Similarity=0.405 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++++|||.++|+||||||||||+|+|+|+++| .+|+|.+||+++.+..+
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p---------------------~~G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---------------------ESGSVFYDGQDLAGLDVQA 524 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCEEEECCEEcCcCCHHH
Confidence 4699999999999999999999999999999999999865 58999999999887654
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++.. .+.++..+++...+.+ +.+
T Consensus 525 lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l~-----~~i- 571 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMSG-SIFENIAGGAP--------------------------LTLDEAWEAARMAGLA-----EDI- 571 (686)
T ss_pred HHhccEEEccCCccCcc-cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCcH-----HHH-
Confidence 5789999999999975 99999988521 1112223333322211 111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
..|+++.||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++ ++|+|++.|+
T Consensus 572 --~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr 644 (686)
T TIGR03797 572 --RAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHR 644 (686)
T ss_pred --HhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecC
Confidence 2378899999995 57789999999999999999999999999999999999999999999875 4788888887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ ++.+.+|+|++|++|+++++|+++++++
T Consensus 645 ~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 645 L--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred h--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 6 5778899999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=339.22 Aligned_cols=199 Identities=26% Similarity=0.374 Sum_probs=169.6
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCC--CC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTD--IH 969 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~--~~ 969 (1403)
.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+|||+|++ .+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 599999999999999999999999999999999998653 47999999987531 23567799999986 34
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+ ..||.|++.|..... ..+..+.++.+.++++.++|. +..++. +..||||||||++||++|+.+|++|+|
T Consensus 98 ~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illL 168 (288)
T PRK13643 98 F-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVL 168 (288)
T ss_pred c-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4 469999999875432 233445566789999999996 455554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~ 228 (288)
T PRK13643 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTP 228 (288)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999877999999999986 57788999999985 899999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=335.03 Aligned_cols=202 Identities=21% Similarity=0.300 Sum_probs=170.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----------------hhhcceee
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----------------ETFARVSG 961 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~~g 961 (1403)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 5699999999999999999999999999999999998653 47999999976531 23456799
Q ss_pred EeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-cccccCCCCCCCCHHHHHHHHHHHHHh
Q 037155 962 YCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-DALVGLPGVNGLSTEQRKRLTIAVELV 1040 (1403)
Q Consensus 962 yv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~IA~aL~ 1040 (1403)
|++|++.+++.+|++||+.+...... .....+..+.+.++++.+|+.+.. +.. +..||||||||++|||+|+
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~laral~ 168 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALA 168 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHh
Confidence 99999999999999999987542111 122344456688999999997653 443 3479999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999877999999999986 56778999999985 789888874
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=330.75 Aligned_cols=200 Identities=25% Similarity=0.314 Sum_probs=163.5
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCC--CCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTD--IHS 970 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~ 970 (1403)
.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++ .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 699999999999999999999999999999999997653 47999999987542 23456799999998 466
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
+.+||+||+.+........ .........++++++.+++. +..+..+ ..||||||||++|||+|+.+|++|+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 7899999998765433211 11111122235788999985 4555543 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999865 899999999986 56678999999985 7877654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=330.77 Aligned_cols=201 Identities=29% Similarity=0.445 Sum_probs=169.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ....+.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 35699999999999999999999999999999999998653 47999999986532 122357999999998888999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
++||+.+....+ ....++..+.++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 91 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 162 (236)
T TIGR03864 91 VRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVG 162 (236)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 999998765432 1223334456788999999987777654 37999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |++++.|+.
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCCH
Confidence 999999999999999975 5899999999986 35 45999999985 788888764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=328.47 Aligned_cols=196 Identities=25% Similarity=0.320 Sum_probs=166.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---h---hhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E---TFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 4699999999999999999999999999999999997653 47999999986532 1 24567999999998889
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+|++||+.+....+ ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999998865443 1223344456788999999987766653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|++ |+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999877899999999986 57778999999985 6653
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=347.69 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=175.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+.+|+|||++|++|++++|+||||||||||+++|+|.++| .+|+|.++|+++.... .
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p---------------------~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP---------------------DAGKITVLGVPVPARARLA 112 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---------------------CceEEEECCEECCcchHHH
Confidence 4699999999999999999999999999999999999865 5899999999875432 3
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.+||++|++.+++.+||+||+.|.++..+.. .. + ....++.+++
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~ll~ 158 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS----------TR----------E--------------IEAVIPSLLE 158 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHH
Confidence 567999999999999999999998754432210 00 0 0112456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|++++.|..
T Consensus 159 ~~~L~~~~~~~~~~-----LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l 232 (340)
T PRK13536 159 FARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM 232 (340)
T ss_pred HcCCchhhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH
Confidence 99999999998876 999999999999999999999999999999999999999999999976 478888876654
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.++.++||+|++|++|+++++|+.+++.+
T Consensus 233 -~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 233 -EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred -HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 58889999999999999999999998864
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=306.64 Aligned_cols=225 Identities=25% Similarity=0.380 Sum_probs=185.3
Q ss_pred EEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh
Q 037155 874 TFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953 (1403)
Q Consensus 874 ~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 953 (1403)
...|++|++ .++++|++||++++|||++||+|||||||||||++|+|...+ .+|++.+||.+.+.
T Consensus 3 ~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~~ 67 (259)
T COG4559 3 RAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLNS 67 (259)
T ss_pred eeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChhh
Confidence 456777765 347799999999999999999999999999999999997664 37999999998754
Q ss_pred ---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 037155 954 ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 954 ---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1030 (1403)
...++..+.+||+..+....||+|.+.++..-... .....+..+.++++|+..++.+++.+.. ..||||||
T Consensus 68 ~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEq 141 (259)
T COG4559 68 WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQ 141 (259)
T ss_pred CCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHH
Confidence 34567789999999888889999999998643221 1122234455789999999999887653 47999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1031 KRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1031 qRl~IA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
|||.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++-||++. ...+||++++|+ +|++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Grv 219 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGRV 219 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCeE
Confidence 99999999975 456899999999999999999999999999999999999999985 678999999998 5899
Q ss_pred EEecCCCc--chhHHHHHH
Q 037155 1105 IYAGPLGR--ESHKLIEYF 1121 (1403)
Q Consensus 1105 ~~~g~~~~--~~~~~~~~f 1121 (1403)
+..|++.+ ..+.+...|
T Consensus 220 ~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 220 IASGSPQDVLTDETLERVY 238 (259)
T ss_pred eecCCHHHhcCHHHHHHHh
Confidence 99998653 223344444
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=338.74 Aligned_cols=218 Identities=26% Similarity=0.397 Sum_probs=175.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|.++....
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---------------------TSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CccEEEECCEECCCcCccH
Confidence 4699999999999999999999999999999999999865 5899999999876432
Q ss_pred --ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 --PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++||+|++. .+..+||+||+.|+....+.. +. + ....++
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~ 124 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS----------EE----------E--------------IENRVK 124 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCC----------HH----------H--------------HHHHHH
Confidence 2467999999863 334579999998863321110 00 0 112346
Q ss_pred HHHHHcCCc--ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 338 YVLKLLGLD--ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 338 ~il~~lgL~--~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
.+++.+||+ +..|+.+.+ ||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|
T Consensus 125 ~~l~~~gL~~~~~~~~~~~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi 199 (287)
T PRK13637 125 RAMNIVGLDYEDYKDKSPFE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTII 199 (287)
T ss_pred HHHHHcCCCchhhccCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 688999997 566776654 9999999999999999999999999999999999999999999999775578888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH---HHHHcCCCCCC
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQMGFKCPE 462 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~---~F~~~G~~cp~ 462 (1403)
++.|+. .++..++|+|++|++|++++.|+.+++.+ .+...|+.+|.
T Consensus 200 ~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 200 LVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 877654 47788999999999999999999988743 23344555443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=338.65 Aligned_cols=200 Identities=21% Similarity=0.335 Sum_probs=169.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCC--C
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTD--I 968 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~--~ 968 (1403)
+.+|+|||++|++||++||+||||||||||+++|+|...+ ..|+|.++|.++.. ...++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 4599999999999999999999999999999999997653 47999999987632 23567899999986 3
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+++ .||.||+.|..... ..+..+..+.+.++++.+||. +..++. +..||||||||++||++|+.+|+||+
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999999865332 233445556788999999996 566654 44799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 230 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSP 230 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999975 4899999999986 57788999999985 799998874
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=328.12 Aligned_cols=198 Identities=24% Similarity=0.370 Sum_probs=170.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... .+.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 35699999999999999999999999999999999997653 4799999998754322 25799999999888999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+....+. .. ...+.++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654332 11 124678999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 99999999999999877999999999986 57788999999985 7999998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=337.25 Aligned_cols=215 Identities=27% Similarity=0.397 Sum_probs=178.5
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
-+.++|+++.+. +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 366777765541 134699999999999999999999999999999999997653 479999999876
Q ss_pred C-----hhhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 037155 952 K-----QETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025 (1403)
Q Consensus 952 ~-----~~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1025 (1403)
. ...+++.+||++|++. .+...||+||+.+..... +.+..+..+.++++++.++|.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 3 1235577999999874 234689999998864322 2233444566899999999988777654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
|||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999986 46678999999985 799
Q ss_pred EEecCC
Q 037155 1105 IYAGPL 1110 (1403)
Q Consensus 1105 ~~~g~~ 1110 (1403)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=341.81 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=177.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++.. ....+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 47888887765310 00124599999999999999999999999999999999998653 479999999765
Q ss_pred Ch-------------------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC
Q 037155 952 KQ-------------------ETFARVSGYCEQTD--IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010 (1403)
Q Consensus 952 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 1010 (1403)
.. ...++.+|||+|++ .+++ .||+||+.|..... +.+.++..+.+.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 3554 59999998864322 223344455688999999996
Q ss_pred -CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 037155 1011 -PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1089 (1403)
Q Consensus 1011 -~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1089 (1403)
+..++. +..||||||||++|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 3479999999999999999999999999999999999999999999999877999999999986 477
Q ss_pred HhcCeEEEEecCcEEEEecCC
Q 037155 1090 EAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1090 ~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+.||++++|++ |++++.|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 899999975
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=337.82 Aligned_cols=215 Identities=23% Similarity=0.321 Sum_probs=178.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++. ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 566777665421 0124599999999999999999999999999999999997653 4799999998764
Q ss_pred h---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 953 Q---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
. ...++.+||++|++. .++..||+||+.|..... +.+.++..+.++++++.++|.+..+..+ ..||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHH
Confidence 2 234567999999973 667889999999875432 2334455567899999999988777664 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..||++++|++ |+++..
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~ 221 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVEST 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999865 999999999986 35 57999999984 899988
Q ss_pred cCC
Q 037155 1108 GPL 1110 (1403)
Q Consensus 1108 g~~ 1110 (1403)
|+.
T Consensus 222 g~~ 224 (279)
T PRK13650 222 STP 224 (279)
T ss_pred CCH
Confidence 874
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=348.79 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=175.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
++++|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|.++.....
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p---------------------~~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP---------------------TSGRVLVDGQDLTALSEK 75 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCCHH
Confidence 35799999999999999999999999999999999999865 58999999998765322
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.+..+..+.. + .+ ....+
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~----------~----------~~--------------~~~~~ 121 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTP----------K----------AE--------------IKARV 121 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHH
Confidence 467999999999999999999998864332210 0 00 01134
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+
T Consensus 122 ~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiil 196 (343)
T PRK11153 122 TELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVL 196 (343)
T ss_pred HHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5678999999888887765 99999999999999999999999999999999999999999999997756788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|+.. ++.+++|+|++|++|++++.|+.+++.
T Consensus 197 vtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 197 ITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred EeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 776654 778899999999999999999988774
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=341.41 Aligned_cols=203 Identities=22% Similarity=0.265 Sum_probs=172.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCC--CC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTD--IH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~ 969 (1403)
..+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++||+|++ .+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 5699999999999999999999999999999999997653 47999999987642 12456799999997 57
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+|.+||.|++.+....... ..+.++.++.+.++++.++|. +..++. +..|||||||||+||+||+.+|++|++
T Consensus 112 ~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8899999999886543221 234455566788999999994 345554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+ |++++.|+.
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~ 246 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTY 246 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999764 899999999986 56778999999985 899999985
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=332.90 Aligned_cols=202 Identities=26% Similarity=0.340 Sum_probs=169.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.+... ...++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 46999999999999999999999999999999999976431 127999999987642 2345679999999988
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC----CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK----PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
++ .|++||+.+....+. .....+..+.++++++.++|. +..+.. +..||||||||++||++|+.+|++
T Consensus 94 ~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred CC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 88 999999988754431 112334445688999999997 445543 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999976 599999999986 57788999999985 789888874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=303.24 Aligned_cols=201 Identities=26% Similarity=0.417 Sum_probs=177.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
..+|+|||++|.+||.++++||||||||||||+++|..++ ..|+|.+||.++.... ...|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 3499999999999999999999999999999999998774 4799999999876432 23589999999999999999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
|+.|+..++ ++++.++.+.+.+.+..+||.+..++.+ -+||||||||+.|||||+.+|++|+||||++.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 4667888899999999999999887764 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCCC
Q 037155 1058 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG-GRVIYAGPLG 1111 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g-G~~~~~g~~~ 1111 (1403)
-+++.++++|-++. .+|+.++++||+.+ +..-.++++++|+.+ |+++..-|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999976 56999999999987 444577999999843 7888777653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=331.46 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=170.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC---------hhhhcceeeEeecCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK---------QETFARVSGYCEQTDI 968 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---------~~~~~~~~gyv~Q~~~ 968 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ....++.++|++|++.
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4699999999999999999999999999999999998653 4799999998642 1234567999999999
Q ss_pred CCCCCCHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 969 HSPHVTLYESLLYS-AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~-~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+++.+|+.||+.+. .... +....+..+.+.++++.+|+.+..++.+ ..||||||||++|||+|+.+|++++
T Consensus 93 ~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999753 2221 1222333456789999999987777654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 225 (242)
T PRK11124 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred EcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999877999999999986 56778999999985 899988874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=334.04 Aligned_cols=206 Identities=21% Similarity=0.285 Sum_probs=174.1
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRY-------------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 36778876654 234699999999999999999999999999999999997653 479999998764
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345679999999998899999999987521 0 11345788999999987776653 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999986 56788999999985 788887764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=328.71 Aligned_cols=205 Identities=29% Similarity=0.414 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.++.... .
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---------------------TSGRATVAGHDVVREPREV 71 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEecCcChHHH
Confidence 4699999999999999999999999999999999998854 5899999998764321 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.+..+..+.. . .+ ....++.+++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~ 117 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVP----------G----------AE--------------RRERIDELLD 117 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHH
Confidence 357999999999999999999998854322110 0 00 0113466789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++
T Consensus 118 ~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 118 FVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999888888865 9999999999999999999999999999999999999999999998765577877776654
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.++.+.+|+|++|++|++++.|+++++
T Consensus 193 -~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 193 -EEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred -HHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 478889999999999999999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.09 Aligned_cols=200 Identities=31% Similarity=0.429 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-cc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQ 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~ 262 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|.++.... .+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---------------------DSGEILIDGRDVTGVPPER 71 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCeEEEECCEEcCcCchhh
Confidence 4699999999999999999999999999999999999864 5899999998775432 24
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++.+++.+||+||+.++....+.. .. + ....++.+++.
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~ 117 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVP----------KA----------E--------------IRARVRELLEL 117 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 67999999998999999999998753221100 00 0 01124567889
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++
T Consensus 118 ~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~- 191 (213)
T cd03259 118 VGLEGLLNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ- 191 (213)
T ss_pred cCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-
Confidence 9998888887765 9999999999999999999999999999999999999999999998765577888776655
Q ss_pred hhHHhhcCEEEEEcCCeEEEec
Q 037155 423 PETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G 444 (1403)
.++.+++|+|++|++|++++.|
T Consensus 192 ~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 192 EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCEEEEEECCEEEecC
Confidence 4778899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=334.75 Aligned_cols=206 Identities=22% Similarity=0.248 Sum_probs=170.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h-hcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T-FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .+..++|++|++.+++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 35699999999999999999999999999999999997653 479999999875421 1 23358999999999999
Q ss_pred CCHHHHHHHHHhhhCC----------C--CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh
Q 037155 973 VTLYESLLYSAWLRLS----------S--DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV 1040 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~ 1040 (1403)
+||+||+.+....... . .....+..+.++++++.+|+.+..+..+ ..||||||||++||++|+
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~ 169 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMV 169 (255)
T ss_pred CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHh
Confidence 9999999986431110 0 0011223345788899999987777654 479999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPE 239 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHH
Confidence 999999999999999999999999999999875 899999999986 57788999999985 7899888753
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=338.90 Aligned_cols=201 Identities=24% Similarity=0.314 Sum_probs=169.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCCC-C
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTDI-H 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~-~ 969 (1403)
+.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 4599999999999999999999999999999999997663 47999999987532 234567999999863 2
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+..+||.||+.+..... ....++..+.++++++.++|. +..++.+ ..||||||||++||++|+.+|++|+|
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33589999998765432 123344456688999999997 5666654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 229 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASP 229 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999877999999999986 57789999999985 889988874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=326.66 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=163.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hh---hc-ceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ET---FA-RVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~---~~-~~~gyv~Q~~~~~ 970 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .. ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 4699999999999999999999999999999999997653 47999999987532 11 22 5699999999888
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+.+|++||+.+....+. ....+..+.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654331 122333456788999999987777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 99999999999999999999764 899999999986 34 55899999985 6654
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=338.68 Aligned_cols=218 Identities=22% Similarity=0.344 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
.++|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++...
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP---------------------TSGTVTIGERVITAGKKNK 78 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCcEEEECCEECccccccc
Confidence 4699999999999999999999999999999999999865 589999999987431
Q ss_pred ---CccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 260 ---VPQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
..++.++||+|++. .+...||+||+.|+.+..+.. .. + ....
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~----------~~----------~--------------~~~~ 124 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVS----------EE----------D--------------AKQK 124 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCC----------HH----------H--------------HHHH
Confidence 12357999999862 333579999998864322110 00 0 0113
Q ss_pred HHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
++.+++.+||+ +..++.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tv 199 (290)
T PRK13634 125 AREMIELVGLPEELLARSPFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTT 199 (290)
T ss_pred HHHHHHHCCCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 46688999997 567777755 999999999999999999999999999999999999999999999977567888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH---HHHHcCCCCCC
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQMGFKCPE 462 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~---~F~~~G~~cp~ 462 (1403)
|++.|+.. ++.+++|+|++|++|++++.|+++++.+ .+...|..+|.
T Consensus 200 iiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 200 VLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 88776554 7888999999999999999999887642 23344544443
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=331.19 Aligned_cols=214 Identities=26% Similarity=0.325 Sum_probs=174.1
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+.++|++..+ +++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 46677776533 234699999999999999999999999999999999997542 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1019 (1403)
.+... ..+++.+||++|++.+++ +|++||+.+....+ ....++..+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988887 89999999875432 1223334456788999998842 33433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|+++++ |+|||++||+++ ++.+.||++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 899999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899998874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=330.91 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|.++..... +
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---------------------DSGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCCccc
Confidence 4699999999999999999999999999999999999854 58999999987654322 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++.+++.+||+||+.++....+...+ .+.+ . ....++.+++.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~-----------------~~~~--~-----------~~~~~~~~l~~ 123 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSER-----------------PPEA--E-----------IRAKVHELLKL 123 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhcccccc-----------------CCHH--H-----------HHHHHHHHHHH
Confidence 5799999999999999999999886432211000 0000 0 01124567889
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++.
T Consensus 124 ~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 124 VQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred cCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9998877877765 99999999999999999999999999999999999999999999987655788888877654
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++...+|+|++|++|++++.|+.+++.
T Consensus 199 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 199 -EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred -HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 678899999999999999999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=331.84 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=171.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----------------hhhcceee
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----------------ETFARVSG 961 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~~g 961 (1403)
+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 5699999999999999999999999999999999997653 47999999986531 13456799
Q ss_pred EeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 037155 962 YCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA 1041 (1403)
Q Consensus 962 yv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~ 1041 (1403)
|++|++.+++..|+.||+.+..... ......+..+.++++++.+++.+..+.. +..||||||||++||++|+.
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHc
Confidence 9999999999999999998754221 1123344455688999999998777665 34799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999998764 899999999986 57788999999985 889988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=330.73 Aligned_cols=208 Identities=23% Similarity=0.270 Sum_probs=168.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhh-cceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETF-ARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~-~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... ... +..++|++|++.+++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 356999999999999999999999999999999999973111347999999987542 122 2348999999999999
Q ss_pred CCHHHHHHHHHhhhCCC----CCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 973 VTLYESLLYSAWLRLSS----DVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+|++|++.+........ .....+..+.++++++.++|. +..+..++ ..||||||||++||++|+.+|++|+
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~lll 167 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAI 167 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998764322110 112233345678999999997 45554432 1499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 99999999999999999999999877899999999986 46666 799999984 789888874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=348.08 Aligned_cols=202 Identities=23% Similarity=0.304 Sum_probs=173.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hh----hcceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ET----FARVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~~~~ 969 (1403)
...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.. .. .++.+||++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34689999999999999999999999999999999998653 47999999987542 11 13579999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++++||+||+.+....+. ...++..+.++++++.++|.+..++.+ +.|||||||||+|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 223444566889999999988877764 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 4899999999986 57789999999985 799988874
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=331.42 Aligned_cols=204 Identities=25% Similarity=0.304 Sum_probs=169.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCCh---hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+... ...++.+||++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 46999999999999999999999999999999999975421 357999999987532 334567999999998889
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.+||.||+.+....+... ....+..+.++++++.++|.+ ..++. +..||||||||++|||+|+.+|+||+
T Consensus 96 ~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 96 NLSIFENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred CCcHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998865432111 122334456789999999854 23333 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT 229 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence 9999999999999999999999865 899999999986 57788999999985 789888874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=382.33 Aligned_cols=206 Identities=24% Similarity=0.348 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++| .+|+|.+||.++++...
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p---------------------~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP---------------------WSGEILFDGIPREEIPREV 550 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEeHHHCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876653
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |+||||.++. |+.+.++..+++...+. +..+
T Consensus 551 lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~-------------------------~~~~~~~i~~al~~~~l------~~~i 598 (710)
T TIGR03796 551 LANSVAMVDQDIFLFEG-TVRDNLTLWD-------------------------PTIPDADLVRACKDAAI------HDVI 598 (710)
T ss_pred HHhheeEEecCChhhhc-cHHHHhhCCC-------------------------CCCCHHHHHHHHHHhCC------HHHH
Confidence 6889999999999965 9999998741 11112233333332221 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.|+++.||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.++.+|.+.|++ .++|+|++.|+
T Consensus 599 --~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHr 671 (710)
T TIGR03796 599 --TSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHR 671 (710)
T ss_pred --HhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecC
Confidence 2378899999995 5788999999999999999999999999999999999999999999985 37899998887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ ++...+|+|++|++|++++.|+++++++
T Consensus 672 l--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 672 L--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred H--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 6 4677899999999999999999999874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=317.45 Aligned_cols=221 Identities=25% Similarity=0.366 Sum_probs=183.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
....+++|||+++++||+++|+||||||||||+|+|+|.++| .+|+|.++|++++...+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P---------------------~~G~v~~~G~~it~l~p 73 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP---------------------SSGTVIFRGRDITGLPP 73 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC---------------------CCceEEECCcccCCCCH
Confidence 467899999999999999999999999999999999999976 58999999999988766
Q ss_pred c----ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 262 Q----RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 262 ~----~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
+ .-++--+|...+|++|||.||+.-++..+.. +...-...+.. .+.+ +......
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~~--------~~e~-----------~~~e~A~ 131 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG---LSGLLGRPRAR--------KEER-----------EARERAR 131 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhh---hhhhhccccch--------hhHH-----------HHHHHHH
Confidence 3 4578889999999999999999988654421 00000000000 0000 1122346
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+|+.+||.+.+|+..|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+..+.|++++
T Consensus 132 ~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI 206 (250)
T COG0411 132 ELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206 (250)
T ss_pred HHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 789999999999999988 999999999999999999999999999999999999999999999987656777665
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
- |.-.-++++||+|+||+.|+++.+|+++++.+
T Consensus 207 E-HdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 207 E-HDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred E-eccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 4 56678999999999999999999999999853
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=335.37 Aligned_cols=208 Identities=24% Similarity=0.325 Sum_probs=174.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
..+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---------------------~~G~i~i~g~~~~~~~~ 93 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP---------------------TSGKVLIDGQDIAAMSR 93 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCeEEEECCEEccccCh
Confidence 345799999999999999999999999999999999999865 58999999987654321
Q ss_pred -------cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 262 -------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 262 -------~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
++.++|++|++.+++.+||+||+.+.....+... .+ ...
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--------------------~~--------------~~~ 139 (269)
T cd03294 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR--------------------AE--------------REE 139 (269)
T ss_pred hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCH--------------------HH--------------HHH
Confidence 3579999999999999999999988643221100 00 011
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 335 ~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.++.+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+
T Consensus 140 ~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 214 (269)
T cd03294 140 RAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214 (269)
T ss_pred HHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 245678899999888888865 999999999999999999999999999999999999999999999876557888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++. ++.+++|++++|++|++++.|+.+++.
T Consensus 215 ii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 215 VFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 88776554 778899999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=330.20 Aligned_cols=211 Identities=22% Similarity=0.340 Sum_probs=174.1
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++++++.+ +.+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 70 (237)
T PRK11614 6 LSFDKVSAHY-------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDIT 70 (237)
T ss_pred EEEEeEEEee-------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecC
Confidence 5677776543 235699999999999999999999999999999999997653 4799999998754
Q ss_pred hh----hhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCCH
Q 037155 953 QE----TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV-ELKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 953 ~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSg 1027 (1403)
.. ..++.++|++|+..+++.+||.||+.+..... ...+..+.++++++.+ ++.+..+.. +..|||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCH
Confidence 31 23567999999999999999999998764221 1122234467777777 466555543 347999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 218 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLE 218 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57889999999985 799999
Q ss_pred cCC
Q 037155 1108 GPL 1110 (1403)
Q Consensus 1108 g~~ 1110 (1403)
|+.
T Consensus 219 ~~~ 221 (237)
T PRK11614 219 DTG 221 (237)
T ss_pred CCH
Confidence 875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=344.89 Aligned_cols=205 Identities=22% Similarity=0.322 Sum_probs=175.8
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc----CC---hhh---h-cceeeEe
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KK---QET---F-ARVSGYC 963 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~----~~---~~~---~-~~~~gyv 963 (1403)
++...+|+|+||+|++||+++|+|+||||||||+++|+|...+ ..|+|.++|.+ .. ... . ++.++||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3456799999999999999999999999999999999998663 47999999962 21 111 2 2469999
Q ss_pred ecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 964 EQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 964 ~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
+|++.++|.+||+||+.|+...+ .....++.+.++++++.+||.+..+..++ .||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999886443 23345556678999999999988877643 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1044 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1044 ~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999999764 899999999987 57889999999985 8999998853
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=336.17 Aligned_cols=222 Identities=23% Similarity=0.368 Sum_probs=177.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+.+|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|+++|.+++..
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP---------------------TEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---------------------CCcEEEECCEECccccccc
Confidence 3599999999999999999999999999999999999865 589999999987421
Q ss_pred ---CccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 260 ---VPQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
..++.++||+|++ .+++ .||.||+.|+.+..+.. + .+ ...
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~----------~----------~~--------------~~~ 122 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIP----------K----------EK--------------AEK 122 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCC----------H----------HH--------------HHH
Confidence 1246799999986 4454 69999999875432210 0 00 011
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 335 VTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 335 ~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
.++.+++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|
T Consensus 123 ~~~~~l~~~~L~~~~~~~~~~-----~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~t 196 (288)
T PRK13643 123 IAAEKLEMVGLADEFWEKSPF-----ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQT 196 (288)
T ss_pred HHHHHHHHcCCChhhccCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 345678889996 45666664 4999999999999999999999999999999999999999999999875 4788
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH---HHHHHcCCCCCCCCChHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL---EFFEQMGFKCPERKGVAD 468 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~---~~F~~~G~~cp~~~~~ad 468 (1403)
++++.|++ .++.+++|+|++|++|+++++|+++++. ++++..|+.+|.....++
T Consensus 197 il~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 197 VVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred EEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHH
Confidence 88877665 4788899999999999999999999874 344566777665444333
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=329.41 Aligned_cols=204 Identities=25% Similarity=0.331 Sum_probs=170.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 35699999999999999999999999999999999997653 479999999865321 123469999999999999
Q ss_pred CCHHHHHHHHHhhhCC-----CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 973 VTLYESLLYSAWLRLS-----SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+||+||+.+....... .....++.++.++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+
T Consensus 92 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~ll 166 (242)
T TIGR03411 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLL 166 (242)
T ss_pred CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999886432100 00112234456889999999987777654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 167 LDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred ecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 9999999999999999999999976 799999999986 57788999999985 788888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=329.69 Aligned_cols=215 Identities=23% Similarity=0.292 Sum_probs=173.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 948 (1403)
.+.++++++.+ +++.+|+|||++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFY-------------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEe-------------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 36677776543 2346999999999999999999999999999999999975431 2479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC----CcccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK----PLRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1019 (1403)
.+... ...++.++|++|++.+++ +||+||+.+....... ......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988774 8999999886543211 12233345678889998873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999964 799999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 899988874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=332.75 Aligned_cols=202 Identities=27% Similarity=0.390 Sum_probs=170.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35699999999999999999999999999999999997653 47999999986532 23446799999998888889
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh------hCCCEEE
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIF 1047 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~------~~P~ill 1047 (1403)
||+||+.+...... ...+..++.++++++.++|.+..++.+ ..||||||||++||++|+ .+|++|+
T Consensus 92 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 92 TVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 99999988643211 112233455788999999987777654 479999999999999999 5999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTP 225 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCH
Confidence 999999999999999999999997 66899999999986 57789999999985 788888875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=341.43 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=173.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.... .
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP---------------------DRGKITVLGEPVPSRARLA 75 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECcccHHHH
Confidence 4699999999999999999999999999999999999864 5899999998764321 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.+.++..+.. . .+. ...++.+++
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~----------~~~--------------~~~~~~ll~ 121 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----------T----------REI--------------EAVIPSLLE 121 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC----------H----------HHH--------------HHHHHHHHH
Confidence 467999999999999999999998643322110 0 000 112355788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++
T Consensus 122 ~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~ 195 (303)
T TIGR01288 122 FARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM 195 (303)
T ss_pred HCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH
Confidence 99999988888865 999999999999999999999999999999999999999999999875 478888877665
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. ++.+++|+|++|++|++++.|+.+++.+
T Consensus 196 ~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 196 E-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred H-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4 7888999999999999999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=335.16 Aligned_cols=200 Identities=22% Similarity=0.321 Sum_probs=170.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCC-CCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDI-HSPH 972 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~-~~~~ 972 (1403)
+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4599999999999999999999999999999999997653 47999999987642 234567999999975 3567
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
.|+.||+.+..... ..+..+..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998765332 2233444566889999999988777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+++.|++++++|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 219 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEP 219 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999877999999999986 45 56999999985 789999875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=328.88 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---------------------TSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC---------------------CCceEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999988765432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.++....+... +.+. .. .... . +....++.+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~-------~~~~---~~-~~~~--~-----------~~~~~~~~~ 127 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSG-------LLLA---RA-RREE--R-----------EARERAEEL 127 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccc-------cccc---cc-cccH--H-----------HHHHHHHHH
Confidence 3469999999999999999999988643221000 0000 00 0000 0 011234667
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|
T Consensus 128 l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH 201 (236)
T cd03219 128 LERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEH 201 (236)
T ss_pred HHHcCccchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 8899998877877765 999999999999999999999999999999999999999999999876 5788888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++.+++|+|++|++|++++.|+++++.
T Consensus 202 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 202 DMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred CHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 654 778899999999999999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=331.18 Aligned_cols=216 Identities=25% Similarity=0.306 Sum_probs=175.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 949 (1403)
++++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYY-------------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEe-------------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 5667766543 2346999999999999999999999999999999999976532 24799999998
Q ss_pred cCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCC
Q 037155 950 PKK-----QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLP 1020 (1403)
Q Consensus 950 ~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 1020 (1403)
+.. ...+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.+++.+ ..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 753 123456799999999999999999999886543211 1122333455788999999853 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~ 223 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999965 799999999986 57788999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 224 -G~i~~~~~~ 232 (253)
T PRK14267 224 -GKLIEVGPT 232 (253)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=332.94 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=171.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++.+|+|||+++++|++++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 35699999999999999999999999999999999997653 47999999986532 23456799999999888889
Q ss_pred CHHHHHHHHHhhhC-CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 974 TLYESLLYSAWLRL-SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
|+.|++.+...... ......+...+.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987531100 001111233455788999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999999999999999999877999999999986 57889999999985 7888888754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=293.90 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=171.8
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---h---h-hcceeeEeecCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E---T-FARVSGYCEQTD 967 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~-~~~~~gyv~Q~~ 967 (1403)
.....||++|++.|++||-+||+|||||||||||-+|+|...+ .+|+|.+.|++... + . ..+.+|+|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 4567899999999999999999999999999999999998764 47999999998643 1 1 236799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.+.|++|..||+.....++..... .......+.++.+||.+..+.+. .+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEe
Confidence 999999999999999888764322 22334678999999998877764 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
-||||-+||..+...|.+++-.+.. .|.|.|++||||. +...|||.+-|.. |+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 9999999999999999999999864 5999999999985 6788999999985 77764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.01 Aligned_cols=200 Identities=27% Similarity=0.330 Sum_probs=170.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 973 (1403)
+.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4599999999999999999999999999999999998663 47999999987643 234567999999973 66778
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||.||+.+..... ....++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|+||||||||+
T Consensus 98 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred cHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998865432 2233444566899999999988777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+.++..+++.|++++++ |+|||++||+++ ++ ..||++++|.+ |++++.|+.
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~g~~ 224 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEEGTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999875 899999999986 34 46999999985 789999875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.18 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=176.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
..+|+|+|++|++||+++|+||||||||||+++|+|.++| .+|+|.++|.++....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA---------------------ESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEECCcCcHHH
Confidence 3599999999999999999999999999999999999865 5899999999875432
Q ss_pred ccceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 PQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 ~~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++||+|++ ..++.+||+||+.|+.+..+.. +. + ....++.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~----------~~----------~--------------~~~~~~~~ 124 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP----------HE----------E--------------MKERVNEA 124 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC----------HH----------H--------------HHHHHHHH
Confidence 246799999997 3677789999998864322110 00 0 01134668
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..+..+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|
T Consensus 125 l~~~gL~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH 199 (279)
T PRK13650 125 LELVGMQDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199 (279)
T ss_pred HHHCCCHhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8999999888887765 99999999999999999999999999999999999999999999998755889998888
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH---HHHHcCCCCC
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQMGFKCP 461 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~---~F~~~G~~cp 461 (1403)
++. ++ ..+|+|++|++|+++..|+++++.. .++..|+.+|
T Consensus 200 ~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 200 DLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 765 45 5799999999999999999987652 2334455443
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=324.96 Aligned_cols=201 Identities=28% Similarity=0.361 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++| .+|+|.++|+++.. .++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~--~~~ 73 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---------------------TSGEVLVDGEPVTG--PGP 73 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECcc--ccC
Confidence 4799999999999999999999999999999999999754 58999999987753 356
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++||+|++.+++.+||+||+.++....+... .+ ....++.+++.+
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~ 119 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQGVPK--------------------AE--------------ARERAEELLELV 119 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHHHc
Confidence 79999999999998999999987643221100 00 011245678899
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++.
T Consensus 120 ~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~- 193 (220)
T cd03293 120 GLSGFENAYPHQ-----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID- 193 (220)
T ss_pred CChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-
Confidence 998888877765 99999999999999999999999999999999999999999999986655788888777654
Q ss_pred hHHhhcCEEEEEc--CCeEEEecChh
Q 037155 424 ETYDLFDDIILIS--EGQIVYHGPRD 447 (1403)
Q Consensus 424 ~~~~~fD~IilL~--~G~iv~~G~~~ 447 (1403)
++.+.+|++++|+ +|+++..++.+
T Consensus 194 ~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 194 EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 7788999999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.01 Aligned_cols=201 Identities=24% Similarity=0.370 Sum_probs=170.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 973 (1403)
+.+|+||||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++. .+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 3599999999999999999999999999999999997653 47999999987542 234567999999973 33468
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||.||+.+..... ..+.+...+.++++++.++|.+..++.+ +.||||||||++||+||+.+|++|||||||+
T Consensus 95 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 95 TVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998765432 2334444556889999999988777664 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~ 222 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTV 222 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCH
Confidence 99999999999999999865 899999999986 57789999999985 789999875
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=323.77 Aligned_cols=200 Identities=30% Similarity=0.411 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|.++..... +
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---------------------TSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCCccc
Confidence 3699999999999999999999999999999999999864 58999999988754322 3
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++.+++.+||+||+.+..+..+.. .. + ....++.+++.
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~ 117 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP----------KD----------E--------------IDERVREVAEL 117 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 57999999999998999999998764322110 00 0 01134567889
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++
T Consensus 118 ~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~- 191 (213)
T cd03301 118 LQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ- 191 (213)
T ss_pred cCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-
Confidence 9999888888765 9999999999999999999999999999999999999999999998865578888887765
Q ss_pred hhHHhhcCEEEEEcCCeEEEec
Q 037155 423 PETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G 444 (1403)
.++.+++|+|++|++|++++.|
T Consensus 192 ~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 192 VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCeEEEEECCEEEecC
Confidence 4778899999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=328.56 Aligned_cols=205 Identities=29% Similarity=0.388 Sum_probs=172.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---- 260 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---- 260 (1403)
++|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---------------------TSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEEcccCCHHHH
Confidence 699999999999999999999999999999999999865 5899999999875432
Q ss_pred --ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 --PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.++.++|++|++.+++.+||+||+.+.....+.. . .+ ....++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~ 123 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP----------K----------AE--------------IEERVLE 123 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHH
Confidence 1467999999999999999999998754321110 0 00 0112456
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
.++.+||++..+..+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.
T Consensus 124 ~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s 198 (233)
T cd03258 124 LLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLIT 198 (233)
T ss_pred HHHHCCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 78899998888877754 9999999999999999999999999999999999999999999998765578888887
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++ .++.+++|++++|++|++++.|+.+++.
T Consensus 199 H~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 199 HEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 765 4778899999999999999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=325.30 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=162.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---------------------TRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEehhhcChhH
Confidence 3699999999999999999999999999999999999864 5899999998765432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.++.+..+.. .. + ....++
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~ 120 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVP----------PR----------D--------------ANERVS 120 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHH
Confidence 2467999999999999999999998864322110 00 0 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++
T Consensus 121 ~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v 194 (216)
T TIGR00960 121 AALEKVGLEGKAHALPMQ-----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVA 194 (216)
T ss_pred HHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 678899998888877765 999999999999999999999999999999999999999999999865 47788877
Q ss_pred EecCchhHHhhcCEEEEEcCCeE
Q 037155 418 LLQPAPETYDLFDDIILISEGQI 440 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~i 440 (1403)
.|++ .++.+++|+|++|++|++
T Consensus 195 sH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 195 THDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred eCCH-HHHHHhCCEEEEEeCCcC
Confidence 6655 477789999999999974
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=333.48 Aligned_cols=208 Identities=29% Similarity=0.389 Sum_probs=171.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEEcCccCCh--------hhhcceeeEeecCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKKQ--------ETFARVSGYCEQTD 967 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~--------~~~~~~~gyv~Q~~ 967 (1403)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+... ...++.++|++|++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 356999999999999999999999999999999999976532 135999999986532 22355799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhCC-----CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 037155 968 IHSPHVTLYESLLYSAWLRLS-----SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVAN 1042 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~ 1042 (1403)
.+++.+||+||+.+......+ .....++....++++++.+++.+..++.+ ..||||||||++|||+|+.+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcC
Confidence 999999999999875421100 01112233456889999999987777654 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1043 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1043 P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|.+ |++++.|+..
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999754 899999999986 47788999999985 7889988754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.99 Aligned_cols=204 Identities=22% Similarity=0.289 Sum_probs=169.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCC-----hhhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKK-----QETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|++|++||++||+||||||||||+++|+|..++. +.+|+|.++|.+.. ....++.+||++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 46999999999999999999999999999999999975421 24799999998753 12345679999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
++.+||+||+.+....+. ....+..++.++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++
T Consensus 97 ~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 169 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP-----GGGLSGGQQQRLCIARAIAVEPDV 169 (258)
T ss_pred CCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999988654332 1123344456788999999842 33333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec-----CcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR-----GGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-----gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ .|++++.|+.
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 170 LLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 999999999999999999999999964 699999999986 57789999999972 5899998874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=370.69 Aligned_cols=209 Identities=22% Similarity=0.378 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++++|||.++|+||||||||||+++|+|.++| .+|+|.+||.++++...
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI---------------------DEGEILLDGHDLRDYTLAS 414 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC---------------------CCceEEECCEEhhhcCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++.. ++.+.++..+++...+. +..+
T Consensus 415 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~------------------------~~~~~~~i~~al~~~~l------~~~i 463 (582)
T PRK11176 415 LRNQVALVSQNVHLFND-TIANNIAYART------------------------EQYSREQIEEAARMAYA------MDFI 463 (582)
T ss_pred HHhhceEEccCceeecc-hHHHHHhcCCC------------------------CCCCHHHHHHHHHHhCc------HHHH
Confidence 5789999999999975 99999987521 00112223333322221 1122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .|+++.||.+|+ .++.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++.|+
T Consensus 464 ~--~lp~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr 538 (582)
T PRK11176 464 N--KMDNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR 538 (582)
T ss_pred H--hcccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecc
Confidence 2 378899999996 4677999999999999999999999999999999999999999999998743 6899988887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +..+.||+|++|++|++++.|+++++.+
T Consensus 539 ~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 539 L--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred h--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 6 5778899999999999999999998864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=377.63 Aligned_cols=208 Identities=27% Similarity=0.484 Sum_probs=174.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++| .+|+|.+||+++++...
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p---------------------~~G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP---------------------TEGSVLLDGVDIRQIDPAD 536 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998877654
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++. |+.+.++..+++...+. .+.+
T Consensus 537 lr~~i~~v~Q~~~lf~~-TI~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l-----~~~i- 584 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFYG-TLRDNIALGA-------------------------PYADDEEILRAAELAGV-----TEFV- 584 (694)
T ss_pred HHhccEEECCChhhhhh-hHHHHHhCCC-------------------------CCCCHHHHHHHHHHcCh-----HHHH-
Confidence 5789999999999975 9999998752 11122333334333321 1222
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.|++..||.+|+ .+..||||||||++||||++++|++++||||||+||+.++.+|.+.|+++.+ ++|+|++.|+
T Consensus 585 --~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHr 659 (694)
T TIGR03375 585 --RRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHR 659 (694)
T ss_pred --HhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecC
Confidence 2478899999995 5778999999999999999999999999999999999999999999998753 7899988887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ ++.+.+|+|++|++|+++++|+++++++
T Consensus 660 l--~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 660 T--SLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred H--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 7 4678999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=324.49 Aligned_cols=173 Identities=25% Similarity=0.332 Sum_probs=136.1
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
|+==.++|..||+++++||||-||||+.++|+|..++. +|+ .. .-.++|-||--.--.+.||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445678889999999999999999999999976532 454 11 123788888655556789999876
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 037155 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~ 1060 (1403)
-...-+... .-+..++++-+.|.++.++.+. +|||||.|||+||.+|.++.+|.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 443221111 1124678888999988888754 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1061 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1061 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
..+-+.|++... +++|.+++-||.-+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999874 47899999999753 444668888875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=322.89 Aligned_cols=194 Identities=26% Similarity=0.366 Sum_probs=163.6
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 99999999999999999999999999999998653 47999999987542 1234679999999999999999999987
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~ 1061 (1403)
....+. .. .++.++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456789999999987777654 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1062 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1062 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
.+++.|+++++ .|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999975 4899999999986 57788999999985 7877643
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=326.57 Aligned_cols=198 Identities=23% Similarity=0.344 Sum_probs=166.2
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998653 4799999998764321 12489999999999999999998
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 037155 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~ 1060 (1403)
+...... .....++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7632111 12233344556789999999987777654 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1061 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1061 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57788999999985 788887754
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=376.44 Aligned_cols=207 Identities=25% Similarity=0.411 Sum_probs=168.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
++++|+|+|++++|||.++|+||||||||||+++|+|.++| .+|+|.+||+++++...
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p---------------------~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP---------------------TGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC---------------------CCCEEEECCEEHHhcCHH
Confidence 35799999999999999999999999999999999999865 58999999998876653
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+|+. ||||||.++.. +.+.++..+++...+. +..
T Consensus 552 ~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-------------------------~~~~e~i~~al~~a~l------~~~ 599 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSG-SVRENIAYGLT-------------------------DTPDEEIMAAAKAANA------HDF 599 (711)
T ss_pred HHHhhceEEecCcccccc-CHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCC------HHH
Confidence 5789999999999864 99999988521 1111222233332221 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++ .|+++.||.+|+ .+..||||||||++||||++++|+|++||||||+||+.++..|.+ .. ...++|+|++.|
T Consensus 600 i~--~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItH 672 (711)
T TIGR00958 600 IM--EFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAH 672 (711)
T ss_pred HH--hCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEec
Confidence 22 377889999995 567799999999999999999999999999999999999999988 22 124789998888
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++ ++.+.+|+|++|++|+++++|+++++.+
T Consensus 673 rl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 673 RL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred cH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 76 4678899999999999999999999864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=333.76 Aligned_cols=201 Identities=25% Similarity=0.356 Sum_probs=168.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCCC-CC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH-SP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~-~~ 971 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.. ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 5699999999999999999999999999999999997653 47999999987531 2345679999998753 34
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
..|+.||+.+..... ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++||||||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 568999998764332 1223344456788999999988777653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999986 57788999999985 789988874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=333.02 Aligned_cols=205 Identities=29% Similarity=0.402 Sum_probs=170.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC---hhhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK---QETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ....++.++|++|+..+++.+|
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 5699999999999999999999999999999999997653 4799999998653 2334567999999988889999
Q ss_pred HHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 975 LYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 975 v~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
+.||+.+....... .........+.++++++.+++.+..++.+ ..||||||||++||++|+.+|+||||||||+
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~ 176 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999875321110 00111223455789999999987777654 3799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 177 ~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 233 (265)
T PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPA 233 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 99999999999999999765 899999999986 57789999999985 7888888753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=326.67 Aligned_cols=200 Identities=28% Similarity=0.346 Sum_probs=166.5
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 35699999999999999999999999999999999997653 479999999875321 124579999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE-LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+|+.|++.+....+. .. ..+..+++++.++ +.+..++. +..||||||||++||++|+.+|++++||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 90 LTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred CcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999988654321 11 1223567777776 45555554 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|.+ |++++.|+..
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999998864 899999999986 57778999999985 7899988853
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.08 Aligned_cols=218 Identities=22% Similarity=0.302 Sum_probs=178.3
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGY-------------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEE-------------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 45677776543 235699999999999999999999999999999999997653 479999999875
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1027 (1403)
.. ...++.++|++|++.+++.+|++|++.+....... .....+...+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 32 23446799999999988899999999875311100 00011233456789999999987777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 58889999999985 78999
Q ss_pred ecCCC
Q 037155 1107 AGPLG 1111 (1403)
Q Consensus 1107 ~g~~~ 1111 (1403)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 88853
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=371.85 Aligned_cols=135 Identities=21% Similarity=0.259 Sum_probs=108.3
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELV---ANPS 1044 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~---~~P~ 1044 (1403)
.+...||.|+|.++..-........++..+.+ ++++.+||.+. .+..+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45578999999887653221112223344445 58899999875 56543 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCCC
Q 037155 1045 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPLG 1111 (1403)
Q Consensus 1045 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~~ 1111 (1403)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.+|++++|. .+|+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 368999999753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.93 Aligned_cols=201 Identities=26% Similarity=0.352 Sum_probs=169.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCC-CCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDI-HSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 971 (1403)
+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4599999999999999999999999999999999997653 47999999987631 124567999999863 334
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
..||.|++.+..... ....++..+.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998764321 1233444556889999999988887764 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 221 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTP 221 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999986 57778999999985 799988875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=326.85 Aligned_cols=205 Identities=25% Similarity=0.372 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---------------------DSGKILLDGQDITKLPMHK 71 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEecccCCHhH
Confidence 4699999999999999999999999999999999999865 58999999987654322
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.+.....+.. + .+ ....++.+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~ 117 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS----------K----------KE--------------REEKLEEL 117 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHH
Confidence 346999999999999999999998753221100 0 00 01134567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|+|++.|
T Consensus 118 l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH 191 (232)
T cd03218 118 LEEFHITHLRKSKASS-----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDH 191 (232)
T ss_pred HHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 8899998888877765 999999999999999999999999999999999999999999999875 4778888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 192 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 192 NVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 654 788999999999999999999987753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=320.35 Aligned_cols=190 Identities=22% Similarity=0.333 Sum_probs=161.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC---h----hhhcceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK---Q----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~ 969 (1403)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 35699999999999999999999999999999999998653 4799999998732 1 1235679999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++.+|++||+.+..... .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||
T Consensus 88 ~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 89999999999865432 1223344556889999999987777654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
|||+|||+.++..+.+.|+++.++|+|||+++|++. ..+.||++++|
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999877999999999985 34689998875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.13 Aligned_cols=202 Identities=30% Similarity=0.426 Sum_probs=168.9
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEee-cCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCE-QTDIHSP 971 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~ 971 (1403)
++.+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |.+.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3456799999999999999999999999999999999997653 47999999976422 23456799997 5567778
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+|++|++.+...++. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999988654432 223334456788999999988777764 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999764 899999999986 57788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=331.59 Aligned_cols=204 Identities=26% Similarity=0.324 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.++.....
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP---------------------QRGRVKVMGREVNAENEKW 76 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 3599999999999999999999999999999999999865 58999999988754322
Q ss_pred -cceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 -QRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 -~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++. .++.+||+||+.|+.+..+.. +. + ....++.+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~ 122 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD----------KD----------E--------------VERRVEEA 122 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHH
Confidence 357999999962 445679999998853321110 00 0 01134667
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||.+..++.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|++++.|
T Consensus 123 l~~~~L~~~~~~~~~~-----LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH 196 (274)
T PRK13647 123 LKAVRMWDFRDKPPYH-----LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATH 196 (274)
T ss_pred HHHCCCHHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 8999999888888865 9999999999999999999999999999999999999999999998764 788888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.. .++.+.+|+|++|++|++++.|+++++
T Consensus 197 ~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 197 DV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 54 467789999999999999999998754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=336.74 Aligned_cols=216 Identities=21% Similarity=0.387 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
.++|+|||++|++|++++|+||||||||||+++|+|.++| .+|+|+++|.++.+.
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p---------------------~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS---------------------KYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCeEEECCEEcccccccc
Confidence 4699999999999999999999999999999999999865 589999999876432
Q ss_pred ---------------CccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHH
Q 037155 260 ---------------VPQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFM 322 (1403)
Q Consensus 260 ---------------~~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~ 322 (1403)
..++.++||+|++ .+++ .||+||+.|+....+.. . .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~----------~~----- 151 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------K----------SE----- 151 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------H----------HH-----
Confidence 1246799999986 4565 59999998863321110 0 00
Q ss_pred HHHHhhccchhHHHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH
Q 037155 323 KAVAVAGQETSLVTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICK 401 (1403)
Q Consensus 323 ~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~ 401 (1403)
....++.+++.+||+ +..++.+. .|||||||||+|||||+.+|++|+|||||+|||+.++.++.+
T Consensus 152 ---------~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~ 217 (320)
T PRK13631 152 ---------AKKLAKFYLNKMGLDDSYLERSPF-----GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217 (320)
T ss_pred ---------HHHHHHHHHHHcCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 011345678899996 45665554 499999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH---HHHHHcCCCCCC
Q 037155 402 FLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL---EFFEQMGFKCPE 462 (1403)
Q Consensus 402 ~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~---~~F~~~G~~cp~ 462 (1403)
.|+++.+ .+.|+|++.|++. ++.+.+|+|++|++|++++.|+++++. +.++..|..+|.
T Consensus 218 ~L~~l~~-~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 218 LILDAKA-NNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred HHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999865 4788888776544 677899999999999999999998774 234455555544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=338.72 Aligned_cols=205 Identities=30% Similarity=0.446 Sum_probs=174.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.... .
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~---------------------~~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP---------------------DSGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEcccChHHH
Confidence 4699999999999999999999999999999999999865 5899999998775422 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.+||++|++.+++.+||+||+.|.+++.+... .+ ....++.+++
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~ 119 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKG--------------------QL--------------LKQRVEEMIE 119 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHH
Confidence 4679999999999999999999998654432110 00 0113466889
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+++|++|+|||||+|||+.++.++.+.|+++.+ ++|++++.|++
T Consensus 120 ~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l 192 (301)
T TIGR03522 120 LVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM 192 (301)
T ss_pred HCCCchHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH
Confidence 99999988888865 999999999999999999999999999999999999999999999853 67877776655
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.++.++||+|++|++|++++.|+.+++..
T Consensus 193 -~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 193 -QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred -HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 48899999999999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.28 Aligned_cols=217 Identities=22% Similarity=0.298 Sum_probs=175.3
Q ss_pred CcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--C-ceeEEEEEE
Q 037155 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKI 946 (1403)
Q Consensus 870 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i 946 (1403)
...+.++|+++.+ ++..+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYY-------------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEe-------------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 3356778876654 22469999999999999999999999999999999999753 1 124799999
Q ss_pred cCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccc
Q 037155 947 SGYPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALV 1017 (1403)
Q Consensus 947 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 1017 (1403)
+|.+... ...++.++|++|++.+++ .|++||+.+...... ..+.++..+.++++++.+++.+ ..+..
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9987531 234567999999988777 899999987653321 1223344456889999999843 23332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1018 g~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999964 789999999986 57788999999
Q ss_pred EecCcEEEEecCC
Q 037155 1098 MKRGGRVIYAGPL 1110 (1403)
Q Consensus 1098 l~~gG~~~~~g~~ 1110 (1403)
|++ |+++..|+.
T Consensus 228 l~~-G~i~~~g~~ 239 (260)
T PRK10744 228 MYL-GELIEFGNT 239 (260)
T ss_pred EEC-CEEEEeCCH
Confidence 985 899988874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=377.30 Aligned_cols=208 Identities=27% Similarity=0.412 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++| .+|+|++||.++++...
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p---------------------~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA---------------------RSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---------------------CCcEEEECCEEHHHcCHHH
Confidence 3699999999999999999999999999999999999865 58999999998876553
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. ||+|||.++.+ ++.+.++..+++...+.+ +.+
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~------------------------~~~~~~~i~~a~~~a~l~-----~~i- 594 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGAK------------------------ENVSQDEIWAACEIAEIK-----DDI- 594 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccCC------------------------CCCCHHHHHHHHHHhCCH-----HHH-
Confidence 5789999999999876 99999988521 111122233333333211 122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
..|+.++||.||+ .+.+||||||||++||||++++|++|+||||||+||+.++..+.+.|+++ .++|+|++.|.
T Consensus 595 --~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr 668 (708)
T TIGR01193 595 --ENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHR 668 (708)
T ss_pred --HhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecc
Confidence 2378899999985 57789999999999999999999999999999999999999999999874 36898888887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++ +.+.+|+|++|++|++++.|+++++.+
T Consensus 669 ~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 669 LS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred hH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 64 678899999999999999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=326.81 Aligned_cols=220 Identities=24% Similarity=0.334 Sum_probs=174.0
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--C-ceeEEEEEEc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKIS 947 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~ 947 (1403)
..+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFY-------------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEE-------------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 346777776554 22469999999999999999999999999999999999642 1 1247999999
Q ss_pred CccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 037155 948 GYPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022 (1403)
Q Consensus 948 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1022 (1403)
|.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+...+.++++++.+++.+....... ..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987532 234567999999988887 5999999887543321 1223334567889999998542111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.||++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999954 799999999986 57788999999985 7
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888864
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=333.41 Aligned_cols=200 Identities=24% Similarity=0.359 Sum_probs=166.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCC--C
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTD--I 968 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~--~ 968 (1403)
+.+|+|||++|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 3599999999999999999999999999999999997653 47999999987532 23456799999986 3
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
++ ..||+||+.+..... ....++..+.++++++.++|. ...+.. +..||||||||++||++|+.+|++||
T Consensus 98 ~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LF-EETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44 469999998764332 122334445678899999996 345554 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKP 229 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999877899999999986 57788999999985 788888874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=345.90 Aligned_cols=207 Identities=22% Similarity=0.304 Sum_probs=175.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
...+|+|+|+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p---------------------~sG~I~i~G~~i~~~~~~ 98 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP---------------------TRGQVLIDGVDIAKISDA 98 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---------------------CCCEEEECCEECCcCCHH
Confidence 34689999999999999999999999999999999999865 58999999998765432
Q ss_pred ------cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 262 ------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 262 ------~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
++.++||+|++.+++.+||+||+.|+.+..+... . + ....
T Consensus 99 ~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~----------~----------~--------------~~~~ 144 (400)
T PRK10070 99 ELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINA----------E----------E--------------RREK 144 (400)
T ss_pred HHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCH----------H----------H--------------HHHH
Confidence 2579999999999999999999998754322110 0 0 0113
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++.+++.+||++..++.+.+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|
T Consensus 145 ~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TII 219 (400)
T PRK10070 145 ALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219 (400)
T ss_pred HHHHHHHcCCChhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 45678999999888887765 9999999999999999999999999999999999999999999998765678888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.|++ .++.+++|+|++|++|++++.|+++++.
T Consensus 220 ivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 220 FISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 877654 4788999999999999999999988774
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=368.08 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|++++|||.++|+|+||||||||+++|+|+++| .+|+|.+||+++++..+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p---------------------~~G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL---------------------TEGEIRLDGRPLSSLSHSV 412 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---------------------CCceEEECCEEhhhCCHHH
Confidence 3599999999999999999999999999999999999865 58999999998876553
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++.. . .+.+ ..+++...+. +..+
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~---~--------------------~d~~---i~~a~~~~gl------~~~i 459 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGRD---I--------------------SEEQ---VWQALETVQL------AELA 459 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCCC---C--------------------CHHH---HHHHHHHcCc------HHHH
Confidence 5889999999999987 99999988521 0 1111 2222222221 1122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .|+++.||.+|+ .+..||||||||++|||||+++|+|++||||||+||+.++.+|.+.|+++.. ++|+|+..|+
T Consensus 460 ~--~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr 534 (592)
T PRK10790 460 R--SLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHR 534 (592)
T ss_pred H--hccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecc
Confidence 2 278889999986 5677999999999999999999999999999999999999999999998753 6899988887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +....+|+|++|++|+++..|+++++.+
T Consensus 535 ~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 535 L--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred h--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 7 5677899999999999999999999864
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=359.85 Aligned_cols=208 Identities=27% Similarity=0.364 Sum_probs=175.3
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|++|+++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 5899999887631 235699999999999999999999999999999999998763 479999999886
Q ss_pred C---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCCC
Q 037155 952 K---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLPG 1021 (1403)
Q Consensus 952 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1021 (1403)
+ ...+++.+|||+|++.+++ -|++||+.++.. .+. +.++++++..++.+. .|+.+|..|
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 4 4567889999999998876 599999987521 222 236777888777643 366677554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|++||+++ ..+.+|++++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999886 589999999985 5677999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.17 Aligned_cols=206 Identities=29% Similarity=0.402 Sum_probs=171.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 35699999999999999999999999999999999997653 47999999987532 23345699999998777889
Q ss_pred CHHHHHHHHHhh-hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 974 TLYESLLYSAWL-RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 974 Tv~e~l~~~~~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
||+||+.+.... +........+..+.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 999999875311 10001111233346789999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+|||+.++..+++.|+++.++|.|||+++|+++ ++.+.||++++|++ |+++..|+..
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 166 NHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 999999999999999999877899999999987 57789999999985 7888888753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=323.88 Aligned_cols=203 Identities=26% Similarity=0.398 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---------------------RSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEEcCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999987754332
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.+.....+. .+. ....+.+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~----------------------~~~--------------~~~~~~~ 115 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRR----------------------AKR--------------KARLERV 115 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCc----------------------hhH--------------HHHHHHH
Confidence 35699999999999999999999886432110 000 0112345
Q ss_pred HHHc-CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~l-gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.+ ++++..++.+.+ ||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.
T Consensus 116 l~~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 189 (222)
T cd03224 116 YELFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVE 189 (222)
T ss_pred HHHHHhhhhhhhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 5666 477667777655 999999999999999999999999999999999999999999999875 577888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++ .++.+++|+|++|++|++++.|+.+++.
T Consensus 190 H~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 190 QNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 654 4778899999999999999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=315.39 Aligned_cols=196 Identities=31% Similarity=0.594 Sum_probs=161.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEEcCcc
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 950 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 950 (1403)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999887532 13467999999999999999999999999999999999976522 457999999987
Q ss_pred CCh--hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 951 KKQ--ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 951 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998754211 1222 3479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
||||++||++|+.+|++|||||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777766543367889999999985 788765
Q ss_pred c
Q 037155 1108 G 1108 (1403)
Q Consensus 1108 g 1108 (1403)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=329.96 Aligned_cols=207 Identities=22% Similarity=0.355 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++....
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---------------------DHGEILFDGENIPAMSRSR 78 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEEccccChhh
Confidence 4699999999999999999999999999999999999864 5899999998775432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.+....... ..+. + ....+.
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---------~~~~----------~--------------~~~~~~ 125 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ---------LPAP----------L--------------LHSTVM 125 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC---------CCHH----------H--------------HHHHHH
Confidence 145699999999999999999999875321100 0000 0 011245
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++
T Consensus 126 ~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv 200 (269)
T PRK11831 126 MKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVV 200 (269)
T ss_pred HHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 578899999888888765 999999999999999999999999999999999999999999999876557788887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|++ .++.+++|+|++|++|++++.|+++++.
T Consensus 201 sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 201 SHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred ecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 7654 4788899999999999999999988764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=327.36 Aligned_cols=214 Identities=29% Similarity=0.398 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---------------------TSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---------------------CCceEEECCEeccccCHhH
Confidence 4699999999999999999999999999999999999854 5899999998775432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.++...... ... .+ .+... .. ....++
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~-~~--------------~~~~~~ 126 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS--TWR---SL------FGLFP-KE--------------EKQRAL 126 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccch--hhh---hh------cccCc-HH--------------HHHHHH
Confidence 245799999999999999999999875321100 000 00 00000 00 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++
T Consensus 127 ~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 201 (241)
T cd03256 127 AALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS 201 (241)
T ss_pred HHHHHcCChhhhCCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 678899998777777654 999999999999999999999999999999999999999999999876557888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|++. ++.+++|+|++|++|++++.|+++++.
T Consensus 202 tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 202 LHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 76654 778899999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=324.17 Aligned_cols=203 Identities=29% Similarity=0.425 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--Cc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--VP 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--~~ 261 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|+++... ..
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---------------------TSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEecccchHHH
Confidence 4699999999999999999999999999999999999864 589999999876432 12
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.+..+..+... .+ ....++.+++
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~ 119 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK--------------------SE--------------IKEEVELLLR 119 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHH
Confidence 4679999999999989999999987543221100 00 0112456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++
T Consensus 120 ~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~ 192 (220)
T cd03263 120 VLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM 192 (220)
T ss_pred HcCCHHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCH
Confidence 89998888887765 999999999999999999999999999999999999999999999864 47877777665
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
. ++.+.+|++++|++|++++.|+++++
T Consensus 193 ~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 193 D-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred H-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 4 67789999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.02 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++.....
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---------------------TSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCeEcCcCChHH
Confidence 4699999999999999999999999999999999999864 58999999987654322
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++.+++.+||+||+.+..+..+.. . .+ ....+..++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l 118 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----------K----------EK--------------IRERADELL 118 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHH
Confidence 457999999999999999999998753321110 0 00 011245678
Q ss_pred HHcCCcc--cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 341 KLLGLDI--CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 341 ~~lgL~~--~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+.+||++ ..++.+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.
T Consensus 119 ~~l~l~~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s 193 (242)
T cd03295 119 ALVGLDPAEFADRYPHE-----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred HHcCCCcHHHHhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 8899985 56666644 9999999999999999999999999999999999999999999998765578888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 194 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 194 HDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 7654 778899999999999999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.54 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=167.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC-ceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~- 92 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV- 92 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-
Confidence 35699999999999999999999999999999999997531 2347999999987642 234567999999988887
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
.|++||+.+....+.... ......+.++++++.++|.+....... .....||||||||++|||+|+.+|++++|||||
T Consensus 93 ~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 170 (246)
T PRK14269 93 KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLLDEPT 170 (246)
T ss_pred ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 699999988654332111 122334557889999999532111111 124579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 171 ~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 171 SALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred ccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 99999999999999999865 899999999986 57788999999985 899988874
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=326.61 Aligned_cols=206 Identities=22% Similarity=0.304 Sum_probs=166.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC---CCceeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|.+... ...++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 56999999999999999999999999999999999952 211237999999987642 2345679999999888
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++ .|++||+.+....+.. ...+...+.++++++.+++.+..+.... ..+..||||||||++|||+|+.+|++|+||
T Consensus 96 ~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLD 171 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLMD 171 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 76 6999999886543311 1122334567889999998642211111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 172 EPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 172 EPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999995 4899999999986 57788999999985 799999874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=334.95 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=171.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCC--CC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTD--IH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~ 969 (1403)
..+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.. ..+++.+|||+|++ .+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 5699999999999999999999999999999999997653 47999999987532 13456799999997 57
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
.|.+|+.+++........ .....+..+.+.++++.+||.+ ..++. +..||||||||++||+||+.+|+|||+
T Consensus 106 ~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 106 NPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred CCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 889999999977544321 2334455667899999999963 45554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||..++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+ |++++.|+.
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~ 239 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTK 239 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999764 999999999986 46678999999985 899999985
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=340.68 Aligned_cols=209 Identities=26% Similarity=0.403 Sum_probs=172.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|+|+++++||.+||+|++|||||||++.|+|-+++ .+|+|+.||.++.....
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~---------------------~~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP---------------------QQGSITLNGVEIASLDEQ 408 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC---------------------CCCeeeECCcChhhCChh
Confidence 34699999999999999999999999999999999998865 58999999998876554
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.+++++|...+|.. |+|+||..+. |+...++..++....+.+ +.
T Consensus 409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~-------------------------~~AsDEel~~aL~qvgL~-----~l- 456 (573)
T COG4987 409 ALRETISVLTQRVHLFSG-TLRDNLRLAN-------------------------PDASDEELWAALQQVGLE-----KL- 456 (573)
T ss_pred hHHHHHhhhccchHHHHH-HHHHHHhhcC-------------------------CCCCHHHHHHHHHHcCHH-----HH-
Confidence 5789999998877765 9999998862 332223333333222211 11
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
....+++.||.+| |.++.||||||||++|||+|++++++++|||||.|||+.|+.++++.|.+.+ .++|++++.|
T Consensus 457 --~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTH 531 (573)
T COG4987 457 --LESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTH 531 (573)
T ss_pred --HHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEec
Confidence 1235678899999 5788899999999999999999999999999999999999999999998755 4899999888
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+-. -.+.||+|++|++|+++++|+++++++
T Consensus 532 rL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 532 RLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred ccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 765 457899999999999999999999874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=322.22 Aligned_cols=195 Identities=26% Similarity=0.386 Sum_probs=164.6
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h---h-cceeeEeecCCCCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T---F-ARVSGYCEQTDIHSP 971 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~---~-~~~~gyv~Q~~~~~~ 971 (1403)
.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . . ++.++|++|++.+++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 599999999999999999999999999999999998653 479999999875321 1 1 256999999998889
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
.+|+.||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 102 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 102 TLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred CcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654321 223344566889999999987776654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |++++
T Consensus 174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 9999999999999999999754 899999999986 34 56999999985 67754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=334.66 Aligned_cols=204 Identities=19% Similarity=0.271 Sum_probs=169.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC-c-eeEEEEEEcCccCCh---hhh----cceeeEeecCC-
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YIEGDIKISGYPKKQ---ETF----ARVSGYCEQTD- 967 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~~~~~---~~~----~~~~gyv~Q~~- 967 (1403)
..+|+||||+|++||++||+|+||||||||+++|+|...+ + ..+|+|.++|.++.. ... ++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4699999999999999999999999999999999997542 2 357999999987532 111 23699999998
Q ss_pred -CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc---ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 968 -IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL---RDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 968 -~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
.+.|.+|+.+++........ ....++.++.+.++++.+||.+. .+.. +.+|||||||||+||+||+.+|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-----p~~LSgGq~QRv~iArAL~~~P 172 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-----PHQLSGGMSQRVMIAMAIACRP 172 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-----chhCCHHHHHHHHHHHHHHhCC
Confidence 47889999998876543321 22344556678999999999753 3333 4579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1044 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+||++||||+|||+.++..+++.|+++.+ .|.|||++|||++ .+.+.+|++++|. +|++++.|+.
T Consensus 173 ~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~-~G~ive~g~~ 238 (326)
T PRK11022 173 KLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY-AGQVVETGKA 238 (326)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999999999976 4899999999986 4678899999998 5899999985
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=358.05 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANP---SIIF 1047 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P---~ill 1047 (1403)
.+||.|++.|...+.. .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3788888887654321 1124678999999753 4544 3479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
|||||+|||+.+...+++.|+++.+.|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 346899999994 47999999974
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=327.81 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=177.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-----------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQ-----------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcC-----------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 467777765431 1123589999999999999999999999999999999998653 479999999875
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 037155 952 KQ---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1027 (1403)
.. ...++.++|++|++. +++..|+.+|+.+..... ....++..+.++++++.+++.+..+..+ ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 32 345667999999974 677889999998864322 1233344456789999999988777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 455 4999999985 89999
Q ss_pred ecCCC
Q 037155 1107 AGPLG 1111 (1403)
Q Consensus 1107 ~g~~~ 1111 (1403)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 98753
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=365.29 Aligned_cols=207 Identities=26% Similarity=0.425 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++++||+.++|+||||||||||+++|+|.++| .+|+|.+||.++.+...
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p---------------------~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP---------------------QQGEILLNGQPIADYSEAA 411 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEEhhhCCHHH
Confidence 3699999999999999999999999999999999999865 58999999998877653
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++||+.++.. +.+.++..+++...+. +..+
T Consensus 412 ~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-------------------------~~~~~~i~~al~~~~l------~~~i 459 (574)
T PRK11160 412 LRQAISVVSQRVHLFSA-TLRDNLLLAAP-------------------------NASDEALIEVLQQVGL------EKLL 459 (574)
T ss_pred HHhheeEEcccchhhcc-cHHHHhhcCCC-------------------------ccCHHHHHHHHHHcCC------HHHH
Confidence 5789999999998875 99999988521 1111122222222211 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-. ++++||.+|+ .++.||||||||++||||++++|++|+||||||+||+.++..|.+.|+++. .++|+|++.|+
T Consensus 460 --~~-p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr 533 (574)
T PRK11160 460 --ED-DKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHR 533 (574)
T ss_pred --cC-ccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 23 7789999995 577799999999999999999999999999999999999999999999875 37899998888
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++ +...+|+|++|++|++++.|+++++.+
T Consensus 534 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 534 LT--GLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred hh--HHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 75 556799999999999999999999864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=321.13 Aligned_cols=198 Identities=25% Similarity=0.366 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++.. ..++
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~-~~~~ 70 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---------------------DSGEVLFDGKPLDI-AARN 70 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCCchhH-HHHc
Confidence 4699999999999999999999999999999999998854 58999999987654 2356
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|++.+++.+||+||+.+..+..+.. ..+ ....++.+++.+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~ 116 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLKGLK--------------------KEE--------------ARRRIDEWLERL 116 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--------------------hHH--------------HHHHHHHHHHHc
Confidence 7999999999999999999998754322110 000 011345678899
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++.|++.
T Consensus 117 ~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~- 189 (210)
T cd03269 117 ELSEYANKRVEE-----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME- 189 (210)
T ss_pred CChHHHhCcHhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-
Confidence 998888877755 999999999999999999999999999999999999999999999875 4678877766554
Q ss_pred hHHhhcCEEEEEcCCeEEEec
Q 037155 424 ETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 424 ~~~~~fD~IilL~~G~iv~~G 444 (1403)
++.+++|++++|++|++++.|
T Consensus 190 ~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 190 LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHhhhEEEEEeCCEEEecC
Confidence 777899999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.66 Aligned_cols=203 Identities=25% Similarity=0.351 Sum_probs=169.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------hhcceeeEeecCC--C
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------TFARVSGYCEQTD--I 968 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~ 968 (1403)
++.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 35699999999999999999999999999999999997653 479999999875421 1356799999986 4
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+.+.+||+|++.+...... ........+.++++++.+++. ...+..+ ..||||||||++|||+|+.+|++|+
T Consensus 101 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6678999999977543211 122233445688999999995 5666543 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDV 235 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCH
Confidence 99999999999999999999999865 899999999986 56778999999984 899998885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=360.72 Aligned_cols=209 Identities=23% Similarity=0.326 Sum_probs=175.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+||||+|++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.... ..++.+|||+|++.+++.
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 3569999999999999999999999999999999999765423479999999876421 124569999999988899
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+||+||+.+....+.......++..+.++++++.+++.+..++.++ .||||||||++||++|+.+|+||||||||
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt 171 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPT 171 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999886543211111223344568899999999887777644 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+...
T Consensus 172 ~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 229 (506)
T PRK13549 172 ASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAG 229 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeeccccc
Confidence 999999999999999999877999999999986 57788999999985 78999988653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=328.51 Aligned_cols=215 Identities=24% Similarity=0.345 Sum_probs=176.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++..+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 366777765431 1234699999999999999999999999999999999998653 479999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 037155 952 KQ---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1027 (1403)
.. ..+++.+||++|++. .++.+||+||+.+..... ....++....++++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 42 235667999999974 567899999998864322 1223344456889999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..||++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 599999999986 34 47999999985 78888
Q ss_pred ecCC
Q 037155 1107 AGPL 1110 (1403)
Q Consensus 1107 ~g~~ 1110 (1403)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8874
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=341.38 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=175.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCc----cCC
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH----ELN 257 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~----~~~ 257 (1403)
....+|+|+|+.|++||+++|+||||||||||+++|+|.++| .+|+|+++|. ++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---------------------~~G~I~idG~~~~~~i~ 93 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---------------------SRGSVLVKDGDGSIDVA 93 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CCcEEEECCEecccccc
Confidence 456799999999999999999999999999999999999865 5899999996 332
Q ss_pred CCCc-------cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhcc
Q 037155 258 EFVP-------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQ 330 (1403)
Q Consensus 258 ~~~~-------~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~ 330 (1403)
.... ++.++||+|++.+++.+||+||+.|+....+... .+
T Consensus 94 ~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~----------------------- 140 (382)
T TIGR03415 94 NCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPE----------AE----------------------- 140 (382)
T ss_pred cCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH-----------------------
Confidence 2211 2479999999999999999999998754322110 00
Q ss_pred chhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 037155 331 ETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410 (1403)
Q Consensus 331 ~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 410 (1403)
....++.+++.+||++..|..+++ |||||||||+|||||+.+|+||+|||||+|||+.++.++.+.|+++.+..
T Consensus 141 -~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~ 214 (382)
T TIGR03415 141 -RRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL 214 (382)
T ss_pred -HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc
Confidence 011346678999999888888865 99999999999999999999999999999999999999999999997766
Q ss_pred CcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 411 DVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 411 ~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++|+|++.|+. .++.+++|+|++|++|+++..|+++++.
T Consensus 215 ~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 215 NKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 78888877655 4788999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=323.27 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=162.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---------------------TSGEVRVDGTDISKLSEKE 75 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---------------------CceeEEECCEehhhcchhH
Confidence 4699999999999999999999999999999999999864 5899999998775432
Q ss_pred ----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 ----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 ----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.++.++|++|++.+++.+||+||+.++....+... .+ ....+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~ 121 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPK--------------------KE--------------RRERA 121 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCH--------------------HH--------------HHHHH
Confidence 13579999999999999999999988643221100 00 01134
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..++|+|+
T Consensus 122 ~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 122 EELLERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHHcCCchhhhcChhh-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 5678899998887877765 99999999999999999999999999999999999999999999987645788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeE
Q 037155 417 ALLQPAPETYDLFDDIILISEGQI 440 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~i 440 (1403)
+.|++. ++. .+|++++|++|++
T Consensus 197 ~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 197 VTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred EECCHH-HHh-hhcEEEEeeCCcC
Confidence 887765 454 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.30 Aligned_cols=209 Identities=22% Similarity=0.314 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.+++.. .++.+|+|.++|+++....
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~----------------~~~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIP----------------GAPDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccccc----------------CCCCCeEEEECCEEhhhcchHH
Confidence 369999999999999999999999999999999999982100 0135899999998765432
Q ss_pred --ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 --PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.++.++|++|++.++ .+||+||+.++.+..+.. +..+ ....++.
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~-------------------~~~~--------------~~~~~~~ 122 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIK-------------------LKEE--------------LDERVEE 122 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCC-------------------cHHH--------------HHHHHHH
Confidence 246799999998888 789999998864322110 0000 0113456
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..+..+. ...||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .|+|++.
T Consensus 123 ~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~s 197 (227)
T cd03260 123 ALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVT 197 (227)
T ss_pred HHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEe
Confidence 7889999877666540 2459999999999999999999999999999999999999999999998763 6777776
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhh
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDN 448 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~ 448 (1403)
|++ .++.+++|+|++|++|++++.|++++
T Consensus 198 H~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 198 HNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred ccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 655 47788999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=318.42 Aligned_cols=222 Identities=25% Similarity=0.348 Sum_probs=194.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
..-++|+|+.++.||+..|||-||||||||+++|.++.+| ++|+|+++|.++.....
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep---------------------t~G~ilv~g~di~~~~~~~ 99 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP---------------------TRGEILVDGKDIAKLSAAE 99 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC---------------------CCceEEECCcchhcCCHHH
Confidence 4568999999999999999999999999999999999865 68999999998766542
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+++|+|+..++|+.||.||..|+.+.+|.+.. | .+.+.
T Consensus 100 Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~----------e------------------------r~~~a 145 (386)
T COG4175 100 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKA----------E------------------------REERA 145 (386)
T ss_pred HHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHH----------H------------------------HHHHH
Confidence 47899999999999999999999999999886421 1 12234
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
.+.|+..||+...+..+.+ ||||+||||.+||||+.+|+||+||||+|+|||--+.++.+.|.++.+..++|+|+
T Consensus 146 ~~~l~~VgL~~~~~~yp~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF 220 (386)
T COG4175 146 LEALELVGLEGYADKYPNE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF 220 (386)
T ss_pred HHHHHHcCchhhhhcCccc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE
Confidence 6688999999999988866 99999999999999999999999999999999999999999999998888899887
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhc
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~ 474 (1403)
.. |...|.+++.|+|.+|.+|+||..|+++|++ ..|...-+++|...+.
T Consensus 221 it-HDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl--------~~PAndYV~~Fv~~v~ 269 (386)
T COG4175 221 IT-HDLDEALRIGDRIAIMKDGEIVQVGTPEEIL--------LNPANDYVRDFVRNVD 269 (386)
T ss_pred Ee-cCHHHHHhccceEEEecCCeEEEeCCHHHHH--------cCccHHHHHHHHhcCC
Confidence 65 5677999999999999999999999999997 3466666777776653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=334.58 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=171.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEEcCccCCh---hh---hc-ceeeEeecCC--
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKKQ---ET---FA-RVSGYCEQTD-- 967 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~---~~---~~-~~~gyv~Q~~-- 967 (1403)
..+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.++.. .. ++ +.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 56999999999999999999999999999999999976531 237999999987632 22 22 4699999998
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..+.+|||||||||+||+||+.+|+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~p~~LSgG~~QRv~IArAL~~~P~lli 184 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MYPHEFSGGMRQRVMIAMALLCRPKLLI 184 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 67899999999987654332 233445556788999999997543221 1 2346899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+||||+|||+.++..++++|+++.++ |.|||++|||++ .+.+.+|++++|. +|++++.|+.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~-~G~ive~g~~ 246 (330)
T PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY-AGRTMEYGNA 246 (330)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999999765 899999999986 4667899999997 5899999985
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.72 Aligned_cols=195 Identities=28% Similarity=0.409 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-Ccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-VPQ 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-~~~ 262 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|.++... ..+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---------------------DSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---------------------CceEEEECCCcccchHHHH
Confidence 4699999999999999999999999999999999999854 589999999876432 124
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++.+++.+||+||+.+..+..+. ....++.+++.
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~ 113 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGI--------------------------------------RKKRIDEVLDV 113 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCC--------------------------------------cHHHHHHHHHH
Confidence 6799999999999999999999875321100 00123557888
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..++.+++ |||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++.
T Consensus 114 ~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~ 187 (208)
T cd03268 114 VGLKDSAKKKVKG-----FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS 187 (208)
T ss_pred cCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence 9998888877765 999999999999999999999999999999999999999999999876 5788888776554
Q ss_pred hhHHhhcCEEEEEcCCeEEEec
Q 037155 423 PETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G 444 (1403)
++.+++|++++|++|++++.|
T Consensus 188 -~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 188 -EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred -HHHHhcCEEEEEECCEEEecC
Confidence 777899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=325.55 Aligned_cols=222 Identities=21% Similarity=0.257 Sum_probs=177.4
Q ss_pred cCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEE
Q 037155 869 RPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIK 945 (1403)
Q Consensus 869 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~ 945 (1403)
.+..+.++|+++.. +.+.+|+|||+++++||++||+||||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYY-------------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEE-------------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 34457888887654 235699999999999999999999999999999999997542 13579999
Q ss_pred EcCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCC
Q 037155 946 ISGYPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLP 1020 (1403)
Q Consensus 946 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 1020 (1403)
++|.+... ...++.++|++|++.+++ .||+||+.+...... .......++.+.++++.++|.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 234567999999988877 699999988643221 11233444567889999998542222222 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~- 236 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY- 236 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-
Confidence 245799999999999999999999999999999999999999999999996 4799999999986 5778999999998
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
+|++++.|+.
T Consensus 237 ~G~i~~~g~~ 246 (267)
T PRK14237 237 LGDLIEYDKT 246 (267)
T ss_pred CCEEEEeCCH
Confidence 4899999885
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=325.33 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=168.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--Cc-eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|.+... ..+++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 469999999999999999999999999999999999753 21 247999999987532 2346679999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++.+|++||+.+...... .....+.++.++++++.+++......... ..+..||||||||++||++|+.+|++|+||
T Consensus 97 ~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999987643321 11223334557889999998542111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+++..|+.
T Consensus 174 EP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14256 174 EPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGDLVECGET 231 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999975 689999999986 5778999999997 5899998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=327.59 Aligned_cols=213 Identities=26% Similarity=0.358 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++....
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---------------------SSGSILLEGTDITKLRGKK 73 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---------------------CccEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999864 5899999998765432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.++...... ... .+ .+..+ .+ ....++
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~-~~--------------~~~~~~ 127 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKP--TWR---SL------LGRFS-EE--------------DKERAL 127 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhccccccc--chh---hh------hcccc-HH--------------HHHHHH
Confidence 246799999999999999999999875321100 000 00 00000 00 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..+..+.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++
T Consensus 128 ~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 202 (243)
T TIGR02315 128 SALERVGLADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN 202 (243)
T ss_pred HHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 678889998877776654 999999999999999999999999999999999999999999999876557788887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.|++. ++.+++|+|++|++|++++.|+++++
T Consensus 203 tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 203 LHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred eCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 76654 67789999999999999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=318.77 Aligned_cols=197 Identities=26% Similarity=0.397 Sum_probs=165.0
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTD 967 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~ 967 (1403)
++++.+ |||+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 344445 99999999 99999999999999999999998653 47999999986531 12456799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.+++.+|+.||+.+..... .....++.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++|+
T Consensus 85 ~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9989999999998764321 12233456788999999987666543 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999765 899999999986 56788999999985 7887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=323.14 Aligned_cols=202 Identities=30% Similarity=0.437 Sum_probs=172.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.... ..++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 35699999999999999999999999999999999997653 479999999876432 234679999999998899999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||++||++|+.+|++++|||||+||
T Consensus 90 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~L 161 (237)
T TIGR00968 90 RDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGAL 161 (237)
T ss_pred HHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987654331 222333456789999999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++++.|+.
T Consensus 162 D~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 162 DAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 999999999999998765 899999999986 5778899999998 5789998885
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=394.68 Aligned_cols=232 Identities=25% Similarity=0.341 Sum_probs=179.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccccc-chhh---------------c----------------c
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHEN-LRVR---------------F----------------Q 230 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~---------------~----------------~ 230 (1403)
+.+||+|+|++|+||+.+||+||||||||||+++|+|+++|. .... + .
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999999999999999999872 0000 0 0
Q ss_pred cch-hhhhhhccCCCcceEEEECCccCCCCCc---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHH
Q 037155 231 SNK-FLIIRIWKTEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 306 (1403)
Q Consensus 231 ~~~-~~~~~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~ 306 (1403)
..+ -..-......+.+|+|++||+++.+... ++.+|||+|++.+|+ .||||||.|+.
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~------------------ 1320 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK------------------ 1320 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC------------------
Confidence 000 0000111112368999999999877653 688999999999995 59999999862
Q ss_pred HHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeC
Q 037155 307 EKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDE 386 (1403)
Q Consensus 307 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDE 386 (1403)
++...++..+|+..++. .|.+. .|++++||.|| +.+..||||||||++|||||+++|+||+|||
T Consensus 1321 -------~~at~eeI~~A~k~A~l-----~~fI~---~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1321 -------EDATREDVKRACKFAAI-----DEFIE---SLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred -------CCCCHHHHHHHHHHcCC-----HHHHH---hCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11122334444444332 12322 48999999999 4677799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcC----CeEE-EecChhhHHH
Q 037155 387 ISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISE----GQIV-YHGPRDNVLE 451 (1403)
Q Consensus 387 ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~----G~iv-~~G~~~~~~~ 451 (1403)
|||+||+.++..|.+.|+++....++|+|++.|++ ++.+.+|+|++|++ |+++ ++|+++++++
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999999987533478999888876 57889999999999 9965 8999999863
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.80 Aligned_cols=198 Identities=31% Similarity=0.447 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--Ccc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--VPQ 262 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--~~~ 262 (1403)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|+++... ..+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---------------------DAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---------------------CCceEEECCEEcccCHHHHH
Confidence 699999999999999999999999999999999999865 589999999877532 124
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++.+++.+||+||+.+..+..+.. . .+ ....++.+++.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~ 123 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLK----------G----------DE--------------LTARLEELADR 123 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHH
Confidence 67999999999999999999998753321110 0 00 01134567899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++.
T Consensus 124 ~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~ 197 (218)
T cd03266 124 LGMEELLDRRVGG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQ 197 (218)
T ss_pred cCCHHHHhhhhhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 9999888887765 999999999999999999999999999999999999999999999865 4778888777654
Q ss_pred hhHHhhcCEEEEEcCCeEEEec
Q 037155 423 PETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G 444 (1403)
++.+.+|++++|++|++++.|
T Consensus 198 -~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 198 -EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred -HHHHhcCEEEEEECCEEeecC
Confidence 788899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=341.63 Aligned_cols=194 Identities=27% Similarity=0.420 Sum_probs=168.2
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCCCCCCCCCH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999997653 47999999987532 1245679999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.|+.... ...+..+.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12233456889999999988877764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999865 899999999986 57788999999985 799998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=329.81 Aligned_cols=217 Identities=22% Similarity=0.306 Sum_probs=177.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCce-eEEEEEEcCcc
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP 950 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 950 (1403)
.++++++++..+ ...+.+|+|||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~-----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYP-----------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcC-----------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 356777765431 112459999999999999999999999999999999999765321 13899999987
Q ss_pred CCh---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 037155 951 KKQ---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1026 (1403)
... ...++.+||++|++. .++..||+||+.|..... ....++..+.++++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 234567999999974 567899999998764322 2334445566889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+ +.||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 34 57999999985 8999
Q ss_pred EecCC
Q 037155 1106 YAGPL 1110 (1403)
Q Consensus 1106 ~~g~~ 1110 (1403)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=330.01 Aligned_cols=208 Identities=26% Similarity=0.379 Sum_probs=170.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc------eeEEEEEEcCccCCh---hhhcceeeEeecCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YIEGDIKISGYPKKQ---ETFARVSGYCEQTD 967 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~ 967 (1403)
++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+... ...++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 356999999999999999999999999999999999976432 127999999987532 33456689999998
Q ss_pred CCCCCCCHHHHHHHHHhhhC-CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh------
Q 037155 968 IHSPHVTLYESLLYSAWLRL-SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV------ 1040 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~------ 1040 (1403)
..++.+|++||+.+...... .......+..+.++++++.+++.+..++.+ ..|||||||||+||++|+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcccccc
Confidence 76667999999987532111 011111233456789999999987766543 479999999999999999
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1041 ---ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1041 ---~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++++.|+..
T Consensus 168 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred ccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 599999999999999999999999999999765 899999999986 57788999999985 7899988753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=333.51 Aligned_cols=205 Identities=23% Similarity=0.350 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----- 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----- 258 (1403)
.++|+|||+.|++||+++|+||||||||||+++|+|.++| .+|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP---------------------DTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CCcEEEEeceecccccccc
Confidence 3699999999999999999999999999999999999865 57999999865421
Q ss_pred ----------------------CCccceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCC
Q 037155 259 ----------------------FVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPD 315 (1403)
Q Consensus 259 ----------------------~~~~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~ 315 (1403)
...++.+|||+|++ ..+...||+|||.|+....+.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~---------- 138 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------K---------- 138 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------H----------
Confidence 01246799999985 3444579999999864332210 0
Q ss_pred chHHHHHHHHHhhccchhHHHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHH
Q 037155 316 PEIDAFMKAVAVAGQETSLVTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS 394 (1403)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~ 394 (1403)
.+ ....++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.
T Consensus 139 ~~--------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~ 199 (305)
T PRK13651 139 EE--------------AKKRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQ 199 (305)
T ss_pred HH--------------HHHHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 00 011346678999996 567777755 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 395 TTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 395 t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++..+.+.|+++.+ .+.|+|++.|+. .++.+.+|+|++|++|++++.|+++++.
T Consensus 200 ~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 200 GVKEILEIFDNLNK-QGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999875 478887776654 4788999999999999999999998864
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=321.79 Aligned_cols=201 Identities=27% Similarity=0.404 Sum_probs=171.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|+|++++||++++|+|+||||||||+++|+|..++ ..|+|.++|.+.... ..++.+||++|++.+++.+|++
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 5699999999999999999999999999999999998653 379999999876431 1346799999999998899999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+....+. .......+.++++++.+++.+..++.+ ..||+|||||++||++|+.+|++++|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 222334456788999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1057 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999764 899999999986 57788999999985 788888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=331.40 Aligned_cols=205 Identities=20% Similarity=0.302 Sum_probs=168.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP---------------------TTGTVTVDDITITHKTKDK 78 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEECccccccc
Confidence 4699999999999999999999999999999999999865 589999999887532
Q ss_pred ---CccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 260 ---VPQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
..++.+|||+|++ .+++ .||+||+.|+....+.. .. + ...
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~----------~~----------~--------------~~~ 123 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMN----------LD----------E--------------VKN 123 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCC----------HH----------H--------------HHH
Confidence 1246799999986 4554 59999998863321110 00 0 011
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 335 VTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 335 ~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
.++.+++.+||+ +..++.+.+ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.+..+.|
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 198 (286)
T PRK13646 124 YAHRLLMDLGFSRDVMSQSPFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKT 198 (286)
T ss_pred HHHHHHHHcCCChhhhhCCccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 345678899996 567776654 99999999999999999999999999999999999999999999987655788
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++++.|+.. ++.+.+|+|++|++|++++.|+++++.
T Consensus 199 vl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 199 IILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 888776554 778899999999999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=327.90 Aligned_cols=216 Identities=22% Similarity=0.288 Sum_probs=174.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFY-------------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEE-------------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 46778876653 234699999999999999999999999999999999997542 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc----ccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL----RDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 1019 (1403)
.+... ..+++.+||++|++.+++. ||.||+.+....+.. .....+..+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 2345679999999888775 999999887543321 11223334567889999999642 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.||++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999965 789999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=318.12 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=181.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---h---h-hcceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E---T-FARVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~-~~~~~gyv~Q~~~~~ 970 (1403)
..-++|+|++|+.||+..|||-||||||||+++|.+..++ ..|+|.++|.++.. . . .++.+++|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 3468999999999999999999999999999999998764 47999999987532 2 2 245799999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|+.||.||..|+..++ +++++++++++.++++.+||....+.+ +++||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 567788999999999999999999987 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+|.|||--+..+++.|.++.++ ++|||++|||++ |.+..-|||.+|+ +|+++..|.+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999998654 899999999998 7889999999997 68999999864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=329.11 Aligned_cols=216 Identities=25% Similarity=0.374 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++|++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p---------------------~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP---------------------EAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCcEEEECCEECCcCcHHH
Confidence 3599999999999999999999999999999999999865 58999999998765332
Q ss_pred -cceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 -QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 -~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++ ..++.+||+|||.++.+..+.. ..+ ....++.+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~--------------------~~~--------------~~~~~~~~ 124 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP--------------------REE--------------MVERVDQA 124 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC--------------------HHH--------------HHHHHHHH
Confidence 46799999997 3666789999998864322110 000 01135678
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|++++.|
T Consensus 125 l~~~gL~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH 199 (279)
T PRK13635 125 LRQVGMEDFLNREPHR-----LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199 (279)
T ss_pred HHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 8999999888888765 99999999999999999999999999999999999999999999998755788888887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH---HHHHcCCCCC
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQMGFKCP 461 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~---~F~~~G~~cp 461 (1403)
++. ++. .+|+|++|++|++++.|+.+++.. .+...|..+|
T Consensus 200 ~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 200 DLD-EAA-QADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CHH-HHH-cCCEEEEEECCEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 765 454 599999999999999999987753 3444454443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=322.94 Aligned_cols=201 Identities=20% Similarity=0.299 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|+++|+++.....
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---------------------TSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEEcCcCCHHH
Confidence 4699999999999999999999999999999999999854 58999999988765432
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++|++|++.+++.+||+||+.+.....+.. . .+ ....+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~----------~~--------------~~~~~ 126 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKK----------P----------AE--------------INSRA 126 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------H----------HH--------------HHHHH
Confidence 256999999999999999999998854321100 0 00 01134
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..++.+++ ||||||||++||+|++.+|++++|||||+|||+.++.++.+.|+++.+..+.|+|+
T Consensus 127 ~~~l~~~gl~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 201 (233)
T PRK11629 127 LEMLAAVGLEHRANHRPSE-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201 (233)
T ss_pred HHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5678899998877777755 99999999999999999999999999999999999999999999987655788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecCh
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPR 446 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~ 446 (1403)
+.|++. ++. .+|++++|++|++++.|+.
T Consensus 202 ~sH~~~-~~~-~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 202 VTHDLQ-LAK-RMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred EeCCHH-HHH-hhCEEEEEECCEEEEEecc
Confidence 877764 444 4689999999999988864
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=343.08 Aligned_cols=209 Identities=25% Similarity=0.418 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---------------------~sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---------------------TAGTVLVAGDDVEALSARA 74 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---------------------CCcEEEECCEEcCcCCHHH
Confidence 4699999999999999999999999999999999999865 58999999988765432
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++.+||+||+.++...... ++. .... +....++..+
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~--~~~--------------~~~~--------------~~~~~v~~~l 124 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS--RFD--------------TWTE--------------TDRAAVERAM 124 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcc--ccc--------------CCCH--------------HHHHHHHHHH
Confidence 46799999999988899999999885321100 000 0000 0112456788
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||.+..++.+.+ |||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|+
T Consensus 125 e~vgl~~~~~~~~~~-----LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd 198 (402)
T PRK09536 125 ERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD 198 (402)
T ss_pred HHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 999999888888765 999999999999999999999999999999999999999999999986 47788877655
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
..++.+++|++++|++|++++.|+++++.
T Consensus 199 -l~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 199 -LDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred -HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 45888999999999999999999998864
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=331.04 Aligned_cols=185 Identities=19% Similarity=0.196 Sum_probs=139.7
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+++.+++..++.-+.++++|+||+||||+++++.|...+ ..|-+-+.+ +.+++|-.|..+-+-.+.|.+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc--------cceecchhHhhhhHHHHHhHHH
Confidence 688999999999999999999999999999999996542 356555543 3568898886554434444332
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
.+-...+ ++... +.+++-+..+||..- +.. .+.+||||||-||++|.....+|.+|+|||||+.||-
T Consensus 448 -d~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 448 -DFMEKSF--PGKTE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred -HHHHHhC--CCCCH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccH
Confidence 2222222 22222 335778899999642 222 2457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
.+-..+-+.|++. +..||++||+.+ -+-..|+++.+.++|...-..|.
T Consensus 516 dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 516 DSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeecc
Confidence 9999999999887 468999999976 37788999999986544444443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=321.57 Aligned_cols=207 Identities=33% Similarity=0.512 Sum_probs=169.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++++ .+.+|+|.++|+++.....+
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~------------------~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG------------------GTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCC------------------CCCceEEEECCEECChHHhc
Confidence 357999999999999999999999999999999999998621 13589999999877543446
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH-HHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLK 341 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-il~ 341 (1403)
+.++|++|++.+++.+||+||+.|+....+.... ..+. .....+. .++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~------------------~~~~-------------~~~~~~~~~l~ 129 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS------------------SDAI-------------RKKRVEDVLLR 129 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc------------------chHH-------------HHHHHHHHHHH
Confidence 7899999999999999999999986433211000 0000 0001223 678
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+++++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++.|++
T Consensus 130 ~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~ 203 (226)
T cd03234 130 DLALTRIGGNLVKG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQP 203 (226)
T ss_pred hhcchhhhcccccC-----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 88888777776654 999999999999999999999999999999999999999999999865 478999988887
Q ss_pred chhHHhhcCEEEEEcCCeEEEec
Q 037155 422 APETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
..++.+.+|++++|++|++++.|
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 204 RSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CHHHHHhCCEEEEEeCCEEEecC
Confidence 66899999999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=316.27 Aligned_cols=198 Identities=24% Similarity=0.318 Sum_probs=166.7
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 46799999999999999999999999999999998653 47999999987542 2345679999999999999999999
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+.+...... .. ..+.++.++++++.++|.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 11 1223445788999999987777653 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1059 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|+ +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999986 5677899999998 478888764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=340.60 Aligned_cols=190 Identities=26% Similarity=0.410 Sum_probs=166.4
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCCCCCCCCCH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|+..++|++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998653 47999999987532 2245779999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
+||+.|... ....+.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345789999999988777764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999765 899999999986 67889999999985 899998875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=312.74 Aligned_cols=189 Identities=59% Similarity=0.964 Sum_probs=158.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++++++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 4 LTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74 (192)
T ss_pred EEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence 5677776654210 0125699999999999999999999999999999999996422235799999998765
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 037155 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKR 1032 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1032 (1403)
...++.++|++|++.+++.+|++||+.+...++ .||||||||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~qr 116 (192)
T cd03232 75 -KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKR 116 (192)
T ss_pred -HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhHH
Confidence 345667999999998899999999998753110 499999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1033 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1033 l~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++.+.||++++|+++|++++.|
T Consensus 117 v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999987799999999998644678899999998548888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=326.78 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=172.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+.++|+++.+ +.+.+|+|+||+|++||+++|+||||||||||+++|+|..+. .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISY-------------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEE-------------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46778876554 234699999999999999999999999999999999997542 12479999999
Q ss_pred ccCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccC
Q 037155 949 YPKK-----QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGL 1019 (1403)
Q Consensus 949 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1019 (1403)
.+.. ....++.++|++|++.+++ .||+||+.+.+..+. .. ...++.++++++.+++.. ..+..
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 151 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES--- 151 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC---
Confidence 8753 2234567999999998887 499999988764332 11 122345677888888742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 152 --~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 152 --GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999964 799999999986 5788999999998
Q ss_pred c----------CcEEEEecCC
Q 037155 1100 R----------GGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~----------gG~~~~~g~~ 1110 (1403)
+ +|++++.|+.
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 5 2678888875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=322.23 Aligned_cols=206 Identities=26% Similarity=0.401 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++| .+|+|.++|.++.....
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---------------------QEGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---------------------CceEEEECCEEcccCChhh
Confidence 4699999999999999999999999999999999999864 58999999987654322
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.+.++|++|++.+++.+||+||+.+.....+.. .. + ....++.+++
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~ 118 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----------RA----------E--------------ARERIAALLA 118 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHH
Confidence 257999999998888999999998753321100 00 0 0112456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++
T Consensus 119 ~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 119 RLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred HcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 89998888887765 9999999999999999999999999999999999999999999998764578888887766
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. ++. .+|++++|++|++++.|+.+++.+
T Consensus 194 ~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 194 D-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred h-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 5 454 599999999999999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=318.38 Aligned_cols=192 Identities=28% Similarity=0.358 Sum_probs=160.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 71 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---------------------SSGSILLNGKPIKAKERRK 71 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEEhhhHHhhc
Confidence 4699999999999999999999999999999999999864 5899999998765433356
Q ss_pred eEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++|++|++. .+..+||+||+.+.....+ . ....++.+++.
T Consensus 72 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----------------------~----------------~~~~~~~~l~~ 113 (205)
T cd03226 72 SIGYVMQDVDYQLFTDSVREELLLGLKELD----------------------A----------------GNEQAETVLKD 113 (205)
T ss_pred ceEEEecChhhhhhhccHHHHHhhhhhhcC----------------------c----------------cHHHHHHHHHH
Confidence 7999999973 3446799999987532110 0 00124567899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..++.+++ ||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++.
T Consensus 114 ~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~ 187 (205)
T cd03226 114 LDLYALKERHPLS-----LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE 187 (205)
T ss_pred cCCchhcCCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 9999888887765 999999999999999999999999999999999999999999999865 4788888776654
Q ss_pred hhHHhhcCEEEEEcCCeEE
Q 037155 423 PETYDLFDDIILISEGQIV 441 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv 441 (1403)
++.+++|++++|++|+++
T Consensus 188 -~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 188 -FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred -HHHHhCCEEEEEECCEEC
Confidence 677899999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=324.72 Aligned_cols=207 Identities=22% Similarity=0.311 Sum_probs=166.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--c-eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.+... ...++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 5699999999999999999999999999999999997531 1 247999999986532 1345679999999888
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++. |++||+.+....+. ........++.++++++.++|.+....... ..+..||||||||++|||+|+.+|+||+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 875 99999987643321 111223334567889999998652111111 123579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999986 4899999999986 57788999999985 789888874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=320.82 Aligned_cols=199 Identities=28% Similarity=0.409 Sum_probs=170.4
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+|+|+|++|+|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 89999999999999999999999999999999997653 479999999876431 234679999999999999999999
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+.+..... .....+..+.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777664 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1059 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 899999999986 57788999999985 789888874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=342.51 Aligned_cols=213 Identities=25% Similarity=0.442 Sum_probs=177.6
Q ss_pred cCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcC
Q 037155 869 RPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 948 (1403)
Q Consensus 869 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 948 (1403)
.++.+..+|+++..+ +++++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 355666667776542 234799999999999999999999999999999999998764 479999999
Q ss_pred ccC---ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc------cccccC
Q 037155 949 YPK---KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR------DALVGL 1019 (1403)
Q Consensus 949 ~~~---~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~ 1019 (1403)
.+. +...+++.++||+|++.+++ -|++||+.++. .+.++ +.+.++++..+|.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 45678899999999998875 59999999863 12222 3367788888876544 555665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
. .++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3 457999999999999999999999999999999999999999999999986 599999999974 567789999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |++++.|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 899998874
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=313.67 Aligned_cols=183 Identities=45% Similarity=0.754 Sum_probs=156.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-- 259 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-- 259 (1403)
.++.+|+|+|+.+++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|+++...
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------------------~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN------------------VSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC------------------CCcceEEEECCEECccchh
Confidence 3567999999999999999999999999999999999998631 13689999999887543
Q ss_pred CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 260 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
..++.++|++|++.+++.+||+||+.++++.
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------------------------------------------- 110 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRC------------------------------------------------- 110 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhh-------------------------------------------------
Confidence 2356799999999999999999999774210
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
. .+..+ ..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|++++.|
T Consensus 111 -~-------~~~~~-----~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 111 -K-------GNEFV-----RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred -c-------cccch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 0 12333 3499999999999999999999999999999999999999999999987654678888888
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEec
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
|+..++.+.+|++++|++|++++.|
T Consensus 178 h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 178 QASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCHHHHHHhCCeEEEEECCEEEecC
Confidence 8878899999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=332.00 Aligned_cols=219 Identities=19% Similarity=0.301 Sum_probs=174.0
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.++-. ......+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 36677776654210 00013599999999999999999999999999999999997653 479999999865
Q ss_pred C--------hhhhcceeeEeecCCCC-CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 037155 952 K--------QETFARVSGYCEQTDIH-SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPG 1021 (1403)
Q Consensus 952 ~--------~~~~~~~~gyv~Q~~~~-~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 1021 (1403)
. ....++.++|++|++.. ....|++||+.+..... ....++..+.++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 2 12345679999998732 23469999998864322 122334445678899999994 5666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998754 899999999986 57789999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 789888874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=323.88 Aligned_cols=196 Identities=25% Similarity=0.352 Sum_probs=165.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4699999999999999999999999999999999997653 47999999987532 234567999999988776 69
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
++||+.+....+ .. ....++++++.++|. +..++. +..||||||||++||+||+.+|++|+|||||+
T Consensus 93 v~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 93 VKDNIEYGPMLK---GE----KNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred HHHHHhcchhhc---Cc----HHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999998754321 11 123477899999996 455554 34799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999764 899999999986 57788999999985 788888774
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=335.65 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=171.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
...+|+|||++|++||+++|+|+||||||||+++|+|.+++ .+|+|.++|.++....
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---------------------~~G~I~~~G~~i~~~~~~ 91 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---------------------TDGEVAWLGKDLLGMKDD 91 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---------------------CCcEEEECCEECCcCCHH
Confidence 35799999999999999999999999999999999999864 5899999999876543
Q ss_pred ----ccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 261 ----PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 261 ----~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
.++.++||+|++ .++|.+||+||+.+..+....+ +.+. + ...
T Consensus 92 ~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~--------~~~~----------~--------------~~~ 139 (331)
T PRK15079 92 EWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK--------LSRQ----------E--------------VKD 139 (331)
T ss_pred HHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC--------CCHH----------H--------------HHH
Confidence 246799999997 5888999999998754321100 0000 0 011
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 335 VTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 335 ~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
.++.+++.+||. +..++.+.+ |||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+..+.|
T Consensus 140 ~~~~~l~~vgl~~~~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~t 214 (331)
T PRK15079 140 RVKAMMLKVGLLPNLINRYPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLS 214 (331)
T ss_pred HHHHHHHHcCCChHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 345678899994 456666654 99999999999999999999999999999999999999999999997766778
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+|++.|. ...+.+++|+|++|++|++++.|+.+++.
T Consensus 215 il~iTHd-l~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 215 LIFIAHD-LAVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7776654 45788899999999999999999998874
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=333.71 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=168.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--ceeEEEEEEcCccCCh---hhh----cceeeEeecCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKKQ---ETF----ARVSGYCEQTD 967 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~----~~~~gyv~Q~~ 967 (1403)
...+|+||||+|++||++||+|+||||||||+++|+|.... ...+|+|.++|.++.. ... ++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35699999999999999999999999999999999997542 1347999999987532 111 24699999997
Q ss_pred C--CCCCCCHHHHHHHHHhhhCCCC---CcHHHHHHHHHHHHHHcCCCCcc---cccccCCCCCCCCHHHHHHHHHHHHH
Q 037155 968 I--HSPHVTLYESLLYSAWLRLSSD---VDTKKRKIFVDEVMELVELKPLR---DALVGLPGVNGLSTEQRKRLTIAVEL 1039 (1403)
Q Consensus 968 ~--~~~~lTv~e~l~~~~~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~~---~~~vg~~~~~~LSgGqrqRl~IA~aL 1039 (1403)
. +.|.+||.+++.+......... ....+..+.+.++++.+||.+.. +.. +..|||||||||+||+||
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-----p~~LSgG~~QRv~iArAL 173 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-----PYELTEGECQKVMIAIAL 173 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-----chhCCHHHHHHHHHHHHH
Confidence 5 5788999999976432111000 11123345688999999997532 333 457999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1040 ~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+.+|+||||||||+|||+.++..++++|+++.++ |.|||++|||++ .+.+.+|++++|. +|++++.|+.
T Consensus 174 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~-~G~ive~g~~ 243 (330)
T PRK15093 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLY-CGQTVETAPS 243 (330)
T ss_pred HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999999864 899999999986 5778899999998 4899999985
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=322.41 Aligned_cols=196 Identities=23% Similarity=0.308 Sum_probs=166.3
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 89999999999999999999999999999997653 479999999875431 124579999999999999999999987
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~ 1061 (1403)
..... ... .+..++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 95 ~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred ccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 53211 111 1233456889999999988777764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1062 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1062 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
.+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999998754 899999999986 57788999999985 799998875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=329.89 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=169.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCC-CCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDI-HSPH 972 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~-~~~~ 972 (1403)
+.+|+|||++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++. .+..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 4699999999999999999999999999999999998653 47999999987642 234677999999974 2334
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
.||.|++.|..... .....+.++.++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 101 ~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 101 TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 69999998875432 2233444566899999999988877764 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .||++++|++ |++++.|+.
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~~~g~~ 228 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVVMEGTP 228 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999764 999999999987 454 4999999985 789998875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=329.86 Aligned_cols=207 Identities=28% Similarity=0.374 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC--C--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE--F-- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~--~-- 259 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++.. .
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---------------------~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---------------------SSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CccEEEECCEECCCCcchH
Confidence 4599999999999999999999999999999999999864 58999999988641 1
Q ss_pred -CccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 -VPQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..++.++|++|++. .+...||+||+.++....+.. .. + ....++
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~ 123 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP----------ED----------E--------------VRKRVD 123 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHH
Confidence 12467999999973 334579999998753321110 00 0 011346
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||.+..++.+++ ||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|++++
T Consensus 124 ~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv 198 (283)
T PRK13636 124 NALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA 198 (283)
T ss_pred HHHHHCCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 688999999888887765 999999999999999999999999999999999999999999999987557888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.|+.. ++.+.+|+|++|++|++++.|+.+++..
T Consensus 199 sH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 199 THDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred ecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 66554 6778999999999999999999988753
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=322.97 Aligned_cols=208 Identities=22% Similarity=0.340 Sum_probs=167.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF----- 259 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~----- 259 (1403)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|... .+.+|+|.++|+++...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~----------------~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPG----------------VRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcC----------------CCCceEEEECCEEccccccchH
Confidence 589999999999999999999999999999999999864200 01289999999877542
Q ss_pred CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 260 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
..++.++|++|++.+++ +||+||+.+..+..+.. +..+ ....++.+
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~-------------------~~~~--------------~~~~~~~~ 124 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIK-------------------DKKE--------------LDEIVEES 124 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCC-------------------CHHH--------------HHHHHHHH
Confidence 12467999999998888 99999998864322100 0000 01124567
Q ss_pred HHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 340 LKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 340 l~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++.+||. +..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|
T Consensus 125 l~~~~l~~~~~~~~~~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii 197 (247)
T TIGR00972 125 LKKAALWDEVKDRLHDSALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIV 197 (247)
T ss_pred HHHcCCCcchhhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEE
Confidence 8889997 566666654 999999999999999999999999999999999999999999999875 36777
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.|++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 198 ivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 198 IVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 7766554 788899999999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=320.27 Aligned_cols=201 Identities=24% Similarity=0.324 Sum_probs=166.0
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc--eeEEEEEEcCccCChhhh-cceeeEeecCCC--CCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIKISGYPKKQETF-ARVSGYCEQTDI--HSPHVT 974 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 974 (1403)
+|+|+|+++++|++++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999976530 147999999987654322 357999999974 557789
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP---LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+.|++.+...... ....+..+.++++++.+++.+ ..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643321 112333456889999999973 44444 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999764 899999999986 57788999999985 889888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=322.99 Aligned_cols=205 Identities=21% Similarity=0.355 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.++...
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---------------------TSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCChhH
Confidence 4699999999999999999999999999999999999854 589999999887542
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..++.++|++|++.+++.+||+||+.|+... .+.. .. + ....++
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~----------~~----------~--------------~~~~~~ 118 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGAS----------KE----------E--------------AEKQAR 118 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCC----------HH----------H--------------HHHHHH
Confidence 1245799999999999999999999875311 1000 00 0 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..|..+.+ ||||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.+ .++|+|++
T Consensus 119 ~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~ 192 (240)
T PRK09493 119 ELLAKVGLAERAHHYPSE-----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIV 192 (240)
T ss_pred HHHHHcCChHHHhcChhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE
Confidence 678899998877777754 999999999999999999999999999999999999999999999865 47888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|++. ++.+++|++++|++|++++.|+.+++.
T Consensus 193 sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 193 THEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 76654 777899999999999999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=324.72 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=173.0
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--Cc-eeEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~ 949 (1403)
+.++|+++.+ +++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|.
T Consensus 13 l~i~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 13 YQINGMNLWY-------------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS 79 (259)
T ss_pred EEEeeEEEEE-------------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE
Confidence 5777776543 23469999999999999999999999999999999999653 21 13799999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 037155 950 PKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024 (1403)
Q Consensus 950 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1024 (1403)
+... ...++.+||++|++.+++. |++||+.+....+.. ...++..+.++++++.+++.+....... ..+..
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 155 (259)
T PRK14274 80 NILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLH-TQALS 155 (259)
T ss_pred EccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhh-CCccc
Confidence 7531 2345679999999888875 999999876543211 1223334557888999998542111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||++||++|+.+|+|++|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i 232 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GEL 232 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999986 57789999999984 899
Q ss_pred EEecCC
Q 037155 1105 IYAGPL 1110 (1403)
Q Consensus 1105 ~~~g~~ 1110 (1403)
+..|+.
T Consensus 233 ~~~g~~ 238 (259)
T PRK14274 233 VECNDT 238 (259)
T ss_pred EEECCH
Confidence 998874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.69 Aligned_cols=211 Identities=25% Similarity=0.401 Sum_probs=175.0
Q ss_pred CcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 870 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
+-.++|+|+++++. +++++|++|||+|++||.+||+|+|||||||++++|.+..+ .+|+|.|||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34589999987763 24569999999999999999999999999999999999665 3699999999
Q ss_pred cCC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccC
Q 037155 950 PKK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGL 1019 (1403)
Q Consensus 950 ~~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~ 1019 (1403)
+++ .+.+|+.+||||||..++ +-||.+|+.|+. .+.+.+ +|-++.+..++.+ -.++.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 864 456788999999988776 569999999974 233322 2455556665543 34566776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
.|. .|||||||||+||||+++||+|+++|||||.||.++...+++.+.+. ..|+|+|++.|+. +..+.||+|++|+
T Consensus 484 rG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred ccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 654 59999999999999999999999999999999999999999999994 3589999999986 4778999999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |++...|+.
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 6 788888874
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=323.12 Aligned_cols=202 Identities=24% Similarity=0.273 Sum_probs=166.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.+... ...++.+||++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 56999999999999999999999999999999999975421 247999999987632 2345679999999988
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
++ .|++||+.|....... ....+..+.++++++.+++.+ ..+.. +..||+|||||++||++|+.+|+|
T Consensus 97 ~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 168 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS-----ALKLSGGQQQRLCIARTIAVKPDV 168 (251)
T ss_pred CC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 87 8999999886543211 122334456788999998843 23332 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKT 230 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCH
Confidence 999999999999999999999999876 699999999986 57788999999985 789998875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=297.06 Aligned_cols=208 Identities=27% Similarity=0.429 Sum_probs=170.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
++.+|++||++++||||++|+||||||||||||+|+|++.| .+|++++||++++.+.+.
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p---------------------~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP---------------------DSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC---------------------CCCeEeeCCcChhhCCHH
Confidence 35699999999999999999999999999999999999865 589999999999887653
Q ss_pred ---ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 263 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 263 ---~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
+.-|..+|+..+-...||+|-+.++..-.+.+.. +. .+ ....+..
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~-----------------~~--e~-------------~~i~~~a 119 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE-----------------PE--ED-------------ERIAAQA 119 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhcccccccCCC-----------------ch--hh-------------HHHHHHH
Confidence 5678999998766567999999998654432211 10 11 1234556
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
|...++.+.+.... +.|||||||||.+||.|+. ++++||||||||+||......++++.|++++. |..
T Consensus 120 la~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~ 193 (259)
T COG4559 120 LAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGA 193 (259)
T ss_pred HHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCc
Confidence 77777877776555 4599999999999999974 44699999999999999999999999999985 555
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++ ++|+-.-+..++|+|++|.+||++..|++++++
T Consensus 194 V~~-VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 194 VLA-VLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred EEE-EEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 555 456666888999999999999999999999875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=317.77 Aligned_cols=195 Identities=24% Similarity=0.368 Sum_probs=162.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---------------------TSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999864 5899999998775432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.+.....+.. . .+ ....++
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~ 118 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP----------P----------RE--------------IRKRVP 118 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHH
Confidence 2357999999999999999999998864322110 0 00 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++
T Consensus 119 ~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiiv 192 (214)
T cd03292 119 AALELVGLSHKHRALPAE-----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVA 192 (214)
T ss_pred HHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE
Confidence 678889998888877765 999999999999999999999999999999999999999999999865 47788887
Q ss_pred EecCchhHHhhcCEEEEEcCCeE
Q 037155 418 LLQPAPETYDLFDDIILISEGQI 440 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~i 440 (1403)
.|++ .++.+++|++++|++|++
T Consensus 193 tH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 193 THAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred eCCH-HHHHHhCCEEEEEeCCcC
Confidence 7665 477788999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=323.33 Aligned_cols=214 Identities=26% Similarity=0.320 Sum_probs=171.7
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--Cc-eeEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~ 949 (1403)
+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|... +. ..+|+|.++|.
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 6 LQVSDLSVYY-------------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred EEEEeeEEEE-------------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 5677776543 23469999999999999999999999999999999999632 21 13799999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCC
Q 037155 950 PKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLP 1020 (1403)
Q Consensus 950 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 1020 (1403)
+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS---- 145 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC----
Confidence 7531 234567999999988877 899999988653321 1112233455778899998753 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|++
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~ 222 (252)
T PRK14239 146 -ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD 222 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999865 699999999986 57788999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 223 -G~i~~~g~~ 231 (252)
T PRK14239 223 -GDLIEYNDT 231 (252)
T ss_pred -CEEEEeCCH
Confidence 789988874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=355.11 Aligned_cols=210 Identities=28% Similarity=0.396 Sum_probs=174.3
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36889999887631 134699999999999999999999999999999999998664 47999999988
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCC
Q 037155 951 KK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLP 1020 (1403)
Q Consensus 951 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1020 (1403)
.+ ...+++.+|||+|++.+++ .|++||+.++. .+.+. +.+.++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 64 3557889999999998875 59999998642 12222 235667777776543 45667755
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
| .+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|++||+++ ....||++++|++
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 4 46999999999999999999999999999999999999999999986 4899999999985 4567999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999984
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=325.70 Aligned_cols=205 Identities=25% Similarity=0.330 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++....
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---------------------QSGEIKIDGITISKENLKE 80 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEecCcCCHHH
Confidence 4689999999999999999999999999999999999864 5899999998875432
Q ss_pred ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++|++|++. .++.+||+||+.++....+.. . .+ ....++.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------~----------~~--------------~~~~~~~~ 126 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP----------P----------KK--------------MKDIIDDL 126 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC----------H----------HH--------------HHHHHHHH
Confidence 2467999999973 667789999998753211100 0 00 01134667
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|
T Consensus 127 l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH 201 (271)
T PRK13632 127 AKKVGMEDYLDKEPQN-----LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201 (271)
T ss_pred HHHcCCHHHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEe
Confidence 8999999888887765 99999999999999999999999999999999999999999999987644578888888
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++ ..+|+|++|++|++++.|+.+++.
T Consensus 202 ~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 202 DMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred chh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 775 44 479999999999999999988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=324.56 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---------------------EAGTIRVGDITIDTARSLS 74 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCeEEEECCEEcccccccc
Confidence 3699999999999999999999999999999999999854 589999999876432
Q ss_pred -------CccceEEEeccCCCCCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccc
Q 037155 260 -------VPQRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQE 331 (1403)
Q Consensus 260 -------~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~ 331 (1403)
..++.++||+|++.+++.+||+||+.++... .+. ...+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~--------------------~~~~-------------- 120 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE--------------------PKEE-------------- 120 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCC--------------------CHHH--------------
Confidence 1245799999999999999999999875321 100 0000
Q ss_pred hhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 332 TSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 332 ~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
....++.+++.+||++..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+
T Consensus 121 ~~~~~~~~l~~~gl~~~~~~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~ 194 (250)
T PRK11264 121 ATARARELLAKVGLAGKETSYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK 194 (250)
T ss_pred HHHHHHHHHHHcCCcchhhCChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC
Confidence 011245678889998877777655 999999999999999999999999999999999999999999999875 47
Q ss_pred cEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 412 VTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 412 ~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|+|++.|++ .++.+++|+|++|++|++++.|+.+++.
T Consensus 195 ~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 195 RTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 7887776654 4788899999999999999999988763
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=326.31 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=168.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC--CCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI--HSPH 972 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~--~~~~ 972 (1403)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. +.+.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 4699999999999999999999999999999999998653 47999999987642 123356999999875 5678
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+|+.+++.+...... ........+.++++++.++|. +..+.. +..||||||||++||++|+.+|+||+||||
T Consensus 104 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 104 QRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred hhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 899999988654332 122334445688999999994 555554 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 234 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGST 234 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999764 899999999986 57778999999984 888888874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=355.55 Aligned_cols=207 Identities=28% Similarity=0.374 Sum_probs=174.5
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---h-hhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E-TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~-~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... . ..++.+||++|++.+++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 35699999999999999999999999999999999997653 37999999987532 1 124569999999989999
Q ss_pred CCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+||+|++.+....+.. ...+..+.++.++++++.++|.+..++.++ .|||||||||+||+||+.+|++||||||
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEP 168 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEP 168 (501)
T ss_pred CcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999886432211 111223344568899999999888777644 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1052 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
|+|||+.++..+++.|+++++.|+|||++||+++ ++.+.||++++|++ |+++..|+...
T Consensus 169 t~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (501)
T PRK10762 169 TDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVAD 227 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCc
Confidence 9999999999999999999877999999999986 57789999999985 78998888654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.53 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=176.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++..+- ..+..+|+|||+++++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~ 72 (277)
T PRK13642 5 LEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLT 72 (277)
T ss_pred EEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEECC
Confidence 567777655421 1123599999999999999999999999999999999998653 4799999998764
Q ss_pred h---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 953 Q---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 144 (277)
T PRK13642 73 AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGG 144 (277)
T ss_pred cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHH
Confidence 3 234667999999974 567889999998765432 122334445688999999998777765 3479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++..
T Consensus 145 ~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (277)
T PRK13642 145 QKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIKE 221 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999865 999999999986 34 46999999985 788888
Q ss_pred cCC
Q 037155 1108 GPL 1110 (1403)
Q Consensus 1108 g~~ 1110 (1403)
|+.
T Consensus 222 g~~ 224 (277)
T PRK13642 222 AAP 224 (277)
T ss_pred CCH
Confidence 874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=316.68 Aligned_cols=194 Identities=28% Similarity=0.391 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---------------------SRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999854 5899999998876432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.++....+.. + .+ ....++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~-------------------~-~~--------------~~~~~~ 119 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK-------------------E-RE--------------IQRRVG 119 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCC-------------------H-HH--------------HHHHHH
Confidence 2457999999999999999999998864322110 0 00 011345
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++
T Consensus 120 ~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~ 193 (214)
T TIGR02673 120 AALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVA 193 (214)
T ss_pred HHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE
Confidence 678899998877777765 999999999999999999999999999999999999999999999865 47888887
Q ss_pred EecCchhHHhhcCEEEEEcCCe
Q 037155 418 LLQPAPETYDLFDDIILISEGQ 439 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~ 439 (1403)
.|++ .++.+++|++++|++|+
T Consensus 194 tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 194 THDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred eCCH-HHHHHhcCEEEEecCCC
Confidence 7665 47888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=321.79 Aligned_cols=202 Identities=25% Similarity=0.340 Sum_probs=165.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--c-eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+||+|++||+++|+||||||||||+++|+|.... . +.+|+|.++|.+... ...++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 4699999999999999999999999999999999996431 1 147999999987542 2345679999999888
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..+.. +..||||||||++|||+|+.+|++
T Consensus 96 ~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS-----ALGLSGGQQQRLCIARALAVEPEV 167 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC-----CCCCCHHHHHHHHHHHHHhcCCCE
Confidence 77 8999999986543211 122334456788888888743 23333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 168 LLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999864 899999999986 57788999999985 788888864
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=353.46 Aligned_cols=210 Identities=23% Similarity=0.392 Sum_probs=174.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|++|+++ +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEH
Confidence 588999988763 124599999999999999999999999999999999998664 479999999875
Q ss_pred C---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 K---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
+ ...+++.+|||+|++.+++. |++||+.++.. .+.+. +.+.++++..++.+ -.|+.+|..|
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 4 35677889999999988765 99999987531 12222 23566666666643 2467777644
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999985 4899999999985 5678999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 899999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=329.57 Aligned_cols=221 Identities=22% Similarity=0.276 Sum_probs=176.1
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+.++|+++.+.. +.+.+|+|||++|++||++||+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 4678887765421 224599999999999999999999999999999999997531 23479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1023 (1403)
.++.. ...++.++||+|++.+++ .|++||+.|...... ....+...+.++++++.++|.+-.+..++.. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDKA-GN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhCC-cc
Confidence 98642 235677999999998774 799999998643221 1112223345678889988854333334432 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999876 799999999986 46777999999984 89
Q ss_pred EEEecCC
Q 037155 1104 VIYAGPL 1110 (1403)
Q Consensus 1104 ~~~~g~~ 1110 (1403)
+++.|+.
T Consensus 302 i~e~g~~ 308 (329)
T PRK14257 302 IEEAGET 308 (329)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=331.57 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
..+|+|||++|++||+++|+||||||||||+++|+|.+++.. .+.+|+|.++|+++.....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~-----------------~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG-----------------RVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-----------------CCcceEEEECCEECCcCCHHH
Confidence 569999999999999999999999999999999999986421 1358999999998765432
Q ss_pred -----cceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 262 -----QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 262 -----~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
++.++||+|++ .+.|.+||.+++....+.... ..+. +...
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~---------~~~~------------------------~~~~ 129 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG---------GNKK------------------------TRRQ 129 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC---------CCHH------------------------HHHH
Confidence 13699999998 578999999998654322100 0000 0112
Q ss_pred HHHHHHHHcCCcc---cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 335 VTDYVLKLLGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 335 ~~~~il~~lgL~~---~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
.++.+++.+||++ ..+... +.|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+
T Consensus 130 ~~~~~L~~~gL~~~~~~l~~~p-----~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 130 RAIDLLNQVGIPDPASRLDVYP-----HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHCCCCChHHHHhCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3466789999975 234444 45999999999999999999999999999999999999999999999987667
Q ss_pred cEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 412 VTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 412 ~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|+|++.|... .+.+++|+|++|++|++++.|+.+++.
T Consensus 205 ~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 205 MALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 88887766544 677899999999999999999998875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.10 Aligned_cols=190 Identities=51% Similarity=0.862 Sum_probs=159.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC--CCceeEEEEEEcCc
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIKISGY 949 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 949 (1403)
.+.++++++..+... +...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 456777766542100 001256999999999999999999999999999999999976 5 35799999999
Q ss_pred cCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 037155 950 PKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ 1029 (1403)
Q Consensus 950 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1029 (1403)
+......++.++|++|++.+++.+|++||+.+...+. .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765455678999999998889999999997643110 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1030 rqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986457788999999985 7887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=323.65 Aligned_cols=215 Identities=22% Similarity=0.304 Sum_probs=174.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc-e--eEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--IEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g~ 949 (1403)
+.++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|.
T Consensus 8 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 8 IKVKDLSFYY-------------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred EEEEEEEEEE-------------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 5677776543 2346999999999999999999999999999999999975421 1 3799999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCC
Q 037155 950 PKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLP 1020 (1403)
Q Consensus 950 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 1020 (1403)
+... ...++.++|++|++.+++ .|++||+.+....+. ..+..+..+.++++++.+++.+ ..+..
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 147 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS---- 147 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC----
Confidence 7532 234567999999998887 899999987654332 1122333455778899998842 33332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+.
T Consensus 148 -~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~ 224 (259)
T PRK14260 148 -ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFST 224 (259)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEec
Confidence 457999999999999999999999999999999999999999999999865 699999999987 67889999999973
Q ss_pred ----CcEEEEecCC
Q 037155 1101 ----GGRVIYAGPL 1110 (1403)
Q Consensus 1101 ----gG~~~~~g~~ 1110 (1403)
+|++++.|+.
T Consensus 225 ~~~~~G~i~~~~~~ 238 (259)
T PRK14260 225 DESRIGQMVEFGVT 238 (259)
T ss_pred cCCCCceEEEeCCH
Confidence 4899999875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=323.49 Aligned_cols=205 Identities=22% Similarity=0.286 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---------------------KSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHHH
Confidence 3589999999999999999999999999999999999864 5899999998875432
Q ss_pred ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++|++|++. +++..|+++|+.|.....+... .+ ....++.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~--------------------~~--------------~~~~~~~~ 126 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY--------------------DE--------------MHRRVSEA 126 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCH--------------------HH--------------HHHHHHHH
Confidence 2467999999974 6778899999988633211100 00 01124567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||.+..|+.+++ ||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|
T Consensus 127 l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH 201 (269)
T PRK13648 127 LKQVDMLERADYEPNA-----LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201 (269)
T ss_pred HHHcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8899998877777654 99999999999999999999999999999999999999999999987655788888887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++.. +|+|++|++|++++.|+++++.
T Consensus 202 ~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 202 DLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred Cch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 765 5554 9999999999999999988764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=318.45 Aligned_cols=201 Identities=27% Similarity=0.347 Sum_probs=162.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---- 260 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---- 260 (1403)
++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---------------------TSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEEccccchhhH
Confidence 699999999999999999999999999999999999864 5899999998875432
Q ss_pred --ccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 --PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 --~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.++.++|++|++ .+++.+||+||+.+..+..+... +.+.. ....
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~---------------------~~~~~-----------~~~~ 125 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS---------------------KKEAR-----------KEAV 125 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCc---------------------HHHHH-----------HHHH
Confidence 246799999998 46678999999987533221100 00000 0012
Q ss_pred HHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 337 DYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 337 ~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+.+++.+||. +..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 126 LLLLVGVGLPEEVLNRYPHE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHCCCChhHhhCCchh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3567888985 566766654 9999999999999999999999999999999999999999999998765478888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEec
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
++.|++. ++.+.+|+|++|++|+++..|
T Consensus 201 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 8877654 777799999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=314.90 Aligned_cols=197 Identities=26% Similarity=0.357 Sum_probs=162.0
Q ss_pred cccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCC
Q 037155 891 EGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 891 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~ 970 (1403)
..+.++++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+.
T Consensus 28 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~ 96 (224)
T cd03220 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFN 96 (224)
T ss_pred hhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCC
Confidence 34455667899999999999999999999999999999999997653 47999999976421 11122345
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+.+||+||+.+...... ....+.++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||
T Consensus 97 ~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 97 PELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 78999999988654321 223344456788999999988777764 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999877899999999986 56778999999985 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.36 Aligned_cols=205 Identities=25% Similarity=0.389 Sum_probs=170.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---c
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---P 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---~ 261 (1403)
.+|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.++.... .
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---------------------TSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHHHH
Confidence 599999999999999999999999999999999999865 5899999998765422 2
Q ss_pred cceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 QRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 ~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++. .+...||+||+.+.....+.. .+ +....++.++
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~---------------------~~-------------~~~~~~~~~l 122 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD---------------------EE-------------TVAHRVSSAL 122 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCC---------------------HH-------------HHHHHHHHHH
Confidence 357999999963 344679999998754321110 00 0011346688
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||.+..++.+.+ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|++++.|+
T Consensus 123 ~~~~l~~~~~~~~~~-----LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 123 HMLGLEELRDRVPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred HHCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 999999888888765 999999999999999999999999999999999999999999999877557888887766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ++.+.+|+|++|++|++++.|+++++.
T Consensus 198 ~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 198 LD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 54 788899999999999999999998874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=320.72 Aligned_cols=206 Identities=22% Similarity=0.371 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|.++.....
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---------------------DAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999987754332
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.+..+.... ... .+ ....++.+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~---------~~~----------~~--------------~~~~~~~~ 121 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD---------LSA----------EQ--------------REDRANEL 121 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccc---------cCH----------HH--------------HHHHHHHH
Confidence 35799999999999999999999875322110 000 00 01134567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.++++.+ .+.|+|++.|
T Consensus 122 l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH 195 (241)
T PRK10895 122 MEEFHIEHLRDSMGQS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDH 195 (241)
T ss_pred HHHcCCHHHhhcchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEc
Confidence 8889998777776654 999999999999999999999999999999999999999999998865 4788888876
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++ .++.+.+|++++|++|++++.|+++++.
T Consensus 196 ~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 196 NV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 65 4788899999999999999999988764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.44 Aligned_cols=204 Identities=24% Similarity=0.293 Sum_probs=166.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCce---eEEEEEEcCccCCh-----hhhcceeeEeecCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---IEGDIKISGYPKKQ-----ETFARVSGYCEQTDI 968 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~ 968 (1403)
++.+|+|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|.+... ...++.++|++|++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 3569999999999999999999999999999999999754321 37999999987532 234567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPS 1044 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ 1044 (1403)
+++.+|+.||+.+....... ...++..+.++++++.+++.. ..++. +..||||||||++||++|+.+|+
T Consensus 96 ~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPE 168 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999876433211 112333445667777777642 23333 45799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1045 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1045 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 169 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 169 ILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999864 799999999986 57778999999985 789988874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.13 Aligned_cols=207 Identities=25% Similarity=0.265 Sum_probs=166.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCC----hhhhcceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKK----QETFARVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~~~~ 969 (1403)
++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+.. ....++.++|++|++.+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 356999999999999999999999999999999999975421 24799999998753 12345679999999988
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++ .||.||+.+...... ........+.+.++++.+++.+....... ..+..|||||||||+|||+|+.+|+|||||
T Consensus 95 ~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 95 FP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred Cc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 87 899999987643321 11122334557788888887532111111 123479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 171 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 171 EPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999976 699999999986 57888999999985 799988874
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=319.59 Aligned_cols=202 Identities=27% Similarity=0.378 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---------------------KSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999987754322
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.++.+..+.. . ....+.+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------~---------------~~~~~~~ 114 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR----------------------S---------------RKIPDEI 114 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc----------------------h---------------HHHHHHH
Confidence 357999999999999999999998763321100 0 0012344
Q ss_pred HHHcC-CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLG-LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lg-L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.++ +++..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++.+..+.|+|++.
T Consensus 115 l~~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 189 (230)
T TIGR03410 115 YELFPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189 (230)
T ss_pred HHHHHhHHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 55555 55556666654 9999999999999999999999999999999999999999999998764477888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
|++. ++.+++|+|++|++|++++.|+.+++
T Consensus 190 H~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 190 QYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 6654 78889999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=320.92 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=164.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF----- 259 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~----- 259 (1403)
++|+|+|+++++||+++|+|||||||||||++|+|.+++... .+.+|+|.++|+++...
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~----------------~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG----------------IKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcC----------------CCCceEEEECCEecccccccHH
Confidence 589999999999999999999999999999999999865210 12489999999876421
Q ss_pred CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 260 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
..++.++|++|++.+++ +||+||+.|+....+... ..+. ...++..
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~-------------------~~~~--------------~~~~~~~ 130 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKD-------------------KKKL--------------DEIVEQS 130 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCC-------------------HHHH--------------HHHHHHH
Confidence 12467999999988775 899999988643211000 0000 1123445
Q ss_pred HHHcCC----cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 340 LKLLGL----DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 340 l~~lgL----~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++.+|| ++..++.++ .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|
T Consensus 131 l~~~~l~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvi 203 (254)
T PRK14273 131 LKKSALWNEVKDKLNTNAL-----SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTII 203 (254)
T ss_pred HHHhCCchhhHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEE
Confidence 677776 344566654 4999999999999999999999999999999999999999999999853 57877
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.|++. ++.+++|+|++|++|+++..|+++++.
T Consensus 204 i~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 204 IVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 7766554 778899999999999999999988774
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=337.85 Aligned_cols=195 Identities=26% Similarity=0.427 Sum_probs=168.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-------Cc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-------VP 261 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-------~~ 261 (1403)
|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++... ..
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p---------------------~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP---------------------QKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEccccccccccchh
Confidence 89999999999999999999999999999999865 589999999876431 12
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++||+|++.+++.+||+||+.|+.+. . ....++.+++
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------------~-------------------------~~~~~~~~l~ 114 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAK---------------S-------------------------MVAQFDKIVA 114 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhh---------------h-------------------------hHHHHHHHHH
Confidence 57899999999999999999999875210 0 0012456789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|.+
T Consensus 115 ~~gl~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 115 LLGIEPLLDRYPGS-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred HcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 99999888887765 9999999999999999999999999999999999999999999998875578888877655
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 190 -~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 190 -DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred -HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 4888999999999999999999999874
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=325.16 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|++|++|++++|+|||||||||||++|+|.+++ .+|+|.++|.++....
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---------------------QKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEECCccccHH
Confidence 3599999999999999999999999999999999999864 5899999998875432
Q ss_pred -ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 -PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.++.++|++|++. .+..+||+||+.|..+..+.. +. + ....++.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~ 119 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLP----------PI----------E--------------IRKRVDR 119 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHH
Confidence 2467999999975 466789999998864322110 00 0 0113456
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++.
T Consensus 120 ~l~~~gl~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~t 193 (274)
T PRK13644 120 ALAEIGLEKYRHRSPKT-----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYIT 193 (274)
T ss_pred HHHHCCCHHHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 78899999888887765 999999999999999999999999999999999999999999999875 478888887
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++ ..+|+|++|++|++++.|+.+++.
T Consensus 194 H~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 194 HNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 7665 55 569999999999999999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.24 Aligned_cols=221 Identities=22% Similarity=0.288 Sum_probs=175.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 948 (1403)
.++++|+++.+ ++..+|+|+||++++||++||+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~-------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYY-------------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEe-------------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 36677776553 2245999999999999999999999999999999999975431 1369999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN 1023 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1023 (1403)
.+... ...++.++|++|+..+++ .|++||+.+....... .+..+..+.+.++++.+++.+..+...+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 234567999999988887 8999999876433211 1223334567889999998542221111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG- 1101 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~g- 1101 (1403)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999853
Q ss_pred ---cEEEEecCC
Q 037155 1102 ---GRVIYAGPL 1110 (1403)
Q Consensus 1102 ---G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=320.31 Aligned_cols=206 Identities=25% Similarity=0.345 Sum_probs=166.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+... ...++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 56999999999999999999999999999999999975421 247999999987532 2345679999999988
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++ .|++||+.+....... ...+..++.++++++.+++.+..+.... ..+..||||||||++||++|+.+|++|+||
T Consensus 96 ~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr~~la~al~~~p~llllD 171 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSELN-KPGTRLSGGQQQRLCIARALAVEPEVILLD 171 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhhcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 77 8999999886543211 1222334557888999988642111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 172 EPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred CCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999865 799999999986 57788999999985 788888874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=321.28 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=174.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 467888776541 24699999999999999999999999999999999997542 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1019 (1403)
.+... ..+++.++|++|++.+++. |++||+.+....... ...+..++.++++++.+++.+ ..+..
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 165 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHEN--- 165 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCC---
Confidence 87532 2346779999999888886 999999876543211 112223355788899988853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 166 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 --AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred --cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999976 799999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |++++.|+.
T Consensus 242 ~-G~i~~~g~~ 251 (272)
T PRK14236 242 M-GKLVEYGDT 251 (272)
T ss_pred C-CEEEecCCH
Confidence 5 799988874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=354.97 Aligned_cols=207 Identities=27% Similarity=0.343 Sum_probs=173.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.+||++|++.+++.
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 35699999999999999999999999999999999997653 479999999875421 123569999999989999
Q ss_pred CCHHHHHHHHHhhh----CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 973 VTLYESLLYSAWLR----LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 973 lTv~e~l~~~~~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+||+||+.+..... .......++..+.++++++.+||.+..++.++ .|||||||||+||++|+.+|+||||
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllL 169 (510)
T PRK09700 95 LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIM 169 (510)
T ss_pred CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998753211 10001223344568899999999887777654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |++++.|+..+
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 231 (510)
T PRK09700 170 DEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSD 231 (510)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhh
Confidence 9999999999999999999999888999999999986 57788999999985 78999988643
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=322.46 Aligned_cols=195 Identities=22% Similarity=0.288 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.. .++
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~i~~~g~~~~~--~~~ 81 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---------------------SAGELLAGTAPLAE--ARE 81 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCeEEEECCEEHHH--hhC
Confidence 3599999999999999999999999999999999999864 58999999876532 246
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|++.+++.+||+||+.+.... . . ...++.+++.+
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~-----------~---------------~--------------~~~~~~~l~~~ 121 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKG-----------Q---------------W--------------RDAALQALAAV 121 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccc-----------h---------------H--------------HHHHHHHHHHc
Confidence 799999999999989999999874210 0 0 01234578889
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..+..+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++.
T Consensus 122 gl~~~~~~~~~~-----LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~- 195 (257)
T PRK11247 122 GLADRANEWPAA-----LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS- 195 (257)
T ss_pred CChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-
Confidence 998877777655 99999999999999999999999999999999999999999999987655788888776654
Q ss_pred hHHhhcCEEEEEcCCeEEEecChh
Q 037155 424 ETYDLFDDIILISEGQIVYHGPRD 447 (1403)
Q Consensus 424 ~~~~~fD~IilL~~G~iv~~G~~~ 447 (1403)
++.+++|+|++|++|++++.|+.+
T Consensus 196 ~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 196 EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhCCEEEEEECCEEEeecccc
Confidence 677899999999999999988764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=322.11 Aligned_cols=201 Identities=24% Similarity=0.351 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|+++.. ..+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~--~~~ 70 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY---------------------QHGSITLDGKPVEG--PGA 70 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEECCC--CCC
Confidence 4699999999999999999999999999999999999864 58999999987754 234
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|++.+++.+||+||+.+..+..+.. . .+ ....++.+++.+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~ 116 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE----------K----------MQ--------------RLEIAHQMLKKV 116 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCC----------H----------HH--------------HHHHHHHHHHHc
Confidence 6899999999999999999998753221100 0 00 011345678899
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++.
T Consensus 117 gl~~~~~~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~- 190 (255)
T PRK11248 117 GLEGAEKRYIWQ-----LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE- 190 (255)
T ss_pred CChhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-
Confidence 998877777755 99999999999999999999999999999999999999999999986545788888776554
Q ss_pred hHHhhcCEEEEEc--CCeEEEecChh
Q 037155 424 ETYDLFDDIILIS--EGQIVYHGPRD 447 (1403)
Q Consensus 424 ~~~~~fD~IilL~--~G~iv~~G~~~ 447 (1403)
++.+++|+|++|+ +|+++..++.+
T Consensus 191 ~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 191 EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 7888999999998 59999988754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=328.54 Aligned_cols=213 Identities=21% Similarity=0.268 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
..+|+|||++|++||+++|+|+||||||||+++|+|.++++. ..+|+|.++|.++.....
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~------------------~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG------------------RIGGSATFNGREILNLPEKE 90 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC------------------CCCeEEEECCEECCcCCHHH
Confidence 569999999999999999999999999999999999986531 138999999998765432
Q ss_pred -----cceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 262 -----QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 262 -----~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
++.++||+|++ .+.|.+||.+++.+....... ..+.+ ...
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~---------~~~~~------------------------~~~ 137 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG---------MSKAE------------------------AFE 137 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcC---------CCHHH------------------------HHH
Confidence 14799999998 688999999999764322110 00000 011
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 335 VTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 335 ~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.+..+++.+||++..+. . +...+.|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+..+.|+
T Consensus 138 ~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ti 215 (330)
T PRK09473 138 ESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAI 215 (330)
T ss_pred HHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 34567888999764322 2 234566999999999999999999999999999999999999999999999987667788
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|+.. .+.+++|+|++|++|+|++.|+.+++.
T Consensus 216 l~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 216 IMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 87766544 777899999999999999999998875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=323.07 Aligned_cols=215 Identities=21% Similarity=0.317 Sum_probs=172.1
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--C-ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 948 (1403)
.+.++++++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYY-------------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 46777776543 22459999999999999999999999999999999999632 1 02479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC----CcccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK----PLRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1019 (1403)
.+... ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1345679999999988875 999999986543211 11223345577888888874 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 689999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=321.91 Aligned_cols=213 Identities=24% Similarity=0.323 Sum_probs=171.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+.++++++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~-------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFY-------------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 46777776543 234699999999999999999999999999999999997542 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1019 (1403)
.+... ...++.++|++|++.+++. ||.||+.+....+. ... ...+.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2346779999999888775 99999988654332 112 23445788999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-E
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL-M 1098 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l-l 1098 (1403)
+..||||||||++||++|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++ |
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999986 56778999764 5
Q ss_pred ecCcEEEEecCC
Q 037155 1099 KRGGRVIYAGPL 1110 (1403)
Q Consensus 1099 ~~gG~~~~~g~~ 1110 (1403)
+ +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 5899888874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=362.18 Aligned_cols=210 Identities=25% Similarity=0.391 Sum_probs=174.2
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++|+|+++... +++.+|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3588999975421 2346999999999999999999999999999999999976 4 37999999987
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
.. ...+++.++||+|++.++. -|++||+.++. .+.++ +.++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 64 3567889999999998876 59999999862 12232 23566666666543 346778865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
|. .||||||||++|||||+++|+||+||||||+||++++..|++.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 483 G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 AA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred CC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 44 599999999999999999999999999999999999999999999985 4899999999985 5678999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 899999873
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=329.37 Aligned_cols=213 Identities=21% Similarity=0.312 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
.++|+|+|++|++||+++|+|||||||||||++|+|..++.. ..+.+|+|.++|+++...
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~----------------~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE----------------GTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC----------------CCCCceEEEECCEEccccccch
Confidence 359999999999999999999999999999999999875310 013589999999987532
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++||+|++++++ .||+||+.|+....+.. .+ +. .......
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~----------~~----------~~-------------~~~~~~~ 204 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIN----------DR----------KI-------------LEKIVEK 204 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCC----------hH----------HH-------------HHHHHHH
Confidence 23568999999999885 79999999863221100 00 00 0011344
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
.++.++|.+..++.++ +.+..|||||||||+||||++.+|+||+|||||+|||+.+...+.+.|+++.+ +.|+|++.
T Consensus 205 ~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iT 281 (329)
T PRK14257 205 SLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVT 281 (329)
T ss_pred HHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 5677777655555565 45667999999999999999999999999999999999999999999998864 57888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. .+.+.+|+|++|++|++++.|+++++.
T Consensus 282 H~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 282 HSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred CCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 6654 677889999999999999999999874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=319.27 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=171.5
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc--eeEEEEEEcCc
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIKISGY 949 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~ 949 (1403)
.+.++|+++.. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 46677776542 135999999999999999999999999999999999976531 14799999998
Q ss_pred cCChhhh-cceeeEeecCCC--CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC---cccccccCCCCC
Q 037155 950 PKKQETF-ARVSGYCEQTDI--HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP---LRDALVGLPGVN 1023 (1403)
Q Consensus 950 ~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~ 1023 (1403)
+...... ++.++|++|++. +.+..|+.+++.+.+.... ... ..+.++++++.++|.+ ..+.. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7643222 356999999974 4467899999876543221 111 2245788999999976 33443 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 56788999999985 7
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 89988874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=315.51 Aligned_cols=197 Identities=31% Similarity=0.460 Sum_probs=163.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
.++|+|+|+.+++| +++|+|||||||||||++|+|.+++ .+|+|.++|.++.... .
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP---------------------SSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC---------------------CccEEEECCCccccchHHH
Confidence 36999999999999 9999999999999999999999865 5899999998765432 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.+..+..+.. + .+ ....++.+++
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~ 116 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP----------S----------KE--------------VKARVDEVLE 116 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCC----------H----------HH--------------HHHHHHHHHH
Confidence 467999999999999999999998753321100 0 00 0113456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++
T Consensus 117 ~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~ 189 (211)
T cd03264 117 LVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV 189 (211)
T ss_pred HCCCHHHHhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH
Confidence 99999888888765 999999999999999999999999999999999999999999999864 46777766544
Q ss_pred chhHHhhcCEEEEEcCCeEEEec
Q 037155 422 APETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
.++.+++|++++|++|++++.|
T Consensus 190 -~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 190 -EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred -HHHHHhCCEEEEEECCEEEecC
Confidence 4677899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.13 Aligned_cols=201 Identities=24% Similarity=0.375 Sum_probs=166.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
.++|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|.++....
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---------------------TEGSILIDGVDIKTIDVID 74 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEEhhhcChHH
Confidence 3599999999999999999999999999999999998864 5899999998765432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|++.+++ .||+||+.+.....+ .. ...++.++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-----------------------~~---------------~~~~~~~l 115 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG-----------------------EK---------------NVDVEYYL 115 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhcC-----------------------cH---------------HHHHHHHH
Confidence 2467999999988886 699999987432110 00 01234567
Q ss_pred HHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 341 KLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 341 ~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
+.+||+ +..++.+.+ ||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|
T Consensus 116 ~~~~l~~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 116 SIVGLNKEYATRDVKN-----LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred HHcCCCHHHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 889996 456665544 99999999999999999999999999999999999999999999987645788888766
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++.+++|+|++|++|++++.|+++++.
T Consensus 191 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 191 NME-QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cHH-HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 554 778899999999999999999988763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.12 Aligned_cols=214 Identities=26% Similarity=0.310 Sum_probs=171.8
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc--
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-- 950 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~-- 950 (1403)
+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 7 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 71 (258)
T PRK11701 7 LSVRGLTKLY-------------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQ 71 (258)
T ss_pred EEEeeeEEEc-------------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCcccc
Confidence 5677776543 234699999999999999999999999999999999997653 47999999986
Q ss_pred ---CCh---hh----hcceeeEeecCCC--CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccc
Q 037155 951 ---KKQ---ET----FARVSGYCEQTDI--HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALV 1017 (1403)
Q Consensus 951 ---~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v 1017 (1403)
... .. .++.++|++|++. +.+.+|+.||+.+...... .....+....+.++++.+++.+ ..++.
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 148 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL- 148 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC-
Confidence 432 11 2346999999973 5677899999976432211 1112233456788999999963 45544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEE
Q 037155 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1096 (1403)
Q Consensus 1018 g~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ 1096 (1403)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.+|+++
T Consensus 149 ----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~ 223 (258)
T PRK11701 149 ----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLL 223 (258)
T ss_pred ----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 3479999999999999999999999999999999999999999999998765 899999999986 4667899999
Q ss_pred EEecCcEEEEecCC
Q 037155 1097 LMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1097 ll~~gG~~~~~g~~ 1110 (1403)
+|++ |++++.|+.
T Consensus 224 ~l~~-g~i~~~~~~ 236 (258)
T PRK11701 224 VMKQ-GRVVESGLT 236 (258)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899998874
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=314.12 Aligned_cols=195 Identities=26% Similarity=0.399 Sum_probs=166.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSP 971 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 971 (1403)
+.+|+|+||++++|+++||+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 5699999999999999999999999999999999997653 47999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
++|+.||+.+...... ....++..+.++++++.++|.+..+..+ ..||+|||||++||++|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998654321 1233444556889999999987777653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1052 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1052 TsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
|+|||+.++..+.+.|+++.+ .|+|||+++|+++ ..+.||++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999975 4579999999985 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=354.06 Aligned_cols=208 Identities=25% Similarity=0.425 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++++||+.++|+||||||||||+++|+|.++| .+|+|.+||+++.+...
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---------------------~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP---------------------TSGSVRLDGADLKQWDRET 389 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEehhhCCHHH
Confidence 4689999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++. |++||+.+... +.+.++..+++...+ .+..+
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~------~~~~i 437 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFGE-------------------------NADPEKIIEAAKLAG------VHELI 437 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhC------hHHHH
Confidence 5789999999999976 99999975321 001111222222111 12233
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .|++..||.+|+ .++.||||||||++||||++++|++++|||||+|||+.++.++.+.|+++.. .++|+|++.|+
T Consensus 438 ~--~l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~ 513 (544)
T TIGR01842 438 L--RLPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHR 513 (544)
T ss_pred H--hCccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCC
Confidence 3 367788999985 5778999999999999999999999999999999999999999999998753 47899998888
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ..+.+|+|++|++|++++.|+++++.
T Consensus 514 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 514 PS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 74 56789999999999999999998875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.83 Aligned_cols=207 Identities=20% Similarity=0.258 Sum_probs=169.1
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--c-eeEEEEEEcCccCCh-----hhhcceeeEeecCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKKQ-----ETFARVSGYCEQTD 967 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 967 (1403)
+++.+|+|+|++++|||+++|+|+||||||||+++|+|...+ + +.+|+|.++|.+... ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 346799999999999999999999999999999999997542 1 247999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.++ .+|+.||+.+....+. . .....+.++++++.++|.+..+...+ ...+.||||||||++|||||+++|++|+
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 877 5999999988764432 1 12234567889999998643322222 1345799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-------cCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-------RGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-------~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|+ ++|++++.|+.
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 9999999999999999999999964 799999999986 5778999999996 46899999874
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.52 Aligned_cols=201 Identities=23% Similarity=0.301 Sum_probs=169.5
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|++..+ +++.+|+++|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 36677776443 234699999999999999999999999999999999997653 479999999876
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
.....++.++|++|++.+++.+|++||+.+....+. .. ..+.++++++.++|.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344569999999988889999999988654321 11 2234678899999987777654 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
|++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999987 6889999999986
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=316.42 Aligned_cols=196 Identities=21% Similarity=0.347 Sum_probs=162.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++ .+|+|.++|.++.....
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---------------------TSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEEhhhcCHhH
Confidence 4699999999999999999999999999999999999864 58999999988754322
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++|++|++.+++.+||+||+.+........ .. + ....+
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~ 122 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS----------VK----------E--------------AKERA 122 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC----------HH----------H--------------HHHHH
Confidence 256999999998998999999998753221100 00 0 01123
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..++.++. |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+
T Consensus 123 ~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 197 (221)
T TIGR02211 123 YEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLV 197 (221)
T ss_pred HHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5578899998877777755 99999999999999999999999999999999999999999999987655788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEE
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIV 441 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv 441 (1403)
+.|++. ++ +.+|+|++|++|+++
T Consensus 198 ~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 198 VTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred EeCCHH-HH-hhcCEEEEEeCCEec
Confidence 887765 44 457999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=319.72 Aligned_cols=203 Identities=26% Similarity=0.416 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|.++....
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---------------------TSGRIVFDGKDITDWQTAK 76 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---------------------CCceEEECCEecCCCCHHH
Confidence 4699999999999999999999999999999999999864 5899999998875543
Q ss_pred -ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 -PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++|++|++.+++.+||+||+.++..... . .+.+ ...+.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~-------------------~~~~--------------~~~~~~ 120 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE---R-------------------DQFQ--------------ERIKWV 120 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccC---h-------------------hHHH--------------HHHHHH
Confidence 23569999999999999999999987532100 0 0000 012334
Q ss_pred HHHc-CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~l-gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.+ +|.+..++.++ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.
T Consensus 121 l~~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 194 (237)
T PRK11614 121 YELFPRLHERRIQRAG-----TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE 194 (237)
T ss_pred HHHHHHHHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 5555 46655565554 4999999999999999999999999999999999999999999999875 478888876
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++ .++.+.+|++++|++|++++.|+++++.
T Consensus 195 H~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 195 QNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 654 4788999999999999999999998774
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.18 Aligned_cols=210 Identities=23% Similarity=0.340 Sum_probs=173.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC-C-c-eeEEEEEEcCccC---Chhh----hcceeeEeecC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YIEGDIKISGYPK---KQET----FARVSGYCEQT 966 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~-~-~~~G~i~i~g~~~---~~~~----~~~~~gyv~Q~ 966 (1403)
..++++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.++ +.+. ..+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3579999999999999999999999999999999999764 2 3 4568999999864 2221 23579999999
Q ss_pred C--CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 037155 967 D--IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS 1044 (1403)
Q Consensus 967 ~--~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ 1044 (1403)
+ .+.|.+||.+.+.-......... ..++..+++.++|+.+||.+.....-.. +.+|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y--PhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY--PHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC--CcccCCcHHHHHHHHHHHhCCCC
Confidence 7 46788999988876655432211 3455667789999999998753322222 45899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1045 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1045 illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+||.||||++||...+++|+++|+++.+ .|.|+|++|||+. -+.+.||+|.||. .|++++.||..
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE-CcEEEEeCCHH
Confidence 9999999999999999999999999986 6999999999987 4889999999998 58999999963
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=314.95 Aligned_cols=196 Identities=24% Similarity=0.332 Sum_probs=161.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---------------------SAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEcccCChhH
Confidence 4699999999999999999999999999999999999864 5899999998775432
Q ss_pred ---ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 ---PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++.+++.+||+||+.+.....+.. ..+ ....++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------~~~--------------~~~~~~ 119 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGAS--------------------GDD--------------IRRRVS 119 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCC--------------------HHH--------------HHHHHH
Confidence 2467999999998888999999998854322110 000 011234
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
..++.+||++..++.+++ ||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++
T Consensus 120 ~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~ 193 (222)
T PRK10908 120 AALDKVGLLDKAKNFPIQ-----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMA 193 (222)
T ss_pred HHHHHcCChhhhhCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 578889998877777755 999999999999999999999999999999999999999999999865 36777777
Q ss_pred EecCchhHHhhcCEEEEEcCCeEE
Q 037155 418 LLQPAPETYDLFDDIILISEGQIV 441 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv 441 (1403)
.|++. ++...+|+|++|++|+++
T Consensus 194 sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 194 THDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred eCCHH-HHHHhCCEEEEEECCEEc
Confidence 66544 777889999999999985
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=364.99 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.++||+.++|+||||||||||+++|+|.++| .+|+|++||+++++...
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p---------------------~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP---------------------QHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEehhhCCHHH
Confidence 4599999999999999999999999999999999999865 58999999998877653
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++. |+.+.++..+++...+. +..+
T Consensus 529 ~r~~i~~v~q~~~lf~~-ti~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l------~~~i 576 (694)
T TIGR01846 529 LRRQMGVVLQENVLFSR-SIRDNIALCN-------------------------PGAPFEHVIHAAKLAGA------HDFI 576 (694)
T ss_pred HHHhCeEEccCCeehhh-hHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCh------HHHH
Confidence 5789999999988865 9999998742 11112233333332221 1122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .|+++.||.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. .++|+|++.|+
T Consensus 577 ~--~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~ 651 (694)
T TIGR01846 577 S--ELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHR 651 (694)
T ss_pred H--hCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 2 378889999985 477899999999999999999999999999999999999999999999874 47899998887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++ +...+|+|++|++|+++++|+++++.+
T Consensus 652 ~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 652 LS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred hH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 74 567799999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=323.34 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=171.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--C-ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 948 (1403)
.+.++|+++.+ +++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYY-------------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEe-------------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 36777776543 23569999999999999999999999999999999999632 1 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1019 (1403)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 2345679999999888875 99999987643221 1112223445677888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999965 689999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 799998874
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=323.00 Aligned_cols=204 Identities=21% Similarity=0.335 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---------------------TQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEcccccccc
Confidence 4699999999999999999999999999999999999864 5899999998765421
Q ss_pred ----ccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 261 ----PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 261 ----~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
.++.++|++|++ .+++ .||+||+.|.....+.. . .+ ...
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~----------~----------~~--------------~~~ 123 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVS----------Q----------EE--------------AEA 123 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCC----------H----------HH--------------HHH
Confidence 245799999996 3454 69999998753221100 0 00 011
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 335 VTDYVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 335 ~~~~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
.++.+++.+||.. ..+..+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 197 (280)
T PRK13649 124 LAREKLALVGISESLFEKNPFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMT 197 (280)
T ss_pred HHHHHHHHcCCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCE
Confidence 2456788899973 56666654 999999999999999999999999999999999999999999999875 4788
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+|++.|++. ++.+++|++++|++|++++.|+.+++.
T Consensus 198 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 198 IVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 888877654 777899999999999999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=321.41 Aligned_cols=206 Identities=29% Similarity=0.452 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|.++....
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---------------------~~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---------------------DSGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999998754 5899999998765432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|++.+++.+||+||+.+.....+.. . .+ ....++.++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-------------------~-~~--------------~~~~~~~~l 119 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLS-------------------R-AE--------------DDALVAAAL 119 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCC-------------------c-HH--------------HHHHHHHHH
Confidence 2357999999988878899999998853211100 0 00 011245678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV------GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+.+||++..++.+++ |||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++.+..+.|+
T Consensus 120 ~~~~l~~~~~~~~~~-----LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 194 (258)
T PRK13548 120 AQVDLAHLAGRDYPQ-----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194 (258)
T ss_pred HHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 889998878888765 9999999999999999 59999999999999999999999999999874457888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 195 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 195 IVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 88776544 777899999999999999999987764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=335.46 Aligned_cols=199 Identities=26% Similarity=0.443 Sum_probs=169.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-------Cc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-------VP 261 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-------~~ 261 (1403)
|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|.++... ..
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p---------------------~~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP---------------------DEGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECccCccccccchh
Confidence 99999999999999999999999999999999865 589999999876432 12
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.|+.+... ..+ ....++.+++
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~----------------------~~~--------------~~~~~~~~l~ 117 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRAR----------------------PSE--------------RRISFERVIE 117 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccC----------------------hhH--------------HHHHHHHHHH
Confidence 4679999999999999999999988643110 000 0113456789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+.+ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++
T Consensus 118 ~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 118 LLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 99999888888765 9999999999999999999999999999999999999999999998875578888877655
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
. ++..++|+|++|++|++++.|+++++.
T Consensus 193 ~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 193 Q-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred H-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 4 788899999999999999999988774
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.62 Aligned_cols=219 Identities=24% Similarity=0.296 Sum_probs=175.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+..+|+++.+ +++.+|+|||++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGF-------------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEE-------------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 46777776654 235699999999999999999999999999999999997542 13479999999
Q ss_pred ccCCh----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 037155 949 YPKKQ----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024 (1403)
Q Consensus 949 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1024 (1403)
.+... ...++.++|++|++.+++ .|++||+.+...... ....++....+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234667999999988887 899999987643221 12233334456788999998653221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999976 589999999986 57788999999985 899
Q ss_pred EEecCC
Q 037155 1105 IYAGPL 1110 (1403)
Q Consensus 1105 ~~~g~~ 1110 (1403)
++.|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=320.48 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=165.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++.. ..+.+|+|.++|+++...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~----------------~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK----------------NCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCccc----------------CCCcceEEEECCEEcccccchH
Confidence 359999999999999999999999999999999999875310 012589999999876432
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++ +||+||+.|..+..+.. .. +. ...++.
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~----------~~----------~~--------------~~~~~~ 133 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN----------KK----------DL--------------DGVVEN 133 (258)
T ss_pred HHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCC----------HH----------HH--------------HHHHHH
Confidence 12457999999988887 89999998864322110 00 00 012455
Q ss_pred HHHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+|+. +..++.++ .|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+
T Consensus 134 ~l~~~~l~~~~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~ti 206 (258)
T PRK14268 134 ALRSAALWDETSDRLKSPAL-----SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTI 206 (258)
T ss_pred HHHHcCCCcchhhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEE
Confidence 77888873 34555554 4999999999999999999999999999999999999999999999854 6788
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
|++.|++ .++.+++|+|++|++|++++.|+++++
T Consensus 207 iivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 207 VIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8777654 477789999999999999999998876
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.75 Aligned_cols=214 Identities=26% Similarity=0.301 Sum_probs=172.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 949 (1403)
+.++++++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|.
T Consensus 7 i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 7 LSTKNLNLWY-------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred EEEeeeEEEE-------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5677776543 2356999999999999999999999999999999999964321 13799999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCC
Q 037155 950 PKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLP 1020 (1403)
Q Consensus 950 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 1020 (1403)
+... ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+ ..++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 146 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS---- 146 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC----
Confidence 7532 2345679999999988875 999999987544321 122233456788888888753 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~ 223 (253)
T PRK14261 147 -ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC
Confidence 447999999999999999999999999999999999999999999999976 689999999986 57788999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|+++..|+.
T Consensus 224 -G~i~~~g~~ 232 (253)
T PRK14261 224 -GKLIEFDKT 232 (253)
T ss_pred -CEEEEcCCH
Confidence 789988874
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.35 Aligned_cols=207 Identities=23% Similarity=0.345 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.++...
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---------------------DEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEEcccccccc
Confidence 4699999999999999999999999999999999999864 589999999876432
Q ss_pred ------------CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHh
Q 037155 260 ------------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAV 327 (1403)
Q Consensus 260 ------------~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~ 327 (1403)
..++.++|++|++.+++.+||+||+.++.... .+. ...+
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~------------------~~~-~~~~---------- 122 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV------------------LGM-ARAE---------- 122 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh------------------cCC-CHHH----------
Confidence 12467999999999999999999998752110 000 0000
Q ss_pred hccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 328 AGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407 (1403)
Q Consensus 328 ~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~ 407 (1403)
....++.+++.+||++..+..+.+ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.
T Consensus 123 ----~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (252)
T TIGR03005 123 ----AEKRAMELLDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA 193 (252)
T ss_pred ----HHHHHHHHHHHcCChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 011235678889998877776654 99999999999999999999999999999999999999999999987
Q ss_pred HhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 408 HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 408 ~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+..+.|+|++.|++. ++.+++|++++|++|++++.|+.+++.
T Consensus 194 ~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 194 SEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 655778888777654 778899999999999999999988763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=358.58 Aligned_cols=207 Identities=24% Similarity=0.364 Sum_probs=170.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
++|+|+|+.++||+.++|+||||||||||+++|+|+++| .+|+|.+||.++++...
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p---------------------~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP---------------------QSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC---------------------CCCEEEECCEEhhhCCHHHH
Confidence 589999999999999999999999999999999999865 58999999998877643
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++||+|++.+|+. |++|||.++.. +.+.++..+++...+ .+..++
T Consensus 408 r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-------------------------~~~d~~i~~al~~~~------l~~~i~ 455 (588)
T PRK13657 408 RRNIAVVFQDAGLFNR-SIEDNIRVGRP-------------------------DATDEEMRAAAERAQ------AHDFIE 455 (588)
T ss_pred HhheEEEecCcccccc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHHH
Confidence 5789999999998865 99999987521 111111222222111 111122
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.|++..||.+|+ .++.||||||||++|||||+++|++++||||||+||+.++..|.+.|+++. .++|+|++.|++
T Consensus 456 --~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~ 530 (588)
T PRK13657 456 --RKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL 530 (588)
T ss_pred --hCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH
Confidence 377889999986 467799999999999999999999999999999999999999999998874 378999988887
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+..+.+|+|++|++|+++..|+++++.+
T Consensus 531 --~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 531 --STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred --HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 4678899999999999999999998863
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.08 Aligned_cols=202 Identities=28% Similarity=0.338 Sum_probs=165.7
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEE
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCA 266 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~ 266 (1403)
|+|+|+.+++|++++|+||||||||||+++|+|.++| .+|+|.++|+++..... ..+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~--~~~ 57 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---------------------TSGGVILEGKQITEPGP--DRM 57 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEECCCCCh--hhe
Confidence 5799999999999999999999999999999999864 58999999988765332 348
Q ss_pred EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCc
Q 037155 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD 346 (1403)
Q Consensus 267 yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 346 (1403)
|++|++.+++.+||+||+.+..+....+ ..+. + ....++.+++.+||+
T Consensus 58 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~----------~--------------~~~~~~~~l~~~~l~ 105 (230)
T TIGR01184 58 VVFQNYSLLPWLTVRENIALAVDRVLPD--------LSKS----------E--------------RRAIVEEHIALVGLT 105 (230)
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcccC--------CCHH----------H--------------HHHHHHHHHHHcCCH
Confidence 9999999999999999998752100000 0000 0 011245678899999
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~ 426 (1403)
+..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++.
T Consensus 106 ~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~ 179 (230)
T TIGR01184 106 EAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EAL 179 (230)
T ss_pred HHHcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 888887765 99999999999999999999999999999999999999999999987655788888776654 778
Q ss_pred hhcCEEEEEcCCeEEEecChhhH
Q 037155 427 DLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 427 ~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
+.+|+|++|++|+++..|+..++
T Consensus 180 ~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 180 LLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HhcCEEEEEeCCcEecccCceec
Confidence 89999999999999998865543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=319.16 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=165.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|++|++|++++|+||||||||||+++|+|..++. +..|+|.++|.+... ...++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 46999999999999999999999999999999999975431 125999999987532 2346779999999988
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++. |++||+.+....+... ..+...+.++++++.+++.+....... ..+..||||||||++|||+|+.+|++|+||
T Consensus 97 ~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLD 172 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALSGGQQQRLCIARVLAIEPEVILMD 172 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 875 9999999875433211 112233456778888887532111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 173 EPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 173 EPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999999999985 5899999999986 57788999999984 788888874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=350.49 Aligned_cols=207 Identities=25% Similarity=0.330 Sum_probs=173.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 45699999999999999999999999999999999997653 47999999987532 2234679999999988899
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+||+||+.+............++..+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987542111111122334456889999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
+|||+.++..+.+.|+++++.|+|||++||+++ ++.+.||++++|++ |+++..|+...
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 999999999999999999888999999999986 57788999999985 89999988643
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=310.94 Aligned_cols=185 Identities=26% Similarity=0.321 Sum_probs=159.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 35699999999999999999999999999999999998653 47999999987532 335567999999998888999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
++||+.+.... . ..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 90 v~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999875311 1 1234788999999987777654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
||+.++..+++.|+++.++|+|+|++||++. +..+.+++++++
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998877999999999986 577888888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=288.80 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=176.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+|+|||+.|.+||.++++||||||||||||++||+.+| ..|+|.+||.+++.- ..
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P---------------------~~G~i~l~~r~i~gP--ga 74 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---------------------SRGSIQLNGRRIEGP--GA 74 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc---------------------ccceEEECCEeccCC--Cc
Confidence 5699999999999999999999999999999999999976 579999999988753 33
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.-|.|+|++.++|.+||.||+.|+.+++|..+.. | ..+..+.+...
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~-------R---------------------------~~~a~q~l~~V 120 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ-------R---------------------------REIAHQMLALV 120 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHH-------H---------------------------HHHHHHHHHHh
Confidence 4589999999999999999999999988865321 1 12346678899
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..+..|-+ |||||||||.|||||..+|+.|+||||+++||.-|++++.++|-++.+..|+.+.+++ |.-.
T Consensus 121 gL~~~~~~~i~q-----LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT-H~ie 194 (259)
T COG4525 121 GLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT-HDIE 194 (259)
T ss_pred CcccccccceEe-----ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHH
Confidence 999988887765 9999999999999999999999999999999999999999999999888888777655 5566
Q ss_pred hHHhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 424 ETYDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 424 ~~~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
|..-++++++||+. |+|+..-+.+-...
T Consensus 195 EAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 195 EALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred HHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 88889999999986 79998877764333
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=316.97 Aligned_cols=208 Identities=23% Similarity=0.302 Sum_probs=166.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~~ 264 (1403)
+|+|+|+++++|++++|+||||||||||+++|+|.++|.. .+.+|+|.++|+++..... ++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-----------------~~~~G~i~~~g~~~~~~~~~~~~ 63 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGL-----------------TQTSGEILLDGRPLLPLSIRGRH 63 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-----------------CccccEEEECCEechhhhhhhhe
Confidence 5789999999999999999999999999999999986410 0158999999988754333 357
Q ss_pred EEEeccCCC--CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 265 CAYISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 265 ~~yv~Q~d~--~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
++|++|++. +.+.+|++|++.+.....+.. .. +....++.+++.
T Consensus 64 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~ 109 (230)
T TIGR02770 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKL--------------------SK--------------QARALILEALEA 109 (230)
T ss_pred eEEEecCchhhcCcccCHHHHHHHHHHHcCcc--------------------HH--------------HHHHHHHHHHHH
Confidence 999999974 567789999997643211100 00 001134567889
Q ss_pred cCCcc---cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 343 LGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 343 lgL~~---~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
+||++ ..++.+++ |||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++++..++|+|++.|
T Consensus 110 ~~l~~~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 110 VGLPDPEEVLKKYPFQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred cCCCchHHHHhCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99973 45555554 99999999999999999999999999999999999999999999987655778888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++..++|+|++|++|+++..|+.+++.
T Consensus 185 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 185 DLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 654 788899999999999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.67 Aligned_cols=208 Identities=24% Similarity=0.344 Sum_probs=169.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|.++....
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---------------------AQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEEccccCHH
Confidence 35799999999999999999999999999999999999864 5899999998775432
Q ss_pred ----ccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 261 ----PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 261 ----~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
.++.++|++|++ .+++.+||+||+.+...... +. ..+ +...
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~------------------~~--~~~-------------~~~~ 128 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT------------------SL--DES-------------EQKA 128 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc------------------CC--CHH-------------HHHH
Confidence 235799999996 46678999999976422100 00 000 0011
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 335 VTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 335 ~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
.++.+++.+||+ +..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|
T Consensus 129 ~~~~~l~~~gl~~~~~~~~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 129 RIAELLDMVGLRSEDADKLPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 345678899996 566776654 99999999999999999999999999999999999999999999987655788
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+|++.|++. .+.+++|++++|++|++++.|+.+++.
T Consensus 204 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 204 YLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 888776544 777899999999999999999998774
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=307.22 Aligned_cols=179 Identities=25% Similarity=0.323 Sum_probs=150.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCC-CC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDI-HS 970 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~ 970 (1403)
++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35699999999999999999999999999999999997653 47999999987531 134567999999973 23
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
...||+||+.+..... ....++..+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865432 1223344456789999999988777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=348.29 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVA---NPSIIF 1047 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~---~P~ill 1047 (1403)
++||.|.+.|...+. .. ....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777754332 11 124578889999753 3443 34799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 346799999994 57999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=357.30 Aligned_cols=209 Identities=24% Similarity=0.415 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+.+++||.++|+|+||||||||+++|+|.++| .+|+|.+||.++++...
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~---------------------~~G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP---------------------DSGQILLDGHDLADYTLAS 403 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC---------------------CCCeEEECCEeHHhcCHHH
Confidence 4699999999999999999999999999999999999865 58999999998776543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++.. ++.+.++..+++...+ .+..+
T Consensus 404 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~------------------------~~~~~~~i~~~l~~~~------l~~~i 452 (571)
T TIGR02203 404 LRRQVALVSQDVVLFND-TIANNIAYGRT------------------------EQADRAEIERALAAAY------AQDFV 452 (571)
T ss_pred HHhhceEEccCcccccc-cHHHHHhcCCC------------------------CCCCHHHHHHHHHHcC------hHHHH
Confidence 5779999999988865 99999987521 0111222223322222 11112
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .|+++.||.+|+ .++.||||||||++||||++++|+|++||||||+||+.++..|.+.|++.. .++|+|+..|+
T Consensus 453 ~--~lp~gldt~i~~-~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~ 527 (571)
T TIGR02203 453 D--KLPLGLDTPIGE-NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHR 527 (571)
T ss_pred H--hCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehh
Confidence 2 377889999996 467899999999999999999999999999999999999999999999875 36899998887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +..+.+|+|++|++|+++..|+++++.+
T Consensus 528 ~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 528 L--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred h--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 6 5778899999999999999999998853
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=351.33 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=172.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh----hhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE----TFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.+.... ..++.+||++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 3569999999999999999999999999999999999765322479999999876431 123569999999988999
Q ss_pred CCHHHHHHHHHhhhCCC-CCcHHHHHHHHHHHHHHcCCCCcc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 973 VTLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
+||.|++.+........ ....++..+.++++++.++|.+.. ++.+ ..|||||||||+||++|+.+|+||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999998864332111 112233445688999999997654 3433 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+...
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 99999999999999999999888999999999986 57788999999985 78888887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.44 Aligned_cols=218 Identities=24% Similarity=0.400 Sum_probs=171.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.+. +++.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 466777765431 135699999999999999999999999999999999998653 479999999876
Q ss_pred ChhhhcceeeEeecCCCCC--CCCCHHHHHHHHHhhhC-CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 952 KQETFARVSGYCEQTDIHS--PHVTLYESLLYSAWLRL-SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
.....++.++|++|++.+. ...+++|++.+...... ..........+.++++++.++|.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234699999987642 23478888865421100 0011112233457889999999887777644 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889998766 4 7999988
Q ss_pred CCC
Q 037155 1109 PLG 1111 (1403)
Q Consensus 1109 ~~~ 1111 (1403)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.98 Aligned_cols=202 Identities=25% Similarity=0.335 Sum_probs=166.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-- 259 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-- 259 (1403)
..+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|++....
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---------------------~~G~i~~~g~~~~~~~~ 90 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP---------------------TSGEVRVAGLVPWKRRK 90 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---------------------CceEEEECCEEccccch
Confidence 346799999999999999999999999999999999999865 589999999865332
Q ss_pred CccceEEEec-cCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 VPQRTCAYIS-QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 ~~~~~~~yv~-Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++ |++.+++.+||+||+.+.....+... .+ ....++.
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~ 136 (236)
T cd03267 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP--------------------AR--------------FKKRLDE 136 (236)
T ss_pred hhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHH
Confidence 2246799997 55677888999999987543221100 00 0112456
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..|+.+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.
T Consensus 137 ~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 211 (236)
T cd03267 137 LSELLDLEELLDTPVRQ-----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211 (236)
T ss_pred HHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 78889999988988865 9999999999999999999999999999999999999999999998765578888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEec
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
|++. ++.+++|++++|++|++++.|
T Consensus 212 H~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 212 HYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred cCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 7654 778899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=320.80 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++| .+|+|.++|.++.....
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---------------------TGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---------------------CcceEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999987754322
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
+..++|++|++.+++.+||+||+.++........ ....+... ... ..... +....++..
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~---~~~~~~~~---~~~--~~~~~-----------~~~~~~~~~ 137 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTG---LFSGLLKT---PAF--RRAES-----------EALDRAATW 137 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccch---hhhhhccc---ccc--ccchh-----------HHHHHHHHH
Confidence 2358999999999999999999998632110000 00000000 000 00000 011234567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|
T Consensus 138 l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH 212 (255)
T PRK11300 138 LERVGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212 (255)
T ss_pred HHhCChhhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 8889998877877765 99999999999999999999999999999999999999999999987655778888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++.+.+|++++|++|++++.|+.+++.
T Consensus 213 ~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 213 DMK-LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CHH-HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 554 788999999999999999999988763
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=314.25 Aligned_cols=197 Identities=27% Similarity=0.375 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.... .+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~~~~~~~~~-~~ 70 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---------------------TSGEIIFDGHPWTRKD-LH 70 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEeccccc-cc
Confidence 4699999999999999999999999999999999999864 5899999998765322 35
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|++.+++.+||+||+.+.....+. + ...+..+++.+
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~---------------------~-----------------~~~~~~~l~~~ 112 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLGL---------------------P-----------------DSRIDEVLNIV 112 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcCC---------------------C-----------------HHHHHHHHHHc
Confidence 799999999999999999999875322110 0 01234567889
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..|..+++ ||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++.
T Consensus 113 ~l~~~~~~~~~~-----LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~- 185 (223)
T TIGR03740 113 DLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS- 185 (223)
T ss_pred CCcHHHhhhHhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-
Confidence 998888877765 999999999999999999999999999999999999999999999865 4778888877655
Q ss_pred hHHhhcCEEEEEcCCeEEEecChh
Q 037155 424 ETYDLFDDIILISEGQIVYHGPRD 447 (1403)
Q Consensus 424 ~~~~~fD~IilL~~G~iv~~G~~~ 447 (1403)
++.+.+|+|++|++|++++.|+..
T Consensus 186 ~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 186 EVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHhcCEEEEEeCCEEEEecChh
Confidence 778899999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=322.46 Aligned_cols=208 Identities=24% Similarity=0.333 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|... .+|+|.++|.++....
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g------------------~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN------------------PNSKITVDGITLTAKTVWD 81 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCC------------------CCcEEEECCEECCcCCHHH
Confidence 3599999999999999999999999999999999999865311 2499999999875432
Q ss_pred ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++|++|++. .++.+||+||+.|..+..+.. +. + ....++.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~ 127 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP----------RP----------E--------------MIKIVRDV 127 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCC----------HH----------H--------------HHHHHHHH
Confidence 2467999999974 667789999998753221110 00 0 01134567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+.+ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|
T Consensus 128 l~~~~L~~~~~~~~~~-----LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 128 LADVGMLDYIDSEPAN-----LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred HHHCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8899999888877754 99999999999999999999999999999999999999999999987655788888887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++. ++ ..+|++++|++|++++.|+++++.
T Consensus 203 ~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 203 DID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred CHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 765 44 579999999999999999998874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=317.18 Aligned_cols=211 Identities=26% Similarity=0.362 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP---------------------DEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCeEEECCeecCCCCHHH
Confidence 4699999999999999999999999999999999999864 58999999987654322
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++|++|++.+++.+||+||+.++...... .+.... + ...+ +....++.+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~---------~--~~~~-------------~~~~~~~~~ 127 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKS--VFASLF---------F--RLSA-------------EEKDRIEEV 127 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccc--cccccc---------c--ccHH-------------HHHHHHHHH
Confidence 34699999999999999999999885321100 000000 0 0000 011234668
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ |||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|
T Consensus 128 l~~~~l~~~~~~~~~~-----LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH 200 (242)
T TIGR03411 128 LETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEH 200 (242)
T ss_pred HHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEC
Confidence 8999999888877765 999999999999999999999999999999999999999999999865 578887776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
++. ++.+++|+|++|++|++++.|+.+++
T Consensus 201 ~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 201 DME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred CHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 554 78889999999999999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=320.77 Aligned_cols=205 Identities=28% Similarity=0.400 Sum_probs=167.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--C-
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--V- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--~- 260 (1403)
+++|+|+|++|++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++... .
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP---------------------TSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CccEEEECCEECccccchH
Confidence 3599999999999999999999999999999999999864 589999999887421 1
Q ss_pred --ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 --PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++. .+..+||+||+.|+....+. .+.+ ....+.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~----------~~~~------------------------~~~~~~ 119 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL----------SKEE------------------------VEKRVK 119 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC----------CHHH------------------------HHHHHH
Confidence 2467999999962 33356999999875221110 0000 011245
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ ||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++.+ .+.|++++
T Consensus 120 ~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~v 193 (275)
T PRK13639 120 EALKAVGMEGFENKPPHH-----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIIS 193 (275)
T ss_pred HHHHHCCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 678899999888888765 999999999999999999999999999999999999999999999876 37788877
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|.+ .++.+++|+|++|++|++++.|+++++.
T Consensus 194 tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 194 THDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred ecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 6654 4777899999999999999999998874
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=318.51 Aligned_cols=214 Identities=24% Similarity=0.336 Sum_probs=171.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--Cc-eeEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~ 949 (1403)
+.++|+++.+ +.+.+|+|+|++|++||++||+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 5 ISAKDVHLSY-------------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred EEEEeeEEEE-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 5677776543 23469999999999999999999999999999999999754 11 24799999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCC
Q 037155 950 PKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLP 1020 (1403)
Q Consensus 950 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 1020 (1403)
+... ...++.++|++|++.+++ .||+||+.+....... ...+..++.++++++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN---- 144 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC----
Confidence 7531 234567999999988776 7999999876433211 112223345788899999842 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++
T Consensus 145 -~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~ 221 (251)
T PRK14251 145 -AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN 221 (251)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 799999999986 57788999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|+++..|+.
T Consensus 222 -G~i~~~~~~ 230 (251)
T PRK14251 222 -GDLIEAGPT 230 (251)
T ss_pred -CEEEEeCCH
Confidence 788888874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=319.30 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=172.6
Q ss_pred CcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCc---eeEEEEEE
Q 037155 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKI 946 (1403)
Q Consensus 870 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i 946 (1403)
+.-+.++|+++.. +++.+|+|+|++|++||+++|+||||||||||+++|+|..... +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 3357778877653 2346999999999999999999999999999999999974311 23799999
Q ss_pred cCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccc
Q 037155 947 SGYPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALV 1017 (1403)
Q Consensus 947 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 1017 (1403)
+|.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++.. ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987531 2345679999999888775 99999987643321 11 122334677788888742 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1018 g~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999975 799999999986 57889999999
Q ss_pred Ee--------cCcEEEEecCC
Q 037155 1098 MK--------RGGRVIYAGPL 1110 (1403)
Q Consensus 1098 l~--------~gG~~~~~g~~ 1110 (1403)
|+ +.|++++.|+.
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred EecccccccccCceEEEeCCH
Confidence 97 25899999986
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=317.44 Aligned_cols=198 Identities=25% Similarity=0.368 Sum_probs=168.1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+|+||||++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999987532 23345689999998888889999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 1049 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~-------~P~illLD 1049 (1403)
||+.+.... .....+..+.++++++.++|.+..++.+ ..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333456789999999987766654 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 57889999999985 7899988753
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=324.24 Aligned_cols=205 Identities=24% Similarity=0.319 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|++|++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---------------------SEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEeccccccHH
Confidence 4699999999999999999999999999999999999865 5899999998875421
Q ss_pred -ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 -PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.++.++|++|++. .+...||.||+.|+....+.. . .+ ....++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~ 127 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP----------P----------EE--------------IRERVDE 127 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCC----------H----------HH--------------HHHHHHH
Confidence 2467999999974 233469999998864322110 0 00 0113467
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..++.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.
T Consensus 128 ~l~~~gL~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 128 SLKKVGMYEYRRHAPHL-----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHCCCHhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 88999999888888865 9999999999999999999999999999999999999999999998765578988888
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++.. +|++++|++|++++.|+++++.
T Consensus 203 H~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 203 HYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred cChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 7766 4544 9999999999999999998875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=328.62 Aligned_cols=207 Identities=20% Similarity=0.252 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
..+|+|||+.|++||+++|+|+||||||||+++|+|.+++ .+|+|.++|.++....
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---------------------~~G~i~~~g~~l~~~~~~~ 86 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---------------------TGGELYYQGQDLLKADPEA 86 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---------------------CCcEEEECCEEcCcCCHHH
Confidence 5799999999999999999999999999999999999854 5899999999876542
Q ss_pred ---ccceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 ---PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 ---~~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.++.++||+|++ .+.|.+||.+++.+..+.... +.+.+ ....
T Consensus 87 ~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~---------~~~~~------------------------~~~~ 133 (327)
T PRK11308 87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS---------LSAAE------------------------RREK 133 (327)
T ss_pred HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccC---------CCHHH------------------------HHHH
Confidence 246799999997 688999999999765332100 00000 1123
Q ss_pred HHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+..+++.+||+ ...++.+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+
T Consensus 134 ~~~~l~~~gL~~~~~~~~p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~ti 208 (327)
T PRK11308 134 ALAMMAKVGLRPEHYDRYPHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSY 208 (327)
T ss_pred HHHHHHHCCCChHHhcCCCcc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46678999996 366776654 999999999999999999999999999999999999999999999987667787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.| ....+..++|+|++|++|++++.|+.+++.
T Consensus 209 l~iTH-dl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 209 VFISH-DLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEeC-CHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 77655 455777899999999999999999998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=311.07 Aligned_cols=188 Identities=23% Similarity=0.293 Sum_probs=156.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 35699999999999999999999999999999999997653 47999999987532 234567999999998889999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
+.|++.+....+. . ...+.++++++.+||.+..++.+ ..||||||||++||++|+++|++++|||||+|
T Consensus 91 v~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 91 ALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred HHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999988754321 1 12345788999999987777653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
||+.++..+++.|++++++|+|||++||+++ .+...-+|++++
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999877899999999986 344433455444
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=351.11 Aligned_cols=210 Identities=21% Similarity=0.340 Sum_probs=177.7
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 76 (510)
T PRK15439 12 LCARSISKQY-------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCA 76 (510)
T ss_pred EEEEeEEEEe-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5677776543 235699999999999999999999999999999999998653 3799999998753
Q ss_pred h---hh-hcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 953 Q---ET-FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 953 ~---~~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
. .. .++.+||++|++.+++.+||+|++.+.... ..+.++.++++++.++|.+..++.++ .||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVA 144 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCHH
Confidence 2 11 224599999999999999999999875311 12234557899999999887777644 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g 222 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSG 222 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999888999999999986 57788999999985 7899998
Q ss_pred CCC
Q 037155 1109 PLG 1111 (1403)
Q Consensus 1109 ~~~ 1111 (1403)
+..
T Consensus 223 ~~~ 225 (510)
T PRK15439 223 KTA 225 (510)
T ss_pred ChH
Confidence 864
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=317.69 Aligned_cols=202 Identities=23% Similarity=0.316 Sum_probs=163.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--Cc-eeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|+++++||++||+|+||||||||+++|+|... +. ..+|+|.++|.+... ...++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 569999999999999999999999999999999999643 11 137999999987531 2345679999999888
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
++ .|++||+.+....+... ..+..++.+.+.++.+++.. ..+.. +..||||||||++||++|+.+|++
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~l 169 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHES-----ALSLSGGQQQRVCIARVLAVKPDV 169 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 87 69999998865433211 12222344677888887742 22332 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 170 ILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999976 589999999986 57788999999985 789888874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=314.42 Aligned_cols=206 Identities=27% Similarity=0.346 Sum_probs=173.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-cc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQ 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~ 262 (1403)
+++|+|+|++++||++++|+||||||||||+++|+|.+++ .+|+|+++|+++.... .+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP---------------------TSGEILLDGKDITNLPPHK 71 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEEcCcCChhh
Confidence 3699999999999999999999999999999999999865 4799999998776432 24
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++..++.+||+||+.+.....+.. +.. .....+.+++.
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~---------------------~~~-------------~~~~~~~~l~~ 117 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLP---------------------KAE-------------IKERVAEALDL 117 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCC---------------------HHH-------------HHHHHHHHHHH
Confidence 67999999999998999999998754322110 000 01134567889
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..++.+.+ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++.
T Consensus 118 ~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 118 VQLEGYANRKPSQ-----LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred cCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9998888877754 99999999999999999999999999999999999999999999987655788888877664
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.+.+|++++|++|++++.|+.+++.
T Consensus 193 -~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 193 -EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred -HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 678899999999999999999887663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=326.32 Aligned_cols=205 Identities=22% Similarity=0.333 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP---------------------SSGTITIAGYHITPETGNK 78 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEECccccccc
Confidence 4699999999999999999999999999999999999865 589999999876432
Q ss_pred ---CccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 260 ---VPQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
..++.++|++|++. .+..+||+||+.|+.+..+.. +. + ....
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~ 124 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFS----------ED----------E--------------AKEK 124 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCC----------HH----------H--------------HHHH
Confidence 12357999999962 333579999998753321100 00 0 0113
Q ss_pred HHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
++.+++.+||+ +..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tv 198 (287)
T PRK13641 125 ALKWLKKVGLSEDLISKSPFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTV 198 (287)
T ss_pred HHHHHHHcCCChhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 45678899997 567777765 999999999999999999999999999999999999999999999865 47787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.| ...++.+.+|+|++|++|++++.|+.+++.
T Consensus 199 livsH-~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 199 ILVTH-NMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEeC-CHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 77665 455788999999999999999999988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.70 Aligned_cols=205 Identities=23% Similarity=0.318 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++...
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---------------------SEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCeEEEECCEEcccccccc
Confidence 4699999999999999999999999999999999999864 589999999876421
Q ss_pred ------------CccceEEEeccCCCCCCCCCHHHHHHhhcc-cccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHH
Q 037155 260 ------------VPQRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVA 326 (1403)
Q Consensus 260 ------------~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~ 326 (1403)
..++.++|++|++.+++.+||+||+.++.. ..+.. . .+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~----------~~--------- 127 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------QE--------- 127 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H----------HH---------
Confidence 124679999999999999999999987431 11000 0 00
Q ss_pred hhccchhHHHHHHHHHcCCcccc-cccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 327 VAGQETSLVTDYVLKLLGLDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 327 ~~~~~~~~~~~~il~~lgL~~~~-dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
....+..+++.+||++.. +..++ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++
T Consensus 128 -----~~~~~~~~l~~~gl~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (257)
T PRK10619 128 -----ARERAVKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197 (257)
T ss_pred -----HHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011245678899997753 55554 4999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 406 MVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 406 l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+++ .+.|+|++.|++. ++.+++|+|++|++|++++.|+++++.
T Consensus 198 l~~-~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 198 LAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHh-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 875 4788888776554 777899999999999999999988763
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=320.52 Aligned_cols=203 Identities=25% Similarity=0.369 Sum_probs=169.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCC--CC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTD--IH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~ 969 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++ .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 5699999999999999999999999999999999997653 47999999986532 12456799999997 35
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
.+..|+.|++.+..... ......+....++++++.+++. ...+.. +..||||||||++||++|+.+|+||+|
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 67899999987653211 1122334445688999999996 455654 347999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++++.|+..
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~ 237 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVG 237 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChh
Confidence 9999999999999999999999765 899999999986 5777899999998 58999998854
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=287.09 Aligned_cols=208 Identities=22% Similarity=0.333 Sum_probs=176.1
Q ss_pred cccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC-------------h---hhh
Q 037155 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK-------------Q---ETF 956 (1403)
Q Consensus 893 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-------------~---~~~ 956 (1403)
+.++...+||+||+..+.|+.+.|+|.|||||||+|+||.-..++ ..|.|.+||..+. . ...
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 346678899999999999999999999999999999999876553 4799999986431 1 123
Q ss_pred cceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 037155 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA 1036 (1403)
Q Consensus 957 ~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA 1036 (1403)
+...|+|+|...+++++||.||+.-.-.-- ...++.+..++.+..|..+|+.+.+|.+. ..|||||+||++||
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIA 164 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIA 164 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHH
Confidence 445799999999999999999997542211 23455667777899999999999888763 37999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1037 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1037 ~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. .-+...+++.|.+ |.+.+.||+.
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 99999999999999999999999999999999999999999999998763 4566789999985 8999999963
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=319.28 Aligned_cols=196 Identities=24% Similarity=0.392 Sum_probs=154.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 4599999999999999999999999999999999998653 47999999986532 334567999999987764 69
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHH-----HHHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRK-----IFVDEVMELV--ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
|.||+.+... ........ ...++.++.+ ++....+.. +..|||||||||+|||+|+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999987431 11111100 0112333333 333333332 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++ +.||++++|++ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999974 899999999986 34 56999999985 799998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=310.93 Aligned_cols=234 Identities=25% Similarity=0.325 Sum_probs=182.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc-ccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
...+++|||+.+++||+++|+|.|||||||+.++|.|+++ +... ..+|+|.++|.++-....
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~-----------------i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR-----------------IVGGEILFDGKDLLSLSE 79 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCe-----------------EeeeEEEECCcccccCCH
Confidence 4679999999999999999999999999999999999997 4322 268999999997654432
Q ss_pred -------cceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccch
Q 037155 262 -------QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQET 332 (1403)
Q Consensus 262 -------~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~ 332 (1403)
.+.|+||+|++ .+.|.+||.+.+.-..+.+.... ++ .+.
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~------------------------~ea 127 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL--------SK------------------------KEA 127 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch--------hh------------------------HHH
Confidence 26899999996 78899999998865433211000 00 011
Q ss_pred hHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 333 SLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 333 ~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
...+..+|+.+||++-.. +-+.....|||||||||.||.||+.+|++|+.||||++||..++.+|++.|+++.++.+.
T Consensus 128 ~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~ 205 (316)
T COG0444 128 KERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT 205 (316)
T ss_pred HHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCC
Confidence 223456789999986421 122445669999999999999999999999999999999999999999999999987777
Q ss_pred EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHhhcCc
Q 037155 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSK 476 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad~l~ev~s~ 476 (1403)
++|+++ |+-.-+.+++|+|+||+.|+||+.|+.+++. ..|.+.-+...+..+...
T Consensus 206 aiilIT-HDl~vva~~aDri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 206 ALILIT-HDLGVVAEIADRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred EEEEEe-CCHHHHHHhcceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCccc
Confidence 766654 5566788999999999999999999999873 456666555555554443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=310.71 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=162.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccceEEE
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRTCAY 267 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~y 267 (1403)
|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.... .++.++|
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---------------------~~G~i~~~g~~~~~~~~~~~~i~~ 74 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---------------------QSGRVLINGVDVTAAPPADRPVSM 74 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEEcCcCCHhHccEEE
Confidence 99999999999999999999999999999999864 5899999998775433 2467999
Q ss_pred eccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc
Q 037155 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 347 (1403)
++|++.+++.+||+||+.++...... ...+ ....++.+++.+||++
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~--------------------~~~~--------------~~~~~~~~l~~~~l~~ 120 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLK--------------------LTAE--------------DRQAIEVALARVGLAG 120 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccC--------------------ccHH--------------HHHHHHHHHHHcCCHH
Confidence 99999999999999999875321100 0000 0113456788999988
Q ss_pred cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 037155 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYD 427 (1403)
Q Consensus 348 ~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 427 (1403)
..++.+.+ ||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+
T Consensus 121 ~~~~~~~~-----LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~ 194 (211)
T cd03298 121 LEKRLPGE-----LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKR 194 (211)
T ss_pred HHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHh
Confidence 88887754 9999999999999999999999999999999999999999999998765578888876654 47788
Q ss_pred hcCEEEEEcCCeEEEec
Q 037155 428 LFDDIILISEGQIVYHG 444 (1403)
Q Consensus 428 ~fD~IilL~~G~iv~~G 444 (1403)
++|+|++|++|++++.|
T Consensus 195 ~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 195 LAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hhCEEEEEECCEEeecC
Confidence 99999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=349.20 Aligned_cols=212 Identities=28% Similarity=0.439 Sum_probs=176.2
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|++++++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 35899999887631 234699999999999999999999999999999999998664 47999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
.++ ..+++.++||+|++.+++ .|++||+.+.. .+.+. +.+.++++..++.+ -.|+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 643 567889999999998876 59999998752 12222 23566677666643 346677765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
| ..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||++++|++
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 4 46999999999999999999999999999999999999999999999864 899999999985 4678999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 899999973
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=314.11 Aligned_cols=204 Identities=27% Similarity=0.415 Sum_probs=171.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~ 264 (1403)
+|+|+|++++|||+++|+||||||||||+++|+|.++| .+|+|.++|.++.... .++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---------------------~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---------------------DSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---------------------CceEEEECCEEcCcCChhHcC
Confidence 79999999999999999999999999999999999865 5899999998876532 2467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++|++|++.+++.+||+||+.++....+.. ..+. ...++..++.+|
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~--------------------~~~~--------------~~~~~~~l~~~~ 118 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVD--------------------KKEI--------------ERKVLEIAEMLG 118 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCC--------------------HHHH--------------HHHHHHHHHHcC
Confidence 999999999999999999998753221100 0000 112345788899
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|.+..++.+.+ ||||||||++||+|++.+|++++|||||+|||+.++.++.+.|+++++..+.|++++.|++. +
T Consensus 119 l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~ 192 (235)
T cd03299 119 IDHLLNRKPET-----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-E 192 (235)
T ss_pred ChhHHhcCccc-----CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H
Confidence 98888888765 99999999999999999999999999999999999999999999987655788888877664 6
Q ss_pred HHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 425 TYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.+.+|+|++|++|++++.|+.+++.
T Consensus 193 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 193 AWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 78899999999999999999987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=317.38 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.+++... .+.+|+|.++|.++....
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~----------------~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE----------------ARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC----------------CCCceEEEECCEECCcCCHHH
Confidence 3599999999999999999999999999999999999853100 135899999998775432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|++.+++.+||+||+.++.+..+.. .+..+ ....++..+
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~------------------~~~~~--------------~~~~~~~~l 127 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV------------------KSKKE--------------LQERVRWAL 127 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhcccc------------------CCHHH--------------HHHHHHHHH
Confidence 2467999999998888999999998864321100 00000 011245577
Q ss_pred HHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 341 KLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 341 ~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+||.+ ..|+.+. .|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|+
T Consensus 128 ~~~~l~~~~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii 200 (250)
T PRK14247 128 EKAQLWDEVKDRLDAPAG-----KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVL 200 (250)
T ss_pred HHcCCCcchhhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE
Confidence 8888854 3455554 4999999999999999999999999999999999999999999999853 678777
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|++. ++.+.+|+|++|++|++++.|+.+++.
T Consensus 201 ~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 201 VTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 776654 777899999999999999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=320.45 Aligned_cols=215 Identities=22% Similarity=0.245 Sum_probs=170.5
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--C-ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 948 (1403)
.+.++|+++.+ +++.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWY-------------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 36778877643 22459999999999999999999999999999999999753 1 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC----CcccccccC
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK----PLRDALVGL 1019 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1019 (1403)
.+... ..+++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234567999999988877 4999999886533211 11222234567777777543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999975 799999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 037155 1100 RGGRVIYAGPL 1110 (1403)
Q Consensus 1100 ~gG~~~~~g~~ 1110 (1403)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 789888874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=349.02 Aligned_cols=204 Identities=28% Similarity=0.357 Sum_probs=170.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35699999999999999999999999999999999997653 47999999987532 2245679999999989999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+||.||+.+.............+..+.++++++.++|.+..+..+ ..||||||||++||++|+.+|+||||||||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt 168 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPT 168 (501)
T ss_pred CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999988542111111123344456889999999987666654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..++
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 169 SSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 999999999999999999878999999999986 57788999999985 78877665
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=327.22 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=169.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
...+|+|||+.|++||+++|+|+||||||||+++|+|.+++.. .+.+|+|.++|+++.....
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~-----------------~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW-----------------RVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCC-----------------CCcceEEEECCEECCcCCHH
Confidence 3569999999999999999999999999999999999986421 1368999999998765432
Q ss_pred ------cceEEEeccCCC--CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchh
Q 037155 262 ------QRTCAYISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETS 333 (1403)
Q Consensus 262 ------~~~~~yv~Q~d~--~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 333 (1403)
++.++||+|++. +.|.+||.+++.+..+....... ...+.+ +..
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~---------------~~~~~~-------------~~~ 133 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGR---------------WWQRFG-------------WRK 133 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhcccc---------------ccccHH-------------HHH
Confidence 246999999975 67889999999753211000000 000000 001
Q ss_pred HHHHHHHHHcCCcc---cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 037155 334 LVTDYVLKLLGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410 (1403)
Q Consensus 334 ~~~~~il~~lgL~~---~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 410 (1403)
..+..+++.+||++ ..+..+. .|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..
T Consensus 134 ~~~~~~L~~~gL~~~~~~~~~~p~-----~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 134 RRAIELLHRVGIKDHKDAMRSFPY-----ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHCCCCChHHHHhCCch-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 23456889999975 3455554 499999999999999999999999999999999999999999999998756
Q ss_pred CcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 411 DVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 411 ~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|+|++.|. ...+.+++|+|++|++|+|++.|+.+++.
T Consensus 209 g~tii~itHd-l~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHD-LQMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECC-HHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 7787776654 55788899999999999999999998774
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=323.90 Aligned_cols=206 Identities=19% Similarity=0.311 Sum_probs=165.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC----C
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----F 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----~ 259 (1403)
.++|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|.++.. .
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---------------------ETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEEcccccccc
Confidence 3599999999999999999999999999999999999864 58999999987632 1
Q ss_pred ----CccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhH
Q 037155 260 ----VPQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSL 334 (1403)
Q Consensus 260 ----~~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (1403)
..++.++|++|++. .+...||+||+.|+....+.. .. + ...
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------~~----------~--------------~~~ 128 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN----------KQ----------E--------------AYK 128 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCC----------HH----------H--------------HHH
Confidence 12457999999973 222459999998853211100 00 0 011
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 335 VTDYVLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 335 ~~~~il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
.++.+++.+||+ +..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|
T Consensus 129 ~~~~ll~~~~L~~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 203 (289)
T PRK13645 129 KVPELLKLVQLPEDYVKRSPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203 (289)
T ss_pred HHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 235577889995 566776654 99999999999999999999999999999999999999999999987655788
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+|++.|++. ++.+.+|+|++|++|++++.|+.+++.
T Consensus 204 iiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 204 IIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 888776554 778899999999999999999988764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=294.02 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=183.4
Q ss_pred cccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC---hhhhcceeeEeecCC
Q 037155 891 EGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK---QETFARVSGYCEQTD 967 (1403)
Q Consensus 891 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~ 967 (1403)
.++.++.+.+|+++|..|++|.+++|+|||||||||||.++++.... .+|+|.++|.+.. ...+++.++.+-|..
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 34456778899999999999999999999999999999999986653 4799999998864 345677888999988
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.....+||+|-+.|+..-. ..+...++.+..++++++.++|+++.|+... +||||||||.-||+.|+.+.+.++
T Consensus 85 ~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 85 HINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred hhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEE
Confidence 8888999999999975432 2233445666779999999999999999854 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCc
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGR 1112 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~ 1112 (1403)
||||.++||-..+..+|+.|++++++ |+||+++.||.+. ...+.|+++.|++ |+++..|+.++
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 99999999999999999999999866 9999999999875 5567899999985 89999999753
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.19 Aligned_cols=205 Identities=23% Similarity=0.325 Sum_probs=166.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--ce--eEEEEEEcCccCC---hhhhcceeeEeecCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--IEGDIKISGYPKK---QETFARVSGYCEQTDI 968 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~--~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~ 968 (1403)
+++.+|+||||++++||+++|+|+||||||||+++|+|...+ |. +.|++.++|.+.. ....++.++|++|++.
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 346799999999999999999999999999999999997542 21 2366666666542 2234667999999999
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALVGLPGVNGLSTEQRKRLTIAVELVANPS 1044 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ 1044 (1403)
+++.+|++||+.+...... ....++..+.++++++.+++.+ ..+.. +..||+|||||++|||+|+.+|+
T Consensus 101 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999988743321 1122334456788999999964 23332 45799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1045 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1045 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|+.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999865 699999999986 56788999999984 799888874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=314.01 Aligned_cols=202 Identities=22% Similarity=0.369 Sum_probs=164.0
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 8 i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 72 (225)
T PRK10247 8 LQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDIS 72 (225)
T ss_pred EEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcC
Confidence 5677776543 235699999999999999999999999999999999997653 4799999998653
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHH
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1028 (1403)
. ...++.++|++|++.+++ .|++||+.+....+.. . ...+.++++++.+++. ...++. +..||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 141 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSGG 141 (225)
T ss_pred cCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHH
Confidence 2 234567999999988876 4999999876443221 1 1123467899999995 355554 3479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++ +.||++++|.+.+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEeccc
Confidence 999999999999999999999999999999999999999998754 899999999986 34 5699999996333
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=318.31 Aligned_cols=211 Identities=22% Similarity=0.344 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC--C--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE--F-- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~--~-- 259 (1403)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++++. ..+.+|+|.++|+++.. .
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~----------------~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE----------------EARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc----------------CCCCceEEEECCEEccccccCh
Confidence 359999999999999999999999999999999999986520 01248999999987742 1
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++.+||+||+.++....+... +..+. ...++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~------------------~~~~~--------------~~~~~~ 128 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK------------------SKKEL--------------DERVEW 128 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccC------------------CHHHH--------------HHHHHH
Confidence 124679999999999999999999987643211000 00000 012345
Q ss_pred HHHHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+||.. ..++.+ +.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++ ++|+
T Consensus 129 ~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~ti 201 (253)
T PRK14267 129 ALKKAALWDEVKDRLNDYP-----SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTI 201 (253)
T ss_pred HHHHcCCccchhhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEE
Confidence 677778743 344444 44999999999999999999999999999999999999999999999864 5788
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 202 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 202 VLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 88776554 778899999999999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.09 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++....
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---------------------SEGEILLDAQPLESWSSKA 82 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---------------------CCCEEEECCEehhhCCHHH
Confidence 3699999999999999999999999999999999998854 5899999998764332
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|++.+++.+||+||+.++..... .. .+. .... ....++.++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~--------------~~~-~~~~--------------~~~~~~~~l 132 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWH-GA--------------LGR-FGAA--------------DREKVEEAI 132 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCccccc-cc--------------ccC-CCHH--------------HHHHHHHHH
Confidence 24579999999888889999999987532100 00 000 0000 011245678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+
T Consensus 133 ~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 133 SLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred HHcCCHHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 899998878888765 999999999999999999999999999999999999999999999876557788887766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ++.+.+|+|++|++|++++.|+.+++.
T Consensus 208 ~~-~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 208 IN-MAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HH-HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 54 778899999999999999999987753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=350.22 Aligned_cols=212 Identities=27% Similarity=0.425 Sum_probs=174.2
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|++|.++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 36889999887531 224599999999999999999999999999999999998653 47999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1020 (1403)
.++ ..+++.++||+|++.+++ .|++||+.+.. .+.+. +.+.++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 643 457788999999988875 59999998742 12222 235566666665432 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+ .+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .++|+|++||+++ ..+.||++++|++
T Consensus 591 g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 G-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 3 5799999999999999999999999999999999999999999999985 5899999999986 4467999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=313.20 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=164.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+.+++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.....
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---------------------SSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---------------------CCeeEEECCEEcccCCHHH
Confidence 3599999999999999999999999999999999999864 58999999987754322
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++|++|++.+++.+||+||+.+.....+.. ..+ ....+
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~--------------------~~~--------------~~~~~ 127 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES--------------------SRQ--------------SRNGA 127 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCC--------------------HHH--------------HHHHH
Confidence 247999999999999999999998753221100 000 01134
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+
T Consensus 128 ~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 202 (228)
T PRK10584 128 KALLEQLGLGKRLDHLPAQ-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202 (228)
T ss_pred HHHHHHcCCHhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5678899998888877765 99999999999999999999999999999999999999999999987655788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEe
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYH 443 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~ 443 (1403)
+.|++. ++ +.+|++++|++|++++.
T Consensus 203 ~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 203 VTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred EecCHH-HH-HhCCEEEEEECCEEEec
Confidence 887765 45 56999999999999753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.54 Aligned_cols=200 Identities=29% Similarity=0.443 Sum_probs=160.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
.++|+|+|+.+++||+++|+||||||||||+++|+|.++| .+|+|.++|+++. ..++
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---------------------~~G~i~~~g~~~~--~~~~ 68 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---------------------TSGSIRVFGKPLE--KERK 68 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---------------------CCCEEEECCccHH--HHHh
Confidence 4699999999999999999999999999999999999864 5899999998654 2356
Q ss_pred eEEEeccCCCCC--CCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 264 TCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 264 ~~~yv~Q~d~~~--~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.++|++|++.+. ..+||+||+.+....... .+ + ....+ ....++.+++
T Consensus 69 ~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~--~~-------------~-~~~~~--------------~~~~~~~~l~ 118 (213)
T cd03235 69 RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG--LF-------------R-RLSKA--------------DKAKVDEALE 118 (213)
T ss_pred heEEeccccccccCCCCcHHHHHHhccccccc--cc-------------c-CCCHH--------------HHHHHHHHHH
Confidence 799999998653 347999999875321100 00 0 00000 0113456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++
T Consensus 119 ~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~ 192 (213)
T cd03235 119 RVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL 192 (213)
T ss_pred HcCCHHHHhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 99998877877765 999999999999999999999999999999999999999999999876 577888877665
Q ss_pred chhHHhhcCEEEEEcCCeEEEec
Q 037155 422 APETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
. ++.+++|+|++|++| +++.|
T Consensus 193 ~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 193 G-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred H-HHHHhcCEEEEEcCc-EeecC
Confidence 4 778899999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.11 Aligned_cols=207 Identities=24% Similarity=0.310 Sum_probs=165.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcc-eeeEeecCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFAR-VSGYCEQTDIHSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~-~~gyv~Q~~~~~~~l 973 (1403)
+.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+... ....+ .++|++|++.+++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 46999999999999999999999999999999999962111347999999987543 12222 478999999999999
Q ss_pred CHHHHHHHHHhhhCC----CCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 974 TLYESLLYSAWLRLS----SDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
|+.+++.+....... .+....+..+.+.++++.+++. ...++.++ ..||||||||++||++|+.+|+||+|
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llll 175 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAIL 175 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999998765432110 1111223335578899999996 34554432 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|+ +|++++.|+.
T Consensus 176 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~G~i~~~~~~ 236 (252)
T CHL00131 176 DETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-NGKIIKTGDA 236 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-CCEEEEecCh
Confidence 9999999999999999999999877999999999976 34444 89999997 5899999875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=317.99 Aligned_cols=204 Identities=25% Similarity=0.342 Sum_probs=167.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----- 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----- 258 (1403)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|.++..
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---------------------RSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEecccccccc
Confidence 3599999999999999999999999999999999999854 58999999987521
Q ss_pred -C---CccceEEEeccCCCCCCCCCHHHHHHhhc-ccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchh
Q 037155 259 -F---VPQRTCAYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETS 333 (1403)
Q Consensus 259 -~---~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 333 (1403)
. ..++.++|++|++.+++.+||+||+.+.. ...+.. . .+ ..
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~----------~----------~~--------------~~ 119 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLS----------K----------DQ--------------AL 119 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCC----------H----------HH--------------HH
Confidence 1 12457999999999999999999997531 111100 0 00 01
Q ss_pred HHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 334 LVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 334 ~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
..++..++.+||++..++.+++ ||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|
T Consensus 120 ~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 193 (242)
T PRK11124 120 ARAEKLLERLRLKPYADRFPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGIT 193 (242)
T ss_pred HHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCE
Confidence 1345678899998877877754 999999999999999999999999999999999999999999998865 4788
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
++++.|++. ++.+++|++++|++|++++.|+.+++
T Consensus 194 ii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 194 QVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 888776654 77788999999999999999998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=317.70 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+++.. ..+.+|+|+++|+++...
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~----------------~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTID----------------GCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccccc----------------CCCCceEEEECCEECcccccch
Confidence 359999999999999999999999999999999999985310 013689999999877531
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++. ||+||+.|+.+.++... +..+. ...++.
T Consensus 96 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~------------------~~~~~--------------~~~~~~ 142 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLAR------------------SKAEL--------------DEIVET 142 (267)
T ss_pred HHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccccc------------------chHHH--------------HHHHHH
Confidence 124679999999888875 99999988643221100 00000 112456
Q ss_pred HHHHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+||.+ ..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+
T Consensus 143 ~l~~~~l~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~ti 215 (267)
T PRK14235 143 SLRKAGLWEEVKDRLHEPG-----TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTI 215 (267)
T ss_pred HHHHcCCchhhhHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeE
Confidence 778888864 234444 45999999999999999999999999999999999999999999999864 5787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++ .++.+++|++++|++|+++.+|+.+++.
T Consensus 216 iivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 216 VIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 7776654 4777899999999999999999988763
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.25 Aligned_cols=216 Identities=25% Similarity=0.310 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+. +.+|+|.++|.++....
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~------------------~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK------------------SAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC------------------CCceEEEECCEecccccccc
Confidence 469999999999999999999999999999999999987531 13699999998764321
Q ss_pred -----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 -----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 -----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.++.++|++|++.+++.+||+||+.+....... +.... .+. ..++ ....
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~---------~~~~~--~~~-~~~~--------------~~~~ 132 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP---------FWRTC--FSW-FTRE--------------QKQR 132 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhccccc---------chhhh--ccc-ccHH--------------HHHH
Confidence 135699999999999999999999875321000 00000 000 0000 1123
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++.+++.+||++..|..+++ |||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|
T Consensus 133 ~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 207 (262)
T PRK09984 133 ALQALTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVV 207 (262)
T ss_pred HHHHHHHcCCHHHHhCCccc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 46688999998888887765 9999999999999999999999999999999999999999999999765577888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
++.|++. ++.+.+|+|++|++|++++.|+++++
T Consensus 208 i~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 208 VTLHQVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 8776654 67889999999999999999998764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.59 Aligned_cols=210 Identities=21% Similarity=0.339 Sum_probs=171.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++.....
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---------------------AHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999864 58999999987754322
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++.+++.+||+||+.++..-... . . . .. .+. ....++.++
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~-~----~----------~-~~-~~~-------------~~~~~~~~l 128 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQP-L----F----------T-RW-RKE-------------DEEAVTKAM 128 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccc-c----c----------c-CC-CHH-------------HHHHHHHHH
Confidence 35799999999998899999999875210000 0 0 0 00 000 011345678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||++..++.+.+ ||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+
T Consensus 129 ~~~~l~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 129 QATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred HHcCCHHHhcCCccc-----CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 899998877777755 999999999999999999999999999999999999999999999876557788887766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ++.+++|+|++|++|++++.|+.+++.
T Consensus 204 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 204 LN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 54 788999999999999999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=318.85 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
.++|+|+|+.+++||+++|+||||||||||+++|+|.+++ .+|+|.++|.++....
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---------------------FEGKVKIDGELLTAENVWN 78 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCCEEEECCEECCcCCHHH
Confidence 4599999999999999999999999999999999999865 5899999998775422
Q ss_pred ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++|++|++. .++..||.||+.++.+..+.. +. +. ...++.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~----------~~----------~~--------------~~~~~~~ 124 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP----------RE----------EM--------------IKRVDEA 124 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC----------HH----------HH--------------HHHHHHH
Confidence 2467999999973 577789999998753221110 00 00 1134667
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||.+..++.+.. ||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|
T Consensus 125 l~~~~l~~~~~~~~~~-----LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH 199 (277)
T PRK13642 125 LLAVNMLDFKTREPAR-----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199 (277)
T ss_pred HHHCCCHhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8889998877877754 99999999999999999999999999999999999999999999987655788888877
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.. ++. .+|+|++|++|+++..|+.+++.
T Consensus 200 ~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 200 DLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 665 444 69999999999999999988864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.05 Aligned_cols=194 Identities=29% Similarity=0.421 Sum_probs=158.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++....
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---------------------TSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999864 5899999998775432
Q ss_pred ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.++|++|++. .++.+||+||+.++....+.. . .+ .....+.+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~ 118 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP----------E----------EE--------------IEERVEEA 118 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHH
Confidence 2467999999974 466789999998753221100 0 00 01124567
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..++.+++ |||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|
T Consensus 119 l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH 192 (211)
T cd03225 119 LELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTH 192 (211)
T ss_pred HHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 8889998777777765 9999999999999999999999999999999999999999999998764 778888776
Q ss_pred cCchhHHhhcCEEEEEcCCe
Q 037155 420 QPAPETYDLFDDIILISEGQ 439 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~ 439 (1403)
++ .++.+++|+|++|++|+
T Consensus 193 ~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 193 DL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred CH-HHHHHhCCEEEEEeCCC
Confidence 54 47778899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=352.09 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|++++||+.++|+||||||||||+++|+|.++| .+|+|.+||+++.+...
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV---------------------SEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---------------------CCCEEEECCEEHhhCCHHH
Confidence 4689999999999999999999999999999999999865 58999999998766543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++.. +.+.++..+++...+. .+
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~l-----~~--- 432 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGRP-------------------------DATQQEIEHVARLASV-----HD--- 432 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCC-----HH---
Confidence 5779999999998875 99999987521 0011111222221111 01
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
....|+++.||.+|+ .+..||||||||++||||++++|++++|||||++||+.++..+.+.|+++. .++|+|++.|+
T Consensus 433 ~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~ 509 (569)
T PRK10789 433 DILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHR 509 (569)
T ss_pred HHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecc
Confidence 123478889999986 467799999999999999999999999999999999999999999999874 47899998887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +..+.+|+|++|++|+++.+|+++++.+
T Consensus 510 ~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 510 L--SALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred h--hHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 7 4567899999999999999999998863
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=319.91 Aligned_cols=205 Identities=28% Similarity=0.375 Sum_probs=166.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC--C--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE--F-- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~--~-- 259 (1403)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|+++.. .
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---------------------QKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---------------------CccEEEECCEEcccccCCH
Confidence 3599999999999999999999999999999999999865 58999999988642 1
Q ss_pred -CccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 -VPQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..++.++|++|++. .+...|+.||+.+..+..+.. . .+ ....++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~ 118 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVP----------E----------AE--------------ITRRVD 118 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHH
Confidence 12357999999974 344568999998753321110 0 00 011245
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++
T Consensus 119 ~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~v 192 (271)
T PRK13638 119 EALTLVDAQHFRHQPIQC-----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIIS 192 (271)
T ss_pred HHHHHcCCHhHhcCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 678889998888877765 999999999999999999999999999999999999999999999875 47787777
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|++ .++.+++|++++|++|++++.|+.+++.
T Consensus 193 tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 193 SHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred eCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 6654 4777899999999999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=319.32 Aligned_cols=207 Identities=23% Similarity=0.269 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 84 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---------------------TSGELLIDDHPLHFGDYSY 84 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---------------------CCCEEEECCEECCCCchhh
Confidence 4699999999999999999999999999999999999865 58999999987753221
Q ss_pred -cceEEEeccCCC--CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 262 -QRTCAYISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 262 -~~~~~yv~Q~d~--~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
++.++|++|++. +++.+||.|++.+..+.... ... .+ ....++.
T Consensus 85 ~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~---------~~~----------~~--------------~~~~~~~ 131 (267)
T PRK15112 85 RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD---------LEP----------EQ--------------REKQIIE 131 (267)
T ss_pred HhccEEEEecCchhhcCcchhHHHHHHHHHHhccC---------CCH----------HH--------------HHHHHHH
Confidence 356999999874 57788999999875332100 000 00 0113456
Q ss_pred HHHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 339 VLKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 339 il~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
+++.+||. +..++.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++
T Consensus 132 ~l~~~~l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviiv 206 (267)
T PRK15112 132 TLRQVGLLPDHASYYPHM-----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206 (267)
T ss_pred HHHHcCCChHHHhcCchh-----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 78999994 566766654 999999999999999999999999999999999999999999999876557788887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|++ .++..++|++++|++|++++.|+.+++.
T Consensus 207 sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 207 TQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred eCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 7665 4778899999999999999999988764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=329.95 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=189.0
Q ss_pred cccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCC
Q 037155 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDI 968 (1403)
Q Consensus 893 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~ 968 (1403)
+.++..++|+||||++++||++||+|.||||||||+|+|+|...+ .+|+|.++|.+... .....-|+.|.|+..
T Consensus 16 K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 16 KSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred EEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 345567899999999999999999999999999999999997653 48999999987642 233456899999999
Q ss_pred CCCCCCHHHHHHHHHhhhC-CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRL-SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+.|++||.||+.++...+. ..-.+.++..+...++|+.+++....++.++ .||+||||.|.|||||..+++||+
T Consensus 94 L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 94 LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999988765544 2335666777788999999999644666665 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC-Cc-chhHHHHHHH
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL-GR-ESHKLIEYFE 1122 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~-~~-~~~~~~~~f~ 1122 (1403)
||||||.|+......+.+.+++++++|.+||++||.++ ++++.|||+.||.+ |+.+...+. .+ ...++++..-
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRLMV 243 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999997 89999999999985 899988883 43 4456666654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=315.45 Aligned_cols=213 Identities=20% Similarity=0.274 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++... .+.+|+|.++|.++...
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~----------------~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI----------------ARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC----------------CCcceEEEECCEEcccccCCh
Confidence 4699999999999999999999999999999999999853100 13689999999887532
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++ .||+||+.++.+..+. ....+ ....++.
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~-------------------~~~~~--------------~~~~~~~ 142 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGV-------------------KDKKV--------------LDEIVET 142 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCC-------------------CCHHH--------------HHHHHHH
Confidence 12467999999988887 5999999886332110 00000 0112345
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||.+..+...+ ...+.||||||||++|||||+.+|++++|||||+|||+.++.++.+.|+++.+ +.|+|++.
T Consensus 143 ~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~t 219 (267)
T PRK14237 143 SLKQAALWDQVKDDLH-KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVT 219 (267)
T ss_pred HHHHcCCCchhhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 6778888543222221 23455999999999999999999999999999999999999999999999853 57877777
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 220 H~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 220 HNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred cCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 6654 788999999999999999999998763
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=311.98 Aligned_cols=201 Identities=24% Similarity=0.412 Sum_probs=168.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cceEEE
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QRTCAY 267 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~y 267 (1403)
|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++..... ++.++|
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP---------------------ASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCeecCcCChhhccEEE
Confidence 89999999999999999999999999999999864 58999999987654322 467999
Q ss_pred eccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc
Q 037155 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 347 (1403)
++|++.+++.+||+||+.+.... ... ...+ ....++.+++.+||++
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~-~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~ 121 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNP-GLK-------------------LNAA--------------QREKLHAIARQMGIED 121 (232)
T ss_pred EecccccccCCcHHHHHhccccc-ccC-------------------CCHH--------------HHHHHHHHHHHcCcHH
Confidence 99999999999999999875321 000 0000 0113456788999998
Q ss_pred cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 037155 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYD 427 (1403)
Q Consensus 348 ~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 427 (1403)
..++.+.+ ||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.+
T Consensus 122 ~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~ 195 (232)
T PRK10771 122 LLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAAR 195 (232)
T ss_pred HHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHH
Confidence 88888865 99999999999999999999999999999999999999999999987655788888776655 7788
Q ss_pred hcCEEEEEcCCeEEEecChhhHH
Q 037155 428 LFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 428 ~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.+|+|++|++|++++.|+.+++.
T Consensus 196 ~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 196 IAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.21 Aligned_cols=202 Identities=28% Similarity=0.327 Sum_probs=163.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc-----CCh---hh----hcceeeEeec
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-----KKQ---ET----FARVSGYCEQ 965 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~-----~~~---~~----~~~~~gyv~Q 965 (1403)
+.+|+|+|++|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+ ... .. .++.++|++|
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 4689999999999999999999999999999999998653 47999999875 321 11 2346899999
Q ss_pred CCC--CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 037155 966 TDI--HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVAN 1042 (1403)
Q Consensus 966 ~~~--~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~ 1042 (1403)
++. +.+.+|+.|++.+...... ........+.++++++.+++.+ ..++. +..|||||||||+|||||+.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhcC
Confidence 874 4466799999875432111 0111233456789999999963 55554 347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1043 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1043 P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999998754 899999999986 56778999999985 789988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=312.92 Aligned_cols=206 Identities=28% Similarity=0.414 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+++.+||+++|+||||||||||+++|+|.+++ .+|+|.++|.++..... +
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---------------------~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---------------------DSGRIRLNGQDATRVHARD 71 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEEcCcCChhh
Confidence 3699999999999999999999999999999999999864 58999999987754332 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|++|++.+++.+|++||+.+..+..+.. .. . .....+.+++.
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~---------------------~~--~-----------~~~~~~~~l~~ 117 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP---------------------KA--K-----------IKARVEELLEL 117 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCC---------------------HH--H-----------HHHHHHHHHHH
Confidence 67999999999999999999998764321100 00 0 00123567888
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
++|....++.+++ ||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++..++|++++.|++.
T Consensus 118 ~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 118 VQLEGLGDRYPNQ-----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred cCCHhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9998777777765 99999999999999999999999999999999999999999999987644788888887664
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.+++|+|++|++|++++.|+.+++.
T Consensus 193 -~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 193 -EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred -HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 778899999999999999999988764
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=350.78 Aligned_cols=207 Identities=23% Similarity=0.358 Sum_probs=168.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---c
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---P 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---~ 261 (1403)
++|+|+|+.+++|+.++|+||||||||||+++|+|.++| .+|+|.+||.++.+.. .
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---------------------~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---------------------TVGQILIDGIDINTVTRESL 407 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---------------------CCCEEEECCEEhhhCCHHHH
Confidence 589999999999999999999999999999999999865 5899999999877654 3
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++||+|++.+++ .|++|||.++.. +.+.++..+++...+. .+.+
T Consensus 408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-------------------------~~~~~~~~~a~~~~~~-----~~~i-- 454 (585)
T TIGR01192 408 RKSIATVFQDAGLFN-RSIRENIRLGRE-------------------------GATDEEVYEAAKAAAA-----HDFI-- 454 (585)
T ss_pred HhheEEEccCCccCc-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc-----HHHH--
Confidence 578999999998886 599999987521 0011122222221111 1112
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
..+++..||.+|+ .+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. .++|+|++.|++
T Consensus 455 -~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~ 530 (585)
T TIGR01192 455 -LKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL 530 (585)
T ss_pred -HhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh
Confidence 2367788999985 467799999999999999999999999999999999999999999998874 378999888877
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. ..+.+|+|++|++|+++..|+++++.+
T Consensus 531 ~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 531 S--TVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred H--HHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 3 457799999999999999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=317.98 Aligned_cols=217 Identities=21% Similarity=0.266 Sum_probs=170.5
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--c-eeEEEEEEcCc
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGY 949 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~ 949 (1403)
+.++|+++.+ +++.+|+|+|++|++||++||+|+||||||||+++|+|.... . +.+|+|.++|.
T Consensus 11 l~i~~v~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 11 LRTENLNVYY-------------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred EEEeeeEEEE-------------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 5677776543 234699999999999999999999999999999999996431 1 24799999998
Q ss_pred cCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 037155 950 PKK-----QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024 (1403)
Q Consensus 950 ~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1024 (1403)
+.. ....++.++|++|++.+++ .|+.||+.+....+. .. ....+.++++++.+++.+..+.... ..+..
T Consensus 78 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~ 151 (264)
T PRK14243 78 NLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGLS 151 (264)
T ss_pred EccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCccc
Confidence 652 2234567999999988877 499999988654321 11 1223446677888887431111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec----
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR---- 1100 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~---- 1100 (1403)
||||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++
T Consensus 152 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~ 229 (264)
T PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTE 229 (264)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999976 589999999986 68899999999972
Q ss_pred ----CcEEEEecCC
Q 037155 1101 ----GGRVIYAGPL 1110 (1403)
Q Consensus 1101 ----gG~~~~~g~~ 1110 (1403)
.|++++.|+.
T Consensus 230 ~~~~~g~i~~~~~~ 243 (264)
T PRK14243 230 GGGRYGYLVEFDRT 243 (264)
T ss_pred ccccCceEEEeCCH
Confidence 4899999874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=299.19 Aligned_cols=157 Identities=29% Similarity=0.458 Sum_probs=141.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCCH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 4599999999999999999999999999999999997653 47999999987542 2345679999999988888999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
.|++. ||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
|+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|++|
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999877899999999986 577789999999863
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=314.21 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QR 263 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~ 263 (1403)
++|+|+|+++++||+++|+||||||||||+++|+|.+++.. .+.+|+|.++|+++..... ++
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-----------------~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-----------------RQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------------CCcCCEEEECCeeccccccccc
Confidence 58999999999999999999999999999999999986520 1258999999987753322 35
Q ss_pred eEEEeccCCC--CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 264 TCAYISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 264 ~~~yv~Q~d~--~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.++||+|++. +.+.+|+.+++.+.++..+.. .+ ...++.+++
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~---------------~~~~~~~l~ 123 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKP---------------------AD---------------DATLTAALE 123 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCC---------------------hH---------------HHHHHHHHH
Confidence 7999999974 456679999986642211100 00 012355788
Q ss_pred HcCCcc---cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 342 LLGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 342 ~lgL~~---~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
.+||.+ ..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.
T Consensus 124 ~~~l~~~~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 124 AVGLENAARVLKLYPFE-----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred HcCCCChhhhhhcCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 889876 34555554 9999999999999999999999999999999999999999999998765577888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++.+.+|++++|++|++++.|+.+++.
T Consensus 199 H~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 199 HDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred cCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 6554 677899999999999999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=318.35 Aligned_cols=209 Identities=24% Similarity=0.399 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++....
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---------------------QSGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---------------------CCcEEEECCEEhHHCCHHH
Confidence 4699999999999999999999999999999999999754 5899999998764432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|+..+++.+||.||+.++..-.. ..+ +. ...+ ....++.++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~--~~~-------------~~-~~~~--------------~~~~~~~~l 123 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWL--SLW-------------GR-LSAE--------------DNARVNQAM 123 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhh--hhc-------------cC-CCHH--------------HHHHHHHHH
Confidence 23569999999988888999999988531000 000 00 0000 011245678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||++..++.+++ |||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+
T Consensus 124 ~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~ 197 (255)
T PRK11231 124 EQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHD 197 (255)
T ss_pred HHcCCHHHHcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Confidence 889998888887765 999999999999999999999999999999999999999999999865 47788887766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ++.+++|++++|++|++++.|+.+++.
T Consensus 198 ~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 198 LN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 54 788999999999999999999987763
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=315.47 Aligned_cols=208 Identities=23% Similarity=0.304 Sum_probs=162.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF----- 259 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~----- 259 (1403)
++|+|+|+.+++||+++|+|||||||||||++|+|..+.. +..+.+|+|.++|+++...
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----------------~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI----------------PGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccC----------------CCCCCceEEEECCEEccccccCHH
Confidence 5999999999999999999999999999999999986310 0012589999999877531
Q ss_pred CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 260 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
..++.++|++|++.+++ .||+||+.++....+... ..+ ....++..
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~ 129 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKD-------------------KAY--------------LAERVERS 129 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCC-------------------HHH--------------HHHHHHHH
Confidence 12467999999998887 599999988643221100 000 01123456
Q ss_pred HHHcCCccc----ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 340 LKLLGLDIC----ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 340 l~~lgL~~~----~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++.+||.+. .+..+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|
T Consensus 130 l~~~~l~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvi 202 (253)
T PRK14242 130 LRHAALWDEVKDRLHESA-----LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTII 202 (253)
T ss_pred HHHcCCchhhhHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEE
Confidence 777787542 34444 45999999999999999999999999999999999999999999999853 67888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.|++. ++.+++|+|++|++|++++.|+++++.
T Consensus 203 i~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 203 IVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 7776554 778899999999999999999988763
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=309.23 Aligned_cols=186 Identities=28% Similarity=0.380 Sum_probs=156.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+......++.++|++|++.+++.+|+.
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 35699999999999999999999999999999999997653 4799999998653222566789999998888899999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
||+.+....+. .. .+.++++++.+||.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 92 ~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 92 ENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred HHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99987653321 11 123788999999987666543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+.+...+++.|++++++|+|||++||+++ ++. . |+++.+.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 160 AAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999998877999999999975 344 3 8887774
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=315.28 Aligned_cols=207 Identities=20% Similarity=0.308 Sum_probs=163.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF----- 259 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~----- 259 (1403)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++.. ..+.+|+|.++|+++...
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p----------------~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYP----------------EQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCC----------------CCCcceEEEECCEEccccccchH
Confidence 59999999999999999999999999999999999975210 013589999999876421
Q ss_pred CccceEEEeccCCCCCCCCCHHHHHHhhcccc-cccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++ +||+||+.+..+.. +.. . .+. ...++.
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~----------~----------~~~--------------~~~~~~ 135 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLS----------R----------AEM--------------DERVEW 135 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCC----------H----------HHH--------------HHHHHH
Confidence 12467999999988887 79999998754321 100 0 000 112455
Q ss_pred HHHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+||. +..+..+ ..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+
T Consensus 136 ~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~ti 208 (260)
T PRK10744 136 ALTKAALWNEVKDKLHQSG-----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTV 208 (260)
T ss_pred HHHHcCCChhhHHHHhcCC-----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeE
Confidence 77888874 2344444 44999999999999999999999999999999999999999999999853 5787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++ .++.+++|++++|++|+++..|+.+++.
T Consensus 209 ii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 209 VIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 7776655 4777899999999999999999988764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=313.85 Aligned_cols=212 Identities=19% Similarity=0.291 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. .+.+|+|.++|+++.+..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------------------~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI------------------AKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC------------------CCCceEEEECCEecccCCHHH
Confidence 46999999999999999999999999999999999987421 136899999999876432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|++.+++ .||+||+.++.+.++.. ...+. ....++.++
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-------------------~~~~~-------------~~~~~~~~l 123 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-------------------KNKDE-------------EEALVVDCL 123 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-------------------cChHH-------------HHHHHHHHH
Confidence 2467999999998887 69999998864322110 00000 011235578
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||........ +...+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|++++.|+
T Consensus 124 ~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~ 200 (246)
T PRK14269 124 QKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHN 200 (246)
T ss_pred HHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecC
Confidence 8888853211111 122355999999999999999999999999999999999999999999999853 6787777665
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+ .++.+.+|+|++|++|++++.|+.+++.
T Consensus 201 ~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 201 M-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred H-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 5 4778899999999999999999988763
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.77 Aligned_cols=209 Identities=19% Similarity=0.303 Sum_probs=163.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+.+|+|.++|+++...
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p----------------~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP----------------NVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCC----------------CCCCceEEEECCEEccccccCH
Confidence 359999999999999999999999999999999999875210 001489999999876421
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++. ||+||+.|..+..+.. .+.+. ...++.
T Consensus 89 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~~~ 134 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTK-------------------NKKKL--------------QEIVEK 134 (259)
T ss_pred HHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCC-------------------CHHHH--------------HHHHHH
Confidence 124679999999988875 9999998753321100 00000 012345
Q ss_pred HHHHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+||.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. ++|+
T Consensus 135 ~l~~~~l~~~~~~~l~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~ti 207 (259)
T PRK14274 135 SLKDVALWDEVKDRLHTQA-----LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTI 207 (259)
T ss_pred HHHHcCCchhhhhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEE
Confidence 677777753 234444 45999999999999999999999999999999999999999999999853 6788
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++. ++.+.+|++++|++|+++.+|+++++.
T Consensus 208 iivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 208 VIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 88777654 778899999999999999999998763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=313.58 Aligned_cols=207 Identities=19% Similarity=0.280 Sum_probs=163.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc--ccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH--ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-- 259 (1403)
+++|+|+|+.+++|++++|+||||||||||+++|+|... +. .+.+|+|.++|+++...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~------------------~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA------------------TRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC------------------CCCceEEEECCEecccccc
Confidence 469999999999999999999999999999999999731 10 01479999999887542
Q ss_pred ---CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 260 ---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..++.++|++|++.+++ .||+||+.++.+..+.. +.+. ....+
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~--------------------~~~~-------------~~~~~ 123 (250)
T PRK14245 78 QVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVK--------------------DNAF-------------IRQRV 123 (250)
T ss_pred cHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCC--------------------cHHH-------------HHHHH
Confidence 12457999999988887 59999998764322110 0000 01124
Q ss_pred HHHHHHcCCccc----ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 337 DYVLKLLGLDIC----ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 337 ~~il~~lgL~~~----~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
+.+++.+||.+. .+..+ +.||||||||++|||||+.+|++++|||||+|||+.++.++.+.|+++.+ ++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~ 196 (250)
T PRK14245 124 EETLKGAALWDEVKDKLKESA-----FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DY 196 (250)
T ss_pred HHHHHHcCCCcchhhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC
Confidence 567788888643 34444 45999999999999999999999999999999999999999999999853 67
Q ss_pred EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|+|++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 197 tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 197 TIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred eEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 8877766554 778899999999999999999998874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=313.97 Aligned_cols=215 Identities=25% Similarity=0.291 Sum_probs=168.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++. ++.+|+|.++|+++.....
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-------------------~~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY-------------------EVTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-------------------CCCcceEEECCEecCCCCHHH
Confidence 4699999999999999999999999999999999998520 1368999999987754332
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
+..++|++|++.+++.+|++|++.+..+.... .. .+ ...+..+ ....++.+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~---------~~-~~------~~~~~~~-----------~~~~~~~~ 126 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRS---------AR-GE------EPLDLLD-----------FLKLLKAK 126 (243)
T ss_pred hhccceEeeeccccccCCcCHHHHHHHHHHHhhc---------cc-cc------ccccHHH-----------HHHHHHHH
Confidence 23489999999999999999999875322100 00 00 0000000 01234667
Q ss_pred HHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.+||+ ...++.++ ..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.
T Consensus 127 l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vs 201 (243)
T TIGR01978 127 LALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIIT 201 (243)
T ss_pred HHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEE
Confidence 8999997 45666654 13999999999999999999999999999999999999999999999865 577888877
Q ss_pred ecCchhHHhh-cCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDL-FDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~-fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++... +|++++|++|++++.|+++++.
T Consensus 202 H~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 202 HYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred ecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 7664 66666 7999999999999999987653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=355.89 Aligned_cols=211 Identities=27% Similarity=0.450 Sum_probs=175.1
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++|+|++|.++. ++++|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 45899999887631 46799999999999999999999999999999999997764 47999999987
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 037155 951 KK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-------KPLRDALVGLP 1020 (1403)
Q Consensus 951 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~ 1020 (1403)
++ ...+++.++||+|++.++. -||+||+.++.. +.++++ ++++++..++ .+..|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 64 4567889999999999887 899999998731 222222 3444444332 33468888854
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
| ..||||||||++||||+++||+||+||||||+||+.+...|++.++++. +++|+|+++|+++ ....+|+|++|++
T Consensus 463 G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 G-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred C-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999999887 5789999999986 3455999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 789999974
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=312.72 Aligned_cols=209 Identities=19% Similarity=0.306 Sum_probs=164.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|..++.. ..+.+|+|.++|+++....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~----------------~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS----------------NVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccc----------------CCCCccEEEECCEecccccccH
Confidence 359999999999999999999999999999999999875310 0125899999998875321
Q ss_pred --ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 --PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.++.++|++|++.+++ +||+||+.|..+..+... ..+ ....++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~ 126 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKD-------------------KKE--------------LDKIVEW 126 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCc-------------------HHH--------------HHHHHHH
Confidence 2467999999998887 899999988643221100 000 0112345
Q ss_pred HHHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+||. +..+..+ +.||||||||++||+|++.+|++++|||||+|||+.++.++.+.|+++.+ +.|+
T Consensus 127 ~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~ti 199 (251)
T PRK14270 127 ALKKAALWDEVKDDLKKSA-----LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTI 199 (251)
T ss_pred HHHHcCCchhhhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeE
Confidence 67777774 2344444 45999999999999999999999999999999999999999999999865 4787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++ .++.+.+|+|++|++|++++.|+.+++.
T Consensus 200 iivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 200 VIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 7777665 4778899999999999999999998864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=316.50 Aligned_cols=209 Identities=28% Similarity=0.422 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++ .+|+|.++|+++.....
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---------------------DAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---------------------CCCEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999864 58999999987755332
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++.+++.+||+||+.++..... +. .+. +..+ ....++..+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---------~~------~~~-~~~~--------------~~~~~~~~l 122 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHR---------SL------WAG-DSPH--------------DAAVVDRAL 122 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhh---------hh------ccC-CCHH--------------HHHHHHHHH
Confidence 3569999999877888999999987521000 00 000 0000 011245678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.+||.+..++.+++ ||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|+
T Consensus 123 ~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~ 196 (256)
T TIGR03873 123 ARTELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHD 196 (256)
T ss_pred HHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 889998877877765 999999999999999999999999999999999999999999999865 47788887776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ++.+++|+|++|++|+++..|+.+++.
T Consensus 197 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 197 LN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 55 778899999999999999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=316.15 Aligned_cols=195 Identities=25% Similarity=0.332 Sum_probs=156.2
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 599999999999999999999999999999999998653 47999999976532 334567999999988776 699
Q ss_pred HHHHHHHHhhhCCCCCcHHHH-----HHHHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 976 YESLLYSAWLRLSSDVDTKKR-----KIFVDEVMELV--ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~-----~~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+||+.+.... ...... ...+++.++.+ ++.+..+.. +..||+|||||++||++|+.+|++++|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 111111 11234445544 454444433 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++. .||++++|++ |++++.|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-CeEeeeCCH
Confidence 999999999999999999999964 899999999986 454 5999999985 788888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=347.29 Aligned_cols=210 Identities=26% Similarity=0.409 Sum_probs=172.0
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++|.++.. +++.+|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 58999998876421 124699999999999999999999999999999999997664 479999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1021 (1403)
++ ..+++.++||+|++.+++ .|++||+.++. .+.+ ++.+.++++..++.+. .|+.+|..|
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 43 456788999999998875 69999998753 1222 2336677777776543 466677543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..||||||||++|||||+++|+||+||||||+||++++..+++ .. ...++|+|+++|+++ ..+.+|++++|++
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999998 22 235899999999985 5678999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 899999974
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=317.85 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=169.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++. +...+|+|||++|++||+++|+|+||||||||+++|+|... .+|+|.++|.+..
T Consensus 3 i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 567777665421 22459999999999999999999999999999999999864 2699999998763
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccC------CCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL------PGVN 1023 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~~ 1023 (1403)
. ...++.++||+|++.+++. |++||+.... ... .+.++++++.+||.+..+...+. ++..
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 2 3456789999999998874 9999996321 111 12367788899997665554321 1234
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
.||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++ .+ ..||++++|++ |+
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G~ 213 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-NK 213 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-Ce
Confidence 599999999999999999999999999999999999999999999875 4899999999985 34 45999999985 79
Q ss_pred EEEecCCC
Q 037155 1104 VIYAGPLG 1111 (1403)
Q Consensus 1104 ~~~~g~~~ 1111 (1403)
+++.|++.
T Consensus 214 i~~~g~~~ 221 (275)
T cd03289 214 VRQYDSIQ 221 (275)
T ss_pred EeecCCHH
Confidence 99998853
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=313.71 Aligned_cols=206 Identities=23% Similarity=0.296 Sum_probs=166.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--C-ceeEEEEEEcCccCCh-----hhhcceeeEeecCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIH 969 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 969 (1403)
+.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|.+... ...++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 569999999999999999999999999999999999642 1 1247999999987532 2345679999999888
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++. |+.||+.+...... ....+...+.+.++++.+++.+....... ..+..||+|||||++|||+|+.+|+||+||
T Consensus 96 ~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred Ccc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 875 99999987643221 11223344567889999988542211111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT 229 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence 99999999999999999999964 899999999986 67888999999975 799998874
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=311.95 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=158.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 4599999999999999999999999999999999997653 47999999986532 234567999999988776 69
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG------LPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
+.|++.+... ... .+.+.++++.+++.+..+.... ...+..||||||||++||++|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 111 1235678888888776665321 112357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g 1108 (1403)
||||+|||+.++..+++.|++++++ +|||++||+++ . .+.+|++++|++ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998764 89999999986 3 479999999985 7777643
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=352.40 Aligned_cols=213 Identities=23% Similarity=0.324 Sum_probs=176.3
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|++|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36899999887631 124699999999999999999999999999999999998664 47999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
.++ ..+++.++||+|++.+++ -|++||+.++. +.+.++ +.++++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 643 456788999999998876 69999998752 111222 23666777776543 346777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
| +.||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||++++|++
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999999985 4799999999985 5678999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=313.15 Aligned_cols=215 Identities=24% Similarity=0.294 Sum_probs=171.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC--c-eeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 948 (1403)
.+.++++++.. +++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~-------------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYY-------------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEE-------------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 46777776543 234699999999999999999999999999999999997542 1 2579999998
Q ss_pred ccCC-------hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC----cccccc
Q 037155 949 YPKK-------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP----LRDALV 1017 (1403)
Q Consensus 949 ~~~~-------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 1017 (1403)
.+.. ....++.++|++|++.+++. |++||+.+....... . .....++.++++++.+++.+ ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV-K-RRSILEERVENALRNAALWDEVKDRLGDL- 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC-C-hHHHHHHHHHHHHHHcCCchhhhHHHhCC-
Confidence 7542 12345679999999988886 999999876433211 1 11222345778888888742 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1018 g~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++
T Consensus 159 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~ 232 (265)
T PRK14252 159 ----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAY 232 (265)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999975 699999999986 57789999999
Q ss_pred EecCcEEEEecCC
Q 037155 1098 MKRGGRVIYAGPL 1110 (1403)
Q Consensus 1098 l~~gG~~~~~g~~ 1110 (1403)
|++ |+++..|+.
T Consensus 233 l~~-G~i~~~g~~ 244 (265)
T PRK14252 233 MYM-GELIEFGAT 244 (265)
T ss_pred EEC-CEEEEeCCH
Confidence 984 889888874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=306.30 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=164.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~ 264 (1403)
+++|+|+.+++|++++|+||||||||||+++|+|.+++ .+|+|.++|+++.... .++.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP---------------------ASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEcccCChhccc
Confidence 45799999999999999999999999999999999865 5899999998765422 3467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++|++|++.+++.+|++||+.+...... . .... ....++.+++.+|
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~-~-------------------~~~~--------------~~~~~~~~l~~~~ 117 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGL-K-------------------LNAE--------------QQEKVVDAAQQVG 117 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccC-C-------------------ccHH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999986422100 0 0000 0112456788999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++..++.+.+ ||||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.+..+.|+|++.|++ .+
T Consensus 118 l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~ 191 (213)
T TIGR01277 118 IADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SD 191 (213)
T ss_pred cHHHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH
Confidence 98888877755 9999999999999999999999999999999999999999999998765577888776655 47
Q ss_pred HHhhcCEEEEEcCCeEEEecC
Q 037155 425 TYDLFDDIILISEGQIVYHGP 445 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~ 445 (1403)
+.+++|++++|++|+++..|.
T Consensus 192 ~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 192 ARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHhhcCeEEEEECCeEEEecC
Confidence 778999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=310.65 Aligned_cols=205 Identities=24% Similarity=0.413 Sum_probs=159.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|.++....
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------------------~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---------------------ENGRVLVDGHDLALADPAW 73 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---------------------CCCEEEECCeehHhcCHHH
Confidence 4699999999999999999999999999999999999865 5899999998764332
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++|++|++.+++ .||+||+.+... .. . .+ + +. ++.... ..+..+
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~-~-~~---~---------------~~---~~~~~~------~~~~~l 121 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALADP--GM-S-ME---R---------------VI---EAAKLA------GAHDFI 121 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhccCC--CC-C-HH---H---------------HH---HHHHHc------CcHHHH
Confidence 2467999999987775 699999987432 10 0 00 0 00 000000 112234
Q ss_pred HHc--CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 341 KLL--GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 341 ~~l--gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+.+ |++...+..+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.
T Consensus 122 ~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s 194 (237)
T cd03252 122 SELPEGYDTIVGEQG-----AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIA 194 (237)
T ss_pred HhCcccccchhhcCC-----CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEe
Confidence 444 4444444444 45999999999999999999999999999999999999999999999853 78888888
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++ ..+|++++|++|++++.|+.+++.
T Consensus 195 H~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 195 HRLS-TV-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred CCHH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 7775 45 569999999999999999988765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.77 Aligned_cols=208 Identities=25% Similarity=0.301 Sum_probs=162.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hh-hcceeeEeecCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ET-FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~-~~~~~gyv~Q~~~~~~~ 972 (1403)
++.+|+|+|++|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 356999999999999999999999999999999999973211347999999987532 11 23469999999988888
Q ss_pred CCHHHHHHHHHh-hhCC---CCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 973 VTLYESLLYSAW-LRLS---SDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 973 lTv~e~l~~~~~-lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+|+.+++.+... ++.. .........+.++++++.+++. +..+..+. +.||||||||++|||+|+.+|+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~ill 168 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCI 168 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887776543211 1110 0011122345678889999984 34444321 2699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+.+.|+++++.|+|||++||+++ .+... +|++++|+ +|++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999999877899999999976 34444 79999997 5789998874
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=309.68 Aligned_cols=195 Identities=25% Similarity=0.359 Sum_probs=160.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++ .+|+|.++|+++...
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---------------------DSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEECCccchhH
Confidence 4699999999999999999999999999999999999864 589999999876421
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcc-cccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..++.++|++|++.+++.+||+||+.++.. .++. +.+ +....++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---------------------~~~-------------~~~~~~~ 117 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGM---------------------SKA-------------EAEERAL 117 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCC---------------------CHH-------------HHHHHHH
Confidence 124679999999999999999999987532 1100 000 0011245
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..++.+.+ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++
T Consensus 118 ~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~ 191 (213)
T cd03262 118 ELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVV 191 (213)
T ss_pred HHHHHcCCHhHhhhCccc-----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEE
Confidence 578889998878877765 999999999999999999999999999999999999999999999876 47788777
Q ss_pred EecCchhHHhhcCEEEEEcCCeE
Q 037155 418 LLQPAPETYDLFDDIILISEGQI 440 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~i 440 (1403)
.|++ .++.+++|+|++|++|++
T Consensus 192 sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 192 THEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred eCCH-HHHHHhCCEEEEEeCCcC
Confidence 6554 477889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=304.34 Aligned_cols=184 Identities=24% Similarity=0.319 Sum_probs=154.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 45699999999999999999999999999999999997653 47999999987532 234567999999988888899
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
+.|++.+....+. . + .+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 90 v~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987654321 1 1 234688999999987777654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
||+.++..+++.|++++++|.|||+++|++. ++ .+++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 9999999999999998877999999999975 22 3466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=310.56 Aligned_cols=194 Identities=20% Similarity=0.297 Sum_probs=164.3
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
..+.+|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.++|. +++++|...+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 346799999999999999999999999999999999998653 4799999984 3567777777788999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
.||+.+..... ....++..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998764432 1223444455778889999987776653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|+.++..+++.|+++++.|+|||+++|++. ++.+.+|++++|+ +|++++.|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999877999999999976 5778899999998 47899888754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=314.94 Aligned_cols=196 Identities=28% Similarity=0.417 Sum_probs=153.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 4599999999999999999999999999999999997653 47999999976532 233467999999988776 69
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA-------LVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
|+|++.+....+ ..+. .++.++..++.+..+. ... ..+..|||||||||+||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHHH----HHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998753211 1111 2223333333221111 111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7999999999986 34 48999999985 789988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=316.66 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=171.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV- 260 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~- 260 (1403)
+.+++|+++|+.+++|++++++||+|+||||++++|-.++++ .+|.|+++|+++.+..
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~---------------------~sG~I~id~qdir~vtq 332 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV---------------------NSGSITIDGQDIRDVTQ 332 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC---------------------cCceEEEcchhHHHhHH
Confidence 356899999999999999999999999999999999999865 4899999999886643
Q ss_pred --ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 261 --PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.++.||.|||+..+|.+ |+..|+.|+. |+...++...++..+. ..+.
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr-------------------------~~at~eev~aaa~~aq-----i~~f 381 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGR-------------------------PDATAEEVGAAAEAAQ-----IHDF 381 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccC-------------------------ccccHHHHHHHHHHhh-----hhHH
Confidence 36889999999999966 9999998862 2222222222222111 1222
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+. -|++++||.||+ ++--|||||||||+|||+++++|+||++||.||+||++|..+|...|+..+. ++|.++.-
T Consensus 382 i~---~lP~gy~t~Vge-rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlvia 455 (497)
T COG5265 382 IQ---SLPEGYDTGVGE-RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIA 455 (497)
T ss_pred HH---hCchhhhcccch-heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEe
Confidence 22 389999999997 2223899999999999999999999999999999999999999999999874 67777766
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|.- .+.--+|.|+||++|+|++.|++++++.
T Consensus 456 hrl--sti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 456 HRL--STIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred ehh--hhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 644 4677799999999999999999999975
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=312.38 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=155.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 3599999999999999999999999999999999998653 47999999976532 3345679999999887775 9
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccc-c-----CCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV-G-----LPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
++||+.+.... ... ..+++.++.+++.+..+... | ...+..|||||||||+||++|+.+|++|+|
T Consensus 93 v~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999765311 111 12344455554443332211 0 112457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999986 4899999999986 34 56999999985 788887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=328.30 Aligned_cols=192 Identities=21% Similarity=0.299 Sum_probs=161.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
+.+|+||||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999998653 479999999641 1222344567899999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
++.+...... ...++..+.++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987553321 223344456788999999988777654 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
.++..+++.|++++++|+|||+++|+++ ++.+.||++++|.+ |++++.|+..
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999877999999999986 57788999999985 8999988754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.89 Aligned_cols=207 Identities=19% Similarity=0.292 Sum_probs=161.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+.+|+|.++|+++...
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~----------------~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE----------------GCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC----------------CCCCceEEEECCEEcccccCCH
Confidence 359999999999999999999999999999999999875310 013689999999876421
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++. ||+||+.+.+...+... +. ...++.
T Consensus 90 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~---------------------~~--------------~~~~~~ 133 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTG---------------------DM--------------DELVER 133 (269)
T ss_pred HHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcH---------------------HH--------------HHHHHH
Confidence 124579999999988874 99999988654321100 00 001233
Q ss_pred HHHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+++. +..++.+ ..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ +.|+
T Consensus 134 ~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~ti 206 (269)
T PRK14259 134 SLRKAAVWDECKDKLNESG-----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTI 206 (269)
T ss_pred HHHHhCCcchhhhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEE
Confidence 45666653 3345544 44999999999999999999999999999999999999999999998853 5777
Q ss_pred EEEEecCchhHHhhcCEEEEEcC-----------CeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISE-----------GQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~-----------G~iv~~G~~~~~~ 450 (1403)
|++.|++ .++.+++|++++|++ |++++.|+++++.
T Consensus 207 iivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 207 VIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 7776654 478899999999996 6789999998874
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=299.18 Aligned_cols=159 Identities=30% Similarity=0.443 Sum_probs=142.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----hhhcceeeEeecCCCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 972 (1403)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 5699999999999999999999999999999999997653 47999999987532 2356789999999988888
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
.|++|++.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987642 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|++|
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999877 899999999986 566789999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=312.12 Aligned_cols=208 Identities=20% Similarity=0.283 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc--ccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH--ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-- 259 (1403)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++ |. .+.+|+|.++|+++...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------------------~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS------------------ARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCC------------------CCCceEEEECCEEcccccC
Confidence 369999999999999999999999999999999999875 21 02479999999876431
Q ss_pred ---CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 260 ---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..++.++|++|++.+++.+||+||+.++.+..+.. ...+. ...+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~ 125 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRV-------------------NRSEA--------------DEIV 125 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCC-------------------CHHHH--------------HHHH
Confidence 12567999999999999999999998753221100 00000 1124
Q ss_pred HHHHHHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 337 DYVLKLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 337 ~~il~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
+.+++.+||.. ..++.+ ..||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++.+ ++
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~ 198 (252)
T PRK14256 126 ESSLKRVALWDEVKDRLKSNA-----MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KY 198 (252)
T ss_pred HHHHHHcCCchhhhHHhhCCc-----CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CC
Confidence 55677888754 234444 44999999999999999999999999999999999999999999999864 46
Q ss_pred EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|+|++.|++. ++.+++|++++|++|++++.|+.+++.
T Consensus 199 tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 199 TIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred cEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 7777766554 778999999999999999999988763
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=352.45 Aligned_cols=210 Identities=24% Similarity=0.377 Sum_probs=176.6
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|++|.++ +++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 3588999988763 123599999999999999999999999999999999998764 37999999987
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCC
Q 037155 951 KK---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLP 1020 (1403)
Q Consensus 951 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1020 (1403)
.+ ...+++.++||+|++.+++. |++||+.++. +.++ +.++++++.+|+.+. .|+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 35678899999999999876 9999998852 1222 236778888876643 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
| ..||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++.+ ++|||++||+++ ....||++++|++
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 3 46999999999999999999999999999999999999999999999864 799999999985 5667999999984
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999884
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=320.08 Aligned_cols=221 Identities=24% Similarity=0.327 Sum_probs=171.9
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC---ceeEEEEEEcC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 948 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 948 (1403)
.+.++|+++.+ +.+.+|+++|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~-------------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYY-------------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46777776543 234699999999999999999999999999999999997531 13479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCC---------CCc-HHHHHHHHHHHHHHcCCCCcc
Q 037155 949 YPKKQ-----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS---------DVD-TKKRKIFVDEVMELVELKPLR 1013 (1403)
Q Consensus 949 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 1013 (1403)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .....+.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988777 59999999865322100 011 122345678899999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 037155 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1093 (1403)
Q Consensus 1014 ~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1093 (1403)
+.... ..+..||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++++ ++|||+++|+++ .+.+.||
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12457999999999999999999999999999999999999999999999976 589999999986 5678899
Q ss_pred eEE-EEecCcEEEEecCC
Q 037155 1094 ELL-LMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1094 ~i~-ll~~gG~~~~~g~~ 1110 (1403)
+++ +|+ +|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 566 5899999874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=316.50 Aligned_cols=218 Identities=26% Similarity=0.355 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.+++.... .....+|+|.++|+++.....
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~-------------~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAP-------------RGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccc-------------cccCCceEEEECCEEcccCCHHH
Confidence 46999999999999999999999999999999999998652000 000027999999987754322
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++..++.+||+||+.++....... .+... .+ ....++.++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~---------------~~~~~-~~--------------~~~~~~~~l 130 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARR---------------AGALT-HR--------------DGEIAWQAL 130 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccc---------------cccCC-HH--------------HHHHHHHHH
Confidence 356899999987666789999998753110000 00000 00 011345678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV---------GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
+.+||++..++.+++ |||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++.+..+
T Consensus 131 ~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 205 (272)
T PRK13547 131 ALAGATALVGRDVTT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205 (272)
T ss_pred HHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 899998777776655 9999999999999999 59999999999999999999999999999876557
Q ss_pred cEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 412 VTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 412 ~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|+|++.|++. ++.+++|++++|++|++++.|+.+++.
T Consensus 206 ~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 206 LGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88888777654 777899999999999999999988763
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=302.45 Aligned_cols=195 Identities=28% Similarity=0.448 Sum_probs=168.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----C--c
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-----V--P 261 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-----~--~ 261 (1403)
++++..+.-.+|||-|+||||||||+|+|+|+.+| .+|.|.+||..+.+. . .
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP---------------------deG~I~lngr~L~Ds~k~i~lp~~ 74 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP---------------------DEGRIELNGRVLVDAEKGIFLPPE 74 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc---------------------cccEEEECCEEeecccCCcccChh
Confidence 67888877579999999999999999999999876 589999999865332 1 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+|.+|||+|+..+||++||+-||.|+...- . ....|.+.+
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~~~~-------------------------~---------------~~~fd~iv~ 114 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGMWKS-------------------------M---------------RAQFDQLVA 114 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhhccc-------------------------c---------------hHhHHHHHH
Confidence 589999999999999999999999973210 0 012467889
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.||++|..+...+. |||||||||+|||||++.|++|+||||.+.||-....+|+-+|.++.++.+.-++.. .|.
T Consensus 115 lLGI~hLL~R~P~~-----LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS 188 (352)
T COG4148 115 LLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHS 188 (352)
T ss_pred HhCcHHHHhhCCCc-----cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecC
Confidence 99999999988866 999999999999999999999999999999999999999999999998766555554 455
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
..|+.+++|+|++|++|++...|+.+++.
T Consensus 189 ~~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 189 LDEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred HHHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 66999999999999999999999999885
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=350.98 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|++++|||.++|+||||||||||+++|+|.++| .+|+|.+||.++++..+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p---------------------~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP---------------------QSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC---------------------CCCEEEECCEEHHhcCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. |++|||.++.. +.+.++..+++...+. ...+
T Consensus 412 ~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-------------------------~~~~~~~~~~l~~~~l------~~~i 459 (576)
T TIGR02204 412 LRARMALVPQDPVLFAA-SVMENIRYGRP-------------------------DATDEEVEAAARAAHA------HEFI 459 (576)
T ss_pred HHHhceEEccCCccccc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCc------HHHH
Confidence 4689999999998865 99999987521 1111122222222111 1122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .+++..||.+|+ .+..||||||||+++|||++++|++++||||||+||+.++..+.+.|+++. .++|+|++.|+
T Consensus 460 ~--~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~ 534 (576)
T TIGR02204 460 S--ALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHR 534 (576)
T ss_pred H--hCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecc
Confidence 2 267788999986 467799999999999999999999999999999999999999999999874 37899988887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +....+|+|++|++|+++..|+++++.+
T Consensus 535 ~--~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 535 L--ATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred h--HHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 6 4668899999999999999999988753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=313.24 Aligned_cols=207 Identities=22% Similarity=0.341 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCcc-----CCC
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHE-----LNE 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~-----~~~ 258 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|.+ +..
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP---------------------DAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCEEEECCcccccccccc
Confidence 3699999999999999999999999999999999999865 58999999987 544
Q ss_pred CCc-------cceEEEeccCC--CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhc
Q 037155 259 FVP-------QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAG 329 (1403)
Q Consensus 259 ~~~-------~~~~~yv~Q~d--~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 329 (1403)
... ++.++|++|++ .+++.+|++||+.+.....+. ....+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~------------ 126 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-------------------RHYGD------------ 126 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc-------------------CcHHH------------
Confidence 321 34699999997 367778999999753211000 00000
Q ss_pred cchhHHHHHHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 330 QETSLVTDYVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 330 ~~~~~~~~~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
....++.+++.+|+.+ ..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++.+
T Consensus 127 --~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 199 (258)
T PRK11701 127 --IRATAGDWLERVEIDAARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred --HHHHHHHHHHHcCCChhHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0112456788899974 56666654 999999999999999999999999999999999999999999999876
Q ss_pred hCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 409 IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 409 ~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
..+.|+|++.|++ .++.+.+|+|++|++|++++.|+++++.
T Consensus 200 ~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 200 ELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 5577887776655 4777889999999999999999988763
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=313.62 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++.- ..+.+|+|.++|+++...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~----------------~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP----------------GARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCccc----------------CCCcceEEEECCEeccccccCh
Confidence 369999999999999999999999999999999999885310 012589999999876421
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++.+||+||+.++....+.. +..+ ....++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~-------------------~~~~--------------~~~~~~~ 127 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVR-------------------NKKD--------------LDELVEK 127 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCC-------------------CHHH--------------HHHHHHH
Confidence 12467999999999999999999998764321100 0000 0112355
Q ss_pred HHHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+++.+||. +..++.++ .|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+
T Consensus 128 ~l~~~~l~~~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tv 200 (258)
T PRK14241 128 SLRGANLWNEVKDRLDKPGG-----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTI 200 (258)
T ss_pred HHHHcCCchhhhhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEE
Confidence 67788874 33455554 4999999999999999999999999999999999999999999999854 5787
Q ss_pred EEEEecCchhHHhhcCEEEEEc------CCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILIS------EGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~------~G~iv~~G~~~~~~ 450 (1403)
|++.|++ .++.+++|+|++|+ +|++++.|+++++.
T Consensus 201 iivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 201 VIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 7776654 47788999999997 79999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=312.14 Aligned_cols=209 Identities=18% Similarity=0.276 Sum_probs=162.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|..+.. +..+.+|+|.++|+++...
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----------------~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLI----------------PSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccccc----------------CCCCCceEEEECCEEcccccccH
Confidence 35999999999999999999999999999999999975310 0013589999999877531
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++. ||+||+.+..+..+.. ..... ......
T Consensus 98 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~~~ 143 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGER-------------------RKSVL--------------DEIVEE 143 (268)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCC-------------------cHHHH--------------HHHHHH
Confidence 124579999999988875 9999998753211100 00000 011234
Q ss_pred HHHHcCCc----ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 339 VLKLLGLD----ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 339 il~~lgL~----~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.++.+|+. +..++.++ .||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+
T Consensus 144 ~l~~~~l~~~~~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~ti 216 (268)
T PRK14248 144 SLTKAALWDEVKDRLHSSAL-----SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSI 216 (268)
T ss_pred HHHHcCCCcchHHHHhcCcc-----cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEE
Confidence 56666764 23345554 4999999999999999999999999999999999999999999999854 5787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.|++. ++.+++|+|++|++|++++.|+.+++.
T Consensus 217 ii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 217 IIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 77776654 788899999999999999999988764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=351.03 Aligned_cols=212 Identities=27% Similarity=0.414 Sum_probs=176.8
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++|+|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46899999887531 124599999999999999999999999999999999997653 47999999987
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc------ccccccCCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL------RDALVGLPG 1021 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg~~~ 1021 (1403)
..+ ..+++.++||+|++.+++ .|++||+.++.. +.+ ++.++++++.+++.+. .|+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 643 456788999999998876 599999987531 222 2346788888888754 35666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 34699999999999999999999999999999999999999999999986 4899999999986 3467999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 899998874
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=311.30 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc--ccchhhcccchhhhhhhccCCCcceEEEECCccCCCC--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH--ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-- 259 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ |.. +.+|+|.++|+++...
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~------------------~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEV------------------TITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCC------------------CccceEEECCEECcCccc
Confidence 359999999999999999999999999999999999853 210 1479999999876421
Q ss_pred ---CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 260 ---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..++.++|++|++.+++ +||+||+.++....+.. ..... ...+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~ 125 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIK-------------------DKQVL--------------DEAV 125 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCC-------------------cHHHH--------------HHHH
Confidence 12467999999998887 79999998763321110 00000 0123
Q ss_pred HHHHHHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 337 DYVLKLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 337 ~~il~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
+.+++.+|+.. ..+..+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~ 198 (252)
T PRK14239 126 EKSLKGASIWDEVKDRLHDSA-----LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DY 198 (252)
T ss_pred HHHHHHcCCchhHHHHHhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CC
Confidence 45667777643 234444 45999999999999999999999999999999999999999999999854 57
Q ss_pred EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|+|++.|++. ++.+.+|+|++|++|++++.|+.+++.
T Consensus 199 tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 199 TMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred eEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8777766554 788899999999999999999998874
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=310.00 Aligned_cols=208 Identities=22% Similarity=0.341 Sum_probs=162.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF----- 259 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~----- 259 (1403)
++|+|+|+++++||+++|+|||||||||||++|+|.+++.. ..+.+|+|.++|+++...
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~----------------~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP----------------SVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC----------------CCCCceEEEECCEEccccccchH
Confidence 59999999999999999999999999999999999864210 012589999999887531
Q ss_pred CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 260 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 260 ~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
..++.++|++|++.+++ +||+||+.++....+.. +..+. ....+.+
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~-------------------~~~~~--------------~~~~~~~ 126 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIK-------------------DKKKL--------------DEIVEKS 126 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCC-------------------CHHHH--------------HHHHHHH
Confidence 12467999999988887 89999998864322110 00000 1123445
Q ss_pred HHHcCCcc----cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 340 LKLLGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 340 l~~lgL~~----~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++.+++.+ ..++.++ .||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|
T Consensus 127 l~~~~l~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii 199 (250)
T PRK14240 127 LKGAALWDEVKDRLKKSAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIV 199 (250)
T ss_pred HHHcCCchhhHHHHhcCCC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEE
Confidence 66666642 3344444 4999999999999999999999999999999999999999999999853 67888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.|+. .++.+.+|+|++|++|++++.|+.+++.
T Consensus 200 i~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 200 IVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 777654 4788899999999999999999988763
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=300.26 Aligned_cols=204 Identities=19% Similarity=0.303 Sum_probs=151.7
Q ss_pred cCcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcC
Q 037155 869 RPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 948 (1403)
Q Consensus 869 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 948 (1403)
.|..+..+++++-++ +.++++++++|-|.--..+||+||||.||||||++|.|..++. .|+.+-|
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhcc-
Confidence 344566677665432 3567899999999999999999999999999999999987643 5654321
Q ss_pred ccCChhhhcceeeEeecCC--CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 037155 949 YPKKQETFARVSGYCEQTD--IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 949 ~~~~~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1026 (1403)
.+-.+|+..|.. .+-..-|.-|.|.-.. +.+-++ ....|-.+||...++++- +..||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecC
Confidence 233578877753 2333456656554221 122222 456788899988888752 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
||||-||++|-.-++.|+||||||||++||.++...+-+.|++. ...||+++||-.. +.+--+.++|+.+.|.-..
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999887 4579999999653 4455567888887776556
Q ss_pred ecCCCc
Q 037155 1107 AGPLGR 1112 (1403)
Q Consensus 1107 ~g~~~~ 1112 (1403)
.|....
T Consensus 783 dGdFeD 788 (807)
T KOG0066|consen 783 DGDFED 788 (807)
T ss_pred cccHHH
Confidence 666543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=378.61 Aligned_cols=207 Identities=23% Similarity=0.305 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|++|+|||.+||+||+|||||||+++|.|.+++ .+|+|.+||.++++...
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p---------------------~~G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL---------------------ERGRILIDGCDISKFGLMD 1310 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC---------------------CCceEEECCEecccCCHHH
Confidence 3699999999999999999999999999999999999865 58999999999887653
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
|+.++||+|++.+|.. ||||||+++.. .. .++..+++...+. .+.+.
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~~-----------------------~t---deei~~Al~~a~l-----~~~I~ 1358 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFNE-----------------------HN---DADLWESLERAHL-----KDVIR 1358 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCCC-----------------------CC---HHHHHHHHHHcCc-----HHHHH
Confidence 5889999999999976 99999976411 01 1223334333332 12222
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
.|+.+.||.||+ .+..||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|++.|.
T Consensus 1359 ---~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHR 1432 (1622)
T PLN03130 1359 ---RNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHR 1432 (1622)
T ss_pred ---hCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence 378889999995 567799999999999999999999999999999999999999999999874 37898888776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. ++...+|+|++|++|+|+++|+++++++
T Consensus 1433 L--~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1433 L--NTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred h--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5 4667799999999999999999999874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=313.98 Aligned_cols=231 Identities=19% Similarity=0.261 Sum_probs=175.5
Q ss_pred hhhcCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcC
Q 037155 126 TDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGP 205 (1403)
Q Consensus 126 ~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp 205 (1403)
.|...+.++..-+.++|+++.- .++++|+|+|+.+++||+++|+||
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~----------------------------------~~~~~l~~vs~~i~~Ge~~~IiG~ 54 (274)
T PRK14265 9 SDSATINPDHSVFEVEGVKVFY----------------------------------GGFLALVDVHLKIPAKKIIAFIGP 54 (274)
T ss_pred ccccccCCCCceEEEeeEEEEe----------------------------------CCeEEEeeeeeEEcCCCEEEEECC
Confidence 3445666777778888887731 123599999999999999999999
Q ss_pred CCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-----CccceEEEeccCCCCCCCCCH
Q 037155 206 PGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-----VPQRTCAYISQHDLHHGEMTV 280 (1403)
Q Consensus 206 ~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV 280 (1403)
|||||||||++|+|.+++.. ..+.+|+|.++|+++... ..++.++|++|++.+++. ||
T Consensus 55 nGsGKSTLl~~l~Gl~~~~~----------------~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv 117 (274)
T PRK14265 55 SGCGKSTLLRCFNRMNDLIP----------------GAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SI 117 (274)
T ss_pred CCCCHHHHHHHHhccccccc----------------CCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cH
Confidence 99999999999999875310 012489999999876421 124679999999888875 99
Q ss_pred HHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCc----ccccccccCc
Q 037155 281 RETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD----ICADTMVGDE 356 (1403)
Q Consensus 281 rE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt~vg~~ 356 (1403)
.||+.++....+.. .+.+ ...+..++.+||. +..++.+
T Consensus 118 ~~nl~~~~~~~~~~---------------------~~~~--------------~~~~~~l~~~~l~~~l~~~~~~~~--- 159 (274)
T PRK14265 118 YENIAFAPRANGYK---------------------GNLD--------------ELVEDSLRRAAIWEEVKDKLKEKG--- 159 (274)
T ss_pred HHHHHhHHHhcCch---------------------HHHH--------------HHHHHHHHHcccchhhHHHhcCCc---
Confidence 99998753221100 0000 0122345555553 3344444
Q ss_pred cCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEc
Q 037155 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILIS 436 (1403)
Q Consensus 357 ~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~ 436 (1403)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|++++|+
T Consensus 160 --~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~ 234 (274)
T PRK14265 160 --TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVADWTAFFN 234 (274)
T ss_pred --ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEe
Confidence 44999999999999999999999999999999999999999999999863 56777776655 47889999999997
Q ss_pred ---------CCeEEEecChhhHH
Q 037155 437 ---------EGQIVYHGPRDNVL 450 (1403)
Q Consensus 437 ---------~G~iv~~G~~~~~~ 450 (1403)
+|++++.|+.+++.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred cccccccccCceEEEeCCHHHHH
Confidence 89999999998874
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=306.49 Aligned_cols=194 Identities=26% Similarity=0.361 Sum_probs=159.2
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCC--CCCHHHHHHHHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSP--HVTLYESLLYSA 983 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~--~lTv~e~l~~~~ 983 (1403)
++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+.+ .+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999997653 4799999998653 23567999999986643 489999998753
Q ss_pred hhhC-CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 984 WLRL-SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 984 ~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
.... .........++.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 2110 000111223345788999999987777654 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
+.+.|++++++|+|||++||+++ ++.+.||+++++ + |++++.|+..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999999877999999999986 577889999998 5 7999998754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=344.42 Aligned_cols=204 Identities=23% Similarity=0.280 Sum_probs=167.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcC-----------------------ccC--
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----------------------YPK-- 951 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g-----------------------~~~-- 951 (1403)
++.+|+|+|+++++|+++||+||||||||||+++|+|.....+.+|+|.++| .+.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 3569999999999999999999999999999999999741012479999872 111
Q ss_pred --------Ch---hhhcceeeEeecC-CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccC
Q 037155 952 --------KQ---ETFARVSGYCEQT-DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019 (1403)
Q Consensus 952 --------~~---~~~~~~~gyv~Q~-~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 1019 (1403)
.. ...++.+||++|+ +.+++.+||+|++.+...... ...++.++++.++++.+||.+..++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 166 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHIA-- 166 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCc--
Confidence 00 1234569999997 678888999999988654321 223344567899999999988777654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1020 ~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+.+.||++++|
T Consensus 167 ---~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l 242 (520)
T TIGR03269 167 ---RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWL 242 (520)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 47999999999999999999999999999999999999999999999965 4899999999986 467889999999
Q ss_pred ecCcEEEEecCC
Q 037155 1099 KRGGRVIYAGPL 1110 (1403)
Q Consensus 1099 ~~gG~~~~~g~~ 1110 (1403)
++ |++++.|+.
T Consensus 243 ~~-G~i~~~g~~ 253 (520)
T TIGR03269 243 EN-GEIKEEGTP 253 (520)
T ss_pred eC-CEEeeecCH
Confidence 85 788888764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=312.05 Aligned_cols=214 Identities=18% Similarity=0.278 Sum_probs=164.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
+++|+|+|+++++|++++|+||||||||||+++|+|..++.. ..+.+|+|+++|.++...
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~----------------~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP----------------NCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCC----------------CCCcceEEEECCEehHhcccch
Confidence 469999999999999999999999999999999999875210 012589999999876432
Q ss_pred -CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
..++.++|++|++.+++. ||+||+.+....++.. ... .. ....++.
T Consensus 82 ~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~-------------------~~~--~~-----------~~~~~~~ 128 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLA-------------------KNK--KK-----------LDEIVEK 128 (251)
T ss_pred HHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCC-------------------CCH--HH-----------HHHHHHH
Confidence 124679999999988876 9999998753221100 000 00 0112355
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||.+...+.+. ...+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.
T Consensus 129 ~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiis 205 (251)
T PRK14244 129 SLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVT 205 (251)
T ss_pred HHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 6788888653222221 12345999999999999999999999999999999999999999999998853 68888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 206 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 206 HSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred CCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 7654 778899999999999999999988763
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=324.57 Aligned_cols=211 Identities=23% Similarity=0.365 Sum_probs=176.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|++++++. ...++|+|+|+++++||.+||+|+||||||||++.|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 5788888877642 235699999999999999999999999999999999997653 479999999875
Q ss_pred C---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCC
Q 037155 952 K---QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPG 1021 (1403)
Q Consensus 952 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 1021 (1403)
. ....++.+++++|...++ .-|+++||.+.. .+.+ ++.+.++++.+||.+.. |+.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 3 344677899999987665 469999998753 2333 34478899999998754 3456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
.+.||||||||++|||+|++|.++++|||||.|||+.+..+|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 456999999999999999999999999999999999999999999999875 899999999975 4688999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 899998874
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=307.06 Aligned_cols=191 Identities=24% Similarity=0.295 Sum_probs=156.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEc--Cc--cCC---hhh---h-cceeeEeecC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS--GY--PKK---QET---F-ARVSGYCEQT 966 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~--g~--~~~---~~~---~-~~~~gyv~Q~ 966 (1403)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++ |. +.. ... . ++.+||++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 4699999999999999999999999999999999997653 36999998 42 321 111 1 3469999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+.+++.+||.|++.+..... ........+.+.++++.+++.+. .+.. +..||||||||++||++|+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998764332 12223334567889999999753 3443 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.||+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999877999999999965 4567899988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=304.92 Aligned_cols=192 Identities=29% Similarity=0.422 Sum_probs=159.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-------Cc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF-------VP 261 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~-------~~ 261 (1403)
|+|+++++ |+++|+|||||||||||++|+|.++| .+|+|.++|.++... ..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~---------------------~~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP---------------------DGGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEecccccchhhhhhH
Confidence 99999999 99999999999999999999999864 589999999876421 12
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.+...... ... ....++.+++
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~------------~~~------------------------~~~~~~~~l~ 117 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKR------------NRE------------------------DRISVDELLD 117 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhCC------------HHH------------------------HHHHHHHHHH
Confidence 4579999999999999999999987532100 000 0112456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ ||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++
T Consensus 118 ~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 118 LLGLDHLLNRYPAQ-----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred HcCCHhHhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 99998777777655 9999999999999999999999999999999999999999999998765577877776655
Q ss_pred chhHHhhcCEEEEEcCCeEEEec
Q 037155 422 APETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G 444 (1403)
.++.+.+|++++|++|+++..|
T Consensus 193 -~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 193 -SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred -HHHHHhcCEEEEEECCEEEecC
Confidence 4677899999999999998775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=379.53 Aligned_cols=207 Identities=24% Similarity=0.298 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|++|+|||.++|+||+|||||||+++|.|.++| .+|+|.+||.++++...
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p---------------------~~G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL---------------------EKGRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---------------------CCceEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999999877653
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. ||||||+++.. ..| ++..+++...+.+ +.+
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~~-----------------------~sd---eei~~al~~a~l~-----~~I- 1354 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFSE-----------------------HND---ADLWEALERAHIK-----DVI- 1354 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCCC-----------------------CCH---HHHHHHHHHcCCH-----HHH-
Confidence 6789999999999976 99999976411 011 2233333333221 222
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.++++.||.||+ .+.+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|++.|.
T Consensus 1355 --~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHR 1429 (1495)
T PLN03232 1355 --DRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHR 1429 (1495)
T ss_pred --HhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCC
Confidence 2377889999995 567799999999999999999999999999999999999999999999864 47898888776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
. ++...+|+|++|++|++++.|+++++++
T Consensus 1430 l--~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1430 L--NTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred H--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 6 5677799999999999999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1403 | ||||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 8e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-04 |
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1403 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 9e-26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-12 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-15 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-12 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-17 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-11 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-12 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-11 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-09 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-08 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-08 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-05 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-08 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-06 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 7e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 9e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 9e-26
Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 37/237 (15%)
Query: 884 MPAEMKTEGVG---EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 938
M + E +G + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 939 YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL-----YSAWLRLSSDVDT 993
IE + G+ Q ++ + +L + D
Sbjct: 61 KIE--------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 994 KKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053
+ + ++ + L L LS QR+ + IA + + +I +DEPTS
Sbjct: 107 QV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1054 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
LD IV+ + + TVV T HQP+ + ++ LL+ + G
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 74/268 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+ + ++ + + +LG G GK+TL+ L G
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH---------------------RPI 58
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-ELLAELS 304
GKI E+ ++ ++ Q +V + + GR + + A+
Sbjct: 59 QGKI-----EVY-----QSIGFVPQFFSSPFAYSVLDIVLM-GR-----STHINTFAKPK 102
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
+ Q V L L L A +SGG
Sbjct: 103 SHDYQ-------------------------VAMQALDYLNLTHLAKREFTS-----LSGG 132
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL--LQPA 422
Q++ + + K++L+DE ++ LD + + L + ++T++
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450
+ + +L+++ + G N+L
Sbjct: 193 VA---IANKTLLLNKQNFKF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-PKKQETFARVS-GYCE 964
G + L+G +GAGKTT + +++ + + G + + G ++ R Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 965 QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG 1024
+ ++ E L + A + + + V+ E+ L V
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----T 146
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 54/286 (18%), Positives = 90/286 (31%), Gaps = 100/286 (34%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ILK +S ++ + L+GP GAGKTT + ++ +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI--------------------- 65
Query: 243 EQASGKITYCGHELNE----------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 292
+ +SG +T G + E ++P+ AY M E L F
Sbjct: 66 KPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYA 117
Query: 293 VGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352
S E ++ + + ++ GL
Sbjct: 118 ----------SSSSEIEEMV------------------------ERATEIAGLGEKIKDR 143
Query: 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV----- 407
V S G +++ L+ ++ ++DE ++GLD ++ K LKQ
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 408 -----HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDN 448
H M E L D I LI G IV G +
Sbjct: 199 ILVSSHNML------------EVEFLCDRIALIHNGTIVETGTVEE 232
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 48/238 (20%), Positives = 89/238 (37%), Gaps = 34/238 (14%)
Query: 884 MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIE- 941
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG G I+
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 942 GDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVD 1001
+ + + A Y Q ++ L + K R ++
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLN 108
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 1054
+V + L N LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
LD + + + + G +V + H D+ L+K GG+++ +G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 52/291 (17%), Positives = 85/291 (29%), Gaps = 108/291 (37%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
L +SG V+ + L+GP GAGK+TL+ +AG
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----------------------S 51
Query: 245 ASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
G I + G L + AY+SQ V
Sbjct: 52 GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH-----------------YL 94
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
L + +K E+ + V L LD +
Sbjct: 95 TLHQHDKT-----RTEL-----------------LNDVAGALALDDKLGRSTNQ-----L 127
Query: 362 SGGQKKRVT-------TGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD--- 411
SGG+ +RV A ++LL+DE LD + Q +
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD----------VAQQSALDKILS 177
Query: 412 ------VTMIVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVL 450
+ ++++ +DL L+ G+++ G R+ VL
Sbjct: 178 ALSQQGLAIVMSS-------HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 25/200 (12%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSGYCEQT 966
G + G +G GKTTL+ ++ + +G+I +G P + ++ + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGKI-FFLPEE 86
Query: 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026
I +++ + L A L V K +I + +E VE+ L+ + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY---GVKVNKNEI--MDALESVEVLDLKKK------LGELS 135
Query: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1085
+R+ +A L+ N I +D+P +D + V++++ + + G ++ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 1086 IDIFEAFDELLLMKRGGRVI 1105
D + + I
Sbjct: 193 --ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 3e-17
Identities = 34/266 (12%), Positives = 87/266 (32%), Gaps = 76/266 (28%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
S D +L+ ++ ++ + GP G GKTTL+ ++ L
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL----------------- 59
Query: 239 IWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
+ G+I Y G + + + ++ + + +++V + L GV
Sbjct: 60 ----KPLKGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV----- 108
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
+ K + L+ + + +++
Sbjct: 109 ------KVNKNE-------------------------IMDALESVEV---------LDLK 128
Query: 359 RGI---SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
+ + S G +RV L+ A++ ++D+ +D + ++ K + +++ + +I
Sbjct: 129 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 416 VALLQPAPETYDLFDDIILISEGQIV 441
+ E D + +
Sbjct: 189 S-----SREELSYCDVNENLHKYSTK 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 3e-21
Identities = 49/257 (19%), Positives = 87/257 (33%), Gaps = 45/257 (17%)
Query: 836 GNEVEGTQMTVRSSTEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGE 895
V G S E + + L FR +L F + D+ + +
Sbjct: 297 VPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSY 356
Query: 896 DRLQ------LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKIS 947
L+ +L+ G F + +MG +G GKTTL+ +LAG + G + +S
Sbjct: 357 PSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS 416
Query: 948 GYPKK-----QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
P+K T L + F +
Sbjct: 417 MKPQKIAPKFPGT--------------------VRQLFFK------KIRGQFLNPQFQTD 450
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
V++ + + + D V LS + +R+ I + L I +DEP++ LD+ I
Sbjct: 451 VVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII 505
Query: 1063 VMRTVRNTV-DTGRTVV 1078
+ +R + +T
Sbjct: 506 CSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-14
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 23/211 (10%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEG---DIKISGYPKKQETFARVSGYC 963
RPG + L+G +G GK+T + +LAG + G + +I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 964 EQ---TDIHSPHVTLYESLLYS--AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
E I +V + + + +K V +++++L+ +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR--- 217
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
+ LS + +R I + V + DEP+S LD + + +R+ + + V+
Sbjct: 218 --DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 1079 CTIHQPSIDIFEA---FDELLLMKRGGRVIY 1106
C H D+ D + ++ G +Y
Sbjct: 276 CVEH----DLSVLDYLSDFVCIIY-GVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-11
Identities = 44/238 (18%), Positives = 72/238 (30%), Gaps = 74/238 (31%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
K + +L G S + +++G G GKTTL+ LAG L +
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-------------- 405
Query: 239 IWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
G+ +P+ + Q TVR+
Sbjct: 406 -------EGQD----------IPKLNVSMKPQKIAPKFPGTVRQLFFKK----------- 437
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
+ + + Q V+K L +D D V
Sbjct: 438 IRGQFLNPQFQ---------------------------TDVVKPLRIDDIIDQEVQH--- 467
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+SGG+ +RV L A + L+DE S LDS K +++ + T +
Sbjct: 468 --LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 46/270 (17%), Positives = 83/270 (30%), Gaps = 67/270 (24%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENL-RVRFQSNKFLIIRIWK 241
+P ++ L+G G GK+T + LAGK NL R II+ ++
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFR 148
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
+ T Q+ + ++ + G L
Sbjct: 149 GSELQNYFTK------MLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLK--------- 192
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
L + + + +K+L L+ + ++R I
Sbjct: 193 -LRMEKSPEDV------------------------KRYIKILQLE--------NVLKRDI 219
Query: 362 ---SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
SGG+ +R G V A V + DE S+ LD + ++ ++ +I
Sbjct: 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICV- 277
Query: 419 LQPAPETYDLF------DDIILISEGQIVY 442
+DL D + +I VY
Sbjct: 278 ------EHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 5e-21
Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYP--KKQE 954
+L +S G L G++GAGKTTL+++L T G + + G K
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 955 TFARVS---GYCEQTDIH---SPHVTLYESLL-----YSAWLRLSSDVDTKKRKIFVDEV 1003
+ V G+ + + + ++ + D + ++
Sbjct: 91 SAETVRQHIGFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE----AHQL 145
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
++LV + +G LST +++R+ IA L+ P ++ +DEP +GLD A +
Sbjct: 146 LKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESL 200
Query: 1064 MRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ + + ++ H +I F ++LL+K G+ I G
Sbjct: 201 LSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 53/278 (19%), Positives = 94/278 (33%), Gaps = 69/278 (24%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
ILK +S + +L G GAGKTTL+ L
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-------------------- 72
Query: 243 EQASGKITYCGHELNEFVPQ----RTC-AYISQ--HDLHHGEMTVRETLDFSGRCLGVGT 295
SG + G + R ++S + V + + SG +G
Sbjct: 73 -ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV-ISGAFKSIG- 129
Query: 296 RYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD 355
+ ++ + + +LKL+G+ A +G
Sbjct: 130 ---VYQDIDDEIRNE-------------------------AHQLLKLVGMSAKAQQYIGY 161
Query: 356 EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD-VTM 414
+S G+K+RV L+G +VL++DE + GLD + L + + M
Sbjct: 162 -----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAM 216
Query: 415 IVAL--LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
I ++ F I+L+ +GQ + G +++L
Sbjct: 217 IYVTHFIEEITA---NFSKILLLKDGQSIQQGAVEDIL 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 35/227 (15%)
Query: 856 EENAPRRGMILPFRPLSLTFN-QMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLT 914
+EN R + F LS + + V+ P +K G L G R G +
Sbjct: 331 DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGS-----FKLEVEPGEIRKGEVI 385
Query: 915 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPH 972
++G +G GKTT + +LAG T G +E D+ ++ Y Q
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--------------YKPQYIKAEYE 431
Query: 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKR 1032
T+YE L D + E+++ + + L D V LS + +R
Sbjct: 432 GTVYELLS-------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQR 479
Query: 1033 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1078
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 9e-14
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKK--QETFA 957
+ G++ ++G +G GKTT + +LAG+ D I + Q F
Sbjct: 110 RLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE 169
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
R+ + + +V L + L VD + +EV++ +EL+ + D +
Sbjct: 170 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENVLDREL 226
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V
Sbjct: 227 HQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 1078 V 1078
+
Sbjct: 282 L 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-13
Identities = 64/320 (20%), Positives = 108/320 (33%), Gaps = 100/320 (31%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
K L+ G ++ + ++GP G GKTT + LAG
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE---------------- 406
Query: 238 RIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
E GK+ + + PQ YI E TV
Sbjct: 407 -----EPTEGKVEWDLTVA--YKPQ----YIKAEY----EGTVY---------------- 435
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
ELL+++ + T+ +LK LG+ D V D
Sbjct: 436 ELLSKIDSSKLNSNFY---------------------KTE-LLKPLGIIDLYDRNVED-- 471
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417
+SGG+ +RV L+ A + L+DE S LD + + ++ ++ + T +V
Sbjct: 472 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 418 LLQPAPETYDLF------DDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQ 471
+D+ D +I+ EG+ HG + R+G+ FL
Sbjct: 529 -------EHDVLMIDYVSDRLIVF-EGEPGRHGRALPPM----------GMREGMNRFLA 570
Query: 472 E--VTSKKDQEQYWFRKNQP 489
+T ++D + R N+
Sbjct: 571 SVGITFRRDPDSGRPRANKE 590
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 53/235 (22%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ IVK + ++GP G GKTT + LAG+L NL S +I
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
E + E+ V + Q+ + G ELL +
Sbjct: 163 ELQNYFERLKNGEIR-PVVK------PQYVDLLPKAVK-------------GKVRELLKK 202
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+ K + + + E++ + + +L S
Sbjct: 203 VDEVGKFEEVVKELELENVLDR-------------ELHQL-------------------S 230
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417
GG+ +RV L+ A DE S+ LD ++ + ++++ + ++V
Sbjct: 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVV 284
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 4e-19
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 36/241 (14%)
Query: 848 SSTEIVGEEENAPRRGMI----LPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQ---L 900
S + N RG + + FRP + F + V++ E +
Sbjct: 242 SQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFR 301
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L G + G + ++G +G GKTT + +LAG T G IE D+ ++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
+ T+YE L D + E+++ + + L D V
Sbjct: 356 IK--------ADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1077
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1078 V 1078
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-13
Identities = 64/319 (20%), Positives = 109/319 (34%), Gaps = 100/319 (31%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
K L+ G +K + ++GP G GKTT + LAG
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE----------------- 336
Query: 239 IWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
E GKI + + PQ YI E TV YE
Sbjct: 337 ----EPTEGKIEWDLTVA--YKPQ----YIKAD----YEGTV----------------YE 366
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
LL+++ + T+ +LK LG+ D V +
Sbjct: 367 LLSKIDASKLNSNFY---------------------KTE-LLKPLGIIDLYDREVNE--- 401
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+SGG+ +RV L+ A + L+DE S LD + + ++ ++ + T +V
Sbjct: 402 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV- 458
Query: 419 LQPAPETYDLF------DDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQE 472
+D+ D +++ EG+ +G + R+G+ FL
Sbjct: 459 ------EHDVLMIDYVSDRLMVF-EGEPGKYGRALPPM----------GMREGMNRFLAS 501
Query: 473 --VTSKKDQEQYWFRKNQP 489
+T ++D + R N+
Sbjct: 502 IGITFRRDPDTGRPRANKE 520
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-12
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKK--QETFARVSGY 962
+ G++ ++G +G GK+T + +LAG+ G D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
+ + +V L + + L D + ++EV++ +EL+ + + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREIQH--- 158
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 159 --LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 6e-19
Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 33/207 (15%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIE-GDIKISGYPKKQETFARVSGYCEQ-T 966
G ++G +G+GKTTL+ ++G G I +++ Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGL 1025
+ + VT+ + + L+ + E+++ ++L + + L
Sbjct: 82 EAYEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKL-----YKL 129
Query: 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085
S Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 1086 IDIFEAF---DELLLMKRGGRVIYAGP 1109
++ + G R+
Sbjct: 184 -ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 45/283 (15%), Positives = 87/283 (30%), Gaps = 88/283 (31%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
K + L++++ V ++LGP G+GKTTL+ A++G L+
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG---------------LL- 54
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 296
SG I G E+ + R + + +TV + + G+
Sbjct: 55 ------PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGL--- 103
Query: 297 YELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356
+KA+ ++ + KL
Sbjct: 104 -----------------DRDLFLEMLKAL---KLGEEILRRKLYKL-------------- 129
Query: 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ------MV-HI 409
S GQ V T L +++ +DE +D++ I +++K+ +V H
Sbjct: 130 -----SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHE 184
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEG-QIVYHGPRDNVLE 451
+D + G ++ +LE
Sbjct: 185 LD------------MLNLYKEYKAYFLVGNRLQGPISVSELLE 215
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 26/183 (14%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L +G + G + ++G +G GKTT +L G G + + +I Y K Q F
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP- 341
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
+ T+ + +L +S F +EV + + L L ++ V
Sbjct: 342 -----------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
N LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1079 CTI 1081
I
Sbjct: 440 FII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-12
Identities = 60/319 (18%), Positives = 105/319 (32%), Gaps = 98/319 (30%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
KK L +G K + +LGP G GKTT L G++
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI----------------- 318
Query: 239 IWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
G +T L +Y Q + + TV++ L+
Sbjct: 319 ----TADEGSVTPEKQIL---------SYKPQRIFPNYDGTVQQYLE------------- 352
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
A A +S + V K L L ++ V D
Sbjct: 353 ------------------------NASKDALSTSSWFFEEVTKRLNLHRLLESNVND--- 385
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+SGG+ +++ L A + ++D+ S+ LD + + K +K++ +
Sbjct: 386 --LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII- 442
Query: 419 LQPAPETYDLF------DDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQE 472
+DL D II+ +G+ G + + + G+ +FL+E
Sbjct: 443 ------DHDLSIHDYIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRE 485
Query: 473 --VTSKKDQEQYWFRKNQP 489
VT ++D E R N+
Sbjct: 486 LEVTFRRDAETGRPRVNKI 504
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 27/210 (12%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQ--- 965
+ + ++G +G GKTT++ +LAG + + + K K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 966 ----TDIHSPHVT--LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
++ E ++ + + DEV EL+ + L +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN----- 133
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
N LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIV 192
Query: 1080 TIHQPSIDIF---EAFDELLLMKRGGRVIY 1106
H D+ D + ++ G +Y
Sbjct: 193 VDH----DLIVLDYLTDLIHIIY-GESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 32/168 (19%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGG +R+ L+ A V + D+ S+ LD + K +++++ + +IV
Sbjct: 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVV---- 193
Query: 422 APETYDLF--DDI---ILISEGQIVYHGPRDNVLEFF---------------EQMGFKCP 461
+DL D + I I G+ +G + E M +
Sbjct: 194 ---DHDLIVLDYLTDLIHIIYGESSVYGR--VSKSYAARVGINNFLKGYLPAENMKIRPD 248
Query: 462 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 509
E K + + ++ KD + + V+ G+
Sbjct: 249 EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNG-EAKEGE 295
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIK 945
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 946 ISGYPKKQETFAR--VSGYCEQTDIHSPHVTLYES----LLYSAWLRLSSDVDTKKRKIF 999
+ + T R G+ Q P +T E+ L++ + + ++R+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF----KYRGAMSGEERRKR 124
Query: 1000 VDEVMELVELKPLRDALVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
E +++ EL+ + P N LS Q++R+ IA L NP II D+PT LD++
Sbjct: 125 ALECLKMAELE---ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 1059 AAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1086
+M+ ++ + G+TVV H ++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-15
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 25/200 (12%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIKISGYPKKQE 954
++L +S + + G +++G SG+GK+TL+ +L T G ++ +K+
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 955 TFAR--VSGYCEQTDIHS--PHVTLYES----LLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
+ R G+ Q H P +T E+ +L K+ K + ++
Sbjct: 77 SLLRNRKLGFVFQF--HYLIPELTALENVIVPMLKM-------GKPKKEAKERGEYLLSE 127
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+ L D L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 LGLG---DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 1067 VRNTVDTGRTVVCTIHQPSI 1086
+ G ++V H+ +
Sbjct: 183 FLKINEGGTSIVMVTHEREL 202
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 40/224 (17%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L +VS G + G +G+GK+TL+ ++AG T GD+ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDV-----------DTKKRKIFVDEVMELV 1007
G Q P + ++ +V D V + ME V
Sbjct: 79 NIGIAFQ----YPEDQFFAERVFD-------EVAFAVKNFYPDRDPVPL---VKKAMEFV 124
Query: 1008 ELKP--LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
L +D LS +++R+ IA +V P I+ +DEP GLD ++R
Sbjct: 125 GLDFDSFKDR-----VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179
Query: 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
V G+TV+ H + D ++++++ G+ ++ G
Sbjct: 180 IVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA---L 418
SGG+K+RV ++V +L++DE GLD + + +++ + T+I+ +
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI 198
Query: 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFE 454
+ D ++++ +G+ V+ G R LE ++
Sbjct: 199 ----ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 2e-14
Identities = 95/668 (14%), Positives = 194/668 (29%), Gaps = 206/668 (30%)
Query: 51 QDDEEELRWAAIERLPTYDRLKKGMLNQILEDGKVVKHEVDVTHLGMQDKKQLMESILRI 110
+D ++ + L K ++ I+ V + + + ++++++ +
Sbjct: 36 KDVQDMPKSI----------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 111 VEEDNERFL-TRIRHRT-DRVGIEIPKIEVRYDHLSVDGDV----HVGSRALPTLLNVAL 164
V N +FL + I+ + IE R D L D V +V SR P
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNV-SRLQP------Y 137
Query: 165 NTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHEN 224
+ AL L+ ++ + G G+GKT +AL L
Sbjct: 138 LKLRQAL-------------LELRPAKNVL-------IDGVLGSGKTW--VALDVCLSYK 175
Query: 225 LRVRFQSNKFLIIRIWKTEQASGKITYCGHE------LNEFVPQRTCAYISQHD------ 272
++ + F W + C L + + Q + S+ D
Sbjct: 176 VQCKMDFKIF-----WLN------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 273 --LHHGEMTVRET------------LD----------FSGRC--LGVGTRYELLAELSRR 306
+H + +R L F+ C L + TR++ +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVT----- 278
Query: 307 EKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD---EMRRG--- 360
D A +++ +L D V LL D D E+
Sbjct: 279 --------DFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPR 328
Query: 361 -ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
+S ++ + D ++T D+ ++ I++ + + +L
Sbjct: 329 RLS------------IIAE---SIRDGLAT-WDNWKHVNC----DKLTTIIESS--LNVL 366
Query: 420 QPAPETYDLFDDIILISEG-QIVYHGPRDNVLEFF-EQMGFKCPERKGVADFLQEVTSKK 477
+PA E +FD + + I P +L + + ++
Sbjct: 367 EPA-EYRKMFDRLSVFPPSAHI----PTI-LLSLIWFDVIKSDVM-----VVVNKLHKYS 415
Query: 478 DQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPYDKSQTHPAALVKEKYGIS 537
E ++ + S +L+V + ++V + Y I
Sbjct: 416 LVE----KQPKESTI-----------SIPSIYL---ELKVKLENEYALHRSIV-DHYNIP 456
Query: 538 KWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGNKYFGA 597
K F L+ Y + + + F
Sbjct: 457 K------TF-DSDDLIPPYLDQYFYS--------------HIGHHLKNIEHPERMTLFRM 495
Query: 598 LFFSL---------LNIMFNGMAELSMTVLRLPVFYKQ---RDHLFYPAWAFALPIWVLR 645
+F + +N + T+ +L FYK + Y A+ ++ +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPK 554
Query: 646 IPLSLLDS 653
I +L+ S
Sbjct: 555 IEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 1e-12
Identities = 116/740 (15%), Positives = 203/740 (27%), Gaps = 285/740 (38%)
Query: 173 LLHLVPSKKRDVQILKDVS----GIVKPSRMTLLLGPPGAGKTTLML--ALAGKLHENLR 226
L + + KDV I+ + ++ A TL L L K E +
Sbjct: 22 LSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMV 79
Query: 227 VRF-----QSN-KFLIIRIWKTE--QASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 278
+F + N KFL+ KTE Q S T YI Q D + +
Sbjct: 80 QKFVEEVLRINYKFLMSP-IKTEQRQPSM---------------MTRMYIEQRDRLYNDN 123
Query: 279 TVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF-MKAVAVAGQETSLVTD 337
V F+ + +R + +L R+ ++P + + +G+ T +
Sbjct: 124 QV-----FAKYNV---SRLQPYLKL--RQALLELRPAKNVLIDGVLG---SGK-TWVA-- 167
Query: 338 YVLKLLGLDICADTMVGDEMRRGI---SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS 394
LD+C V +M I + + +L ++ ++ +D +
Sbjct: 168 -------LDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVL------EMLQKLLYQIDPN 212
Query: 395 TTFQICKFLKQMVHIMDV-TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV--LE 451
T + + I + + LL+ P L ++L NV +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVL------------LNVQNAK 257
Query: 452 FFEQMGFKCP----ER-KGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH 506
+ C R K V DFL T +I +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAAT---------------TTHISLDHHSMTLTPDE 302
Query: 507 MGQQLA-------SDLRVPYDKSQTHP------AALVKEKYGISKWELFRACFAREWLLM 553
+ L DL P + T+P A +++ G++ W+ W +
Sbjct: 303 VKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRD--GLATWD--------NWKHV 350
Query: 554 KRNSFVYIFKTFQLTFMSLICMTVFFRTEMSVGDLEGGN--KYFGALFFSLLNIMFNGMA 611
+ I E S+ LE K F L
Sbjct: 351 NCDKLTTII-------------------ESSLNVLEPAEYRKMFDRLS------------ 379
Query: 612 ELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSLLDSTIWIVLTYYTIGFAPAAS 671
VF IP LL S IW + +
Sbjct: 380 ----------VF---PPSA--------------HIPTILL-SLIWFDVIKSDV------- 404
Query: 672 RFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTFALLLIFSLGGFIIAKDDIEPF 731
V+ N L ++L+ K E
Sbjct: 405 -----------------------------MVVVNKLHKYSLV----------EKQPKE-- 423
Query: 732 LEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKR----RGF----- 782
P +Y + + ++ NE L ++++ + F
Sbjct: 424 ---STISIPSIYLELKVKLE----------------NEYALHRSIVDHYNIPKTFDSDDL 464
Query: 783 ---YNDSYWYW-IG--------IGALIGFSFLF-NFLFIAA-----LTYLNPIGDSNSTV 824
Y D Y+Y IG + F +F +F F+ T N G +T+
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 825 VEEDGDKKRASGNEVEGTQM 844
+ K N+ + ++
Sbjct: 525 QQLKFYKPYICDNDPKYERL 544
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 6e-11
Identities = 85/543 (15%), Positives = 163/543 (30%), Gaps = 124/543 (22%)
Query: 855 EEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAF---RPG 911
E+ P + +N + RLQ + A RP
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---------RLQPYLKLRQALLELRPA 150
Query: 912 VLTALMGVSGAGKTTL-MDVLAGRKTGGYIEGDI---KISGYPKKQETFARVSGYCEQTD 967
+ GV G+GKT + +DV K ++ I + + + Q D
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG--- 1024
P+ T + LR+ S +R L++ KP + L+ L V
Sbjct: 211 ---PNWTSRSDHSSNIKLRIHSIQAELRR---------LLKSKPYENCLLVLLNVQNAKA 258
Query: 1025 ----------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDT 1073
L T + K++T + A + I +D + L +++++ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 1074 GRTVVCTIHQPSIDIFEAF--DEL--------LLMKRGGRVIYAGPLGRESHKLIEYFEA 1123
V T + + I D L + + +I + E + + F+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 1124 VPGVPKIKDAYNPAT-----WMLEVSNISVENQLGVDFAEIYANSSLHQRNQE------- 1171
+ P A+ P W +V V SL ++ +
Sbjct: 378 LSVFP--PSAHIPTILLSLIW-FDVIKSDVM-----VVVNKLHKYSLVEKQPKESTISIP 429
Query: 1172 -LIKELSTPEPGSSELH--FPTKYSQP---FFTQFKASFWKQYWSYWRNPQYNAIRF-LM 1224
+ EL LH Y+ P + QY+ Y+ I L
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLK 482
Query: 1225 TATIA---IFFGLLFWD---KGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVE 1278
F ++F D QK N G++ + ++
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-----------------LQ 525
Query: 1279 RTVYYRE---RAAGMFSALSYALGQNRNFVIRKLTN----EHSLMLQVAV----EIIYVT 1327
+ +Y+ + L A+ +F+ + N +++ +L++A+ E I+
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 1328 AQT 1330
A
Sbjct: 583 AHK 585
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 45/229 (19%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KKQETF 956
L ++ + G +TA++G +G GK+TL G + + G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 957 ARVS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDV------------DTKKRKIFVD 1001
++ G Q P L+ + +Y DV + +KR VD
Sbjct: 80 MKLRESIGIVFQ----DPDNQLFSASVYQ-------DVSFGAVNMKLPEDEIRKR---VD 125
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
++ ++ L+D + LS Q+KR+ IA LV P ++ +DEPT+GLD +
Sbjct: 126 NALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 1062 IVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+M+ + + G T++ H + D + +MK GRVI G
Sbjct: 181 EIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA---L 418
S GQKKRV +LV KVL++DE + GLD +I K L +M + +T+I+A +
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
Query: 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL---EFFEQMGFKCPERKGVADFLQE 472
D++ ++ EG+++ G V E ++ + P + + L+E
Sbjct: 205 ----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 39/204 (19%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQ- 953
+ L VS + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 954 ------ETFARVSGYCEQTDIH-------------SPHVTLYESLLYSAWLRLSSDVDTK 994
TF QT ES L S + + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPG-ESPLNSLFYKKWIPKEEE 129
Query: 995 KRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054
+ +++E ++L L D G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1055 LDARAAAIVMRTVRNTVDTGRTVV 1078
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 58/273 (21%), Positives = 96/273 (35%), Gaps = 73/273 (26%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L VS V +TL++GP G+GK+TL+ + G L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---------------------E 61
Query: 247 GKITYCGHELNEFVPQRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G++ + ++ P Y I Q EMTV E L C G L +
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---ESPLNSL 118
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
++ + E + KA + L+ L L D G+ +S
Sbjct: 119 FYKKWIPK------EEEMVEKAFKI------------LEFLKLSHLYDRKAGE-----LS 155
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV----------HIMDV 412
GGQ K V G L+ K+++MDE G+ I + ++ H +D+
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215
Query: 413 TMIVALLQPAPETYDLFDDIILISEGQIVYHGP 445
+ + D + ++ GQI+ G
Sbjct: 216 VL------------NYIDHLYVMFNGQIIAEGR 236
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 48/229 (20%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 947
D + L VS PG AL+G SGAGK+T++ D+ +G I+I
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRID 114
Query: 948 GYPKKQETFA---RVSGYCEQTDIHSPHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDEV 1003
G Q T A G Q D + T+ +++ Y R++ + DEV
Sbjct: 115 GQDISQVTQASLRSHIGVVPQ-DTVLFNDTIADNIRYG---RVTAGN----------DEV 160
Query: 1004 MELVELKPLRDALVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053
+ + DA++ P G+ LS +++R+ IA ++ P II +DE TS
Sbjct: 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATS 219
Query: 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
LD + ++ V RT + H+ S + A D++L++K G
Sbjct: 220 ALDTSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 915 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARVSGYCEQTDIHSP 971
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031
H+++Y ++ Y LR V+ +R V E+ E + + L D LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1032 RLTIAVELVANPSIIFMDEPTSGLDAR 1058
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 30/165 (18%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKKQETFA 957
LL+ + + G +G GK+TLM +A + G+ + + +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT----------- 497
Query: 958 RVSGYCEQ-TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
Y E D ++ + + S V TK+ + + + D +
Sbjct: 498 ---VYVEHDIDGTHSDTSVLDFV-------FESGVGTKEA---IKDKLIEFGFT---DEM 541
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
+ +P ++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-07
Identities = 45/264 (17%), Positives = 82/264 (31%), Gaps = 41/264 (15%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---------HENLRVRF--- 229
+ D++ S ++GP GAGK+TL+ L G+L HEN R+ +
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
Query: 230 --------QSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 281
+K I Q + A + +
Sbjct: 744 HAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIA 803
Query: 282 ETLDFSGRCLGVGTRYELLAELSRREKQQGIKP-----------DPEIDAFMKAVAV--- 327
L + K + P +++ K VA
Sbjct: 804 GIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDM 863
Query: 328 -----AGQETSLVTDYVLKLL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKV 381
+GQ L + + L + + + + RG+SGGQK ++ +
Sbjct: 864 KEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-RGLSGGQKVKLVLAAGTWQRPHL 922
Query: 382 LLMDEISTGLDSSTTFQICKFLKQ 405
+++DE + LD + + K LK+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALKE 946
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 44/337 (13%), Positives = 94/337 (27%), Gaps = 49/337 (14%)
Query: 102 QLMESILRIVE--EDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTL 159
+++++ ++VE + FL ++ I E R V RAL TL
Sbjct: 273 VIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAR----------EVTLRALKTL 322
Query: 160 LNVALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
V S DV V + + A
Sbjct: 323 RRVG----NVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLI 378
Query: 220 KLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 279
+ + ++ + I+ E+ + I + + + D
Sbjct: 379 DERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCN 438
Query: 280 VRETLDFSGRC--------LGVGTRYELLAE-----------LSRREKQQGIKPDPEIDA 320
+L + + L RY + ++ + +
Sbjct: 439 CEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV 498
Query: 321 FMKAVAVAGQETSLVTDYVL------------KLLGLDICADTMVGDEMRRGISGGQKKR 368
+++ + V D+V KL+ + + +SGG K +
Sbjct: 499 YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI--AMPISALSGGWKMK 556
Query: 369 VTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405
+ ++ A +LL+DE + LD+ + +L
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 37/224 (16%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKK 952
+ + L S++ G AL+G +G+GK+T+ +L R Y EGDIKI G
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVN 84
Query: 953 QETFA---RVSGYCEQTDIHSPHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVE 1008
+ + G Q D + T+ ++LY +L +D +EV++ +
Sbjct: 85 KYNRNSIRSIIGIVPQ-DTILFNETIKYNILYG---KLDATD----------EEVIKATK 130
Query: 1009 LKPLRDALVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
L D + LP G+ LS +R+R+ IA L+ +P I+ DE TS LD++
Sbjct: 131 SAQLYDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
+ + V + + RT++ H+ S I A + ++L+ +G
Sbjct: 190 TEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 19/109 (17%)
Query: 350 DTMVGDEMRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
DT+VG+ +G+ SGG+++R+ L+ K+++ DE ++ LDS T + K ++ +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 408 HIMDVTMIV-----ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ T+I+ + + A + IIL+++G+IV G ++L+
Sbjct: 203 K--NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 74/245 (30%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKI 946
D +L +++ + + G + ++G SG+GK+TL G + I
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---------ENGQVLI 68
Query: 947 SGYPKK---------------QET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989
G+ Q+ R ++ +++ +
Sbjct: 69 DGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA------- 106
Query: 990 DVDTKKRKIFVDEVME----------LVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1039
+ V++V+ + EL+ + +VG G LS QR+R+ IA L
Sbjct: 107 -----NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARAL 160
Query: 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099
V NP I+ DE TS LD + ++MR + GRTV+ H+ S + A D +++M+
Sbjct: 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-VKNA-DRIIVME 217
Query: 1100 RGGRV 1104
+G V
Sbjct: 218 KGKIV 222
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 4e-05
Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 85/274 (31%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
IL +++ +K + ++G G+GK+TL L RF
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLT---------KLIQRFY------------IP 61
Query: 245 ASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
+G++ GH+L P R + Q + + +
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQ-----------DNVLLNR------------- 97
Query: 302 ELSRREKQQGI---KPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEM 357
S + I P ++ + A +AG D++ +L G + T+VG+
Sbjct: 98 --SIIDN---ISLANPGMSVEKVIYAAKLAG-----AHDFISELREGYN----TIVGE-- 141
Query: 358 RRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
+G SGGQ++R+ LV K+L+ DE ++ LD + I + + ++ T+I
Sbjct: 142 -QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVI 198
Query: 416 V-----ALLQPAPETYDLFDDIILISEGQIVYHG 444
+ + ++ A D II++ +G+IV G
Sbjct: 199 IIAHRLSTVKNA-------DRIIVMEKGKIVEQG 225
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 28/170 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEG----DIKISGYPKK 952
L +V+ G ++G SGAGKTT M ++AG + G Y + P +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 953 QETFARV----SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE 1008
V + Y P++T +E++ + S + +KR V+EV ++++
Sbjct: 81 DRKIGMVFQTWALY--------PNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILD 129
Query: 1009 LKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
+ + + P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 130 IHHVLNHF---PR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 47/229 (20%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 947
+D Q+L +S +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 948 GYPKKQETFA---RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM 1004
G P + G+ Q D T+ E+L Y + +++
Sbjct: 63 GQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYG-----------LEGDYTDEDLW 110
Query: 1005 ELVELKPLRDALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTS 1053
++++L R + +P + L+TE QR+RL IA + NP I+ +DE T+
Sbjct: 111 QVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
LD+ + ++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 169 SLDSESESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 66/218 (30%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
QIL+D+S +P+ + GP G GK+T+ +L RF +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIF---------SLLERFY------------QP 54
Query: 245 ASGKITYCGHELNEFVPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELL 300
+G+IT G ++ + ++SQ + G T+RE L Y
Sbjct: 55 TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG--TIRENL-----------TY--- 98
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEMRR 359
G++ D + + + +A +V + L+ T VG+ R
Sbjct: 99 ----------GLEGDYTDEDLWQVLDLAF-----ARSFVENMPDQLN----TEVGE---R 136
Query: 360 GI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
G+ SGGQ++R+ + K+L++DE + LDS +
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 31/169 (18%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
+ VS R G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 958 RVSGYCEQTDIHS--------PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
R ++ H+T+Y+++ + + + R V E++ + L
Sbjct: 87 R--------NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRL 135
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
+ + + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 136 ESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 4e-08
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
L+ +S + PG + ++G SG GKTTL+ LAG + G I I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 958 RVSGYCEQTDIHS----PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
R GY Q PH+T+Y ++ Y ++R ++ ++EL + L
Sbjct: 80 RRLGYLVQ----EGVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLELTGISELA 132
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
P + LS Q++R +A L +P +I +DEP S LD +
Sbjct: 133 GRY---P--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 42/201 (20%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L ++S + PG L+G +G+GK+TL+ EG+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDG------------ 81
Query: 961 GYCEQTDIHSPHVTLY-----------ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
S +TL + ++S R + D + + +V + V L
Sbjct: 82 -----VSWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGL 134
Query: 1010 KPLR-------DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ + D ++ G LS ++ + +A +++ I+ +DEP++ LD I
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 1063 VMRTVRNTVDTGRTVVCTIHQ 1083
+ RT++ TV+ +
Sbjct: 194 IRRTLKQAF-ADCTVILCEAR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 55/226 (24%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L ++ G L A+ G +GAGKT+L+ ++ G + EG IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLR--------LSSDVDTKKRKIFVDEVMELVELK 1010
+S +C Q +W+ + D + V++ +L+
Sbjct: 101 IS-FCSQN----------------SWIMPGTIKENIIGVSYDEYRY----RSVIKACQLE 139
Query: 1011 ------PLRDA-LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+D ++G G+ LS QR R+++A + + + +D P LD +
Sbjct: 140 EDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 1064 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ + +T + + ++ + D++L++ G + G
Sbjct: 199 FESCVCKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 57/296 (19%), Positives = 108/296 (36%), Gaps = 89/296 (30%)
Query: 165 NTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHEN 224
+ L +LKD++ ++ ++ + G GAGKT+L++ + G+L
Sbjct: 32 RKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--- 88
Query: 225 LRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTVRET 283
E + GKI + G ++ SQ+ + G T++E
Sbjct: 89 ------------------EPSEGKIKHSG----------RISFCSQNSWIMPG--TIKEN 118
Query: 284 LDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343
+ +G Y+ + + + I A L D +
Sbjct: 119 I--------IGVSYD-------EYRYRSV-----IKA-----------CQLEED--ISKF 145
Query: 344 -GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST---TF 397
D + ++G+ GI SGGQ+ R++ + A + L+D LD T F
Sbjct: 146 AEKD---NIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 199
Query: 398 Q--ICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ +CK + I+ VT + L+ A D I+++ EG ++G +
Sbjct: 200 ESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILILHEGSSYFYGTFSELQN 247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-ARE 574
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
GRT + H+ S + A D + GG ++ G
Sbjct: 575 GRTTIVIAHRLST-VRNA-DVIAGFD-GGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 951
+L +S + G AL+G SG GK+T++ D +AG + + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 952 KQETFARVSGYCEQTDIHSPHVTLY-----ESLLYSAWLRLSSDVDTKKRKIFVDEVMEL 1006
KQ V Q I S L+ E++ Y R+ S +E++
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRA 1144
Query: 1007 VELKPLRDALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
+ + + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 1058 RAAAIVMRTVRNTVDTGRTVVCTIH 1082
+ +V + + GRT + H
Sbjct: 1205 ESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 57/298 (19%), Positives = 92/298 (30%), Gaps = 45/298 (15%)
Query: 350 DTMVGDEMRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
DT+VG+ RG SGGQK+R+ LV K+LL+DE ++ LD+ + + L +
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 408 HIMDVTMIV-----ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE---FFEQMGFK 459
T IV + ++ A D I G IV G D ++ + ++
Sbjct: 574 E--GRTTIVIAHRLSTVRNA-------DVIAGFDGGVIVEQGNHDELMREKGIYFKL-VM 623
Query: 460 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDLRVPY 519
+ E KD+ ++ + Q
Sbjct: 624 TQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEA 683
Query: 520 DKSQTHPAALVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLI---CMT 576
PA+ W + + + EW F I S+I +
Sbjct: 684 LDEDVPPASF---------WRILKLN-STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVG 733
Query: 577 VFFRTEMSVGDLEGGNKY---------FGALFFSLLNIMFNGMAELSMTVLRLPVFYK 625
VF + N + + F L F E+ LR VF
Sbjct: 734 VFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 28/160 (17%)
Query: 916 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARV----SGYCEQTDI 968
L+G SG+GK+TL+ +AG + T G I + ++ P K V + Y
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALY------ 87
Query: 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
PH+T+Y+++ + LR + + K+ V EV +++ + L + P LS
Sbjct: 88 --PHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKLLNRY---PW--QLSGG 137
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1066
Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 48/222 (21%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L ++ G L A+ G +GAGKT+L+ ++ G + EG IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD-----TKKRKIFVDEVMELVELK--- 1010
+S +C Q +W+ + + + V++ +L+
Sbjct: 71 IS-FCSQF----------------SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDI 113
Query: 1011 ---PLRDA-LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+D ++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 114 SKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ +T + + ++ + D++L++ G + G
Sbjct: 173 CVCKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 57/284 (20%), Positives = 108/284 (38%), Gaps = 92/284 (32%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---------------------PS 61
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
GKI + G ++ SQ + G T++E + F G Y+
Sbjct: 62 EGKIKHSG----------RISFCSQFSWIMPG--TIKENIIF-------GVSYD------ 96
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL-GLDICADTMVGDEMRRGI-- 361
+ + + I A L D + D + ++G+ GI
Sbjct: 97 -EYRYRSV-----IKA-----------CQLEED--ISKFAEKD---NIVLGE---GGITL 131
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST---TFQ--ICKFLKQMVHIMDVTMIV 416
SGGQ+ R++ + A + L+D LD T F+ +CK + I+ VT +
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKM 190
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL----EFFEQM 456
L+ A D I+++ EG ++G + +F ++
Sbjct: 191 EHLKKA-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 50/224 (22%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
L+ ++ + G L A++G G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD-----TKKRKIFVDEVMELVELK--- 1010
V+ Y Q AW++ S + + + + V++ L
Sbjct: 68 VA-YVPQQ----------------AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110
Query: 1011 ---PLRDA-LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
P D +G GVN LS Q++R+++A + +N I D+P S +DA +
Sbjct: 111 EILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1067 V--RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V + +T + H + D +++M GG++ G
Sbjct: 170 VIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMS-GGKISEMG 210
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 58/307 (18%), Positives = 107/307 (34%), Gaps = 100/307 (32%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
L ++ + + ++G G GK++L+ AL ++ +
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---------------------KV 58
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
G + G + AY+ Q + + ++RE + F G + E
Sbjct: 59 EGHVAIKG----------SVAYVPQQAWIQND--SLRENILF-------GCQLE------ 93
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL-GLDICADTMVGDEMRRGI-- 361
+ + I A +L+ D L++L D T +G+ +G+
Sbjct: 94 -EPYYRSV-----IQA-----------CALLPD--LEILPSGD---RTEIGE---KGVNL 128
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST---TFQIC----KFLKQMVHIMDVTM 414
SGGQK+RV+ + A + L D+ + +D+ F+ LK I+ VT
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL-VTH 187
Query: 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474
++ L D II++S G+I G +L A+FL+
Sbjct: 188 SMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYA 230
Query: 475 SKKDQEQ 481
S
Sbjct: 231 SHHHHHH 237
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKKQET--- 955
L VS + G AL+G SG+GK+T+ ++ T Y G I + G+ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 956 ----FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDE-VMELVEL 1009
FA VS Q ++H + T+ ++ Y+A + ++ R+ E + +
Sbjct: 415 LRRHFALVS----Q-NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM--- 466
Query: 1010 KPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
P D ++G G + LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 467 -PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-05
Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 66/220 (30%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ L VS + + L+G G+GK+T+ NL RF
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIA---------NLFTRFY------------ 393
Query: 243 EQASGKITYCGHELNEFVPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYE 298
+ SG I GH++ ++ R A +SQ+ L + T+ + Y
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND--TIANNI-----------AY- 439
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEM 357
+ + + +A A +++ + GL DT++G+
Sbjct: 440 ------------AAEGEYTREQIEQAARQAH-----AMEFIENMPQGL----DTVIGE-- 476
Query: 358 RRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
G +SGGQ++RV L+ A VL++DE ++ LD+ +
Sbjct: 477 -NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 34/169 (20%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
L ++S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 958 RVSGYCEQTDIHS--------PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL 1009
DI PH+ + ++L + +R+ + KR V + +++
Sbjct: 72 H--------DIAFVYQNYSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKI 117
Query: 1010 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
+ L D LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 118 EHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKKQET--- 955
L +++ G AL+G SG+GK+T+ ++ T Y EG I + G+ ++ T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLAS 414
Query: 956 ----FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKK--RKIFVDE-VMELVE 1008
A VS Q ++H + T+ ++ Y A S ++ R + + + ++
Sbjct: 415 LRNQVALVS----Q-NVHLFNDTVANNIAY-ARTEEYSREQIEEAARMAYAMDFINKM-- 466
Query: 1009 LKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
D ++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 467 --DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 66/221 (29%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
R+V L++++ + + L+G G+GK+T+ +L RF
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIA---------SLITRFY----------- 393
Query: 242 TEQASGKITYCGHELNEFVPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRY 297
+ G I GH+L E+ A +SQ+ L + TV + Y
Sbjct: 394 -DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND--TVANNI-----------AY 439
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDE 356
E SR + +A +A D++ K+ GL DT++G+
Sbjct: 440 ARTEEYSREQ-------------IEEAARMAY-----AMDFINKMDNGL----DTIIGE- 476
Query: 357 MRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
G +SGGQ++R+ L+ + +L++DE ++ LD+ +
Sbjct: 477 --NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 1e-06
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 893 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 949
V + + + G + L+G +GAGKTT + +AG R G I I+
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 950 PKKQETFARVS-GYCEQTDIHSP-------HVTLYESLLYSAWLRLSSDVDTKKRKIFVD 1001
P G P +T+YE+L+ A+ R D + K ++
Sbjct: 74 P----AHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLE 120
Query: 1002 EVMELV-ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060
+ L LK L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1061 AIVMRTVRNTVDTGRTV 1077
+ V ++ G T+
Sbjct: 176 SEVFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 51/150 (34%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ +K + V ++ L+G GAGKTT + A+AG ++R
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG----------------LVRAQ-- 59
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHH--------GEMTVRETLDFSGRCLGVG 294
GKI + G ++ I++ + E+TV E L +G
Sbjct: 60 ---KGKIIFNGQDITNKPAHV----INRMGIALVPEGRRIFPELTVYENLM-----MGAY 107
Query: 295 TR-------------YELLAELSRREKQQG 311
R + L L R KQ G
Sbjct: 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 28/160 (17%)
Query: 916 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARV----SGYCEQTDI 968
L+G SG GKTT + ++AG T G I GD ++ P K + V + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVW------ 95
Query: 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
PH+T+YE++ + ++ + KR V EL++++ L + P LS
Sbjct: 96 --PHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEELLNRY---PA--QLSGG 145
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1066
QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 33/236 (13%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 945
K G +Q L++VS G + ++G SGAGK+TL+ + R T G + +
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91
Query: 946 ISGYPKKQETFARVSGYCEQTDI----------HSPHVTLYESLLYSAWLRLSSDVDTKK 995
++ + + T AR I S T++ ++ L L + +
Sbjct: 92 LTTLSESELTKAR-------RQIGMIFQHFNLLSS--RTVFGNVALP--LELD-NTPKDE 139
Query: 996 RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
K V E++ LV L D+ P + LS Q++R+ IA L +NP ++ D+ TS L
Sbjct: 140 VKRRVTELLSLVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
D ++ +++ G T++ H+ + + D + ++ G +I +
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVIS-NGELIEQDTV 248
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT-------M 414
SGGQK+RV L KVLL D+ ++ LD +TT I + LK + + +T M
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224
Query: 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474
V + D + +IS G+++ V E F P+ F+Q
Sbjct: 225 DVV--------KRICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTL 268
Query: 475 SKKDQEQYWFR 485
E Y R
Sbjct: 269 HLDIPEDYQER 279
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 52/283 (18%), Positives = 101/283 (35%), Gaps = 87/283 (30%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
P+ +VQ+L+ ++ + P ++T L+GP G+GK+T+ L
Sbjct: 27 PNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLY------- 69
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGE-----MTVRETLDFSGR 289
+ GK+ G L ++ A + Q E + RE +
Sbjct: 70 -----QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ------EPLLFGRSFRENI----- 113
Query: 290 CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDIC 348
Y G+ P ++ +G D++ G D
Sbjct: 114 ------AY-------------GLTRTPTMEEITAVAMESG-----AHDFISGFPQGYD-- 147
Query: 349 ADTMVGDEMRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
T VG+ G SGGQ++ V L+ ++L++D ++ LD+ ++ + L +
Sbjct: 148 --TEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 407 VHIMDVTMIV-----ALLQPAPETYDLFDDIILISEGQIVYHG 444
T+++ +L + A I+ + EG + G
Sbjct: 203 PEWASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 46/218 (21%), Positives = 76/218 (34%), Gaps = 69/218 (31%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 951
Q+L ++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 952 K---------------QET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTK 994
QE F R + E++ Y
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG-----------L 117
Query: 995 KRKIFVDEVMELVELKPLRDALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSI 1045
R ++E+ + D + G P G G LS QR+ + +A L+ P +
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 1046 IFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1082
+ +D TS LDA V R + + RTV+
Sbjct: 178 LILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 916 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKKQETFARVSGYCEQTDIHS---- 970
L+G SG GKTT + ++AG + G I I V+ + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD--------KLVADPEKGIFVPPKDRD 82
Query: 971 -----------PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
PH+T+Y+++ + LR + +R V EV EL+ L L +
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNRK--- 136
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1066
P LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 137 PR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 916 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARV----SGYCEQTDI 968
L+G SG GKTT + +LAG + T G I D+ ++ P K V + Y
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALY------ 87
Query: 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028
PH+T++E++ + R S + +KR V E+ + + L D P LS
Sbjct: 88 --PHMTVFENIAFPLRARRISKDEVEKR---VVEIARKLLIDNLLDRK---PT--QLSGG 137
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1066
Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 1025 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1079 CTIHQPSIDIFEAFDELLLMKRGG 1102
H ++ +A D ++ +
Sbjct: 309 LVSHDE--ELKDAADHVIRISLEN 330
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 48/221 (21%), Positives = 78/221 (35%), Gaps = 67/221 (30%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
D IL+ +S V P + ++GP G+GK+TL LAG E+ V
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEV--------------- 74
Query: 243 EQASGKITYCGHELNEFVP-QRTCA-------Y---ISQHDLHHGEMTVRETLDFSGRCL 291
G + + G +L P R Y I
Sbjct: 75 --TGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP---------------------- 110
Query: 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
GV ++ L L+ +G + D F + + LL + +
Sbjct: 111 GVSNQFFLQTALNAVRSYRGQETLDRFD-FQDLMEEK-----------IALLKMP---ED 155
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
++ + G SGG+KKR +M V ++ ++DE +GLD
Sbjct: 156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 71/198 (35%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 947
++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 948 GYPKK---------------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS-SDV 991
G+ K Q+ S T+ E++L R + +D
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATD- 444
Query: 992 DTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE-----------QRKRLTIAVELV 1040
+EV+E ++ D ++ LP G TE Q++RL+IA +
Sbjct: 445 ---------EEVVEAAKMANAHDFIMNLP--QGYDTEVGERGVKLSGGQKQRLSIARIFL 493
Query: 1041 ANPSIIFMDEPTSGLDAR 1058
NP I+ +DE TS LD
Sbjct: 494 NNPPILILDEATSALDLE 511
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1090
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1091 AFDELLLM-----KRGGRVI 1105
A D ++ + V+
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 50/221 (22%), Positives = 73/221 (33%), Gaps = 71/221 (32%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
ILK V+ +V + L+GP GAGK+TL LAG V
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTV--------------- 57
Query: 243 EQASGKITYCGHELNEFVP-QRTCA-------Y---ISQHDLHHGEMTVRETLDFSGRCL 291
G+I G + E P +R Y +
Sbjct: 58 --ERGEILLDGENILELSPDERARKGLFLAFQYPVEVP---------------------- 93
Query: 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
GV L L + + + F V A L+LL D ++
Sbjct: 94 GVTIANFLRLALQAKL-----GREVGVAEFWTKVKKA-----------LELLDWD---ES 134
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLD 392
+ + G SGG+KKR ++LV ++DE +GLD
Sbjct: 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1403 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.98 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.9 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.86 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.85 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.85 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.84 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.82 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.8 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.8 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.78 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.78 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.72 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.72 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.72 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.72 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.72 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.69 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.69 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.69 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.68 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.68 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.68 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.67 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.67 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.67 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.67 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.64 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.63 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.61 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.61 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.6 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.6 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.59 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.58 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.58 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.55 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.54 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.52 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.52 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.5 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.5 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.5 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.5 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.49 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.47 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.47 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.47 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.46 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.45 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.44 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.44 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.44 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.43 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.43 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.43 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.43 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.42 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.41 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.4 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.4 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.4 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.39 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.38 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.36 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.35 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.35 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.34 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.31 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.3 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.29 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.28 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.25 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.25 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.24 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.23 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.23 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.22 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.21 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.21 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.2 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.2 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.19 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.18 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.17 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.17 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.17 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.15 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.14 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.14 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.14 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.13 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.13 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.12 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.11 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.11 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.07 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.06 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.05 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.05 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.04 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.03 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.03 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.03 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.02 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.02 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.02 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.01 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.0 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.98 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.97 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.97 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.96 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.93 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.91 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.89 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.88 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.87 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.86 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.86 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.86 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.85 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.83 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.81 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.81 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.77 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.76 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.75 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.74 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.74 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.69 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.68 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.66 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.64 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.64 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.61 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.6 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.6 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.6 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.59 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.58 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.57 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.57 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.56 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.54 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.52 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.51 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.47 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.44 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.43 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.42 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.42 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.34 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.34 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.33 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.31 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.3 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.3 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.3 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.28 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.24 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.24 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.23 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.23 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.22 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.17 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.16 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.14 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.12 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.01 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.96 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.96 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.95 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.95 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.94 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.94 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.93 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.92 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.88 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.85 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.84 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.83 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.77 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.74 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.74 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.69 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.68 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.65 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.61 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.6 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.52 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.51 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.49 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.43 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.42 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.39 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.38 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.38 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.37 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.37 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.36 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.36 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.35 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.33 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.33 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.31 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.3 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.3 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.3 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.25 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.25 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.22 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.21 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.21 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.19 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.18 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.18 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.18 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.15 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.13 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.11 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.09 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.05 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.04 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.03 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.01 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.99 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.98 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.92 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.91 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.85 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.84 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.8 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.8 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.79 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.78 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.78 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.76 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.74 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.69 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.67 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.64 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.59 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.56 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.55 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.51 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.49 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.48 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.46 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.44 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.42 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.39 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.37 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.36 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.36 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.36 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.26 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.2 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.2 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.17 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.16 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.13 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.1 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.09 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.06 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.03 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.0 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.99 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.97 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.97 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.96 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.95 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.94 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.9 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.9 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.9 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.75 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.75 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.75 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.75 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 95.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 95.7 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.67 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.65 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.62 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.57 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.55 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.54 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.51 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.5 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.48 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.47 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.46 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.45 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.44 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.44 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.42 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.4 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.39 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.34 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.32 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.29 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.28 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.27 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.26 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.25 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.23 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.22 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.21 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.2 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.19 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.19 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.17 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.16 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.11 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.06 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.04 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.03 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.02 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.01 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.01 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 94.96 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.95 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.89 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 94.84 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.82 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.81 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.77 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.77 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.74 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.73 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.69 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.68 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.66 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.63 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.61 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.6 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.55 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.49 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.45 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.44 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 94.35 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.33 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.29 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.27 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.27 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.27 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.27 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.26 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.24 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.23 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.2 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.19 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.19 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.18 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.15 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.14 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.11 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.1 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.09 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.08 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.07 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.05 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 93.99 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.98 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 93.94 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-73 Score=776.82 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=179.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++++++.. ...++|+|||++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEEh
Confidence 58999998876421 234699999999999999999999999999999999998663 479999999987
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
+. ..+|+.++||||++.++.. |++|||.|+. .+.+.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 54 5678899999999998864 9999998763 122233 234778888877743 3577888655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
. +||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+++|+++. ...||+|+||+ +
T Consensus 1216 ~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1216 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS-N 1290 (1321)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-S
T ss_pred c-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE-C
Confidence 4 699999999999999999999999999999999999999999999876 48999999999873 56799999998 5
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 899999984
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-66 Score=701.80 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=172.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++.. .+..+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEc
Confidence 57889988765311 124599999999999999999999999999999999998764 489999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-------CcccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-------PLRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.++ ..||+||+.++...+ ..+.+ .+++.++..++. +-.|+.+|..+
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC---CCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 43 44677899999999776 579999998753211 12222 234455554443 34566777543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..||||||||++|||||+++|+||+|||||||||+.++..|++.|++.. +|+|||+++|+++. + ..||++++|+ +
T Consensus 1170 -~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1170 -TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQ-N 1244 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEE-T
T ss_pred -CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999998864 59999999999974 4 6699999998 5
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=557.43 Aligned_cols=188 Identities=27% Similarity=0.332 Sum_probs=157.8
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
.|+++|+++++||++||+||||||||||+++|+|...+ .+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 68999999999999999999999999999999997653 3677765 23589999998777889999988
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
........ ...+.++++++.+++.+..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 65311110 112457889999999988887654 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCCCc
Q 037155 1060 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPLGR 1112 (1403)
Q Consensus 1060 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~~~ 1112 (1403)
+..+++.|++++ +.|.|||+++||++ .+...||++++|+. .|++...|+...
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999986 57788999999973 266777888643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=547.24 Aligned_cols=188 Identities=26% Similarity=0.329 Sum_probs=156.8
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 68999999999999999999999999999999997653 3677764 23589999998777889999887
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
......... ..+.++++++.+++.+..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCCC-------HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 653111110 12347789999999877777654 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCCCc
Q 037155 1060 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPLGR 1112 (1403)
Q Consensus 1060 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~~~ 1112 (1403)
+..+++.|++++ +.|.|||++|||++ ++...||++++|++ .|+++..|+..+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999999999987 45999999999986 57789999999973 267777888743
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=536.14 Aligned_cols=203 Identities=22% Similarity=0.251 Sum_probs=162.1
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
..|+++|++|++||++||+||||||||||+++|+|...+ .+|+|.+++. .++|++|+....+..||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 357888999999999999999999999999999997653 3788887653 47999998776678999999
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+.+...... .. ....++++++.++|.+..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 351 l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHhhhhcc--ch----hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 987421111 01 12346788999999888887654 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCCCcchhHHHHHHHhC
Q 037155 1059 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG-GRVIYAGPLGRESHKLIEYFEAV 1124 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~g-G~~~~~g~~~~~~~~~~~~f~~~ 1124 (1403)
++..+++.|+++++ .|+|||++|||++ ++...||++++|+.+ |.....++.......+..++..+
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 99999999999975 5899999999986 577889999999731 34455555433333445555443
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=548.32 Aligned_cols=218 Identities=23% Similarity=0.264 Sum_probs=138.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHH---------------------HHHhccccccchhhcccchhhhhhhcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLHENLRVRFQSNKFLIIRIWK 241 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL---------------------~~LaG~~~~~~~~~~~~~~~~~~~~~~ 241 (1403)
..++|+|||++|++||+++|+||||||||||| +.+.|...++.+.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~-------------- 95 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDA-------------- 95 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSE--------------
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccc--------------
Confidence 35689999999999999999999999999997 6666655443110
Q ss_pred CCCcceEEEECCccCCCCCccceEEEeccCCCC-------------------CCCCCHHHHHHhhcccccccchhhHHHH
Q 037155 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRYELLAE 302 (1403)
Q Consensus 242 ~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~-------------------~~~lTVrE~l~f~~~~~~~~~~~~~~~~ 302 (1403)
.....|.|.++|.+.... +++.++||+|...+ ++.+||+||+.+.......
T Consensus 96 i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~--------- 165 (670)
T 3ux8_A 96 IEGLSPAISIDQKTTSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT--------- 165 (670)
T ss_dssp EESCCCEEEESSCC------CCBHHHHTTCC-------------------------CC----------------------
T ss_pred eeccccceEecCchhhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc---------
Confidence 001256788887654332 33456666664332 4578999999874221100
Q ss_pred hhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCc-
Q 037155 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK- 380 (1403)
Q Consensus 303 ~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~- 380 (1403)
..+... .+...+ +.... -.+++.+||++. .|..+++ |||||||||+|||||+.+|+
T Consensus 166 --~~~~~~-------~~~~~~-------~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~ 223 (670)
T 3ux8_A 166 --EKEAQI-------ARLILR-------EIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTG 223 (670)
T ss_dssp -----------------------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCS
T ss_pred --hhhhHH-------HHHHHH-------HHHHH-HHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCC
Confidence 000000 000000 00011 135888999875 6788876 99999999999999999988
Q ss_pred -EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhH
Q 037155 381 -VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNV 449 (1403)
Q Consensus 381 -illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~ 449 (1403)
+|+|||||+|||+.++.++.+.|+++.+ .|.|+|++.|... ....+|+|++| ++|++++.|+++++
T Consensus 224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 224 VLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999999999999999999975 4888888776543 45679999999 89999999998776
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=550.59 Aligned_cols=184 Identities=22% Similarity=0.283 Sum_probs=148.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ..
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------------------------G~i--~g~~~~~---~~ 495 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------------------------GQV--DGFPTQE---EC 495 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------------------------TCS--TTCCCTT---TS
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------------------------CCc--CCCcccc---ce
Confidence 469999999999999999999999999999999995 111 2322111 12
Q ss_pred eEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++|++|+. .+++.+||.|++.+ ...+. ...++.+++.
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~---------------------------------------~~~v~~~L~~ 534 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT---------------------------------------KEAIKDKLIE 534 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC---------------------------------------HHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH---------------------------------------HHHHHHHHHH
Confidence 368999874 67889999999975 11100 0124567899
Q ss_pred cCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 343 LGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 343 lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+||+ +..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ .+.|+|++.| .
T Consensus 535 lgL~~~~~~~~~~~-----LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-d 604 (986)
T 2iw3_A 535 FGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-D 604 (986)
T ss_dssp TTCCHHHHHSBGGG-----CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-C
T ss_pred cCCChhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEEC-C
Confidence 9995 677888876 999999999999999999999999999999999999999999987 3778777655 5
Q ss_pred chhHHhhcCEEEEEcCCeEE-EecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIV-YHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv-~~G~~~~~~ 450 (1403)
..++.+++|+|++|++|+++ +.|+.+++.
T Consensus 605 l~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 605 SVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 56788899999999999997 789887653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=523.75 Aligned_cols=189 Identities=20% Similarity=0.208 Sum_probs=154.4
Q ss_pred eEeeeeEEEEeCC-----eEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCC
Q 037155 899 QLLHSVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 899 ~iL~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 973 (1403)
.+++|+|+++++| |++||+||||||||||+++|+|...+. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 4688889888888 789999999999999999999976532 4541 11 23589999987766678
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+|++.... +. .... ...++++++.++|.+..++.++ .|||||||||+|||+|+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--cccc---HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875321 11 1111 2346789999999988887654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCCCc
Q 037155 1054 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPLGR 1112 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~~~ 1112 (1403)
|||+.++..++++|++++ +.|.|||++|||++ ++...+|++++|+. .|+++..|++..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999986 45999999999986 57788999999984 278888888754
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=391.00 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=188.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
-++++|+++.+... .+...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 47788887665311 1235799999999999999999999999999999999998764 489999999886
Q ss_pred Chh------hhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 037155 952 KQE------TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025 (1403)
Q Consensus 952 ~~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1025 (1403)
... ..++.+|||+|++.+++.+||+||+.|+...+. .+.++.+++++++++.+||.+..++.+ ..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 345666778999999999998888764 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||+|||||+.+|+||||||||||||+.++..++++|+++.+ .|+|||++||+++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999986 57788999999985 899
Q ss_pred EEecCCC
Q 037155 1105 IYAGPLG 1111 (1403)
Q Consensus 1105 ~~~g~~~ 1111 (1403)
++.|+..
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999853
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=369.75 Aligned_cols=204 Identities=24% Similarity=0.365 Sum_probs=174.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h----hcceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T----FARVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 970 (1403)
..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.+|||+|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 4699999999999999999999999999999999998764 489999999876431 1 134599999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
+.+||+||+.++...+.......++..+.+.++++.++|.+. .+..+ ..|||||||||+|||||+.+|++||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999998655432233455666778899999999874 36553 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+|||+.++..+++.|++++++ |+|||++||+++ +.+.||++++|++ |+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 999999999999999999999765 999999999975 4588999999985 8999888763
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=422.23 Aligned_cols=197 Identities=26% Similarity=0.390 Sum_probs=145.2
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHH---------HhhcCCCC-Cc---eeE------EEEEEcCccCChh-----
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GDIKISGYPKKQE----- 954 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~-~~---~~~------G~i~i~g~~~~~~----- 954 (1403)
..|+|||++|++|++++|+|+||||||||+ +.+.+... .+ ... +.+.+++.+....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 369999999999999999999999999997 33333211 01 122 3355555442110
Q ss_pred -h--------------------------------------hcceeeEeecCCCCCCC-----------------------
Q 037155 955 -T--------------------------------------FARVSGYCEQTDIHSPH----------------------- 972 (1403)
Q Consensus 955 -~--------------------------------------~~~~~gyv~Q~~~~~~~----------------------- 972 (1403)
. ..+..||+.++..++|.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00124777777665553
Q ss_pred ---------CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 973 ---------VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 973 ---------lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
+||.|++.|.... .....+.++|+.+||.... .+. .+..|||||||||+||+||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq-~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQ-PATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTC-CSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccC-CccCCCHHHHHHHHHHHHHhhCC
Confidence 6778877764321 1123467899999996532 222 23479999999999999999876
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1044 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|++++|. +||++++.|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999975 456799999993 47999999985
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=389.57 Aligned_cols=204 Identities=26% Similarity=0.372 Sum_probs=181.2
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++..+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+|||+|++.++|++|
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 456799999999999999999999999999999999998764 489999999886432 23567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+. .+.++.+++++++++.++|.+..++.+. +|||||||||+|||||+.+|+||||||||||
T Consensus 92 V~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 92 VAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp HHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999999876642 3456667789999999999998887654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||+..+..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+..
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999755 999999999986 68889999999985 8999999853
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=375.30 Aligned_cols=216 Identities=25% Similarity=0.380 Sum_probs=183.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 367777776541 124599999999999999999999999999999999998664 489999999886
Q ss_pred C--h---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 037155 952 K--Q---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025 (1403)
Q Consensus 952 ~--~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1025 (1403)
. . ..+++.+|||+|++. .+..+||+||+.|+.... ..+.++..++++++++.++|.+..++.++ .|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 3 2 234678999999863 445799999999987543 23455666779999999999988887654 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999997 47788999999985 899
Q ss_pred EEecCCC
Q 037155 1105 IYAGPLG 1111 (1403)
Q Consensus 1105 ~~~g~~~ 1111 (1403)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999853
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=415.27 Aligned_cols=195 Identities=28% Similarity=0.377 Sum_probs=148.5
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc-C----C-----CCCc---eeEE------EEEEcCccCChh------
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YIEG------DIKISGYPKKQE------ 954 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g----~-----~~~~---~~~G------~i~i~g~~~~~~------ 954 (1403)
.|+|||++|++|+++||+|+||||||||+++|. | . ..+| .+.| .|.++|.++...
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999864 1 0 1122 2334 588888775210
Q ss_pred h----------------hcceeeEeecCCCCC----------------------C-------------------------
Q 037155 955 T----------------FARVSGYCEQTDIHS----------------------P------------------------- 971 (1403)
Q Consensus 955 ~----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 971 (1403)
+ ..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0 123468887743221 1
Q ss_pred -------CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 972 -------HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 972 -------~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
.+||.|++.|... ... ...+.++++.++|.. ..+..+ ..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 111 123568999999986 455543 479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1044 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.||++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 347899999994 46899988874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=365.67 Aligned_cols=200 Identities=24% Similarity=0.303 Sum_probs=173.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------hhc-ceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------TFA-RVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~-~~~gyv~Q~~~~ 969 (1403)
++.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... .++ +.+||++|++.+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 35799999999999999999999999999999999998764 489999999876421 122 569999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++.+||+||+.+....+. ...++.++.++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+||
T Consensus 94 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLD 165 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFAD 165 (224)
T ss_dssp CTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred CCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999998765432 2334445678999999999988887644 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|||+|||+.++..+++.|++++++|+|||++||+++ .+ +.||++++|++ |++++.|+
T Consensus 166 EPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999877999999999975 34 78999999985 89998885
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=372.15 Aligned_cols=213 Identities=27% Similarity=0.364 Sum_probs=181.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 6777776543 345699999999999999999999999999999999998763 4899999998763
Q ss_pred --h---hhhcceeeEeecCCCCCCCCCHHHHHHHHH-hhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 037155 953 --Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSA-WLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 953 --~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1026 (1403)
. ..+++.+|||+|++.+++.+||+||+.+.. ... ....++.++.++++++.++|.+..++.++ .||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCC
Confidence 1 234567999999999999999999999864 222 22334445678999999999988877644 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 56778999999985 79998
Q ss_pred ecCC
Q 037155 1107 AGPL 1110 (1403)
Q Consensus 1107 ~g~~ 1110 (1403)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=388.36 Aligned_cols=204 Identities=26% Similarity=0.432 Sum_probs=178.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC----Ch-hhhcceeeEeecCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----KQ-ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~~~~~ 970 (1403)
+++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+. .. ...++.+|||+|+..++
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 456799999999999999999999999999999999998764 489999999875 21 23457799999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|++||+||+.|+...+. ...++.+++++++++.++|.+..++.++ +|||||||||+|||||+.+|++|||||
T Consensus 93 p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp TTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999865432 2334556778999999999998888754 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||||||+..+..+++.|+++. +.|+|||++|||++ ++...||++++|++ |+++..|+..
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999888765 56999999999986 67889999999985 8999999853
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=372.78 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=181.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 5677776543 345799999999999999999999999999999999998763 4899999998764
Q ss_pred h----------------hhhcceeeEeecCCCCCCCCCHHHHHHHHH-hhhCCCCCcHHHHHHHHHHHHHHcCCCCc-cc
Q 037155 953 Q----------------ETFARVSGYCEQTDIHSPHVTLYESLLYSA-WLRLSSDVDTKKRKIFVDEVMELVELKPL-RD 1014 (1403)
Q Consensus 953 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~ 1014 (1403)
. ..+++.+|||+|++.+++.+||+||+.++. ..+ ....++.++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 124567999999999999999999999864 322 22334445678999999999887 77
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1015 ~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
+.++ .|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||+
T Consensus 149 ~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 7644 79999999999999999999999999999999999999999999999877999999999986 56778999
Q ss_pred EEEEecCcEEEEecCC
Q 037155 1095 LLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1095 i~ll~~gG~~~~~g~~ 1110 (1403)
+++|++ |++++.|+.
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 899988874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=383.88 Aligned_cols=207 Identities=26% Similarity=0.334 Sum_probs=180.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---------------------~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---------------------TEGSVLVDGQELTTLSES 98 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECSSCCHH
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHH
Confidence 45799999999999999999999999999999999999865 58999999998876542
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+|||+|++.+++.+||+||+.|+.+..+... . +...++
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v 144 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRV 144 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHH
Confidence 4679999999999999999999999765433210 0 011245
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ |||||||||+|||||+.+|++|||||||||||+.++.+|.+.|+++.+..|.|+|+
T Consensus 145 ~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 145 TELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHHTCGGGTTCCTTT-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 6789999999999888876 99999999999999999999999999999999999999999999998777888888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|. ..++.++||+|++|++|++++.|+++++.
T Consensus 220 vTHd-l~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 220 ITHE-MDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp EESC-HHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred EecC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7664 45788899999999999999999999874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=368.32 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=181.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 16 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 16 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5677776543 345799999999999999999999999999999999998663 4899999998764
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 037155 953 Q--ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 953 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1030 (1403)
. ...++.+||++|++.+++.+||+||+.+...... ...++..+.++++++.++|.+..++.++ .||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~ 152 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 152 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 2 2345679999999999999999999998765432 2233344568899999999988887644 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999999999999999877999999999986 46677999999985 789988874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=381.36 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=184.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 466777654320 345699999999999999999999999999999999998764 489999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 037155 952 KQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 952 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1030 (1403)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.++ +||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 43 234577999999999999999999999987654 23345556779999999999998887654 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999754 999999999986 67789999999985 89999887
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=371.13 Aligned_cols=216 Identities=25% Similarity=0.304 Sum_probs=181.3
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 8 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 8 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 6677776543 345699999999999999999999999999999999998764 4899999998764
Q ss_pred h----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhh-hCCC---------CCcHHHHHHHHHHHHHHcCCCCccccccc
Q 037155 953 Q----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWL-RLSS---------DVDTKKRKIFVDEVMELVELKPLRDALVG 1018 (1403)
Q Consensus 953 ~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 1018 (1403)
. ...++.+||++|++.+++.+||+||+.+.... +... .....+..+.++++++.++|.+..++.++
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 3 12345799999999888999999999986533 1110 01223344568899999999988887654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1019 ~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
.|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|
T Consensus 153 -----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (257)
T 1g6h_A 153 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 226 (257)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999877999999999987 467789999999
Q ss_pred ecCcEEEEecCC
Q 037155 1099 KRGGRVIYAGPL 1110 (1403)
Q Consensus 1099 ~~gG~~~~~g~~ 1110 (1403)
++ |++++.|+.
T Consensus 227 ~~-G~i~~~g~~ 237 (257)
T 1g6h_A 227 FN-GQIIAEGRG 237 (257)
T ss_dssp ET-TEEEEEEES
T ss_pred EC-CEEEEEeCH
Confidence 85 789988875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=413.85 Aligned_cols=106 Identities=27% Similarity=0.372 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 037155 998 IFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073 (1403)
Q Consensus 998 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~---P~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1073 (1403)
+.+.++++.++|... .++. +..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|+++++.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357899999999863 3444 347999999999999999996 7999999999999999999999999999988
Q ss_pred CCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1074 GRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1074 g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
|.|||+++|+++ .+ +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999975 34 7899999994 46899998874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=380.91 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=178.3
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+|||+|+..++|++|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHhHCcEEEEecCcccCCCCC
Confidence 346799999999999999999999999999999999998764 489999999876432 23567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+. .+.++.+++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 92 VYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9999999865542 2345556778999999999998887644 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999754 999999999986 67889999999985 899998875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=380.23 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccC----CCC
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL----NEF 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~----~~~ 259 (1403)
+++|+|||+.|++||+++|+|||||||||||++|+|+++| .+|+|.++|+++ ...
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---------------------~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP---------------------DSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEEEESSSCBC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC---------------------CCcEEEECCEECccccccc
Confidence 5699999999999999999999999999999999999865 589999999987 222
Q ss_pred Cc-cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 VP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 ~~-~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.+ ++.+|||+|++.++|.+||+||+.|+.+.++... .+ ...+++.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~--------------------~~--------------~~~~v~~ 121 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT--------------------AQ--------------ERQRIEA 121 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCS--------------------HH--------------HHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCh--------------------HH--------------HHHHHHH
Confidence 22 4789999999999999999999999865433211 00 1124567
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..|..+++ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..|.|+|++.
T Consensus 122 ~l~~~gL~~~~~r~~~~-----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vT 196 (359)
T 3fvq_A 122 MLELTGISELAGRYPHE-----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196 (359)
T ss_dssp HHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 89999999999988876 9999999999999999999999999999999999999999988888776788888766
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
| ...++..++|+|++|++|+++..|+++++.
T Consensus 197 H-d~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 197 H-DREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp C-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred C-CHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 5 555889999999999999999999999874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=381.24 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=177.1
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+|||+|+..++|++|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 346799999999999999999999999999999999998764 489999999886432 23567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+ ..+.++.+++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999975433 23334445678999999999998887654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999998754 999999999986 57789999999985 899998875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=368.82 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=181.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++.+|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 36777777654 346799999999999999999999999999999999997653 379999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
.. ...++.+||++|++.+++.+||+||+.++..... ..+.++.++++++.++|.+..++.++ .||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 43 3345679999999988889999999998764331 12234558899999999988887654 79999
Q ss_pred HHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1029 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1029 qrqRl~IA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57788999999985
Q ss_pred cEEEEecCCC
Q 037155 1102 GRVIYAGPLG 1111 (1403)
Q Consensus 1102 G~~~~~g~~~ 1111 (1403)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 8999999864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=381.26 Aligned_cols=206 Identities=25% Similarity=0.364 Sum_probs=180.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
.++|+|||+.+++||+++|+|||||||||||++|+|+++| .+|+|.++|+++....+ +
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---------------------~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---------------------TSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTCCGGG
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC---------------------CCeEEEECCEECCCCCHHH
Confidence 5699999999999999999999999999999999999865 58999999998876544 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.++|.+||+||+.|+.+.++.. +. +...+++.+++.
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~ 120 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAK----------KE------------------------VINQRVNQVAEV 120 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCC----------HH------------------------HHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHH
Confidence 77999999999999999999999986543321 00 012245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+.+ |||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..|.|+|++.| ..
T Consensus 121 ~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~ 194 (381)
T 3rlf_A 121 LQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQ 194 (381)
T ss_dssp TTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CH
T ss_pred cCCchhhcCChhH-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CH
Confidence 9999999988876 99999999999999999999999999999999999999999999998766888887654 55
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 195 VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 6899999999999999999999999874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=381.47 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=177.9
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTDI 968 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~ 968 (1403)
+++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 346799999999999999999999999999999999998764 48999999987532 123567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
++|++||+||+.|+...+. .+.++.+++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|||
T Consensus 92 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999876542 3345556778999999999998887644 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 224 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999999999754 999999999986 67789999999985 899998875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=363.21 Aligned_cols=212 Identities=22% Similarity=0.346 Sum_probs=177.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 7 LEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 5677776543 335699999999999999999999999999999999998663 4899999998764
Q ss_pred hh---h-hcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCH
Q 037155 953 QE---T-FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE-LKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 953 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 1027 (1403)
.. . .++.+||++|++.+++.+||+||+.+...... ..++..+.++++++.++ |.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSg 142 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSG 142 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCH
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCH
Confidence 31 1 23459999999999999999999998642111 11233455788999995 887777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~ 220 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999976 57789999999985 789888
Q ss_pred cCC
Q 037155 1108 GPL 1110 (1403)
Q Consensus 1108 g~~ 1110 (1403)
|+.
T Consensus 221 g~~ 223 (240)
T 1ji0_A 221 GKA 223 (240)
T ss_dssp EEH
T ss_pred cCH
Confidence 864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=365.28 Aligned_cols=207 Identities=26% Similarity=0.358 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
.++|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++...
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---------------------SSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCCSHHHH
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---------------------CCeEEEECCEECCcccccH
Confidence 3599999999999999999999999999999999999865 589999999987421
Q ss_pred -CccceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 -VPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..++.+|||+|++ ..+..+||+||+.|+....+... . + ...+++
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~ 125 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE----------D----------E--------------IRKRVD 125 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCH----------H----------H--------------HHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHH
Confidence 1246799999986 34447899999999755432110 0 0 112356
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..|.|+|++
T Consensus 126 ~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v 200 (275)
T 3gfo_A 126 NALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA 200 (275)
T ss_dssp HHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHcCCchhhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 789999999999988876 999999999999999999999999999999999999999999999973348888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.|... ++.+++|+|++|++|++++.|+++++..
T Consensus 201 tHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 201 THDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp ESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred ecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 76554 7888999999999999999999998753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=381.08 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=176.1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~~l 973 (1403)
+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..++|++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 99999999999999999999999999999999998764 48999999987532 23467799999999999999
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+||+.|+...+ ..+.++.+++++++++.++|.+..++.++ +|||||||||+|||||+.+|++||||||||
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq~QRvalAraL~~~P~lLLLDEP~s 169 (353)
T 1oxx_K 98 TAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFS 169 (353)
T ss_dssp CHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 9999999976443 23345556779999999999998887654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+.++..+++.|+++.++ |+|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 170 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999754 999999999986 67889999999985 8999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=358.34 Aligned_cols=207 Identities=21% Similarity=0.255 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|||+++++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---------------------TEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHHH
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CceEEEECCEEcccCCHHH
Confidence 5699999999999999999999999999999999999865 58999999998876543
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+|||+|++.+++.+||+||+.++......+. ..+. + ....+
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~-------~~~~----------~--------------~~~~~ 125 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA-------MSGE----------E--------------RRKRA 125 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSC-------CCHH----------H--------------HHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccC-------CCHH----------H--------------HHHHH
Confidence 2359999999999999999999998654321000 0000 0 01234
Q ss_pred HHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 337 DYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 337 ~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
..+++.+||.+. .+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi 200 (235)
T 3tif_A 126 LECLKMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200 (235)
T ss_dssp HHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHCCCChhhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 567899999875 4777765 9999999999999999999999999999999999999999999999776688999
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
++.|.+. ..+++|+|++|++|+++..|+.+++
T Consensus 201 ~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 201 VVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred EEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 8887664 4589999999999999999988765
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=380.54 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=177.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 5677776543 345799999999999999999999999999999999998764 4899999998764
Q ss_pred hh-hhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 953 QE-TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 953 ~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2334555677999999999999888764 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999755 999999999986 67789999999985 899998875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=374.48 Aligned_cols=206 Identities=26% Similarity=0.414 Sum_probs=178.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---------------------TKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTCCGGG
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CccEEEECCEECCcCChhh
Confidence 4699999999999999999999999999999999999865 58999999998865433 5
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|+..++|.+||+||+.|+.+.++.. +.+ ...+++.+++.
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~----------~~~------------------------~~~~v~~~l~~ 132 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVP----------KDE------------------------MDARVRELLRF 132 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC----------HHH------------------------HHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 78999999999999999999999975433211 000 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.| ..
T Consensus 133 ~gL~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~ 206 (355)
T 1z47_A 133 MRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH-DQ 206 (355)
T ss_dssp TTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS-CH
T ss_pred cCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CH
Confidence 9999999988876 99999999999999999999999999999999999999999999997766888887765 45
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 207 ~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 207 EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5888999999999999999999999874
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=360.81 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=174.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP---------------------SHGECHLLGQNLNSWQPKA 82 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC---------------------SSCEEEETTEETTTSCHHH
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCcEEEECCEECCcCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++.+++.+||+||+.|+...... .+ ....++.++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------------------~~--------------~~~~~~~~l 126 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG----------------------SQ--------------DRQALQQVM 126 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS----------------------TT--------------HHHHHHHHH
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCc----------------------HH--------------HHHHHHHHH
Confidence 35699999999888889999999987542210 00 112356688
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+.+||.+..+..+++ |||||||||+|||||+. +|++|+|||||+|||+.++.++.+.|+++.+..+.|+
T Consensus 127 ~~~~l~~~~~~~~~~-----LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tv 201 (266)
T 4g1u_C 127 AQTDCLALAQRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201 (266)
T ss_dssp HHTTCSTTTTSBGGG-----CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEE
T ss_pred HHcCChhHhcCCccc-----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999988888865 99999999999999999 9999999999999999999999999999987655677
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.| ...++..+||+|++|++|++++.|+++++.
T Consensus 202 i~vtH-dl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 202 CCVLH-DLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEEc-CHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 77654 555788899999999999999999998874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=375.37 Aligned_cols=199 Identities=22% Similarity=0.298 Sum_probs=174.5
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+++ +|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..++|++|
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 88 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSC
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCC
Confidence 345 99999999999999999999999999999999998764 48999999987643 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+... .. ++++++++.++|.+..++.++ +|||||||||+|||||+.+|++|+|||||||
T Consensus 89 v~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 89 VKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp HHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred HHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999999987654321 11 458899999999998887754 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++.+ .|+|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999975 4999999999986 67889999999985 789988875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=373.93 Aligned_cols=206 Identities=29% Similarity=0.382 Sum_probs=179.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---------------------TSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGGG
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---------------------CccEEEECCEECCCCChhh
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.+++++||+||+.|+.+.++.. +.+ ...+++.+++.
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~ 120 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRIS----------KDE------------------------VEKRVVEIARK 120 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH----------HHH------------------------TTHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 67999999999999999999999986543211 000 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 121 ~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~ 194 (359)
T 2yyz_A 121 LLIDNLLDRKPTQ-----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-Q 194 (359)
T ss_dssp TTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-H
T ss_pred cCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-H
Confidence 9999999988876 999999999999999999999999999999999999999999999977668888887654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 195 AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5788999999999999999999999874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=367.94 Aligned_cols=208 Identities=27% Similarity=0.381 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|||+.|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++.....
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---------------------SSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---------------------SEEEEEETTEETTSBCHHH
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---------------------CCcEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999865 58999999999876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+ .||+|||.|+..... .++..+++...+. .+. +
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~l-----~~~-i 173 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRVTAG-------------------------NDEVEAAAQAAGI-----HDA-I 173 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTSTTCC-------------------------HHHHHHHHHHHTC-----HHH-H
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhcccCC-------------------------HHHHHHHHHHhCc-----HHH-H
Confidence 467999999998885 599999998642111 0111111111110 111 1
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .+++..+|.+|+ .+..|||||||||+|||||+.+|+||+|||||||||+.++..|.+.|+++.+ ++|+|++.|.
T Consensus 174 ~--~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~ 248 (306)
T 3nh6_A 174 M--AFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHR 248 (306)
T ss_dssp H--HSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCS
T ss_pred H--hccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcC
Confidence 1 266778899984 5677999999999999999999999999999999999999999999998864 6788887665
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.. .+ ..+|+|++|++|+|++.|+++++.+
T Consensus 249 l~-~~-~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 249 LS-TV-VNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HH-HH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 43 44 4599999999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=359.21 Aligned_cols=218 Identities=25% Similarity=0.282 Sum_probs=171.8
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 5666766543 335799999999999999999999999999999999997211245899999998764
Q ss_pred h---hhh-cceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC-CCcccccccCCCCCC-CC
Q 037155 953 Q---ETF-ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-KPLRDALVGLPGVNG-LS 1026 (1403)
Q Consensus 953 ~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-LS 1026 (1403)
. ... ++.++|++|++.+++.+||+|++.+.............+..+.++++++.++| .+..++.++ . ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 3 112 34589999999999999999999886532111111223344568899999999 577777643 6 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGRVI 1105 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~gG~~~ 1105 (1403)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999986 35555 599999985 7999
Q ss_pred EecCC
Q 037155 1106 YAGPL 1110 (1403)
Q Consensus 1106 ~~g~~ 1110 (1403)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 88875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.80 Aligned_cols=220 Identities=22% Similarity=0.374 Sum_probs=178.5
Q ss_pred CcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 870 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
...+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 19 ~~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~ 83 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGK 83 (279)
T ss_dssp CEEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTB
T ss_pred CceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 3357788877654 335699999999999999999999999999999999998764 4799999998
Q ss_pred cCC-----hhhhcceeeEeecCCCCC--CCCCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 037155 950 PKK-----QETFARVSGYCEQTDIHS--PHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPG 1021 (1403)
Q Consensus 950 ~~~-----~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1021 (1403)
+.. ....++.+||++|++.+. +.+||+||+.++...... .....++..+.++++++.++|.+..++.++
T Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 160 (279)
T 2ihy_A 84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--- 160 (279)
T ss_dssp CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh---
Confidence 764 233456799999987543 457999999885321100 011122334568899999999888877654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCeEEEEe
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
.|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.||++++|+
T Consensus 161 --~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 161 --YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK 237 (279)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE
Confidence 799999999999999999999999999999999999999999999997669999 99999986 4667899999998
Q ss_pred cCcEEEEecCCC
Q 037155 1100 RGGRVIYAGPLG 1111 (1403)
Q Consensus 1100 ~gG~~~~~g~~~ 1111 (1403)
+ |++++.|+..
T Consensus 238 ~-G~i~~~g~~~ 248 (279)
T 2ihy_A 238 D-GQSIQQGAVE 248 (279)
T ss_dssp T-TEEEEEEEHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999888753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=373.90 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---------------------TSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGGG
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHhH
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.++|++||+||+.|+.+.++.. +. + ...+++.+++.
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~----------~--------------~~~~v~~~l~~ 120 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAP----------RE----------E--------------IDKKVREVAKM 120 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC----------HH----------H--------------HHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 67999999999999999999999975433211 00 0 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 121 ~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~ 194 (362)
T 2it1_A 121 LHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-Q 194 (362)
T ss_dssp TTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-H
T ss_pred cCCchHhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-H
Confidence 9999998888865 999999999999999999999999999999999999999999999977668888887654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 195 AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5888999999999999999999998874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=357.39 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC--CCC-
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN--EFV- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~--~~~- 260 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++. ...
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---------------------DEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEESSSTTCCH
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---------------------CCcEEEECCEECCCccccH
Confidence 4699999999999999999999999999999999999865 5899999998874 111
Q ss_pred --ccceEEEeccCCCCCCCCCHHHHHHhhc-ccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 --PQRTCAYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~~~~lTVrE~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++||+|++.+++.+||+||+.|+. +..+.. +. + ....++
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~ 141 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----------RE----------K--------------AEAKAM 141 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCC----------HH----------H--------------HHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHH
Confidence 1356999999999999999999999853 222110 00 0 012346
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+. +.|+|++
T Consensus 142 ~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~v 215 (263)
T 2olj_A 142 ELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVV 215 (263)
T ss_dssp HHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 688999999988888866 9999999999999999999999999999999999999999999999765 7888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|. ..++.+++|+|++|++|++++.|+++++.
T Consensus 216 tHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 216 THE-MGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp CSC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCC-HHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 654 45777899999999999999999998874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=351.18 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP---------------------TEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC---------------------SEEEEEETTEECCSSCHHH
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998765432
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.|+....+.. +. + ....+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~ 121 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKP----------KK----------E--------------AKERG 121 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------HH----------H--------------HHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCC----------HH----------H--------------HHHHH
Confidence 256999999999999999999999864332110 00 0 01234
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|+
T Consensus 122 ~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~ 195 (224)
T 2pcj_A 122 EYLLSELGLGDKLSRKPYE-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVM 195 (224)
T ss_dssp HHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 6688999999988888876 9999999999999999999999999999999999999999999999765 889888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecCh
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPR 446 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~ 446 (1403)
+.|+.. ++ +++|+|++|++|++++.|++
T Consensus 196 vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 196 VTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp ECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred EcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 877643 44 89999999999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=355.00 Aligned_cols=196 Identities=24% Similarity=0.383 Sum_probs=169.4
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+|+|||+++++ |++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 59999999999 99999999999999999999998764 48999999987643 2235679999999999999999999
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+.+....+ . ....++.++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99864322 1 11224568899999999988887654 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1059 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999976 57788999999985 799988874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=359.27 Aligned_cols=200 Identities=25% Similarity=0.384 Sum_probs=170.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCC-CCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD-IHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lTv~ 976 (1403)
+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+......++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 5699999999999999999999999999999999998663 4899999998875434567799999985 466789999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC--CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK--PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
||+.+......+ .++.++.++++++.+||. +..++.+ ..|||||||||+|||||+.+|+||+|||||+|
T Consensus 98 enl~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYP----DRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCT----TSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 999986432211 111234578999999998 7777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999987 46678999999985 789888864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=373.45 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++| .+|+|.++|+++....+ +
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---------------------TEGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGGG
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---------------------CceEEEECCEECCCCChhh
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|+..+++++||+||+.|+.+.++.. +.+ ...+++.+++.
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~ 128 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFP----------KDE------------------------IDKRVRWAAEL 128 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCC----------HHH------------------------HHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 77999999999999999999999976543211 000 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 129 ~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~ 202 (372)
T 1v43_A 129 LQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-Q 202 (372)
T ss_dssp TTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-H
T ss_pred cCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-H
Confidence 9999999888865 999999999999999999999999999999999999999999999977668888887654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 203 ~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 203 VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5888999999999999999999999874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=371.71 Aligned_cols=201 Identities=25% Similarity=0.362 Sum_probs=176.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~~ 264 (1403)
+|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ ++.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---------------------DSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---------------------CCcEEEECCEECCCCchhhCc
Confidence 99999999999999999999999999999999999865 58999999998865433 467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
+|||+|++.+++.+||+||+.|+.+.++.. . + .+++.+++.+|
T Consensus 74 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~--------------------~-~----------------~~v~~~l~~~~ 116 (348)
T 3d31_A 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIK--------------------D-P----------------KRVLDTARDLK 116 (348)
T ss_dssp CEEECTTCCCCTTSCHHHHHHHHHHHHCCC--------------------C-H----------------HHHHHHHHHTT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCC--------------------H-H----------------HHHHHHHHHcC
Confidence 999999999999999999999974432110 0 0 13466889999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|. ..+
T Consensus 117 L~~~~~~~~~~-----LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~ 190 (348)
T 3d31_A 117 IEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTE 190 (348)
T ss_dssp CTTTTTSCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHH
T ss_pred CchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHH
Confidence 99999988876 999999999999999999999999999999999999999999999977668888887654 458
Q ss_pred HHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 425 TYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+..++|+|++|++|+++..|+++++.
T Consensus 191 ~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 191 ARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 88999999999999999999999874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=373.46 Aligned_cols=206 Identities=29% Similarity=0.388 Sum_probs=177.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----- 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----- 258 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++| .+|+|.++|+++..
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---------------------SRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEEEEEGGGTE
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---------------------CccEEEECCEECccccccc
Confidence 4699999999999999999999999999999999999865 58999999987654
Q ss_pred -CCc-cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 259 -FVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 259 -~~~-~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..+ ++.+|||+|+..++|++||+||+.|+.+.++.. +.+ ...++
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~------------------------~~~~v 120 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVP----------RQE------------------------IDQRV 120 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCC----------HHH------------------------HHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----------HHH------------------------HHHHH
Confidence 322 477999999999999999999999975443211 000 11245
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+|+
T Consensus 121 ~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 121 REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHCCCchHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999988876 99999999999999999999999999999999999999999999997766888888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|. ..++..++|+|++|++|+++..|+++++.
T Consensus 196 vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 196 VTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EESC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ECCC-HHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 7654 45888999999999999999999998874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=359.35 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----- 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----- 258 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++..
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---------------------SEGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCEEECTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEcccccccc
Confidence 4699999999999999999999999999999999999865 58999999988751
Q ss_pred -----CC------ccceEEEeccCCCCCCCCCHHHHHHhhc-ccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHH
Q 037155 259 -----FV------PQRTCAYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVA 326 (1403)
Q Consensus 259 -----~~------~~~~~~yv~Q~d~~~~~lTVrE~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~ 326 (1403)
.. .++.++||+|++.+++.+||+||+.|+. +..+.. +. +
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~----------~--------- 128 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KH----------D--------- 128 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HH----------H---------
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HH----------H---------
Confidence 11 2357999999999999999999999853 221110 00 0
Q ss_pred hhccchhHHHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 327 VAGQETSLVTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 327 ~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
....++.+++.+||++. .+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 129 -----~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 129 -----ARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp -----HHHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 01235668899999988 8888876 999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 406 MVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 406 l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.+. |.|+|++.|. ..++..++|+|++|++|++++.|+++++.
T Consensus 199 l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 199 LAEE-GKTMVVVTHE-MGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHT-TCCEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhC-CCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9764 7888887655 45777899999999999999999998874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=372.30 Aligned_cols=204 Identities=22% Similarity=0.320 Sum_probs=176.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----CC
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE-----FV 260 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~-----~~ 260 (1403)
+|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.. ..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---------------------STGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---------------------SEEEEEETTEEEEETTEESSC
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CceEEEECCEECcccccccCC
Confidence 99999999999999999999999999999999999865 58999999987644 22
Q ss_pred -ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 -PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.+|||+|++.+++.+||+||+.|+.+.++... .+ ...+++.+
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~ 124 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK----------EE------------------------IRKRVEEV 124 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCH----------HH------------------------HHHHHHHH
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHH
Confidence 35789999999999999999999999765432110 00 11235678
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|
T Consensus 125 l~~~~L~~~~~~~~~~-----LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 199 (353)
T 1oxx_K 125 AKILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp HHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred HHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9999999999988876 99999999999999999999999999999999999999999999997766888888765
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
. ..++..++|+|++|++|+++..|+++++.
T Consensus 200 d-~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 200 D-PADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp C-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred C-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 45888999999999999999999998874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=354.78 Aligned_cols=220 Identities=25% Similarity=0.300 Sum_probs=177.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 37788877654 23579999999999999999999999999999999999732224589999999875
Q ss_pred Ch---hhh-cceeeEeecCCCCCCCCCHHHHHHHHHh-hh---CCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 037155 952 KQ---ETF-ARVSGYCEQTDIHSPHVTLYESLLYSAW-LR---LSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGV 1022 (1403)
Q Consensus 952 ~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1022 (1403)
.. ... ++.+||++|++.+++.+||.|++.+... .+ .......++..+.++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 2348999999999999999999987542 21 111223334456788999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRG 1101 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~g 1101 (1403)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 149999999999999999999999999999999999999999999999767999999999986 34444 899999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 241 G~i~~~g~~ 249 (267)
T 2zu0_C 241 GRIVKSGDF 249 (267)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEcCH
Confidence 799998886
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=356.53 Aligned_cols=213 Identities=24% Similarity=0.351 Sum_probs=173.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---------------------DEGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHHH
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998765432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhccc--ccccchhhHHHHhhHHHHhcCC-CCCchHHHHHHHHHhhccchhHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRC--LGVGTRYELLAELSRREKQQGI-KPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~--~~~~~~~~~~~~~~~~e~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.|+... .+. +. .+-+ ... .+..+ ....+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~---~~---~~~~----~~~~~~~~~--------------~~~~~ 134 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP---LN---SLFY----KKWIPKEEE--------------MVEKA 134 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH---HH---HHHH----CSSCCCCHH--------------HHHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCc---cc---cccc----ccccCCHHH--------------HHHHH
Confidence 35699999999999999999999986432 110 00 0000 000 00000 01235
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|+
T Consensus 135 ~~~l~~~~l~~~~~~~~~~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~ 208 (257)
T 1g6h_A 135 FKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLI 208 (257)
T ss_dssp HHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHcCCchhhCCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 6688999999988888876 9999999999999999999999999999999999999999999999764 788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhh
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDN 448 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~ 448 (1403)
+.|+. .++.+++|+|++|++|++++.|++++
T Consensus 209 vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 209 IEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred EecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 77665 47788999999999999999999888
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=353.39 Aligned_cols=206 Identities=25% Similarity=0.320 Sum_probs=174.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.... .
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---------------------SSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEETTTCHHHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCccHHHH
Confidence 4699999999999999999999999999999999999865 5899999998875421 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++||+|++.+++.+||+||+.|..+..+.. +. + ....++.+++
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~ 132 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS----------SS----------E--------------IEEMVERATE 132 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC----------HH----------H--------------HHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC----------hH----------H--------------HHHHHHHHHH
Confidence 467999999999999999999999864322110 00 0 0113466789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|.+
T Consensus 133 ~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~ 206 (256)
T 1vpl_A 133 IAGLGEKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM 206 (256)
T ss_dssp HHCCGGGGGSBGGG-----CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH
T ss_pred HCCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH
Confidence 99999988888866 999999999999999999999999999999999999999999999875 478888877654
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.++..++|+|++|++|++++.|+++++.+
T Consensus 207 -~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 207 -LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp -HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred -HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 46778899999999999999999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=350.06 Aligned_cols=204 Identities=23% Similarity=0.357 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---------------------QKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHHH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998865432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.|+.... . ...+. ....+.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~--------------------~~~~~--------------~~~~~~~ 122 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR-K--------------------DKEGI--------------KRDLEWI 122 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-C--------------------CSSHH--------------HHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-C--------------------CHHHH--------------HHHHHHH
Confidence 245999999999999999999999863110 0 00000 1124557
Q ss_pred HHHcC-CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLG-LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lg-L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.++ |++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.
T Consensus 123 l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vt 196 (240)
T 1ji0_A 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVE 196 (240)
T ss_dssp HHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred HHHcccHhhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 88884 88877777765 999999999999999999999999999999999999999999999876 578888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++ .++.+++|+|++|++|++++.|+++++.
T Consensus 197 Hd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 197 QNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp SCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 654 4778899999999999999999988764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=349.30 Aligned_cols=194 Identities=24% Similarity=0.341 Sum_probs=164.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|. .++.+||++|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 35699999999999999999999999999999999998663 479987 235699999999988999999
Q ss_pred HHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 977 ESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 977 e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
||+.+....... .........+.++++++.++|.+..++.++ .|||||||||+|||||+.+|+||||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999987532211 001122334568899999999988877644 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |+ ++.|+.
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999876 999999999986 46788999999985 67 787764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=349.87 Aligned_cols=194 Identities=22% Similarity=0.361 Sum_probs=168.7
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+|+|||+++++||+++|+||||||||||+++|+|..++ . |+|.++|.+... ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 389999999999999999999999999999999998763 5 999999987532 3345679999999998899999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------EEEE
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS-------IIFM 1048 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~-------illL 1048 (1403)
+||+.+.... ... ++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 9999875211 111 345789999999998887764 4799999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999877999999999986 46688999999985 789888875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=349.81 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=172.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~ 264 (1403)
+|+|+|+.+++ |+++|+|||||||||||++|+|.++| .+|+|.++|+++.... .++.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---------------------DRGEVRLNGADITPLPPERRG 71 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCTTTSC
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCchhhCc
Confidence 49999999999 99999999999999999999999865 5899999998875432 2467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++||+|++.+++.+||+||+.|+.+..+. ... ...++.+++.+|
T Consensus 72 i~~v~q~~~l~~~ltv~enl~~~~~~~~~----------~~~--------------------------~~~~~~~l~~~~ 115 (240)
T 2onk_A 72 IGFVPQDYALFPHLSVYRNIAYGLRNVER----------VER--------------------------DRRVREMAEKLG 115 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTTCTTSCH----------HHH--------------------------HHHHHHHHHTTT
T ss_pred EEEEcCCCccCCCCcHHHHHHHHHHHcCC----------chH--------------------------HHHHHHHHHHcC
Confidence 99999999999999999999987443210 000 113456789999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+ ..+
T Consensus 116 l~~~~~~~~~~-----LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~ 189 (240)
T 2onk_A 116 IAHLLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIE 189 (240)
T ss_dssp CTTTTTCCGGG-----SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHH
T ss_pred CHHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHH
Confidence 99888888876 999999999999999999999999999999999999999999999876557888887665 447
Q ss_pred HHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 425 TYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+..++|+|++|++|++++.|+++++.
T Consensus 190 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 190 AAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 78899999999999999999998874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=358.58 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=173.0
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..+.++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 3578899887652 235699999999999999999999999999999999998764 48999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1020 (1403)
+.. ..+++.+|||+|++.+++ .||+||+.|+... ... +.++++++.+++.+.. ++.++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 643 346678999999998875 5999999986421 111 2356666766665432 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
...|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|||+++|+++. + ..||++++|++
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~ 263 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKD 263 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEET
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999864 7999999999863 4 45999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 264 -G~iv~~G~~ 272 (306)
T 3nh6_A 264 -GCIVERGRH 272 (306)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999984
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=347.49 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=171.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 467777776531 0235699999999999999999999999999999999998663 489999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCccccc-------ccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL-------VGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~ 1021 (1403)
.. ..+++.+||++|++.+++ .||+||+.+... ... .+.++++++.+++.+..+.. ++. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 334567999999998876 699999987521 111 12367788888887655443 222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999995 59999999999863 4 46999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 789988874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=354.82 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=170.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+.. .+++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 17 l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 17 VKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG
T ss_pred EEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 678888765420 0125699999999999999999999999999999999998763 4899999998764
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcH---HHHHHHHHHHHHHc--CCCCcccccccCCCCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDT---KKRKIFVDEVMELV--ELKPLRDALVGLPGVNG 1024 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~---~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~ 1024 (1403)
. ..+++.+|||+|++.+++ .||+||+.+..... ..... ......++++++.+ |+....+..+ ..
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~ 156 (271)
T 2ixe_A 85 QYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----NQ 156 (271)
T ss_dssp GBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----TT
T ss_pred cCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----CC
Confidence 2 234567999999998877 59999998863211 11000 11122346677777 6766666553 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.||++++|++ |+
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~ 233 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GS 233 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999864 4899999999975 3346999999985 78
Q ss_pred EEEecCC
Q 037155 1104 VIYAGPL 1110 (1403)
Q Consensus 1104 ~~~~g~~ 1110 (1403)
+++.|+.
T Consensus 234 i~~~g~~ 240 (271)
T 2ixe_A 234 VCEQGTH 240 (271)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9988874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=344.31 Aligned_cols=197 Identities=19% Similarity=0.281 Sum_probs=166.3
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
-++++|+++.+ ++ .+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 35677776543 34 699999999999999999999999999999999998663 489999999876
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
. ..++.+||++|++.+++.+||+||+.+....+.. ... .+.++++++.++|.+. +..+ ..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 5 3567799999999999999999999987654321 111 2447889999999877 6553 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999999766899999999987 466677777765
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=348.86 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---------------------TSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCHHHHGG
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CCcEEEECCEECchHHhhh
Confidence 4699999999999999999999999999999999999865 5899999998775322356
Q ss_pred eEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++||+|++ ..++.+||+||+.|+.... .. ..+ ....++.+++.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~ 123 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YP--------------------DRD--------------PVPLVKKAMEF 123 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CT--------------------TSC--------------SHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CC--------------------HHH--------------HHHHHHHHHHH
Confidence 799999995 5667899999999864321 00 000 01234667899
Q ss_pred cCCc--ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 343 LGLD--ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 343 lgL~--~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+||+ +..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.|+|++.|.
T Consensus 124 ~gl~~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd 197 (266)
T 2yz2_A 124 VGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHD 197 (266)
T ss_dssp TTCCHHHHTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred cCcCCcccccCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 9998 888888865 9999999999999999999999999999999999999999999998765 7888887766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ++..++|+|++|++|++++.|+++++.+
T Consensus 198 ~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 198 IE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 54 6778899999999999999999988754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=339.32 Aligned_cols=200 Identities=25% Similarity=0.412 Sum_probs=161.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~i~g~~~~~~~~~~ 80 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---------------------ENGQVLIDGHDLALADPNW 80 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEETTTSCHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998865432
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+||+.|+... . . .+ .++.++
T Consensus 81 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~--------------------~---~~---------------~~~~~l 119 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLN-RSIIDNISLANPG--M--------------------S---VE---------------KVIYAA 119 (247)
T ss_dssp HHHHEEEECSSCCCTT-SBHHHHHTTTCTT--C--------------------C---HH---------------HHHHHH
T ss_pred HHhcEEEEeCCCcccc-ccHHHHHhccCCC--C--------------------C---HH---------------HHHHHH
Confidence 457999999998886 5999999885210 0 0 00 011223
Q ss_pred HHcCCcc-------cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 341 KLLGLDI-------CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 341 ~~lgL~~-------~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
+.+||.+ ..++.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|
T Consensus 120 ~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~t 196 (247)
T 2ff7_A 120 KLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRT 196 (247)
T ss_dssp HHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSE
T ss_pred HHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCE
Confidence 3344433 2344444 2345699999999999999999999999999999999999999999999984 3789
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+|++.|.+. .+ ..+|+|++|++|++++.|+++++.
T Consensus 197 viivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 197 VIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 988877654 34 569999999999999999998874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=345.66 Aligned_cols=209 Identities=22% Similarity=0.371 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---------------------TGGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEGGGBCHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999865 58999999988754332
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+|||.|+..... . .+ +.. ++.. ....+.++
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~--~-~~------------------~~~---~~~~------~~~~~~~l 139 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP--T-ME------------------EIT---AVAM------ESGAHDFI 139 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC--C-HH------------------HHH---HHHH------HHTCHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccCC--h-HH------------------HHH---HHHH------HHhHHHHH
Confidence 357999999998887 599999998642110 0 00 000 0000 01124456
Q ss_pred HHc--CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 341 KLL--GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 341 ~~l--gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+.+ ||+...+..++ .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|++.
T Consensus 140 ~~l~~gl~~~~~~~~~-----~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 140 SGFPQGYDTEVGETGN-----QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp HHSTTGGGSBCCGGGT-----TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred HhhhcchhhhhcCCcC-----CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 777 67666666554 49999999999999999999999999999999999999999999988654578888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|.+. ++ ..+|+|++|++|++++.|+++++.+
T Consensus 215 Hd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 215 QQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp SCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 6643 44 4599999999999999999988753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=344.78 Aligned_cols=198 Identities=27% Similarity=0.418 Sum_probs=164.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.+||++|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 35699999999999999999999999999999999998653 47999999987643 234567999999998877 5
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccc-------cCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV-------GLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-------g~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
||+||+.+... .... ++.++++++.+++.+..+... +. .+..|||||||||+|||||+.+|++|
T Consensus 91 tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 91 TIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp EHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 1112 123678899999987765432 22 24579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|++ |++++.|+.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999997 5999999999975 34 56999999985 788888764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=347.07 Aligned_cols=208 Identities=26% Similarity=0.341 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC--CCC-
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN--EFV- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~--~~~- 260 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++. ...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---------------------TSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTBCCC---CCH
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CCeEEEECCEEcccccCCH
Confidence 4699999999999999999999999999999999999865 5899999998875 322
Q ss_pred --ccceEEEeccCCCC--CCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 --PQRTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~--~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.++.++||+|++.+ .+.+||+||+.|+..... + .+ + .+..+ ....+
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~-~-~~-------------~-~~~~~--------------~~~~~ 142 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-G-VY-------------Q-DIDDE--------------IRNEA 142 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-------------------------CCHH--------------HHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc-c-cc-------------c-CCcHH--------------HHHHH
Confidence 24679999998753 345699999998632100 0 00 0 00000 01234
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM-- 414 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv-- 414 (1403)
+.+++.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. ++|+
T Consensus 143 ~~~l~~~gl~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~ 216 (279)
T 2ihy_A 143 HQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAM 216 (279)
T ss_dssp HHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred HHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 6678999999988888876 9999999999999999999999999999999999999999999999765 7888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
|++.|.. .++.+++|+|++|++|++++.|+++++
T Consensus 217 iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 217 IYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 7776654 477789999999999999999998876
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=340.11 Aligned_cols=197 Identities=24% Similarity=0.351 Sum_probs=168.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
++|+|+|+.+++||+++|+|||||||||||++|+|.++| . |+|.++|+++.....
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---------------------~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---------------------K-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------E-EEEEETTEEGGGSCHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------C-eEEEECCEECCcCCHHHH
Confidence 489999999999999999999999999999999999853 6 999999988754332
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.|+... .. . ...++.+++
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-~~---------------------~-----------------~~~~~~~l~ 112 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHD-KT---------------------R-----------------TELLNDVAG 112 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTCSS-TT---------------------C-----------------HHHHHHHHH
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhhcc-CC---------------------c-----------------HHHHHHHHH
Confidence 35799999999999999999999885210 00 0 012456789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK-------VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~-------illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.+||++..+..+++ |||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++.+. ++|+
T Consensus 113 ~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv 186 (249)
T 2qi9_C 113 ALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAI 186 (249)
T ss_dssp HTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEE
T ss_pred HcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEE
Confidence 99999988887765 99999999999999999999 99999999999999999999999998764 7888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
|++.|+ ..++..++|++++|++|++++.|+++++
T Consensus 187 iivtHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 187 VMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEECSC-HHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEeCC-HHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 887655 4467789999999999999999998876
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=379.43 Aligned_cols=208 Identities=25% Similarity=0.425 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.+...
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 412 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---------------------TSGQILIDGHNIKDFLTGS 412 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---------------------SEEEEEETTEEGGGSCHHH
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++. ||+||+.|+... .+.++..+++...+. .+.
T Consensus 413 ~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~-----~~~-- 459 (578)
T 4a82_A 413 LRNQIGLVQQDNILFSD-TVKENILLGRPT-------------------------ATDEEVVEAAKMANA-----HDF-- 459 (578)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC-----HHH--
T ss_pred HhhheEEEeCCCccCcc-cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc-----HHH--
Confidence 4679999999999876 999999886211 011122222222211 111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
.-.+++..||.+|+ .+..|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+|++.|+
T Consensus 460 -~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~ 535 (578)
T 4a82_A 460 -IMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR 535 (578)
T ss_dssp -HHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSS
T ss_pred -HHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecC
Confidence 22478889999984 5677999999999999999999999999999999999999999999998753 6888887776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ....+|+|++|++|+++++|+++++.+
T Consensus 536 l~--~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 536 LS--TITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp GG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 55 346699999999999999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=337.58 Aligned_cols=202 Identities=27% Similarity=0.358 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---------------------TAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---------------------SBSCEEETTEESTTTSCSC
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 5899999998875432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++ .||+||+.|+... .. + ...++.++
T Consensus 74 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~-~~-----------------------~---------------~~~~~~~l 113 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMA-GTIRENLTYGLEG-DY-----------------------T---------------DEDLWQVL 113 (243)
T ss_dssp CTTTCCEECCSSCCCC-EEHHHHTTSCTTS-CS-----------------------C---------------HHHHHHHH
T ss_pred HHhhEEEEcCCCcccc-ccHHHHHhhhccC-CC-----------------------C---------------HHHHHHHH
Confidence 3467999999998887 5999999885210 00 0 00123455
Q ss_pred HHcCCccccc-------ccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 341 KLLGLDICAD-------TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 341 ~~lgL~~~~d-------t~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
+.+|+.+..+ +.++ +....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|
T Consensus 114 ~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t 190 (243)
T 1mv5_A 114 DLAFARSFVENMPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT 190 (243)
T ss_dssp HHHTCTTTTTSSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE
T ss_pred HHhChHHHHHhCccchhchhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE
Confidence 6667665443 3333 2356799999999999999999999999999999999999999999999986 3789
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+|++.|++. .+ ..+|+|++|++|++++.|+++++..
T Consensus 191 vi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 191 TLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 988877654 44 5699999999999999999988753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.90 Aligned_cols=197 Identities=19% Similarity=0.283 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.+ ++
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~----------~~ 66 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---------------------IQGKIEV----------YQ 66 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---------------------SEEEEEE----------CS
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEE----------ec
Confidence 4699999999999999999999999999999999999865 5899982 35
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccc-cccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++||+|++.+++.+||+||+.|+.... +.. + .+..+ ....++.+++.
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~----------------~-~~~~~--------------~~~~~~~~l~~ 115 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF----------------A-KPKSH--------------DYQVAMQALDY 115 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT----------------C-CCCHH--------------HHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccc----------------c-CCCHH--------------HHHHHHHHHHH
Confidence 7999999999998999999999864211 100 0 00000 01134668899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+.
T Consensus 116 ~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~- 189 (253)
T 2nq2_C 116 LNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP- 189 (253)
T ss_dssp TTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-
T ss_pred cCChHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-
Confidence 9999988888765 9999999999999999999999999999999999999999999998765578888876654
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.++.+++|+|++|++|+ ++.|+++++
T Consensus 190 ~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 190 NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 46778999999999999 999998876
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=340.98 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=162.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceee-EeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSG-YCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|||++++ ||+++|+||||||||||+++|+|.. + .+|+|.++|.+......++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 569999999999 9999999999999999999999987 4 3899999998754211245799 99999877 89999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
||+.+...+. ... ++.++++++.++|. +..++.++ .|||||||||+|||||+.+|++|+|||||+||
T Consensus 92 enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLY-----KLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999875443 111 23478899999998 87777643 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-eEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+++.|+++++ |||++||+++ ++.+.|| ++++|++ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999999853 9999999986 4667899 9999985 789988874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=377.48 Aligned_cols=209 Identities=25% Similarity=0.370 Sum_probs=171.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+...
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---------------------~~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------------------ERGRVEVDELDVRTVKLK 413 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC---------------------SEEEEEESSSBGGGBCHH
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC---------------------CCcEEEECCEEcccCCHH
Confidence 34699999999999999999999999999999999999865 58999999998876543
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++. ||+||+.++.... +.++..+++...+. .+.
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~~-----~~~- 461 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGREDA-------------------------TDDEIVEAAKIAQI-----HDF- 461 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTTC-----HHH-
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccCCCC-------------------------CHHHHHHHHHHhCc-----HHH-
Confidence 4679999999999865 9999998863210 11111222221111 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
...|++..||.+|+ .+..||||||||++|||||+.+|++|+||||||+||+.++.+|.+.|+++. .++|+|++.|
T Consensus 462 --i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH 536 (587)
T 3qf4_A 462 --IISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQ 536 (587)
T ss_dssp --HHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEES
T ss_pred --HHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEec
Confidence 12477889999984 567799999999999999999999999999999999999999999999874 3789998887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+++ ....+|+|++|++|+++++|+++|+.+
T Consensus 537 ~l~--~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 537 KIP--TALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp CHH--HHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred ChH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 664 456899999999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=337.60 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc--ccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|. ++| .+|+|.++|+++.....
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---------------------~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---------------------ERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---------------------EEEEEEETTEECTTSCH
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---------------------CceEEEECCEECCCCCH
Confidence 4699999999999999999999999999999999998 433 58999999998765432
Q ss_pred ----cceEEEeccCCCCCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 ----QRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 ----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.++... .+. ....+ + ....+
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-------------------~~~~~--~-----------~~~~~ 122 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR-------------------EVGVA--E-----------FWTKV 122 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTS-------------------CCCHH--H-----------HHHHH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccc-------------------cCCHH--H-----------HHHHH
Confidence 23489999999999999999999885321 000 00000 0 01134
Q ss_pred HHHHHHcCC-cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 337 DYVLKLLGL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 337 ~~il~~lgL-~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+.+++.+|| ++..++.+++ +|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|
T Consensus 123 ~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi 197 (250)
T 2d2e_A 123 KKALELLDWDESYLSRYLNE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGAL 197 (250)
T ss_dssp HHHHHHHTCCGGGGGSBTTC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEE
T ss_pred HHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEE
Confidence 667899999 5777777652 3999999999999999999999999999999999999999999999864 478888
Q ss_pred EEEecCchhHHhh-cCEEEEEcCCeEEEecChhh
Q 037155 416 VALLQPAPETYDL-FDDIILISEGQIVYHGPRDN 448 (1403)
Q Consensus 416 i~~~q~~~~~~~~-fD~IilL~~G~iv~~G~~~~ 448 (1403)
++.|++. ++..+ +|+|++|++|++++.|+++.
T Consensus 198 ~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 198 VITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred EEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 8877654 56666 59999999999999999873
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=338.45 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=168.0
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++. ...+.+|+|||++|++||++||+||||||||||+++|+|... + +|+|.++|.+..
T Consensus 18 l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhh
Confidence 677887765421 011459999999999999999999999999999999999865 2 699999998763
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPGV 1022 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~~ 1022 (1403)
. ..+++.+||++|++.+++ .||+||+.++.. .... +.+.++++.+++.+.. ++.++. .+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~ 153 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KG 153 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SS
T ss_pred hcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-Cc
Confidence 2 335667999999998876 599999987521 1111 2356677777765432 333332 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++ |
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~-G 229 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK-G 229 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999965 8999999999863 4 56999999985 7
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 230 ~i~~~g~~ 237 (260)
T 2ghi_A 230 KIVEKGTH 237 (260)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99988874
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.34 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=162.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|||+.+++|++++|+|||||||||||++|+|.++ .+|+|.++|+++....
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------------------~~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----------------------AEGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC----------------------CEEEEEETTEEGGGBCHHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC----------------------CCeEEEECCEEhhhcCHHH
Confidence 469999999999999999999999999999999999874 2699999998875433
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++ .||+||+.|+... . . .++..+++...+ +.
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~-~----------------------~~~~~~~l~~~~---------l~ 135 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKLD--A-T----------------------DEEVIKATKSAQ---------LY 135 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCTT--C-C----------------------HHHHHHHHHHTT---------CH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCCC--C-C----------------------HHHHHHHHHHhC---------CH
Confidence 2467999999998886 5999999885210 0 0 000001110000 01
Q ss_pred HH-cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 341 KL-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 341 ~~-lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
+. -++++..||.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|
T Consensus 136 ~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH 212 (260)
T 2ghi_A 136 DFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAH 212 (260)
T ss_dssp HHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECS
T ss_pred HHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcC
Confidence 11 1466667777763 4567999999999999999999999999999999999999999999999853 788888877
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++. .+ ..+|+|++|++|++++.|+++++..
T Consensus 213 ~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 213 RLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp SGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 654 33 5699999999999999999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=336.26 Aligned_cols=222 Identities=22% Similarity=0.268 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++|++++|+|||||||||||++|+|.... ++.+|+|.++|.++.....
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-------------------~p~~G~I~~~g~~i~~~~~~~ 93 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-------------------EVTGGTVEFKGKDLLALSPED 93 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-------------------EEEEEEEEETTEEGGGSCHHH
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-------------------CCCCeEEEECCEECCcCCHHH
Confidence 4699999999999999999999999999999999998410 1258999999988755432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.+..... . . ..+.. ....++ ....++.+
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~------------~-~--~~~~~-~~~~~~-----------~~~~~~~~ 146 (267)
T 2zu0_C 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV------------R-S--YRGQE-TLDRFD-----------FQDLMEEK 146 (267)
T ss_dssp HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHH------------H-H--GGGCC-CCCHHH-----------HHHHHHHH
T ss_pred HhhCCEEEEccCccccccccHHHHHHHHHHhh------------h-h--hhccc-cCCHHH-----------HHHHHHHH
Confidence 234999999999999999999998742100 0 0 00000 000000 01235668
Q ss_pred HHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.+||+ +..+..++. .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.
T Consensus 147 l~~~gl~~~~~~~~~~~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivt 221 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVT 221 (267)
T ss_dssp HHHTTCCTTTTTSBTTT----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEEC
T ss_pred HHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 8999996 466766641 3999999999999999999999999999999999999999999998854 478888877
Q ss_pred ecCchhHHhh-cCEEEEEcCCeEEEecChhhHHHHHHHcCC
Q 037155 419 LQPAPETYDL-FDDIILISEGQIVYHGPRDNVLEFFEQMGF 458 (1403)
Q Consensus 419 ~q~~~~~~~~-fD~IilL~~G~iv~~G~~~~~~~~F~~~G~ 458 (1403)
|.+ .++..+ +|+|++|++|++++.|+++++.. .+..||
T Consensus 222 Hd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 222 HYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp SSG-GGGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred eCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 654 355555 89999999999999999988753 344444
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=409.45 Aligned_cols=213 Identities=26% Similarity=0.375 Sum_probs=179.4
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC
Q 037155 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV 260 (1403)
Q Consensus 181 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~ 260 (1403)
+++.++|+|||++|+|||.+||+||+|||||||+++|.|+++| .+|+|.+||+++.+..
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---------------------~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---------------------LGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC---------------------SSSEEEETTEETTTBC
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC---------------------CCCEEEECCEEhhhCC
Confidence 3456799999999999999999999999999999999999865 5899999999998876
Q ss_pred c---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 P---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ~---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
. |+.++||+|++.+|.. ||||||.|+..- ++.+.++..+++..++.+ |
T Consensus 1148 ~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~-----~ 1198 (1321)
T 4f4c_A 1148 PEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIH-----N 1198 (1321)
T ss_dssp HHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCH-----H
T ss_pred HHHHHhheEEECCCCEeeCc-cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCCh-----H
Confidence 4 5789999999999976 999999886311 112233444555444321 2
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+ -.|++++||.||+ .+.+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|++
T Consensus 1199 ~I---~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~I 1272 (1321)
T 4f4c_A 1199 FI---AELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVI 1272 (1321)
T ss_dssp HH---HTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEE
T ss_pred HH---HcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEe
Confidence 22 2589999999995 577799999999999999999999999999999999999999999998764 47899988
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.|.. ++...+|+|+||++|+|+++|+++++++
T Consensus 1273 AHRL--sTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1273 AHRL--NTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp CSSS--STTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred ccCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7755 4778899999999999999999999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=376.90 Aligned_cols=208 Identities=24% Similarity=0.363 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+...
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---------------------~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV---------------------DRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC---------------------SEEEEEETTEEGGGSCHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC---------------------CCeEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+||+.++.... .+.+ ..+++...+. +..+
T Consensus 427 ~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~----------------------~~~~---~~~~~~~~~~------~~~~ 474 (598)
T 3qf4_B 427 LRSSIGIVLQDTILFS-TTVKENLKYGNPGA----------------------TDEE---IKEAAKLTHS------DHFI 474 (598)
T ss_dssp HHHHEEEECTTCCCCS-SBHHHHHHSSSTTC----------------------CTTH---HHHHTTTTTC------HHHH
T ss_pred HHhceEEEeCCCcccc-ccHHHHHhcCCCCC----------------------CHHH---HHHHHHHhCC------HHHH
Confidence 467999999999886 59999999862110 0111 1111111110 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.+++..||.+|+ .+..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.|+
T Consensus 475 --~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~ 549 (598)
T 3qf4_B 475 --KHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHR 549 (598)
T ss_dssp --HTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCC
T ss_pred --HhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 2477888999984 567799999999999999999999999999999999999999999999885 37899998887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++ ....+|+|++|++|+++++|+++++.+
T Consensus 550 l~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 550 LN--TIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp TT--HHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 65 345699999999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=368.55 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.+...
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---------------------DEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---------------------SEEEEEETTEETTTBCHHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC---------------------CCCeEEECCEEccccCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++. ||+||+.++.. .. .+.++..+++...+. +..+
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~l------~~~~ 463 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYART-EE-----------------------YSREQIEEAARMAYA------MDFI 463 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTTC------HHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcCC------HHHH
Confidence 4679999999998875 99999998631 00 001111122221111 1112
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .++++.||.+|+ .+..||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++.+ ++|+|++.|+
T Consensus 464 ~--~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 538 (582)
T 3b60_A 464 N--KMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR 538 (582)
T ss_dssp H--HSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSC
T ss_pred H--hccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecc
Confidence 2 256788999985 5678999999999999999999999999999999999999999999999863 7899888877
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ..+.+|+|++|++|++++.|+++++.+
T Consensus 539 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 539 LS--TIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp GG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HH--HHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 64 446799999999999999999998864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=351.42 Aligned_cols=200 Identities=26% Similarity=0.285 Sum_probs=163.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|||++|++||+++|+|||||||||||++|+|+++ .+|+|.++|+++....+
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----------------------~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----------------------TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----------------------EEEEEEESSCBTTSSCHHH
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----------------------CCeEEEECCEECCcCChHH
Confidence 469999999999999999999999999999999999874 37999999999876654
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+ +||+||+.+..... ...++.++
T Consensus 92 ~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~-----------------------------------------~~~v~~~l 129 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFS-GTFRKNLDPNAAHS-----------------------------------------DQEIWKVA 129 (390)
T ss_dssp HHHTEEEESCCCCCCS-EEHHHHHCTTCCSC-----------------------------------------HHHHHHHH
T ss_pred HhCCEEEEcCCcccCc-cCHHHHhhhccccC-----------------------------------------HHHHHHHH
Confidence 478999999999997 69999997532100 00123456
Q ss_pred HHcCCcccccccccC------ccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 341 KLLGLDICADTMVGD------EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~------~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+.+||.+..+..... +.+..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+.|+
T Consensus 130 ~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tv 207 (390)
T 3gd7_A 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTV 207 (390)
T ss_dssp HHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCE
T ss_pred HHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEE
Confidence 667776554444321 2345599999999999999999999999999999999999999999998753 36787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|++.|+. +....+|+|++|++|+|+..|+++++.+
T Consensus 208 i~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 208 ILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7776664 5667799999999999999999998853
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=368.12 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+..
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV---------------------DSGSICLDGHDVRDYKLTN 414 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 5899999999876543
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++. ||+||+.++.. .. .+.++..+++...+. +..+
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~l------~~~~ 463 (582)
T 3b5x_A 415 LRRHFALVSQNVHLFND-TIANNIAYAAE-GE-----------------------YTREQIEQAARQAHA------MEFI 463 (582)
T ss_pred HhcCeEEEcCCCccccc-cHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCCC------HHHH
Confidence 24679999999998875 99999998631 00 000111122211111 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .++++.||.+|+ .+..||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++|+|++.|+
T Consensus 464 ~--~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 538 (582)
T 3b5x_A 464 E--NMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHR 538 (582)
T ss_pred H--hCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecC
Confidence 2 256778999985 5677999999999999999999999999999999999999999999998753 7899988877
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ..+.+|+|++|++|++++.|+++++.+
T Consensus 539 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 539 LS--TIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 64 446799999999999999999998853
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=331.85 Aligned_cols=194 Identities=20% Similarity=0.201 Sum_probs=163.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ | .+|+|.++|+++.....++
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p---------------------~~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P---------------------YSGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C---------------------CEEEEEETTEEGGGCSCCT
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C---------------------CCcEEEECCEECcchHHhh
Confidence 469999999999 9999999999999999999999998 6 4899999998764321256
Q ss_pred eEE-EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCA-YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~-yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++ ||+|++.+ .+||+||+.|..+... . ....++.+++.
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~---------------------~-----------------~~~~~~~~l~~ 114 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKG---------------------L-----------------DRDLFLEMLKA 114 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTC---------------------C-----------------CHHHHHHHHHH
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcc---------------------h-----------------HHHHHHHHHHH
Confidence 799 99999876 8899999988532110 0 01124567889
Q ss_pred cCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 343 LGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 343 lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+||+ +..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++. . |+|++.|++
T Consensus 115 ~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~ 185 (263)
T 2pjz_A 115 LKLGEEILRRKLYK-----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL 185 (263)
T ss_dssp TTCCGGGGGSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG
T ss_pred cCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH
Confidence 9998 888887765 99999999999999999999999999999999999999999998764 2 777776654
Q ss_pred chhHHhhcC-EEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFD-DIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD-~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++.+++| ++++|++|++++.|+++++.
T Consensus 186 -~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 186 -DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp -GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred -HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 46778999 99999999999999998875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=323.28 Aligned_cols=188 Identities=17% Similarity=0.277 Sum_probs=155.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccce
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRT 264 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~ 264 (1403)
++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|.++. ..++.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~~~--~~~~~ 79 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---------------------LKGEIIYNGVPIT--KVKGK 79 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEGG--GGGGG
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCeEEEECCEEhh--hhcCc
Confidence 699999999999999999999999999999999999865 5899999998765 24677
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++||+|++.+++.+||+||+.|+.+..+. . .+ ...++.+++.+|
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~--------------------~-~~---------------~~~~~~~l~~~g 123 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGV--------------------K-VN---------------KNEIMDALESVE 123 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTC--------------------C-CC---------------HHHHHHHHHHTT
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCC--------------------c-hH---------------HHHHHHHHHHcC
Confidence 99999999999999999999886432110 0 00 113456789999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++. +..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. ++|+|++.|++. +
T Consensus 124 l~~~-~~~~~~-----LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~ 195 (214)
T 1sgw_A 124 VLDL-KKKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-S 195 (214)
T ss_dssp CCCT-TSBGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-T
T ss_pred CCcC-CCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-H
Confidence 9877 766654 9999999999999999999999999999999999999999999998754 788888877654 6
Q ss_pred HHhhcCEEEEEcCCeE
Q 037155 425 TYDLFDDIILISEGQI 440 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~i 440 (1403)
+..++|+|++ ..|+|
T Consensus 196 ~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 196 YCDVNENLHK-YSTKI 210 (214)
T ss_dssp TSSEEEEGGG-GBC--
T ss_pred HHHhCCEEEE-eCCcc
Confidence 6777777764 44443
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=353.58 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=173.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.+. .++..+|+|||++|++||+++|+|||||||||||++|+|... .+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 467888876542 134569999999999999999999999999999999999764 479999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccC------CCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL------PGV 1022 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 1022 (1403)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.+..++.... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 43 335678999999999887 69999996421 111 23478899999998877765431 112
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .++|||+++|+++ ....||++++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999874 4899999999975 4466999999985 8
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=324.18 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=156.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 7 l~~~~l~~~y~-----------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g---- 69 (229)
T 2pze_A 7 VVMENVTAFWE-----------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---- 69 (229)
T ss_dssp EEEEEEEECSS-----------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC----
Confidence 56777765431 1235699999999999999999999999999999999998663 489999998
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCccc-------ccccCCCCCCC
Q 037155 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD-------ALVGLPGVNGL 1025 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~~L 1025 (1403)
.+||++|++.+++. ||+||+.++.. .... ..+++++.+++.+..+ +.++. .+..|
T Consensus 70 ------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 70 ------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITL 131 (229)
T ss_dssp ------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTS
T ss_pred ------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcC
Confidence 38999999988875 99999987531 1111 1234455555543222 22332 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ .+ +.||++++|++ |++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999997 45654 4899999999975 34 56999999985 789
Q ss_pred EEecCC
Q 037155 1105 IYAGPL 1110 (1403)
Q Consensus 1105 ~~~g~~ 1110 (1403)
++.|+.
T Consensus 208 ~~~g~~ 213 (229)
T 2pze_A 208 YFYGTF 213 (229)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 888874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=326.60 Aligned_cols=199 Identities=23% Similarity=0.382 Sum_probs=154.7
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+. .+++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 56677765431 113569999999999999999999999999999999999875 3589999998
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC------CCc-ccccccCCCCCCC
Q 037155 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL------KPL-RDALVGLPGVNGL 1025 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L------~~~-~~~~vg~~~~~~L 1025 (1403)
.+||++|++. ++.+||+||+.+.... . .+. .+++++.+++ .+. .++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~----~--~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL----E--EPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC----C--TTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc----C--HHH----HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2899999986 4688999999885321 1 111 2233333333 221 1112222 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 443 48999999999873 4 57999999985 7
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 99988874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=348.65 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=174.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEh
Confidence 5788888876521 124699999999999999999999999999999999997663 479999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.+++. ||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 42 4466789999999988874 99999998531 1 122 23467888888886554 3445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|||+++|+++ ..+.||++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 999999999986 3457999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 899998874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=320.24 Aligned_cols=196 Identities=22% Similarity=0.321 Sum_probs=152.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g---------- 69 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---------------------SEGKIKHSG---------- 69 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEECS----------
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---------------------CccEEEECC----------
Confidence 5699999999999999999999999999999999999865 589999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|++.+++. ||+||+.|+..... .+ .++..+.. + .+..++.
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~---------------------~~~~~~~~---~------l~~~~~~- 115 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVSYDE--YR---------------------YRSVIKAC---Q------LEEDISK- 115 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSCCCH--HH---------------------HHHHHHHT---T------CHHHHTT-
T ss_pred EEEEEecCCcccCC-CHHHHhhccCCcCh--HH---------------------HHHHHHHh---C------cHHHHHh-
Confidence 49999999988885 99999998632100 00 00000000 0 0111221
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCc
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFL-KQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~~ 422 (1403)
++...++.+++ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.+ +++. .++|+|++.|++.
T Consensus 116 -~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~ 191 (229)
T 2pze_A 116 -FAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME 191 (229)
T ss_dssp -STTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH
T ss_pred -CcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH
Confidence 33445566653 35679999999999999999999999999999999999999999974 5543 3678888877643
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++ ..+|+|++|++|++++.|+++++.
T Consensus 192 -~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 192 -HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred -HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 44 469999999999999999998874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=321.32 Aligned_cols=196 Identities=23% Similarity=0.343 Sum_probs=152.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g---------- 66 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---------------------VEGHVAIKG---------- 66 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---------------------EEEEEEECS----------
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECC----------
Confidence 4699999999999999999999999999999999999865 589999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++||+|++.+ +.+||+||+.|+.... . ...++..+++ .+.+.+
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~~--~---------------------~~~~~~~~~~------------~l~~~~ 110 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQLE--E---------------------PYYRSVIQAC------------ALLPDL 110 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCCC--T---------------------THHHHHHHHT------------TCHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCccccC--H---------------------HHHHHHHHHH------------hhHHHH
Confidence 39999999865 5789999999863211 0 0000110100 012223
Q ss_pred CC-cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEe
Q 037155 344 GL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK---QMVHIMDVTMIVALL 419 (1403)
Q Consensus 344 gL-~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~---~l~~~~~~tvii~~~ 419 (1403)
++ +...+|.++ .....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+ ++. .++|+|++.|
T Consensus 111 ~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH 187 (237)
T 2cbz_A 111 EILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTH 187 (237)
T ss_dssp TTSTTGGGSEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECS
T ss_pred Hhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEec
Confidence 32 223444444 3456699999999999999999999999999999999999999999985 332 3788888887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++. .+ ..+|+|++|++|++++.|+++++.+
T Consensus 188 ~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 188 SMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp CST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred ChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 765 33 5799999999999999999988753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=363.03 Aligned_cols=212 Identities=24% Similarity=0.360 Sum_probs=173.3
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|+++.++. +++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 45888998876521 235699999999999999999999999999999999998764 48999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
... ..+++.+|||+|++.+++. ||+||+.++. + .... +.+.++++..++.+ -.|+.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 643 4466789999999988876 9999998852 1 1122 23556666666543 234555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
...||||||||++|||||+++|+||+|||||||||+.++..+++.++++. +|+|+|+++|+++. + +.||++++|++
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN 550 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 34699999999999999999999999999999999999999999999985 48999999999873 4 56999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 551 -G~i~~~g~~ 559 (578)
T 4a82_A 551 -GHIVETGTH 559 (578)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999985
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=364.99 Aligned_cols=212 Identities=21% Similarity=0.301 Sum_probs=172.4
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 35889998876521 235699999999999999999999999999999999998764 48999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
... ..+++.+|||+|++.+++. ||+||+.++.. ....+ .+.++++..++.+ -.|+.++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 643 3456789999999988865 99999987531 11222 2344555555433 345556644
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....||++++|++
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 34799999999999999999999999999999999999999999999985 5899999999986 3468999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 553 -G~i~~~g~~ 561 (587)
T 3qf4_A 553 -GKVAGFGTH 561 (587)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999985
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=359.19 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=174.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 4788888765420 124699999999999999999999999999999999998664 489999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.+++. ||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456789999999988875 99999998531 1 122 23367888888886543 4455544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999865 9999999999873 357999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 899998874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=359.13 Aligned_cols=211 Identities=23% Similarity=0.360 Sum_probs=170.2
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|+++.++ +++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 3588888877542 134699999999999999999999999999999999998764 48999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1020 (1403)
... ..+++.+|||+|++.+++ .||+||+.++.. +.+. +.++++++..++.+.. |+.+|..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 643 446778999999998875 599999987521 1111 1245555555554332 3333322
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++. + +.||++++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 24699999999999999999999999999999999999999999999986 59999999999973 4 56999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 899999974
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=317.87 Aligned_cols=184 Identities=23% Similarity=0.376 Sum_probs=147.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
+.+|+|||++|++|+++||+||||||||||+++|+|... +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 458999999999999999999999999999999999876 3589999998 38999999988775 9999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA-------LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|+. +. . .... .++++++.+++.+..+. .++. .+..||||||||++|||||+.+|++|+|||
T Consensus 118 nl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 1 1111 13445555665433222 2221 235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1051 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |++++.|+.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~ 242 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 242 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999974 5554 4899999999975 3356999999985 789888875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=314.99 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=148.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g---------- 99 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---------------------SEGKIKHSG---------- 99 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---------------------EEEEEECCS----------
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCcEEEECC----------
Confidence 3589999999999999999999999999999999999865 589999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++||+|++.+++. ||+||+. +.... ... .++..+.. + .+..++.
T Consensus 100 ~i~~v~Q~~~l~~~-tv~enl~-~~~~~----~~~-------------------~~~~~~~~---~------l~~~l~~- 144 (290)
T 2bbs_A 100 RISFCSQNSWIMPG-TIKENII-GVSYD----EYR-------------------YRSVIKAC---Q------LEEDISK- 144 (290)
T ss_dssp CEEEECSSCCCCSS-BHHHHHH-TTCCC----HHH-------------------HHHHHHHT---T------CHHHHHT-
T ss_pred EEEEEeCCCccCcc-cHHHHhh-Ccccc----hHH-------------------HHHHHHHh---C------hHHHHHh-
Confidence 48999999988875 9999997 42110 000 00000000 0 0111222
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCc
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFL-KQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~~ 422 (1403)
++...++.+++ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.+ +++. .++|+|++.|++.
T Consensus 145 -~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~ 220 (290)
T 2bbs_A 145 -FAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME 220 (290)
T ss_dssp -STTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH
T ss_pred -ccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHH
Confidence 33344555553 35669999999999999999999999999999999999999999974 4443 3778888877653
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.+ ..+|+|++|++|++++.|+++++.
T Consensus 221 -~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 221 -HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp -HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred -HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 44 569999999999999999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-32 Score=369.41 Aligned_cols=211 Identities=24% Similarity=0.345 Sum_probs=170.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+.++|+|+|++|+|||+++|+||||||||||+++|+|.++| .+|+|.++|+++.....
T Consensus 1045 ~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---------------------~~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---------------------MAGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC---------------------SEEEEESSSSCTTSSCHH
T ss_pred CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---------------------CCCEEEECCEEcccCCHH
Confidence 34699999999999999999999999999999999999865 58999999999876543
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++ .||+|||.++...... +.++..+++...+. +..
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~~------~~~ 1153 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVV-----------------------SYEEIVRAAKEANI------HQF 1153 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHTC------HHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhCc------HHH
Confidence 577999999998775 6999999886321110 01111122111110 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
.-.+++++||.||+ .+..|||||||||+|||||+++|+||+|||||+|||+.+...|.+.|++.. .|+|+|++.|
T Consensus 1154 --i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH 1228 (1284)
T 3g5u_A 1154 --IDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAH 1228 (1284)
T ss_dssp --HSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECS
T ss_pred --HHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEec
Confidence 23478899999995 567799999999999999999999999999999999999999999998753 4788888777
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
... + ...+|+|++|++|+++++|+++++.+
T Consensus 1229 ~l~-~-i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1229 RLS-T-IQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp CTT-G-GGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CHH-H-HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 654 3 46699999999999999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=315.86 Aligned_cols=191 Identities=27% Similarity=0.315 Sum_probs=160.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
.|+++|+.+++||+++|+|||||||||||++|+|.++| .+|+|.+ .+.+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~----------~~~i 419 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP---------------------TEGKVEW----------DLTV 419 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SBSCCCC----------CCCE
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEE----------eeEE
Confidence 57788888999999999999999999999999999865 4788875 2469
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+|++|+....+.+||+|++...... .. . ....++.+++.+||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~-----------~~---~------------------------~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSS-----------KL---N------------------------SNFYKTELLKPLGI 461 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHH-----------HH---H------------------------CHHHHHHTHHHHTC
T ss_pred EEEecCccCCCCCcHHHHHHhhhcc-----------CC---C------------------------HHHHHHHHHHHcCC
Confidence 9999998777889999988542000 00 0 01134567899999
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.| ...++
T Consensus 462 ~~~~~~~~~~-----LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH-d~~~~ 535 (607)
T 3bk7_A 462 IDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMI 535 (607)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHH
T ss_pred chHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHH
Confidence 9888888876 99999999999999999999999999999999999999999999997666788887654 55688
Q ss_pred HhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 426 YDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 426 ~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
..++|+|++|++ |+++..|+++++..
T Consensus 536 ~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 536 DYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 889999999986 88899999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=311.45 Aligned_cols=191 Identities=27% Similarity=0.312 Sum_probs=158.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
.|+++|+.+++||+++|+|||||||||||++|+|.++| .+|+|.+ ...+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~i~~----------~~~i 349 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---------------------TEGKIEW----------DLTV 349 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SBCCCCC----------CCCE
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCeEEEE----------CceE
Confidence 57777888899999999999999999999999999865 4788875 2369
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+|++|+....+.+||.|++...... .. . ....++.+++.+||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~-----------~~----------~-----------------~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDAS-----------KL----------N-----------------SNFYKTELLKPLGI 391 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHH-----------HH----------T-----------------CHHHHHHTTTTTTC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhcc-----------CC----------C-----------------HHHHHHHHHHHcCC
Confidence 9999998777889999987542000 00 0 01124557888999
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+..+..+++ |||||||||+||+||+.+|++|+|||||+|||..++.+|.+.|+++++..+.|+|++.| ...++
T Consensus 392 ~~~~~~~~~~-----LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~ 465 (538)
T 1yqt_A 392 IDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMI 465 (538)
T ss_dssp GGGTTSBGGG-----CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHH
T ss_pred hhhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHH
Confidence 8888888876 99999999999999999999999999999999999999999999987655778877654 56688
Q ss_pred HhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 426 YDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 426 ~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
..+||+|++|++ |+++..|+++++..
T Consensus 466 ~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 466 DYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 899999999986 78999999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=306.14 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=157.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
.|+++|+.+++||+++|+||||||||||+++|+|.++| .+|+|.++| +.+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~~---------~~i 332 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA---------------------DEGSVTPEK---------QIL 332 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SBCCEESSC---------CCE
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECC---------eee
Confidence 56777888999999999999999999999999999865 589998765 358
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+|++|+......+||+||+.+..... . .. .....+.+++.+||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNL 375 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTG
T ss_pred EeechhcccccCCCHHHHHHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCC
Confidence 99999977667889999997632100 0 00 01123556788999
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++. |...++
T Consensus 376 ~~~~~~~~~~-----LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hdl~~~ 449 (538)
T 3ozx_A 376 HRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HDLSIH 449 (538)
T ss_dssp GGCTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC-SCHHHH
T ss_pred HHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHH
Confidence 9888888876 9999999999999999999999999999999999999999999999876677877765 556688
Q ss_pred HhhcCEEEEEcC--CeEEEecChhhHH
Q 037155 426 YDLFDDIILISE--GQIVYHGPRDNVL 450 (1403)
Q Consensus 426 ~~~fD~IilL~~--G~iv~~G~~~~~~ 450 (1403)
..+||+|++|++ |.+...|++.++.
T Consensus 450 ~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 450 DYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHhCCEEEEEeCCcceeccCCChHHHH
Confidence 899999999986 5667777766554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=316.55 Aligned_cols=182 Identities=19% Similarity=0.283 Sum_probs=149.7
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCC-CCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD-IHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lT 974 (1403)
+++.+|+|+||++++|++++|+|||||||||||++|+| |.| +|.+... ...++|++|+. .+++.+|
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc---ceeEEEEcccccccccCCc
Confidence 34679999999999999999999999999999999994 111 3433221 12368999874 6778999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
|.|++.+ ... .. .+.++++++.+|+. +..++.++ .|||||||||+||++|+.+|+||||||||+
T Consensus 513 v~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999976 111 11 34578999999994 56676654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~g~~ 1110 (1403)
|||+.++..+.+.|++ .|+|||++||+++ .+.+.||++++|++ |+++ +.|+.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 9999999999999998 5899999999976 57788999999985 6775 67875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-29 Score=317.92 Aligned_cols=205 Identities=22% Similarity=0.301 Sum_probs=135.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHH---------------------HhhcCCCCC--cee---EEEEEEcCccC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---EGDIKISGYPK 951 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~--~~~---~G~i~i~g~~~ 951 (1403)
..+|+||||+|++||++||+||||||||||+ +++.|...+ +.+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 566654322 112 35677777654
Q ss_pred ChhhhcceeeEeecCCCC-------------------CCCCCHHHHHHHHHhhhCCCCCcHHHHH------HHHHHHHHH
Q 037155 952 KQETFARVSGYCEQTDIH-------------------SPHVTLYESLLYSAWLRLSSDVDTKKRK------IFVDEVMEL 1006 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~-------------------~~~lTv~e~l~~~~~lr~~~~~~~~~~~------~~v~~~l~~ 1006 (1403)
... .++.+||++|...+ ++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 23445666664432 356899999987533221110 000000 011245888
Q ss_pred cCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 037155 1007 VELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1007 l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1083 (1403)
+||.+. .++.++ .|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 466544 799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHhcCeEEEEe-----cCcEEEEecCCC
Q 037155 1084 PSIDIFEAFDELLLMK-----RGGRVIYAGPLG 1111 (1403)
Q Consensus 1084 ~~~~~~~~~d~i~ll~-----~gG~~~~~g~~~ 1111 (1403)
++ ....||++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 75 456799999992 358999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=305.95 Aligned_cols=193 Identities=24% Similarity=0.236 Sum_probs=158.4
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC
Q 037155 184 VQILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~G-----e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~ 258 (1403)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++| .+|+. +
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p---------------------~~G~~------~-- 410 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP---------------------DEGQD------I-- 410 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC---------------------SBCCC------C--
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCCcC------c--
Confidence 35789999999999 77999999999999999999999865 46652 1
Q ss_pred CCccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 259 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 259 ~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.+..++|++|+.......||+|++....+ +. ..+ ....+.
T Consensus 411 --~~~~i~~~~q~~~~~~~~tv~e~~~~~~~--~~-------------------~~~-----------------~~~~~~ 450 (608)
T 3j16_B 411 --PKLNVSMKPQKIAPKFPGTVRQLFFKKIR--GQ-------------------FLN-----------------PQFQTD 450 (608)
T ss_dssp --CSCCEEEECSSCCCCCCSBHHHHHHHHCS--ST-------------------TTS-----------------HHHHHH
T ss_pred --cCCcEEEecccccccCCccHHHHHHHHhh--cc-------------------ccc-----------------HHHHHH
Confidence 23469999999766666799998753211 00 000 012345
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||.+..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..|.|+|++.
T Consensus 451 ~l~~l~l~~~~~~~~~~-----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivt 525 (608)
T 3j16_B 451 VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525 (608)
T ss_dssp THHHHTSTTTSSSBSSS-----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 78899999988888876 9999999999999999999999999999999999999999999998765688888765
Q ss_pred ecCchhHHhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
| ...++..++|+|++|++ |+++..|+++++..
T Consensus 526 H-dl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 526 H-DFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp S-CHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred C-CHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 4 55688899999999986 89999999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-30 Score=318.64 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=112.6
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhh
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWL 985 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l 985 (1403)
+.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|++. .++.++. .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~-----~ 329 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA-----Y 329 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----H
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----H
Confidence 37999999999999999999999999985321 121 12345555431 1122221 1
Q ss_pred hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 037155 986 RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----AA 1060 (1403)
Q Consensus 986 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~-----~~ 1060 (1403)
+. +.+ +++ +...|+....+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .+
T Consensus 330 ~~--g~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SW--GMD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TT--SCC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred Hc--CCC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11 111 112 2245555554443 3479999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCc---------HHHHHhcCeEEEEec
Q 037155 1061 AIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1061 ~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~d~i~ll~~ 1100 (1403)
..+.++++.+++.|+|||+++|++. ..+...+|++++|.+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE
Confidence 9999999999888999999999971 235678999999986
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=274.05 Aligned_cols=108 Identities=24% Similarity=0.312 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 037155 335 VTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAA---KVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410 (1403)
Q Consensus 335 ~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 410 (1403)
....+|+.+||... .+..+ ..|||||||||+||+||+.+| ++|+|||||+|||+.+...+++.|+++++ .
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 34567889999753 23333 459999999999999999865 79999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHH
Q 037155 411 DVTMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVL 450 (1403)
Q Consensus 411 ~~tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~ 450 (1403)
|.|+|++.|.. +....+|+|++| ++|+|++.|+++++.
T Consensus 858 G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 88888876654 345679999999 899999999999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=272.38 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=92.2
Q ss_pred HHHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 337 DYVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAA---KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 337 ~~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999987 66777765 9999999999999999764 99999999999999999999999999976 478
Q ss_pred EEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHH
Q 037155 413 TMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVL 450 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~ 450 (1403)
|+|++.|... + ...+|+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 8888766543 4 4789999999 789999999999875
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-24 Score=260.12 Aligned_cols=203 Identities=17% Similarity=0.150 Sum_probs=140.4
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC------------------------------------ceeEE
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYIEG 942 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 942 (1403)
.+|+++|+.+.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999542210 01157
Q ss_pred EEEEcCccCChhh---h-cceeeEeecCCCCCCCCCHHHHHHHHHhhh-----------------------CCCCCc---
Q 037155 943 DIKISGYPKKQET---F-ARVSGYCEQTDIHSPHVTLYESLLYSAWLR-----------------------LSSDVD--- 992 (1403)
Q Consensus 943 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr-----------------------~~~~~~--- 992 (1403)
.+.+||.+.+... . ...+++++|++.+... +..+...|.-... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2348999998766532 4444433321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCCcc----------------cc---cccC---
Q 037155 993 -------------------------------TKKRKIFVDEVMELVELKPLR----------------DA---LVGL--- 1019 (1403)
Q Consensus 993 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~vg~--- 1019 (1403)
.......+.+.++.+++.... +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344556666654310 00 1110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 037155 1020 ---PGVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1093 (1403)
Q Consensus 1020 ---~~~~~-LSgGqrqRl~IA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1093 (1403)
..+.. ||||||||++||++|+.+| ++|||||||+|||+.+...+.+.|++++ +|+|||+|||++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 01112 6999999999999999999 9999999999999999999999999997 589999999997 4567899
Q ss_pred eEEEE----ecCcEEEEe
Q 037155 1094 ELLLM----KRGGRVIYA 1107 (1403)
Q Consensus 1094 ~i~ll----~~gG~~~~~ 1107 (1403)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 64 666543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=269.74 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 037155 335 VTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGA---AKVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410 (1403)
Q Consensus 335 ~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~---p~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 410 (1403)
.+..+++.+||... .+..+++ |||||||||+||++|+.+ |++|+|||||+|||..+...|.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999873 5666654 999999999999999996 799999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHH
Q 037155 411 DVTMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVL 450 (1403)
Q Consensus 411 ~~tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~ 450 (1403)
|.|+|++.|. ..++ ..+|+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 7888877654 4455 889999999 799999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-26 Score=275.29 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=144.4
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcce-E-EEECCccCCCCCccceE
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASG-K-ITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~ 265 (1403)
.++|+.+++|++++|+||||||||||+++|+|.+.+ .+| + |.++|. +++.+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---------------------~~G~~pI~vdg~------~~~~i 181 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---------------------FNAYQPLYINLD------PQQPI 181 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---------------------HHCCCCEEEECC------TTSCS
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---------------------cCCceeEEEcCC------ccCCe
Confidence 379999999999999999999999999999999854 479 8 999982 36679
Q ss_pred EEeccCCC---CCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 266 AYISQHDL---HHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 266 ~yv~Q~d~---~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+|++|+.. +.+.+||+||+ |+.+. .+... . ..++.+++
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~-------------------~------------------~~~~~ll~ 223 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATL-------------------L------------------HNKQPMVK 223 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS-------------------S------------------CCBCCEEC
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcch-------------------H------------------HHHHHHHH
Confidence 99999983 55678999999 76442 11000 0 00112456
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHH--HhcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEM--LVGAAKV----LLMDE-ISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~a--L~~~p~i----llLDE-ptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.+||++..+ . ..|||||||||++|+| |+.+|++ |+||| ||++||+. ...+.+.+++ .+.|+
T Consensus 224 ~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tv 291 (460)
T 2npi_A 224 NFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNI 291 (460)
T ss_dssp CCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCE
T ss_pred HhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCE
Confidence 678877665 3 4599999999999999 9999999 99999 99999999 4445554443 46788
Q ss_pred EEEEecCch-----hHHhhcCE-----EEEEc-CCeEEEecChhhHH
Q 037155 415 IVALLQPAP-----ETYDLFDD-----IILIS-EGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~-----~~~~~fD~-----IilL~-~G~iv~~G~~~~~~ 450 (1403)
|+++|++.. ++.+++|+ |++|+ +|+++ .|+++++.
T Consensus 292 iiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 888887662 45588999 99999 99999 99987663
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-26 Score=277.96 Aligned_cols=196 Identities=15% Similarity=0.080 Sum_probs=148.5
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-E-EEEcCccCChhhhcceeeEeecCCC---CCCCCCHH
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-D-IKISGYPKKQETFARVSGYCEQTDI---HSPHVTLY 976 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~lTv~ 976 (1403)
.++|+.+++|++++|+||||||||||+++|+|...+ .+| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 479999999999999999999999999999997652 368 8 999983 2466899999874 45568999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1050 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~a--L~~~P~i----llLDE 1050 (1403)
||+ |+........ . .+.+.++++.+|+.+..+ ...|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~--~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT--L---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC--S---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc--h---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 6543211110 0 112456777788877655 23699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCe-----EEEEecCcEEEEecCCCcc----hh
Q 037155 1051 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LLLMKRGGRVIYAGPLGRE----SH 1115 (1403)
Q Consensus 1051 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----i~ll~~gG~~~~~g~~~~~----~~ 1115 (1403)
||++||+. ...+.+.++++ |+|+|+++|+.+ . ++.+.+|+ +++|+++|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 66666666553 789999999976 3 34578899 99998346677 7764321 23
Q ss_pred HHHHHHHh
Q 037155 1116 KLIEYFEA 1123 (1403)
Q Consensus 1116 ~~~~~f~~ 1123 (1403)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45667754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=243.55 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=150.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchh--------------hc-c---cchhhhhhhccCCCc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV--------------RF-Q---SNKFLIIRIWKTEQA 245 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~--------------~~-~---~~~~~~~~~~~~~~~ 245 (1403)
..+++++|+.+++| +++|+|||||||||||++|.+.+...... .| . +......+.. ..+.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~-~~~~ 125 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRL-SSAG 125 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEE-ETTS
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEE-ecCC
Confidence 45799999999999 99999999999999999998876421000 00 0 0000000000 0124
Q ss_pred ceEEEECCccCCCCCc----cceEEEeccCCCCCCCCCHHHHHHhhccccccc-c----hhhHHHHhhHHHHhcCCCCC-
Q 037155 246 SGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQQGIKPD- 315 (1403)
Q Consensus 246 ~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~-~----~~~~~~~~~~~e~~~~i~~~- 315 (1403)
+|++.+||.+++.... ...+++++|++.++.. +..+...|--...... . .+.......+.... -....
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~-l~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLER-LQASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-C-----
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHhhhh
Confidence 6889999988754221 2348999999866543 6665555532211000 0 00000000000000 00000
Q ss_pred ----------chHHHHHHHHHh-----------hccchhHHHHHHHHHcCCcccc----------------cc---cccC
Q 037155 316 ----------PEIDAFMKAVAV-----------AGQETSLVTDYVLKLLGLDICA----------------DT---MVGD 355 (1403)
Q Consensus 316 ----------~~~~~~~~~~~~-----------~~~~~~~~~~~il~~lgL~~~~----------------dt---~vg~ 355 (1403)
.+.+...+.... ....-...++..++.++++... +. .++.
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 001111100000 0001122344556667665410 00 1111
Q ss_pred ------ccCCC-CChhHhhHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 037155 356 ------EMRRG-ISGGQKKRVTTGEMLVGAA--KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426 (1403)
Q Consensus 356 ------~~~rg-LSGGqkqRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~ 426 (1403)
...+. +||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|++++ .+.|+|++.|.+ ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHH
Confidence 00111 6999999999999999999 9999999999999999999999999987 378888887764 567
Q ss_pred hhcCEEEEE----cCCeEEEec
Q 037155 427 DLFDDIILI----SEGQIVYHG 444 (1403)
Q Consensus 427 ~~fD~IilL----~~G~iv~~G 444 (1403)
+.+|++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-22 Score=233.95 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1022 VNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~------~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999975 46789999
Q ss_pred EEEecCcEEEE
Q 037155 1096 LLMKRGGRVIY 1106 (1403)
Q Consensus 1096 ~ll~~gG~~~~ 1106 (1403)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 77753
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-24 Score=234.42 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=98.7
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++++.+|+|| ++||+++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 3456789996 89999999999999999999999997 42 2344421100111122456799999975
Q ss_pred HHHHH-HHHH----hhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 975 LYESL-LYSA----WLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 975 v~e~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
+||+ .+.. .+... .. .+.++++++. + + |||||++|||+|+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4555 2311 11110 01 1124445543 2 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
|||+| ++..+++.|+++ ++|+||| +||+++
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999998 6689999 999975
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=225.88 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE--
Q 037155 1022 VNGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1095 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i-- 1095 (1403)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|+|||++||+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3479999999999999997 6899999999999999999999999999985 4899999999964 66789986
Q ss_pred EEEecCcEEEEecCC
Q 037155 1096 LLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1096 ~ll~~gG~~~~~g~~ 1110 (1403)
++|.+|...+.....
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 788776666665554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-22 Score=213.50 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=101.4
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCC-CCCHHHHHHH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSP-HVTLYESLLY 981 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~-~lTv~e~l~~ 981 (1403)
|||+++++||+++|+||||||||||++++.+... .+++ . ...|+++|+..... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 12367777642100 001111111
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1058 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~--- 1058 (1403)
. ..+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~-~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------Y-IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------H-HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------H-HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1 11122234544444432 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1059 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1059 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
....+++.|++++++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999988777999999999874
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=221.25 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=72.7
Q ss_pred CCCCChhHhhHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 358 RRGISGGQKKRVTTGEMLV------GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 358 ~rgLSGGqkqRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
...|||||||||+||+||+ .+|++|||||||+|||+.+..++.+.|+++.+ .|.|+|++.|++. ....+|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 3459999999999999999 79999999999999999999999999999865 5889888877653 4778999
Q ss_pred EEEEcCCeEEE
Q 037155 432 IILISEGQIVY 442 (1403)
Q Consensus 432 IilL~~G~iv~ 442 (1403)
|++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-22 Score=217.23 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=95.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
.++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---------------------~G~I~~~~~~~~~~~~ 64 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---------------------SKQVSRIILTRPAVEA 64 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---------------------TTSCSEEEEEECSCCT
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---------------------CCeeeeEEecCCchhh
Confidence 456789996 89999999999999999999999999 763 4555211000011123
Q ss_pred cceEEEeccCCCCCCCCCHHHHH-HhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETL-DFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++ +||+ .+.... ++ .+. .... ...++.++
T Consensus 65 ~~~ig~v~q~~--------~enl~~~~~~~------~~---~~~------~~~~------------------~~~~~~~l 103 (208)
T 3b85_A 65 GEKLGFLPGTL--------NEKIDPYLRPL------HD---ALR------DMVE------------------PEVIPKLM 103 (208)
T ss_dssp TCCCCSSCC--------------CTTTHHH------HH---HHT------TTSC------------------TTHHHHHH
T ss_pred hcceEEecCCH--------HHHHHHHHHHH------HH---HHH------Hhcc------------------HHHHHHHH
Confidence 56799999975 6777 442100 00 000 0000 01123333
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+. | + ||||||+|||||+.+|++|+|||||+| ++.++.+.|+++ + .+.|+| +.|+
T Consensus 104 ~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd 157 (208)
T 3b85_A 104 EA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGD 157 (208)
T ss_dssp HT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC
T ss_pred Hh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECC
Confidence 32 2 2 999999999999999999999999999 888999999887 3 477877 6665
Q ss_pred C
Q 037155 421 P 421 (1403)
Q Consensus 421 ~ 421 (1403)
.
T Consensus 158 ~ 158 (208)
T 3b85_A 158 I 158 (208)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-22 Score=234.01 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=118.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+|.
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------------------------~G~I~------------- 155 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------------------------GGSVL------------- 155 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------------------------TCEEE-------------
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------------------------CceEE-------------
Confidence 46899999999999999999999999999999999975 47773
Q ss_pred eEEEeccCCCCCCCCCHHH-HHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHDLHHGEMTVRE-TLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+|++|++.++.. |++| ||.|..... + .....++.
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~~~-------------------------~-----------------~~~~~i~~ 190 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDDAT-------------------------H-----------------ACWRYFDT 190 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEEEC-------------------------H-----------------HHHHHHHH
T ss_pred --EEecCccccccc-cHHHHhhccCcccc-------------------------H-----------------HHHHHHHH
Confidence 467888777764 8887 887641100 0 01112333
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+ |++..| | ..|||||||| ||||+.+|+||+ ||+||+.++..|.. ++| .
T Consensus 191 ~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----ltH-------------~ 238 (305)
T 2v9p_A 191 Y-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----LHS-------------R 238 (305)
T ss_dssp T-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----GTT-------------T
T ss_pred H-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----HhC-------------C
Confidence 3 555555 3 4699999999 999999999999 99999999888752 121 2
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHc
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~ 456 (1403)
.++...+|+| +|++|++++.|+++++..+|..+
T Consensus 239 ~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 239 VQTFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp EEEEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred HHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 2345678999 99999999999999996666553
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-23 Score=243.55 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=134.0
Q ss_pred ceEeeeeEEEEeCCe--------------------EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhc
Q 037155 898 LQLLHSVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA 957 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 957 (1403)
+.+|++||+++++|+ ++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 458999999999999 9999999999999999999997653 3688888886542
Q ss_pred ceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHH
Q 037155 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE--QRKRLTI 1035 (1403)
Q Consensus 958 ~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG--qrqRl~I 1035 (1403)
+ .+|++|++ .++++|+.|++.+.. . +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 28899985 567889988875542 1 11267889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCcH-HHHHhcCeE
Q 037155 1036 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDEL 1095 (1403)
Q Consensus 1036 A~aL~~----------~P~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~d~i 1095 (1403)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 32 3678899998752 255556655
Q ss_pred E
Q 037155 1096 L 1096 (1403)
Q Consensus 1096 ~ 1096 (1403)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-23 Score=228.14 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=119.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
...+++| .++++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3557888 6899999999999999999999999999653 123333333332211 2245689999998777777777
Q ss_pred HHHHHHHhhhC---CCCCcHHHHHHHHHHH------HHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 977 ESLLYSAWLRL---SSDVDTKKRKIFVDEV------MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 977 e~l~~~~~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+++........ ....+.++.++.+++. ++.+|+.+.++... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76542211110 0112333444445554 45555555555442 2466 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1048 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1048 LDEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...||++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999974 5899999999987 6888999999986544
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-20 Score=213.31 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCChhHhhHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEE--
Q 037155 359 RGISGGQKKRVTTGEMLV----GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI-- 432 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~I-- 432 (1403)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++. .+.++|++.|.+ ++.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEE
Confidence 349999999999999997 6899999999999999999999999999874 367888877763 678899987
Q ss_pred EEEcCCeE-EEecChhhH
Q 037155 433 ILISEGQI-VYHGPRDNV 449 (1403)
Q Consensus 433 ilL~~G~i-v~~G~~~~~ 449 (1403)
++|.+|.. +.....++.
T Consensus 294 v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEESSSCEEEEECCC---
T ss_pred EEEeCCEEEEEEEEcchh
Confidence 78888854 444554443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-20 Score=199.82 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=99.9
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~ 992 (1403)
.++|+||||||||||+++|+|.... ...|.. . ........++.+||++|+. ++.+++ + +.+.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~-~--~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~--~-- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFW-T--EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF--T-- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEE-E--EEEC------CCEEEEEET------TCCEEE-E-EETTC--C--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEE-h--hhhccccccceeEEEeecC------cHHHHH-H-HhhcC--C--
Confidence 6899999999999999999996531 122321 1 1111012356789999975 222322 1 11100 0
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 037155 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 1065 (1403)
Q Consensus 993 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~a-----L~~~P~illLDE--PTsgLD~~~~~~i~~ 1065 (1403)
-.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....+.+
T Consensus 66 ----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 ----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00122332 23699999999999996 999999999999 999999999999988
Q ss_pred HHHHHHhCCCEEEEEec---CCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1066 TVRNTVDTGRTVVCTIH---QPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1066 ~l~~~~~~g~tvi~~~H---~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
.+++ .+.|+|+++| +.+ .+...+|+ .+|+++...+
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8876 4778889986 543 45667776 4567766443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-21 Score=233.99 Aligned_cols=173 Identities=12% Similarity=0.105 Sum_probs=129.4
Q ss_pred cceeeeceEEEEeCCe--------------------EEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccC
Q 037155 183 DVQILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge--------------------~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~ 242 (1403)
...+|+|||+.+++|+ +++|+||||||||||+|+|+|..++
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p------------------- 95 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE------------------- 95 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-------------------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-------------------
Confidence 4568999999999999 9999999999999999999999864
Q ss_pred CCcceEEEECCccCCCCCccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHH
Q 037155 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFM 322 (1403)
Q Consensus 243 ~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~ 322 (1403)
.+|+|.++|.+.+ + .+|++|++ .++.+|+.||+.++..
T Consensus 96 --~~GsI~~~g~~~t----~--~~~v~q~~-~~~~ltv~D~~g~~~~--------------------------------- 133 (413)
T 1tq4_A 96 --EEGAAKTGVVEVT----M--ERHPYKHP-NIPNVVFWDLPGIGST--------------------------------- 133 (413)
T ss_dssp --STTSCCCCC--------C--CCEEEECS-SCTTEEEEECCCGGGS---------------------------------
T ss_pred --cCceEEECCeecc----e--eEEecccc-ccCCeeehHhhcccch---------------------------------
Confidence 5799999886543 1 27899985 5778899988755310
Q ss_pred HHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChh--HhhHHHHHHHHhc----------CCcEeEEeCCCCC
Q 037155 323 KAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------AAKVLLMDEISTG 390 (1403)
Q Consensus 323 ~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGG--qkqRvsia~aL~~----------~p~illLDEptsg 390 (1403)
....+.+++.++|.+.. ..+ . +||| ||||+.||++|.. +|++++|||||+|
T Consensus 134 ----------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 134 ----------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp ----------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 00134567778877653 222 2 8999 9999999999999 9999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH----hC----CcEEEEEEecCch-hHHhhcCEEE
Q 037155 391 LDSSTTFQICKFLKQMVH----IM----DVTMIVALLQPAP-ETYDLFDDII 433 (1403)
Q Consensus 391 LDs~t~~~i~~~L~~l~~----~~----~~tvii~~~q~~~-~~~~~fD~Ii 433 (1403)
||+.++.++.+.++++.. .. ..+++++.|.... .+.+++|+|.
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999998852 22 2345555543332 2555566553
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-20 Score=194.85 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=53.7
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS----------------TTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~----------------t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. |.|+|++.|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 558889998888765 88888887654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-20 Score=198.41 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCCChhHhhHHHHHHH-----HhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe--cCchhHHhhc
Q 037155 359 RGISGGQKKRVTTGEM-----LVGAAKVLLMDE--ISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL--QPAPETYDLF 429 (1403)
Q Consensus 359 rgLSGGqkqRvsia~a-----L~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~--q~~~~~~~~f 429 (1403)
..||||||||++||+| ++.+|++++||| ||++||+.....+.+.+++ .+.|+|++.| |+.+.+..++
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHH
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHH
Confidence 3499999999999996 999999999999 9999999999999988875 3667888886 5666777778
Q ss_pred CEEEEEcCCeEEE
Q 037155 430 DDIILISEGQIVY 442 (1403)
Q Consensus 430 D~IilL~~G~iv~ 442 (1403)
|+ .+|++++
T Consensus 151 ~r----~~~~i~~ 159 (178)
T 1ye8_A 151 RL----PGAVLIE 159 (178)
T ss_dssp TC----TTCEEEE
T ss_pred hc----CCcEEEE
Confidence 87 5566664
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-19 Score=207.98 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=129.7
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC------
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV------ 260 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~------ 260 (1403)
++++|+.+++|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+.....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~---------------------~~g~V~l~g~d~~r~~a~~ql~ 148 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN---------------------EGTKVLMAAGDTFRAAASDQLE 148 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH---------------------TTCCEEEECCCCSCHHHHHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH---------------------cCCeEEEEeecccchhHHHHHH
Confidence 3578899999999999999999999999999999864 4799999998764321
Q ss_pred -c--cceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 -P--QRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 -~--~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
. ++.++|++|++. .+|.+||+|++.++.. .+ .+
T Consensus 149 ~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~---------------------~d--------------------- 185 (302)
T 3b9q_A 149 IWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EG---------------------YD--------------------- 185 (302)
T ss_dssp HHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH-TT---------------------CS---------------------
T ss_pred HHHHhcCceEEEecCCccCHHHHHHHHHHHHHH-cC---------------------Cc---------------------
Confidence 1 246999999988 8889999999987421 00 00
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK--VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
..+++.+|+.+..+..+++ || |||++||++++.+|+ +|+|| ||+|||+... ++++.+..+.|+
T Consensus 186 ~~lldt~gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~ 250 (302)
T 3b9q_A 186 VVLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITG 250 (302)
T ss_dssp EEEECCCCCSSCCHHHHHH-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCE
T ss_pred chHHhcCCCCcchhHHHHH-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCE
Confidence 0124556777777777765 99 999999999999999 99999 9999999864 234444457788
Q ss_pred EEEEecCc--------hhHHhhcCEEEEEcCCeE
Q 037155 415 IVALLQPA--------PETYDLFDDIILISEGQI 440 (1403)
Q Consensus 415 ii~~~q~~--------~~~~~~fD~IilL~~G~i 440 (1403)
++..|-+. .......+.|..+..|+.
T Consensus 251 iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 251 LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 87776322 122234567788887754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-20 Score=209.08 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=96.9
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~ 992 (1403)
.+||+||||||||||+|+|+|...+ .+|+|.++|.+......++.+||++|++.+.+.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HH
Confidence 4799999999999999999996553 4799999998775545567899999999999999999999887543221 11
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 993 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
.+ .+.+.++ ....+...+ .||||||||++|||+++. +++|||||.|||+.. .+.++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1222222 233444433 699999999999999875 999999999999987 445556655
Q ss_pred CCCEEEEEecCCc
Q 037155 1073 TGRTVVCTIHQPS 1085 (1403)
Q Consensus 1073 ~g~tvi~~~H~~~ 1085 (1403)
. ++||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999743
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-17 Score=191.06 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=68.8
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1022 VNGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1022 ~~~LSgGqrq------Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+..||||||| |+++|++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||++||+++ +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677788888899999999999999999999999999998877899999999964 67899999
Q ss_pred EEEe
Q 037155 1096 LLMK 1099 (1403)
Q Consensus 1096 ~ll~ 1099 (1403)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-19 Score=206.36 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCC
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 278 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 278 (1403)
.++|+||||||||||+|+|+|...+ .+|+|.++|.++.....++.++|++|++.+++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---------------------~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~l 62 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---------------------RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------------------------CCCCCSCCEEEESCC----CCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCccccCCcccCcceeeeeeEEEeecCCCcCCc
Confidence 4789999999999999999998754 5799999998775544567899999999999999
Q ss_pred CHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccC
Q 037155 279 TVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358 (1403)
Q Consensus 279 TVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 358 (1403)
||.||+.|+........ ...+..++ . ....+..+++
T Consensus 63 tv~d~~~~g~~~~~~~~-------------------~~~i~~~~-----------------~-----~~~~~~~~~~--- 98 (270)
T 3sop_A 63 TVIDTPGFGDQINNENC-------------------WEPIEKYI-----------------N-----EQYEKFLKEE--- 98 (270)
T ss_dssp EEECCCC--CCSBCTTC-------------------SHHHHHHH-----------------H-----HHHHHHHHHH---
T ss_pred eEEechhhhhhcccHHH-------------------HHHHHHHH-----------------H-----HHHHhhhHHh---
Confidence 99999998754321100 00011111 0 1222334433
Q ss_pred CCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
||||||||+++||+++. ++++|||+.|||+.. .+.++.+.+ . .++|+.++.
T Consensus 99 --LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K 149 (270)
T 3sop_A 99 --VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAK 149 (270)
T ss_dssp --SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETT
T ss_pred --cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEec
Confidence 99999999999999875 999999999999987 344555543 2 677776643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-19 Score=208.46 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=118.6
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hh--cceeeEeecCCC-CC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TF--ARVSGYCEQTDI-HS 970 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~ 970 (1403)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3568888999999999999999999999999996542 258999999875421 22 235899999988 88
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFM 1048 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illL 1048 (1403)
|.+|++|++.+... + ..+ ..+++.+|+.+..+..++ .|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999987532 1 111 134566777776666544 688 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1083 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1083 (1403)
| ||+|||+.... +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999998652 3444 348999999993
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-21 Score=225.21 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=115.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
..+|+|||++|++|+++||+||||||||||+++|+|.. +|+| ++|++|++.+++ .|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHH
Confidence 35899999999999999999999999999999999975 3555 356777766654 36665
Q ss_pred -HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 978 -SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 978 -~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
|+.+.. +... .+++.++.+ |.+..| | ..|||||||| ||||+++|+||| ||+||
T Consensus 172 ~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 TRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp CSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred HhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 665531 1111 234555553 333333 2 3699999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcchhHHHHHHHhC
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAV 1124 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~~ 1124 (1403)
+.++..++. .+|+++ ..+.+|++ +|+ +|++++.|+. +++..+|..+
T Consensus 226 ~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 226 VQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp STTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH----HHHHHHHHHH
Confidence 999988762 188876 45789999 887 5899988874 3455666554
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-21 Score=215.65 Aligned_cols=154 Identities=12% Similarity=-0.006 Sum_probs=97.8
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCCCCCCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
.-|+||||++++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46999999999999999999999999999999999652 56777 654321 113456899999876554332
Q ss_pred H-HHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEE
Q 037155 975 L-YESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTI-----AVELVANPSIIF 1047 (1403)
Q Consensus 975 v-~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~I-----A~aL~~~P~ill 1047 (1403)
. .+++.+ .....+ ...+. ..++++++..++. ..+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111110 000000 01111 2356666654321 112 2599999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
|||||+++|..+...|.+.+.+..+
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998887643
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.4e-19 Score=205.35 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=102.7
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 79999999999999999999999999999999997654 369999998642110 0112222221
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2356777777543458999999987 56789999999864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-18 Score=202.75 Aligned_cols=173 Identities=15% Similarity=0.218 Sum_probs=129.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-------
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV------- 260 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~------- 260 (1403)
+++|+.+++|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~---------------------~~G~V~l~g~D~~r~~a~eql~~ 206 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN---------------------EGTKVLMAAGDTFRAAASDQLEI 206 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH---------------------TTCCEEEECCCCSCHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc---------------------cCCEEEEecccccccchhHHHHH
Confidence 467889999999999999999999999999999864 4799999998764321
Q ss_pred --ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 --PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++. ++|.+||+|++.++... + .+ .
T Consensus 207 ~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~-~---------------------~d---------------------~ 243 (359)
T 2og2_A 207 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE-G---------------------YD---------------------V 243 (359)
T ss_dssp HHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHT-T---------------------CS---------------------E
T ss_pred HHHhcCeEEEEecccccChhhhHHHHHHHHHhC-C---------------------CH---------------------H
Confidence 1246999999988 88899999999875210 0 00 0
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK--VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
.+++.+|+.+..+..+++ || |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.|+|
T Consensus 244 ~lldt~Gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~i 308 (359)
T 2og2_A 244 VLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGL 308 (359)
T ss_dssp EEEECCCCSSCCHHHHHH-----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEE
T ss_pred HHHHhcCCChhhhhHHHH-----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEE
Confidence 123456777776766655 99 999999999999999 99999 99999998652 334444578888
Q ss_pred EEEecCc--------hhHHhhcCEEEEEcCCe
Q 037155 416 VALLQPA--------PETYDLFDDIILISEGQ 439 (1403)
Q Consensus 416 i~~~q~~--------~~~~~~fD~IilL~~G~ 439 (1403)
+..|-+. .-.....+.|..+..|+
T Consensus 309 iiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 309 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp EEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred EEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 8776321 12223456777777775
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=192.82 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1024 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 4 2 7899
Q ss_pred EEEEecCcEEEEecCCC
Q 037155 1095 LLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1095 i~ll~~gG~~~~~g~~~ 1111 (1403)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 8999888763
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-18 Score=204.97 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=119.1
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hh--cceeeEeecCCC-CCC
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TF--ARVSGYCEQTDI-HSP 971 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 971 (1403)
+.+|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 357778899999999999999999999999996542 258999999875421 12 346899999988 888
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 1049 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illLD 1049 (1403)
..|++|++.+... + ..+ ..+++.+|+.+..+..+. .|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 9999999987642 1 111 124566777776666543 688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1083 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1083 (1403)
||+|||+.+.. +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 3443 348999999994
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-17 Score=189.06 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCChhHhhHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 037155 360 GISGGQKKRVTTGEMLV---------GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 430 (1403)
.+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .|+|++. |+. + .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~t-h~~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGT-ELA-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEES-SCC-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEE-ecc-c---cCC
Confidence 59999999999999999 8999999999999999999999999998752 4555554 443 3 899
Q ss_pred EEEEEcCCeEEEecChhhH
Q 037155 431 DIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 431 ~IilL~~G~iv~~G~~~~~ 449 (1403)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-19 Score=212.39 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=139.3
Q ss_pred cccccccc-cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc---cCCh--------hhh
Q 037155 889 KTEGVGED-RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKKQ--------ETF 956 (1403)
Q Consensus 889 ~~~~~~~~-~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~ 956 (1403)
++....++ +..+|+++ +.+.+||+++|+||||||||||+++|+|...+ ..|.|.++|. +... ...
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l 211 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGR 211 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred eccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhcccccc
Confidence 33334443 46799999 99999999999999999999999999997654 3799999997 3321 235
Q ss_pred cceeeEeecC-CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHH
Q 037155 957 ARVSGYCEQT-DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTI 1035 (1403)
Q Consensus 957 ~~~~gyv~Q~-~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~I 1035 (1403)
++.++|++|+ +...+.+|+.+++.+.+....... . ......|. ...||+|| ||++|
T Consensus 212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------~------~v~~~ld~------l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 212 ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------Q------HVLLIMDS------LTRYAMAQ-REIAL 268 (438)
T ss_dssp HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------C------EEEEEEEC------HHHHHHHH-HHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------C------CHHHHHHh------HHHHHHHH-HHHHH
Confidence 6779999995 455678899999887654321100 0 00111122 23599999 99999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1036 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1036 A~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
| +.+|++ |+|||+.+...+.+.++++.+ + |. ||++++||++ ...+|++++|. +|+++.
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~Ivl 335 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGHIVL 335 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEEEEE
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcEEEE
Confidence 9 888988 999999999999999999876 3 64 9999999987 35689999997 489998
Q ss_pred ecCC
Q 037155 1107 AGPL 1110 (1403)
Q Consensus 1107 ~g~~ 1110 (1403)
.|++
T Consensus 336 ~~~~ 339 (438)
T 2dpy_A 336 SRRL 339 (438)
T ss_dssp CHHH
T ss_pred eCCH
Confidence 8753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-20 Score=206.06 Aligned_cols=170 Identities=13% Similarity=0.079 Sum_probs=105.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---- 260 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---- 260 (1403)
.-|+|||+.+++|++++|+||||||||||+++|+|.+ . |+|.+ |.+.....
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-----------------------p-G~i~~-g~~~~~~~~~~~ 65 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-----------------------P-NYFYF-SVSCTTRKKREK 65 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-----------------------T-TTEEE-CCCEECSCCCSS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-----------------------C-CcEEE-eecccCCCCCcc
Confidence 4699999999999999999999999999999999975 1 67777 66543221
Q ss_pred ccceEEEeccCCCCCCCCC-HHHHHHhh---cccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 PQRTCAYISQHDLHHGEMT-VRETLDFS---GRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lT-VrE~l~f~---~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.++.++|++|++..++.++ +.+++.+. ..+.+. + ...+
T Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~--------------------~------------------~~~i 107 (218)
T 1z6g_A 66 EKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT--------------------L------------------KSEY 107 (218)
T ss_dssp CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE--------------------E------------------HHHH
T ss_pred cccCCeEEECCHHHHHHhhhccchhhhhhcccccCCC--------------------c------------------HHHH
Confidence 2356899999876554432 11122111 111100 0 0011
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHH-----HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTT-----GEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsi-----a~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
+.+++... ...++ ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|.+....
T Consensus 108 ~~~l~~~~-----~~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~-- 176 (218)
T 1z6g_A 108 DKAKEQNK-----ICLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE-- 176 (218)
T ss_dssp HHHHHTTC-----EEEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--
T ss_pred HHHHhCCC-----cEEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--
Confidence 22233211 11111 3499999999999 89999999999999999999999999999998876543
Q ss_pred cEEEEEEecCchhHHhhcCEEEEEcC
Q 037155 412 VTMIVALLQPAPETYDLFDDIILISE 437 (1403)
Q Consensus 412 ~tvii~~~q~~~~~~~~fD~IilL~~ 437 (1403)
.| +.| ...+|.|+++++
T Consensus 177 ~~----~~h-----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 177 LH----EAN-----LLNFNLSIINDD 193 (218)
T ss_dssp HH----HHT-----TSCCSEEEECSS
T ss_pred HH----hhc-----ccCCCEEEECCC
Confidence 22 111 256788887754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=203.79 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=70.6
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1022 VNGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1022 ~~~L-SgGqrqRl~IA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||+++ +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4457 999999999999999999 99999999999999999999999999987 899999999975 55679999999
Q ss_pred ecC
Q 037155 1099 KRG 1101 (1403)
Q Consensus 1099 ~~g 1101 (1403)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-20 Score=200.80 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=112.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
.++++| ..+++|++++|+||||||||||+++|+|.++. ..+.+.+.+.+... ..++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---------------------i~~~~~~~~~~~~~-~~~~ 64 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---------------------LHFSVSATTRAPRP-GEVD 64 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---------------------CEECCCEESSCCCT-TCCB
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---------------------eEEcccccccCCcc-cccC
Confidence 467788 68999999999999999999999999998742 12222222222111 1245
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH----
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV---- 339 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i---- 339 (1403)
.++|++|++..++.+|+.|++.+.....+....+. ..+. ++++ .++..
T Consensus 65 ~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g----~~~~----------~~~~--------------~~~~~~~~~ 116 (207)
T 1znw_A 65 GVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG----TLAQ----------PVRA--------------AAATGVPVL 116 (207)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE----EEHH----------HHHH--------------HHHHTCCEE
T ss_pred CCeeEecCHHHHHHHHhcCCceeehhhcCchhhcC----CcHH----------HHHH--------------HHHcCCeEE
Confidence 68999999888888888888754322111000000 0000 0000 01111
Q ss_pred --HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcE
Q 037155 340 --LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGL----DSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 340 --l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgL----Ds~t~~~i~~~L~~l~~~~~~t 413 (1403)
++.+|+.+..+..++ .|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+.|
T Consensus 117 ~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~t 180 (207)
T 1znw_A 117 IEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFD 180 (207)
T ss_dssp EECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSS
T ss_pred EEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCc
Confidence 233344444444443 266 899999999999999998 7789999999999987656778
Q ss_pred EEEEEecCchhHHhhcCEEEEEc
Q 037155 414 MIVALLQPAPETYDLFDDIILIS 436 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~ 436 (1403)
++++. |...++..++|+|++|.
T Consensus 181 vi~vt-Hdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 181 KVVVN-RRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEEC-SSHHHHHHHHHHHHC--
T ss_pred EEEEC-CCHHHHHHHHHHHHHhc
Confidence 87765 55668999999999984
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=192.86 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=116.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-EEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
..+|+++++.+++|++++|+||||||||||++.|+|..... .| .+.+.+.........+.+.++.|... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 34799999999999999999999999999999999954311 24 45443333333333333333333221 2233
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 1053 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq-rqRl~IA~aL~~~P~illLDEPTs-- 1053 (1403)
+++.... + ..++..+.++++++..++. +.+. +..+|.+| +||+. |+++..+|++|++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443221 1 1112222344443322221 1111 13589998 66766 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCC--cH-------------------HHHHhcCeEEEEecC
Q 037155 1054 -G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1054 -g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~~~~~~d~i~ll~~g 1101 (1403)
+ +|. .....+++.|++++++ |+|||+++|+. +. .+...||++++|.+|
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999754 99999999995 21 466789999999864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-18 Score=199.34 Aligned_cols=128 Identities=9% Similarity=0.001 Sum_probs=95.5
Q ss_pred ceEE-EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEE
Q 037155 189 DVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAY 267 (1403)
Q Consensus 189 ~vs~-~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~y 267 (1403)
|+|. .+++|++++|+||||||||||+++|+|.+++ ..|. +.++|
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~---------------------~~G~--------------~~v~~ 125 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR---------------------WDHH--------------PRVDL 125 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT---------------------STTC--------------CCEEE
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc---------------------cCCC--------------CeEEE
Confidence 3444 3789999999999999999999999999854 2232 46899
Q ss_pred eccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc
Q 037155 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 347 (1403)
|+|++.+++. |++||+.+... .+.... .+. ......++.++ ..
T Consensus 126 v~qd~~~~~~-t~~e~~~~~~~-~g~~~~-------------------~d~---------------~~~~~~L~~l~-~~ 168 (312)
T 3aez_A 126 VTTDGFLYPN-AELQRRNLMHR-KGFPES-------------------YNR---------------RALMRFVTSVK-SG 168 (312)
T ss_dssp EEGGGGBCCH-HHHHHTTCTTC-TTSGGG-------------------BCH---------------HHHHHHHHHHH-TT
T ss_pred EecCccCCcc-cHHHHHHHHHh-cCCChH-------------------HHH---------------HHHHHHHHHhC-CC
Confidence 9999999988 99999865321 111000 000 12234566666 44
Q ss_pred cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 037155 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDS 393 (1403)
Q Consensus 348 ~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs 393 (1403)
..++.+.. +|||||||+++|++++.+|+|+++|||+..+|+
T Consensus 169 ~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 44555544 999999999999999999999999999999997
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-18 Score=211.04 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=135.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCc---cCCCC
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH---ELNEF 259 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~---~~~~~ 259 (1403)
+..+|+++ +.+.+|++++|+|||||||||||++|+|..++ .+|.|.++|+ ++.++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---------------------~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA---------------------DVIVVGLIGERGREVKDF 201 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC---------------------SEEEEEEESCCHHHHHHH
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC---------------------CeEEEEEeceecHHHHHH
Confidence 46799999 99999999999999999999999999999864 4799999998 44332
Q ss_pred --------CccceEEEeccC-CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhcc
Q 037155 260 --------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQ 330 (1403)
Q Consensus 260 --------~~~~~~~yv~Q~-d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~ 330 (1403)
..++.++|++|+ +..++.+||.+|+.+.++... .+ + .+
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~--------------~~--~----~~------------- 248 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR--------------DR--G----QH------------- 248 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH--------------TT--T----CE-------------
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH--------------hC--C----CC-------------
Confidence 135789999995 556778899999987543210 00 0 00
Q ss_pred chhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH--
Q 037155 331 ETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH-- 408 (1403)
Q Consensus 331 ~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~-- 408 (1403)
.....|. ...+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+
T Consensus 249 --------------v~~~ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~ 298 (438)
T 2dpy_A 249 --------------VLLIMDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGI 298 (438)
T ss_dssp --------------EEEEEEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCS
T ss_pred --------------HHHHHHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhcc
Confidence 0000111 23499999 999999 888887 999999999999999998765
Q ss_pred -hCCc-----EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 409 -IMDV-----TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 409 -~~~~-----tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
..|. |+++..|... ...+|++++|.+|+++..|+++++
T Consensus 299 ~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 299 HGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp TTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred CCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 2253 5555555443 567899999999999999988765
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-17 Score=191.59 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=101.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
+++++|+.+++|++++|+|||||||||||++|+|.+++ .+|.|+++|.+ +...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~---------------------~~g~i~i~~~~--e~~~---- 212 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK---------------------EERIISIEDTE--EIVF---- 212 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT---------------------TSCEEEEESSC--CCCC----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC---------------------CCcEEEECCee--cccc----
Confidence 79999999999999999999999999999999999865 47999999853 1100
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
++ + ++.+ +
T Consensus 213 ---~~---~------~~~i-----------------------------------------------------------~- 220 (330)
T 2pt7_A 213 ---KH---H------KNYT-----------------------------------------------------------Q- 220 (330)
T ss_dssp ---SS---C------SSEE-----------------------------------------------------------E-
T ss_pred ---cc---c------hhEE-----------------------------------------------------------E-
Confidence 00 0 0000 0
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+ .| |||+||++||+||..+|+++++||||+. ++.+.|+.+.. .+.|+++++|.++ +
T Consensus 221 ------~~-----~g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~ 277 (330)
T 2pt7_A 221 ------LF-----FG--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--S 277 (330)
T ss_dssp ------EE-----CB--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--H
T ss_pred ------EE-----eC--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--H
Confidence 00 01 8999999999999999999999999982 35667776643 3447888888765 7
Q ss_pred HhhcCEEEEEcCCeE
Q 037155 426 YDLFDDIILISEGQI 440 (1403)
Q Consensus 426 ~~~fD~IilL~~G~i 440 (1403)
.+.+|++++|.+|+.
T Consensus 278 ~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 278 EEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHHHHTSG
T ss_pred HHHhhhheehhcCCc
Confidence 788999999988853
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-17 Score=185.95 Aligned_cols=187 Identities=14% Similarity=0.067 Sum_probs=113.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcce-EEEECCccCCCCCc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASG-KITYCGHELNEFVP 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~I~~~G~~~~~~~~ 261 (1403)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+ .+| .|.|.+.+......
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~---------------------~~G~~v~~~~~e~~~~~~ 79 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT---------------------AMGKKVGLAMLEESVEET 79 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH---------------------TSCCCEEEEESSSCHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH---------------------HcCCeEEEEeCcCCHHHH
Confidence 45689999999999999999999999999999999998753 246 66554432211000
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.+.+.++.|... +++.+++..+ .+.. .+.....+.+++
T Consensus 80 ~~r~~~~~~~~~----~~~~~~l~~~--------------~~~~------------------------~~~~~~~~~~l~ 117 (296)
T 1cr0_A 80 AEDLIGLHNRVR----LRQSDSLKRE--------------IIEN------------------------GKFDQWFDELFG 117 (296)
T ss_dssp HHHHHHHHTTCC----GGGCHHHHHH--------------HHHH------------------------THHHHHHHHHHS
T ss_pred HHHHHHHHcCCC----hhhccccccC--------------CCCH------------------------HHHHHHHHHHhc
Confidence 111111111110 0111122110 0000 000111222332
Q ss_pred HcCCcccccccccCccCCCCChhH-hhHHHHHHHHhcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQ-KKRVTTGEMLVGAAKVLLMDEIST---G---LDS-STTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGq-kqRvsia~aL~~~p~illLDEpts---g---LDs-~t~~~i~~~L~~l~~~~~~t 413 (1403)
..++. .+... ..+|.+| +||+. |+++..+|+++++||||+ + +|. ....++.+.|+++++..+.|
T Consensus 118 ~~~l~--i~~~~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~ 189 (296)
T 1cr0_A 118 NDTFH--LYDSF-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV 189 (296)
T ss_dssp SSCEE--EECCC-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE
T ss_pred cCCEE--EECCC-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 22221 11111 2388888 67777 999999999999999999 5 455 66688999999998877889
Q ss_pred EEEEEecC-ch--------------------hHHhhcCEEEEEcCCeE
Q 037155 414 MIVALLQP-AP--------------------ETYDLFDDIILISEGQI 440 (1403)
Q Consensus 414 vii~~~q~-~~--------------------~~~~~fD~IilL~~G~i 440 (1403)
+|++.|.. .. .+.+.+|+|++|++|+.
T Consensus 190 vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 190 LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp EEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 88887764 13 67789999999998874
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=176.69 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCCChhHhh------HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEE
Q 037155 359 RGISGGQKK------RVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432 (1403)
Q Consensus 359 rgLSGGqkq------Rvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~I 432 (1403)
..||||||| |+++|++++.+|++|+|||||+|||+..+..+.+.|+++... +.|++++.|+ .++.+.+|+|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCCEE
Confidence 459999999 677888889999999999999999999999999999988653 6788887766 4678999999
Q ss_pred EEEc
Q 037155 433 ILIS 436 (1403)
Q Consensus 433 ilL~ 436 (1403)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-17 Score=182.88 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=102.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
.++++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------------------------G~~~~~-------~~ 57 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------------------------GQNEVE-------QR 57 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------------------------TGGGSC-------GG
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------------------------chhccc-------cc
Confidence 3457999999999999999999999999999999999975 222222 13
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCC-chHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPD-PEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++ +++.+|++|++.+......... ++ .+.+. ....+
T Consensus 58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~---------------~~~~L 103 (245)
T 2jeo_A 58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDH------------------PDAFDNDL---------------MHRTL 103 (245)
T ss_dssp GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTS------------------GGGBCHHH---------------HHHHH
T ss_pred CCceEEEeCCc-CccccCHhHhhhhhccCCCCCC------------------cccccHHH---------------HHHHH
Confidence 46799999986 6778999999876433211100 00 00111 11122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+. |.+..+..+. .+|+||+||+.+ ++++.+|+++++|||...+|.. +.+ ..+.+++++.|.
T Consensus 104 ~~--l~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~---~~~~~i~v~th~ 164 (245)
T 2jeo_A 104 KN--IVEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD---MFHLRLFVDTDS 164 (245)
T ss_dssp HH--HHTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT---TCSEEEEEECCH
T ss_pred HH--HHCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH---hcCeEEEEECCH
Confidence 22 2344555554 499999999988 5888899999999988877753 222 236677776553
Q ss_pred CchhHH-hhcCEEEEEcCCeEEEecChhhHHHH
Q 037155 421 PAPETY-DLFDDIILISEGQIVYHGPRDNVLEF 452 (1403)
Q Consensus 421 ~~~~~~-~~fD~IilL~~G~iv~~G~~~~~~~~ 452 (1403)
.. ... .+.+++ ++|+ +.+++.+.
T Consensus 165 ~~-~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 165 DV-RLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp HH-HHHHHHHHHT---C--------CHHHHHHH
T ss_pred HH-HHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 22 332 233334 5564 55666543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-16 Score=207.94 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=106.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
...+++|+++.+++|++++|+|||||||||||+++++..--. ..| +|+|+.....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~a-q~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMA-QIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHH-HHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHH-hcC------------------CccccccccchH----
Confidence 356999999999999999999999999999999994310000 000 011111000000
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEPTSG 1054 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL--~~~P~illLDEPTsg 1054 (1403)
+++++..+|+.+ .. .+++|++++++..+|++| +.+|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 000111111111 11 125888888888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+.+ |++.+.++.
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 999988777 677777876 499999999996 46688999988875 788877654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-17 Score=186.84 Aligned_cols=155 Identities=9% Similarity=-0.018 Sum_probs=98.4
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999853 112222 2356789999985 6678999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
.|++.+......... +.....+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876533211111 1111112234444433 23333332 3699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1083 (1403)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2232 37899999996
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=156.91 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1022 VNGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA------~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+.|+|||++||++ ++.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 037155 1096 LLMK 1099 (1403)
Q Consensus 1096 ~ll~ 1099 (1403)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=189.58 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=67.7
Q ss_pred CCC-ChhHhhHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE
Q 037155 359 RGI-SGGQKKRVTTGEMLVGAA--KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI 435 (1403)
Q Consensus 359 rgL-SGGqkqRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL 435 (1403)
..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|+|++.|.+ ++...+|++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 447 999999999999999999 99999999999999999999999999975 67888887764 466789999999
Q ss_pred cCC
Q 037155 436 SEG 438 (1403)
Q Consensus 436 ~~G 438 (1403)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-16 Score=209.98 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=113.0
Q ss_pred cceEeeeeEEEEeC-------CeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceee-EeecCCC
Q 037155 897 RLQLLHSVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSG-YCEQTDI 968 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~ 968 (1403)
+..+++||++.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC
Confidence 35699999999987 999999999999999999999 85430 12345 9999753
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
.+||.|++.. + +|+.+..+. +...+|+|+++ +++|++++.+|+++||
T Consensus 828 ---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 4555554421 1 111111111 12347777664 9999999999999999
Q ss_pred eCCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1049 DEPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1049 DEPTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
||||+|+|+.. ...++..|+.++++ |+++|++||+++ .....+|++.++. |++.
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEE
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEE
Confidence 99999999987 46678999999876 999999999975 3556688888874 6776
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-17 Score=192.57 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=94.9
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRL 987 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~ 987 (1403)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 7899999999999999999999999965421 121 358999999999888 99999865221
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 988 SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 988 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
.+.+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222222344677888887 44444443 36999999999999999999999999999999986
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-16 Score=187.49 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=121.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----------hhhcceeeEeecC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----------ETFARVSGYCEQT 966 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~ 966 (1403)
+..+|+++ +.|.+||+++|+||||||||||+++|+|...+. .|.+.+.|.+... ..+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45699999 999999999999999999999999999976543 6888888864211 1234557777775
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
+. ...+.+.-... ...+.+.....+ .+... .. ..+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 22222211000 000011111111 01000 00 1134699999 899999 688877
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.....+.++++++.+ .|. ||++++||++ ...||+++++. +|+++..+++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeCCH
Confidence 999999999999999999874 477 9999999987 35689999997 4899988764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-16 Score=177.13 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=96.5
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
.+|+++| +++|++++|+||||||||||+++|+|...+. .+|+|.++|.+. +|++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i---------~~~~~~~~~~-------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPI---------EYVFKHKKSI-------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSC---------CSCCCCSSSE--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcc---------eeecCCccee--------
Confidence 3899999 9999999999999999999999999965321 158999988753 2333321100
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
. .. +.+++.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 75 ------v------~q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------V------NQ-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------E------EE-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------e------eH-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 00 0122211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+...+ ++. ++.|.+|++++|+.+ ..+.+|+++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 333 356999999999976 5678899888753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-16 Score=205.21 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=97.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+..+++|||+.+++|++++|+|||||||||||+++++...... . |...... ...++++ +.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~------g~~vpa~--~~~i~~~---d~i~~~i--- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-I------GSYVPAE--EATIGIV---DGIFTRM--- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-H------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-c------Cccccch--hhhhhHH---HHHHHhC---
Confidence 4679999999999999999999999999999999975311000 0 1000000 0011111 1111111
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
++.+.... +...+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 724 -------------------------------g~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 724 -------------------------------GAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred -------------------------------ChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11111111 123689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCe
Q 037155 1057 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1057 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
+.....+. .+++.+++ .|+|||++||+++ +.+.+|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888887 77777765 5999999999975 4455554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-16 Score=171.77 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=95.0
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC--CCCCc---eeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~---~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
+-+++|++++|+||||||||||+++|+| ..+++ ...+.+.+++..... .+.+++++|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 3689999999999999999999999998 33211 123577777754210 1123444443322221 2222221
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCC
Q 037155 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1052 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG-qrqRl~IA~aL~~-------~P~illLDEPT 1052 (1403)
+. ...+.+ +++.+..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3344556666665 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCeEEEEecC
Q 037155 1053 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1053 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~i~ll~~g 1101 (1403)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777877764 49999999995431 256788999999863
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=182.49 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=114.7
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEecc
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQ 270 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q 270 (1403)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.|++|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----------------------~G~--------------~vi~~~~e 318 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----------------------NKE--------------RAILFAYE 318 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----------------------TTC--------------CEEEEESS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----------------------CCC--------------CEEEEEEe
Confidence 568999999999999999999999999998643 232 12344555
Q ss_pred CCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccccc
Q 037155 271 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350 (1403)
Q Consensus 271 ~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 350 (1403)
++. .+++++.. + .+. +. +. +...|+....+
T Consensus 319 e~~----~~l~~~~~---~--------------------~g~----~~------------------~~-~~~~g~~~~~~ 348 (525)
T 1tf7_A 319 ESR----AQLLRNAY---S--------------------WGM----DF------------------EE-MERQNLLKIVC 348 (525)
T ss_dssp SCH----HHHHHHHH---T--------------------TSC----CH------------------HH-HHHTTSEEECC
T ss_pred CCH----HHHHHHHH---H--------------------cCC----CH------------------HH-HHhCCCEEEEE
Confidence 531 02222211 0 010 00 01 12345655555
Q ss_pred ccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEEEecCc---
Q 037155 351 TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS-----TTFQICKFLKQMVHIMDVTMIVALLQPA--- 422 (1403)
Q Consensus 351 t~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~-----t~~~i~~~L~~l~~~~~~tvii~~~q~~--- 422 (1403)
.... .|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.+ .|.|++++.|...
T Consensus 349 ~~p~-----~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~ 421 (525)
T 1tf7_A 349 AYPE-----SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMG 421 (525)
T ss_dssp CCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSC
T ss_pred eccc-----cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccC
Confidence 5554 49999999999999999999999999 99999999 99999999988765 5889999888762
Q ss_pred ------hhHHhhcCEEEEEcCCe
Q 037155 423 ------PETYDLFDDIILISEGQ 439 (1403)
Q Consensus 423 ------~~~~~~fD~IilL~~G~ 439 (1403)
..+..++|+|++|.+|+
T Consensus 422 ~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 422 AHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCSSCSSCCTTTCSEEEEEEEEE
T ss_pred cccccCcccceeeeEEEEEEEEE
Confidence 45677899999999886
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=192.34 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCChhHhhHHHHHHHH--hcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE
Q 037155 359 RGISGGQKKRVTTGEML--VGAAKVLLMDEISTGLDSSTTFQI-CKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI 435 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL--~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL 435 (1403)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ +..++.+.+..+.|++++.|. .+..+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999888888888 899999999999999999999888 566677765458888888776 4677899999999
Q ss_pred cCCeEEEecChhhH
Q 037155 436 SEGQIVYHGPRDNV 449 (1403)
Q Consensus 436 ~~G~iv~~G~~~~~ 449 (1403)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-16 Score=181.12 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=120.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC---
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--- 259 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--- 259 (1403)
++.+|+++ +.|.+|+.++|+||||||||||+++|+|..++ ..|.|.++|++..+.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~---------------------~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA---------------------DIIVLALIGERGREVNEF 115 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC---------------------SEEEEEEESCCHHHHHHH
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CEEEEEEecccHHHHHHH
Confidence 45799999 99999999999999999999999999999864 478998888642110
Q ss_pred -------CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccch
Q 037155 260 -------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQET 332 (1403)
Q Consensus 260 -------~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~ 332 (1403)
..++.+.++.|.+. ...+.+.-. ..+...
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~----------------------------------~~~~~~----- 151 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-----PALERMKAA----------------------------------FTATTI----- 151 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-----CHHHHHHHH----------------------------------HHHHHH-----
T ss_pred HHhhhhhhhhceEEEEECCCC-----CHHHHHHHH----------------------------------HHHHHH-----
Confidence 12355677776532 222222110 000000
Q ss_pred hHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCC
Q 037155 333 SLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH-IMD 411 (1403)
Q Consensus 333 ~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~-~~~ 411 (1403)
.++ ....| .|..+--+....+|+|| |||++| +++|++ |+|||+....++.+.++++.+ ..|
T Consensus 152 ---ae~-~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~G 213 (347)
T 2obl_A 152 ---AEY-FRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKG 213 (347)
T ss_dssp ---HHH-HHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSS
T ss_pred ---HHH-HHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCC
Confidence 000 00001 11000001123499999 899999 578876 999999999999999998764 335
Q ss_pred c-----EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 412 V-----TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 412 ~-----tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
. |+++..|... ...+|++++|.+|+++..|+.+++
T Consensus 214 siT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 214 SITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp EEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 4 4555444333 467999999999999999987765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-15 Score=193.15 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=96.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+..+++|+|+. |++++|+|||||||||||++|+|..... ..|.+. + . .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSFV----P--A--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB----S--S--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCcee----e--h--hccceeeHHH---hhccCCHH
Confidence 35699999998 9999999999999999999999953100 013211 1 1 1345788776 34455555
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 1051 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL--~~~P~illLDEP--- 1051 (1403)
|++. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1052 TSGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1052 TsgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
|++||..+. ..+.+.|++ .|+|+|++||+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 567777776 4899999999854
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-16 Score=184.16 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=85.3
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC-CCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++++.+++++++.| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 44567999999998 99999999999999999996 33 2356 777776543322235579999988888889
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
|+.|+..++..... .+.....++.+. +..+..+ +++|||||||+.+||+++ ++++||||+
T Consensus 79 tv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 79 TVVDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp EEEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred chhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 99998877543210 000011112221 1223332 369999999999988875 999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 037155 1054 -GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1085 (1403)
Q Consensus 1054 -gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1085 (1403)
|||+... +.++++.+. +.++|++.||+.
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 555665543 789999999863
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-15 Score=199.18 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccC
Q 037155 184 VQILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL 256 (1403)
Q Consensus 184 ~~iL~~vs~~i~~-------Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~ 256 (1403)
..+++|+++.+++ |++++|+|||||||||||+++ |.+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------------------- 814 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------------------- 814 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---------------------------------
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---------------------------------
Confidence 4699999999987 999999999999999999999 87631
Q ss_pred CCCCccceEE-EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 257 NEFVPQRTCA-YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 257 ~~~~~~~~~~-yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
...+| ||+|+.. .+||.|+|.. +.
T Consensus 815 -----~aqiG~~Vpq~~~---~l~v~d~I~~--ri--------------------------------------------- 839 (1022)
T 2o8b_B 815 -----MAQMGCYVPAEVC---RLTPIDRVFT--RL--------------------------------------------- 839 (1022)
T ss_dssp -----HHTTTCCEESSEE---EECCCSBEEE--EC---------------------------------------------
T ss_pred -----HhheeEEeccCcC---CCCHHHHHHH--Hc---------------------------------------------
Confidence 01233 8888753 4466555421 10
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT-FQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~-~~i~~~L~~l~~~~~~tv 414 (1403)
|+.+..+. | ...+|+|++ ++++|++++++|++++||||++|+|+... ..++..|+.+.+..+.++
T Consensus 840 --------g~~d~~~~--~---~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~v 905 (1022)
T 2o8b_B 840 --------GASDRIMS--G---ESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRT 905 (1022)
T ss_dssp --------C--------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred --------CCHHHHhh--c---hhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEE
Confidence 11110000 0 123677666 49999999999999999999999999885 446788888876557788
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEE--EecChhh
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIV--YHGPRDN 448 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv--~~G~~~~ 448 (1403)
+++.|.+ ..+...+|++.++ +|++. +.|+.++
T Consensus 906 l~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 906 LFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp EEECCCH-HHHHHTSSCSSEE-EEEEEEC-------
T ss_pred EEEeCCH-HHHHHhCCcceee-cCeEEEEEecCccc
Confidence 8876654 4666778998886 58887 5565543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-17 Score=178.09 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=111.7
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCC--CCCCHHHHHHHHHhh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS--PHVTLYESLLYSAWL 985 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l 985 (1403)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. +.+|+.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999986431 378999998776 5689988866532
Q ss_pred hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 037155 986 RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1054 (1403)
Q Consensus 986 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq----rqRl~IA~aL~~~P~illLDEPTsg------- 1054 (1403)
..+... ..+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123366777888877655543 23689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1084 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1084 (1403)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999875 45699999999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-15 Score=163.41 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccC
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQH 271 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 271 (1403)
+-+++|++++|+||||||||||+++|+|...+... ......|.+.+++... ...+.++++.|+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~--------------~g~~~~~~i~~~~~~~---~~~~~i~~~~~~ 82 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE--------------EGGLNGSVIWIDTENT---FRPERIREIAQN 82 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG--------------GTCCSCEEEEEESSSC---CCHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccc--------------cCCCCCEEEEEECCCC---CCHHHHHHHHHH
Confidence 57999999999999999999999999996543100 0001235667766431 011234444554
Q ss_pred CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccc
Q 037155 272 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351 (1403)
Q Consensus 272 d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 351 (1403)
..+.+. ||.||+.+..
T Consensus 83 ~~~~~~-~~~~~~~~~~--------------------------------------------------------------- 98 (231)
T 4a74_A 83 RGLDPD-EVLKHIYVAR--------------------------------------------------------------- 98 (231)
T ss_dssp TTSCHH-HHHHTEEEEE---------------------------------------------------------------
T ss_pred cCCCHH-HHhhcEEEEe---------------------------------------------------------------
Confidence 433333 4455443321
Q ss_pred cccCccCCCCChh-HhhHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCC
Q 037155 352 MVGDEMRRGISGG-QKKRVTTGEMLV-------GAAKVLLMDEISTGLDSST------------TFQICKFLKQMVHIMD 411 (1403)
Q Consensus 352 ~vg~~~~rgLSGG-qkqRvsia~aL~-------~~p~illLDEptsgLDs~t------------~~~i~~~L~~l~~~~~ 411 (1403)
..+++ +++.+..+++++ .+|+++++||||++||+.. ..++++.|+++++..+
T Consensus 99 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g 170 (231)
T 4a74_A 99 --------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD 170 (231)
T ss_dssp --------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC
Confidence 12222 222233344443 3899999999999999842 2368888888877778
Q ss_pred cEEEEEEecCc---hhHHhhcCEEEEEcCC
Q 037155 412 VTMIVALLQPA---PETYDLFDDIILISEG 438 (1403)
Q Consensus 412 ~tvii~~~q~~---~~~~~~fD~IilL~~G 438 (1403)
.|+|++.|... ..+...+|.+++|++|
T Consensus 171 ~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 171 IAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CEEEEEEECC---------CCSEEEEEEEC
T ss_pred CeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 88888776332 1366789999999875
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=144.48 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=69.1
Q ss_pred CCCCChhHhhHHHHH------HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 358 RRGISGGQKKRVTTG------EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 358 ~rgLSGGqkqRvsia------~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
...||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+|++.|++ +..+.+|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhCCE
Confidence 345999999999876 8999999999999999999999999999999988653 78888887775 57789999
Q ss_pred EEEE--cCCeE
Q 037155 432 IILI--SEGQI 440 (1403)
Q Consensus 432 IilL--~~G~i 440 (1403)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-14 Score=165.02 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=95.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccce
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRT 264 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~ 264 (1403)
++|+|+| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--------------------~~G~I~~~g~~i~------- 65 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--------------------KSYHIITIEDPIE------- 65 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--------------------CCCEEEEEESSCC-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--------------------CCCEEEEcCCcce-------
Confidence 4899999 9999999999999999999999999988542 2799999886542
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
|+.|+... +. . + +.+|
T Consensus 66 --~~~~~~~~-----------~v--~---------------------------------------q----------~~~g 81 (261)
T 2eyu_A 66 --YVFKHKKS-----------IV--N---------------------------------------Q----------REVG 81 (261)
T ss_dssp --SCCCCSSS-----------EE--E---------------------------------------E----------EEBT
T ss_pred --eecCCcce-----------ee--e---------------------------------------H----------HHhC
Confidence 22222100 00 0 0 0011
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
++. ..-|++||++|..+|+++++|||| |+.+...+++ . +. .|.++++++|...
T Consensus 82 l~~-----------------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~t~H~~~-- 134 (261)
T 2eyu_A 82 EDT-----------------KSFADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFGTLHTNT-- 134 (261)
T ss_dssp TTB-----------------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEEEECCSS--
T ss_pred CCH-----------------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEEEeCcch--
Confidence 211 112899999999999999999999 9888655443 2 23 4788888877654
Q ss_pred HHhhcCEEEEEcC
Q 037155 425 TYDLFDDIILISE 437 (1403)
Q Consensus 425 ~~~~fD~IilL~~ 437 (1403)
....+|+++.|..
T Consensus 135 ~~~~~dri~~l~~ 147 (261)
T 2eyu_A 135 AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhhcC
Confidence 6778899988754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=187.57 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=103.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+..+++|+|+. ++|++++|+|||||||||||++|+|....+. .|...... ...++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 35699999999 9999999999999999999999998421000 12111111 134566655 34444554
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
|++... .+.+|+|+++ +..+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 443211 1136766654 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1057 ARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1057 ~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
+.....+ +..++.+.+ .|+++|++||+++ +.+.+|++..+.+ |++.+.
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 9776664 788888887 4999999999975 4567777655553 565554
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-15 Score=167.60 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=106.2
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCC
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDL 273 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 273 (1403)
.++|++++|+||||||||||+++|+|.+. . .++|++|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~------------------------~----------------~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG------------------------E----------------RVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG------------------------G----------------GEEEEEGGGC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC------------------------C----------------CeEEEecCcc
Confidence 57899999999999999999999999762 0 4789999987
Q ss_pred CC--CCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccc
Q 037155 274 HH--GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351 (1403)
Q Consensus 274 ~~--~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 351 (1403)
++ ..+|+++++.+.....+ . .+ .......++.+++.+..+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~---------~-------------~~---------------~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 43 YKDLGHLPLEERLRVNYDHPD---------A-------------FD---------------LALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp BCCCTTSCHHHHHHSCTTSGG---------G-------------BC---------------HHHHHHHHHHHHTTCCEEE
T ss_pred ccCcccccHHHhcCCCCCChh---------h-------------hh---------------HHHHHHHHHHHHcCCCcCC
Confidence 76 56799998766321000 0 00 0112334566666665555
Q ss_pred cccCccCCCCChhH----hhHHHHHHHHhcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 352 MVGDEMRRGISGGQ----KKRVTTGEMLVGAAKVLLMDEISTG-------LDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 352 ~vg~~~~rgLSGGq----kqRvsia~aL~~~p~illLDEptsg-------LDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
.+.+ +|+|| +||+++|++++.+|+++++||||++ ||+....++.+.+++..+..|.|++.+.|+
T Consensus 86 ~~~~-----~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 86 PVYD-----FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CCEE-----TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred Cccc-----CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4433 88886 4789999999999999999999999 999999999999887654457777665554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-15 Score=172.74 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hh--cceeeEeecCCCCCCCCCHHHHHH
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TF--ARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
+|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999996543 258899999875321 12 245899999998888899999987
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 037155 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~ 1060 (1403)
+... +. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6521 10 00 012223333332222 2455669999999999999994333 3444444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCC
Q 037155 1061 AIVMRTVRNTVDT-GRTVVCTIHQP 1084 (1403)
Q Consensus 1061 ~~i~~~l~~~~~~-g~tvi~~~H~~ 1084 (1403)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4556666666543 89999999974
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-15 Score=172.43 Aligned_cols=170 Identities=20% Similarity=0.211 Sum_probs=103.8
Q ss_pred eeeece-EEEEeCCeEEEEEcCCCCChHHHHHHHhccc--cccchhhcccchhhhhhhccCCCcceE-EEECCccCCCCC
Q 037155 185 QILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--HENLRVRFQSNKFLIIRIWKTEQASGK-ITYCGHELNEFV 260 (1403)
Q Consensus 185 ~iL~~v-s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~~~G~~~~~~~ 260 (1403)
+.|+++ +|.+++|++++|+||||||||||++.|+|.. ++... ...|+ |.+++.+. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~G-----------------g~~G~vi~i~~e~~--~- 177 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-----------------GLNGSVIWIDTENT--F- 177 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----------------SCSCEEEEEESSSC--C-
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcC-----------------CCCCeEEEEeCCCC--C-
Confidence 456665 6899999999999999999999999999987 32100 01377 78887543 1
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++++.|...+++. ++.||+.+....
T Consensus 178 ~~~~i~~i~q~~~~~~~-~v~~ni~~~~~~-------------------------------------------------- 206 (349)
T 1pzn_A 178 RPERIREIAQNRGLDPD-EVLKHIYVARAF-------------------------------------------------- 206 (349)
T ss_dssp CHHHHHHHHHTTTCCHH-HHGGGEEEEECC--------------------------------------------------
T ss_pred CHHHHHHHHHHcCCCHH-HHhhCEEEEecC--------------------------------------------------
Confidence 23456677776554443 555655442110
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHH
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV-------GAAKVLLMDEISTGLDSST------------TFQICK 401 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~-------~~p~illLDEptsgLDs~t------------~~~i~~ 401 (1403)
-|++|+|++.++++++ .+|+++++||||++||+.. ..++++
T Consensus 207 --------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~ 266 (349)
T 1pzn_A 207 --------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 266 (349)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH
Confidence 0233344444444443 7899999999999999852 356677
Q ss_pred HHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecCh
Q 037155 402 FLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPR 446 (1403)
Q Consensus 402 ~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~ 446 (1403)
.|+++++..+.|+|++.|... +.-..+++......|+++.++..
T Consensus 267 ~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 267 DLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp HHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred HHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 778887777888888766433 33334556667777877766553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-15 Score=170.46 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---------ccceEE
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---------PQRTCA 266 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~ 266 (1403)
+|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+..... .++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~---------------------~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~ 159 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN---------------------LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 159 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT---------------------TTCCEEEECCCCSSTTTTHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---------------------cCCEEEEEeecCCChhHHHHHHHHHHhcCce
Confidence 6999999999999999999999999865 4799999998764322 124589
Q ss_pred EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCc
Q 037155 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD 346 (1403)
Q Consensus 267 yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 346 (1403)
|++|++..+|.+||+|++.++.. .+ .+ ..+++..|+.
T Consensus 160 ~v~q~~~~~p~~~v~~~v~~~~~-~~---------------------~d---------------------~~llDt~G~~ 196 (304)
T 1rj9_A 160 VIQGPEGTDSAALAYDAVQAMKA-RG---------------------YD---------------------LLFVDTAGRL 196 (304)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHH-HT---------------------CS---------------------EEEECCCCCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh-CC---------------------CC---------------------EEEecCCCCC
Confidence 99999988888899999976411 00 00 0011222332
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+..+.. ++..+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.|+|+..|.+
T Consensus 197 ~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 197 HTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp TTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred CchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 222211 455568999999999999995555 56666666677777777665578888877743
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=157.85 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=101.7
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 489999999999999999999999997432 2333 23433211 2346777665421 01111111 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1061 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs--gLD~~~---~~ 1061 (1403)
.+... ...+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 1245678888887765543 346999998865 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 037155 1062 IVMRTVRNTV-DTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1062 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1085 (1403)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888999886 45999999999864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=165.04 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=64.7
Q ss_pred CCChhHhhHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE
Q 037155 360 GISGGQKKRVTTGEMLV----GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI 435 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL 435 (1403)
.||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .+.++|++.|+ .+..+.+|+++.|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEEE
Confidence 49999999999999999 68999999999999999999999999998753 35677777665 4678899999988
Q ss_pred c
Q 037155 436 S 436 (1403)
Q Consensus 436 ~ 436 (1403)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-15 Score=163.66 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccceEEEeccCCCCC
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRTCAYISQHDLHH 275 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~ 275 (1403)
|++++|+||||||||||+++|+|.++ .+| |.++|....+.. .++.++|++|+. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~----------------------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~ 55 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK----------------------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--S 55 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH----------------------HTT-CCCEEEECCEEETTSSEEEEEEEET--T
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc----------------------cCC-EEEcCEecchhHhhhceEEEEEEec--c
Confidence 78999999999999999999999874 257 888886654322 357899999974 1
Q ss_pred CCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc-ccccccc
Q 037155 276 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI-CADTMVG 354 (1403)
Q Consensus 276 ~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg 354 (1403)
+. ++++ ++... +.+. ..+..+|
T Consensus 56 g~---~~~l---~~~~~---------------------------------------------------~~~~~~~~~~v~ 78 (189)
T 2i3b_A 56 GT---RGPL---SRVGL---------------------------------------------------EPPPGKRECRVG 78 (189)
T ss_dssp SC---EEEE---EECCC---------------------------------------------------CCCSSSCCEESS
T ss_pred cc---eehh---hcccc---------------------------------------------------cCCccccccccc
Confidence 11 1111 11100 0000 0112444
Q ss_pred CccCCCCChhHhhHHH-HHH---HHhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEecCchhH
Q 037155 355 DEMRRGISGGQKKRVT-TGE---MLVGAAKVLLMDE--ISTGLDSSTTFQICKFLKQMVHIMDVTMIV---ALLQPAPET 425 (1403)
Q Consensus 355 ~~~~rgLSGGqkqRvs-ia~---aL~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii---~~~q~~~~~ 425 (1403)
. .+..+|||||+++. +++ |+..+|++++||| |+..+|......+.+.++ . ..++|+ ++.|..+
T Consensus 79 ~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~-- 150 (189)
T 2i3b_A 79 Q-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP-- 150 (189)
T ss_dssp S-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--
T ss_pred e-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--
Confidence 2 33459999999984 444 5889999999999 898899876655555554 2 344553 3323332
Q ss_pred HhhcCEEEEEcCCeEEEec
Q 037155 426 YDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 426 ~~~fD~IilL~~G~iv~~G 444 (1403)
..+.|+|..+.+|+|+.-.
T Consensus 151 ~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 151 LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CTTHHHHHTTCCSEEEECC
T ss_pred hHHHHHHeecCCcEEEEeC
Confidence 3567888888899988643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-15 Score=172.63 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=99.4
Q ss_pred eeee-EEEEeCCeEEEEEccCCCchHHHHHhhcCCC--CC--ceeEEE-EEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 037155 901 LHSV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYIEGD-IKISGYPKKQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 901 L~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
|+++ ++.+++|++++|+||||||||||++.|++.. .+ |...|. +++++.... .++.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 4443 4789999999999999999999999999853 21 111256 888886531 12335566665433221 2
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEE
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-------ANPSIIF 1047 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~-------~~P~ill 1047 (1403)
+.||+.+. +. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222111 00 01567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1048 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1048 LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
+||||+++|+.. ...+++.|+++++ .|+|||+++|... +....++...... +|+++.+++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 999999999852 3566667777764 4899999999864 3333334444443 455544433
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=179.92 Aligned_cols=71 Identities=10% Similarity=0.154 Sum_probs=58.6
Q ss_pred CCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecCchhHHhhcCEE
Q 037155 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQIC-KFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~-~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~I 432 (1403)
..+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+.|++++.|.+ +..+++|+.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 3489999999999998 8999999999999999999999987 677777655688888887764 455666653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=157.38 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=105.9
Q ss_pred eEeeeeEE-EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcc---eeeEeecCCCCCCCCC
Q 037155 899 QLLHSVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR---VSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 899 ~iL~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~Q~~~~~~~lT 974 (1403)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..++.+|..... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 35777774 7999999999999999999999999974321 1244544443322211111 122222211000 000
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1052 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illLDEPT 1052 (1403)
+ ++.....++ ...+ ....|.++.++...+.....+|+ ++++||||
T Consensus 87 ~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 I------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp E------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred E------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 000000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCeEEEEec
Q 037155 1053 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1053 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~i~ll~~ 1100 (1403)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...||++++|.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99989999999999864 5899999999972 136778999999975
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-14 Score=180.73 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=94.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+++|+|+. |++++|+|||||||||||++|+|..... ..|.+. . ..+.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~--------------------~~G~~v------p--a~~~ 614 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA--------------------QVGSFV------P--AEEA 614 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH--------------------TTTCCB------S--SSEE
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc--------------------ccCcee------e--hhcc
Confidence 5689999999 9999999999999999999999975310 234321 0 0124
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.+++++| +++.+|+.||+.
T Consensus 615 ~i~~v~~---i~~~~~~~d~l~---------------------------------------------------------- 633 (765)
T 1ewq_A 615 HLPLFDG---IYTRIGASDDLA---------------------------------------------------------- 633 (765)
T ss_dssp EECCCSE---EEEECCC---------------------------------------------------------------
T ss_pred ceeeHHH---hhccCCHHHHHH----------------------------------------------------------
Confidence 5677766 344455555542
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEE
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEML--VGAAKVLLMDEI---STGLDSSTT-FQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL--~~~p~illLDEp---tsgLDs~t~-~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.|+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+.+.|++ .+.|++++
T Consensus 634 ---------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~ 694 (765)
T 1ewq_A 634 ---------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFA 694 (765)
T ss_dssp ----------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEE
T ss_pred ---------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEE
Confidence 24899999999999999 999999999999 999998875 568888765 36788888
Q ss_pred EecC
Q 037155 418 LLQP 421 (1403)
Q Consensus 418 ~~q~ 421 (1403)
.|.+
T Consensus 695 TH~~ 698 (765)
T 1ewq_A 695 THYF 698 (765)
T ss_dssp CCCH
T ss_pred eCCH
Confidence 7754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-16 Score=164.82 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=100.1
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~ 989 (1403)
|++++|+||||||||||+++|+|... . +| |.++|....+ ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999653 2 46 7777765532 23567789999974 1111 111 11100
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHH
Q 037155 990 DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1063 (1403)
Q Consensus 990 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl-~IA~---aL~~~P~illLDE--PTsgLD~~~~~~i 1063 (1403)
..+ ....+..+|..+ ..+|+|||+++ ++++ |+..+|+|||||| ||..+|......+
T Consensus 67 ~~~-----------------~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 67 EPP-----------------PGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp CCC-----------------SSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred cCC-----------------ccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 000 000111333322 25999999988 4454 5789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1064 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1064 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+-
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred HHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 54443 4445553 2388641 2346665554 5788776553
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-15 Score=171.60 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=77.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc-ccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
++.+++|+++.| +|+||||||||||++.|+|. ..+ .+| |.++|.+......
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---------------------~~g-i~~~g~~~~~t~~ 61 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---------------------ERV-ISGAAEKIERTVQ 61 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-------------------------------------------
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---------------------CCC-cccCCcccCCcce
Confidence 457999999998 99999999999999999996 432 467 7777766543222
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.+.++|+.|++.....+||.||..++.... ..+.. ....+++.
T Consensus 62 ~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-------------~~e~~-----------------------~~l~~~l~- 104 (301)
T 2qnr_A 62 IEASTVEIEERGVKLRLTVVDTPGYGDAIN-------------CRDCF-----------------------KTIISYID- 104 (301)
T ss_dssp ---CEEEEC---CCEEEEEEEEC------------------------C-----------------------TTHHHHHH-
T ss_pred EeeEEEEecCCCcccCcchhhhhhhhhhcC-------------cHHHH-----------------------HHHHHHHH-
Confidence 356899999888888889999987742210 00000 00111111
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTG-LDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
+..+..+ +++|||||||+.+||+++ ++++||||++ ||+... +.++++....+.++|+.
T Consensus 105 -----~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 105 -----EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp -----HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEEC
T ss_pred -----HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEE
Confidence 1122233 349999999999998884 9999999985 999873 55555543334444443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=151.54 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=101.0
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCC
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHD 272 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 272 (1403)
-+++|++++|+||||||||||++.+++.+. .|.+ +.|.... ....+.|+..++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----------------------~g~~-~~g~~~~---~~~~v~~~~~e~ 78 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----------------------GGPD-LLEVGEL---PTGPVIYLPAED 78 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------------------TCCC-TTCCCCC---CCCCEEEEESSS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----------------------cCCC-cCCCccC---CCccEEEEECCC
Confidence 589999999999999999999999998652 3444 2343221 134678887664
Q ss_pred CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccccccc
Q 037155 273 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352 (1403)
Q Consensus 273 ~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 352 (1403)
... .+.+.+.- + +...+ ....+.+++.+++.+..+..
T Consensus 79 ~~~---~~~~r~~~----------------~-------g~~~~-----------------~~~~~~~~~~l~l~~~~~~~ 115 (279)
T 1nlf_A 79 PPT---AIHHRLHA----------------L-------GAHLS-----------------AEERQAVADGLLIQPLIGSL 115 (279)
T ss_dssp CHH---HHHHHHHH----------------H-------HTTSC-----------------HHHHHHHHHHEEECCCTTSC
T ss_pred CHH---HHHHHHHH----------------H-------HhhcC-----------------hhhhhhccCceEEeecCCCC
Confidence 210 11111100 0 00000 01123456777777766555
Q ss_pred ccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEIST--GLDSSTT---FQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 353 vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEpts--gLDs~t~---~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+. .+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|++.|..
T Consensus 116 ~~-----~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 116 PN-----IMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp CC-----TTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cc-----cCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 54 4999998876 67888999999999999 9998554 7888999998876788888876654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-13 Score=146.56 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=64.7
Q ss_pred CChhHhhHHHHHHHHhcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCc-------hhHHhhc
Q 037155 361 ISGGQKKRVTTGEMLVGAAK--VLLMDEISTGL--DSSTTFQICKFLKQMVHIMDVTMIVALLQPA-------PETYDLF 429 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~--illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~-------~~~~~~f 429 (1403)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|++++.|... +.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 58999988888877778999 99999999888 9999999999999998777888888776652 4578899
Q ss_pred CEEEEEcCC
Q 037155 430 DDIILISEG 438 (1403)
Q Consensus 430 D~IilL~~G 438 (1403)
|+|++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999764
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-13 Score=163.32 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=88.3
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
+|+++ ...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~-------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD-------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT--------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc--------
Confidence 45555 57899999999999999999999999964321 12444433332211 11222334444322111
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.++..+ +||++|..+|++|++|||| |.++
T Consensus 182 --------------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 182 --------------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp --------------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 122222 8999999999999999999 6665
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
.. .+.+++.+|+|||+|+|+.+. . +.+||++.|..
T Consensus 211 ~~----~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~ 245 (356)
T 3jvv_A 211 IR----LALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFP 245 (356)
T ss_dssp HH----HHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSC
T ss_pred HH----HHHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcC
Confidence 44 444456679999999999873 3 78999988853
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=176.93 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=103.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+++|+|+. ++|++++|+|||||||||||++|+|..... ..|. .+.. ...
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--------------------q~G~------~vpa--~~~ 645 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--------------------YIGS------YVPA--QKV 645 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--------------------TTTC------CBSS--SEE
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--------------------hcCc------ccch--hcc
Confidence 4689999999 999999999999999999999999974211 1121 1100 012
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++++.| +++.+++.|++..+
T Consensus 646 ~i~~~~~---i~~~~~~~d~l~~~-------------------------------------------------------- 666 (800)
T 1wb9_A 646 EIGPIDR---IFTRVGAADDLASG-------------------------------------------------------- 666 (800)
T ss_dssp EECCCCE---EEEEEC----------------------------------------------------------------
T ss_pred cceeHHH---HHhhCCHHHHHHhh--------------------------------------------------------
Confidence 3555544 34445555554221
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCc
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI-CKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+ ..+|+|+++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.+++++.|.+
T Consensus 667 -~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~- 730 (800)
T 1wb9_A 667 -R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF- 730 (800)
T ss_dssp -----------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG-
T ss_pred -h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH-
Confidence 0 125666654 4444556899999999999999999888776 6777777654578888887765
Q ss_pred hhHHhhcCEEEEEcCCeEEEec
Q 037155 423 PETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G 444 (1403)
+..+++|++..+.+|++.+..
T Consensus 731 -el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 731 -ELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp -GGGGHHHHSTTEEEEEEEEEE
T ss_pred -HHHHHhhhhhceEEEEEEEEE
Confidence 455688887777777776544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-14 Score=181.98 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=105.4
Q ss_pred EEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC------CCCccceEEEeccCCC
Q 037155 200 TLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN------EFVPQRTCAYISQHDL 273 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~------~~~~~~~~~yv~Q~d~ 273 (1403)
++|+|||||||||||++|+|...|. .+|.|+++|.++. ....++.++|++|++.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--------------------~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~ 107 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--------------------GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE 107 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------------------------CCCSCEEEEEEECSSSSCCEEEESCC---CC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--------------------CCCeEEEcCEEEEEecCCccccceeEEeeeccccc
Confidence 9999999999999999999987541 4799999998741 1234578999999999
Q ss_pred CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccc
Q 037155 274 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353 (1403)
Q Consensus 274 ~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 353 (1403)
+++.+||+||+.++....+. .
T Consensus 108 l~~~~tv~e~i~~~~~~~~~----------------------------------------------------~------- 128 (608)
T 3szr_A 108 ISDASEVEKEINKAQNAIAG----------------------------------------------------E------- 128 (608)
T ss_dssp CCCHHHHHTTHHHHHHHHHC----------------------------------------------------S-------
T ss_pred CCCHHHHHHHHHHHHHHhcC----------------------------------------------------C-------
Confidence 99999999999774221100 0
Q ss_pred cCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch----
Q 037155 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEI------STGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP---- 423 (1403)
Q Consensus 354 g~~~~rgLSGGqkqRvsia~aL~~~p~illLDEp------tsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~---- 423 (1403)
..++| ++++.++.+....|+++++||| |+|||+....++.+.++++.......+++.+.|...
T Consensus 129 ----~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 129 ----GMGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp ----SSCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred ----ccccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 00111 1222222223358999999999 999999999999999999754333333333333321
Q ss_pred hHHh---h-----cCEEEEEcCCeEEEecChhhHHH
Q 037155 424 ETYD---L-----FDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 424 ~~~~---~-----fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+..+ . ...|+|+.++.++..|+.+++.+
T Consensus 202 ~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 202 EALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 1122 2 24578999998888887655543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-13 Score=174.47 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=93.4
Q ss_pred EEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC------hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhC
Q 037155 914 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRL 987 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~ 987 (1403)
+||+|||||||||||++|+|...+ ..+|.|.++|.+.. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999997543 13799999997631 13466789999999999999999999987542211
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHH
Q 037155 988 SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1061 (1403)
Q Consensus 988 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP------TsgLD~~~~~ 1061 (1403)
... . ++| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~~~----------------~----------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG----------------M----------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS----------------S----------------CCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc----------------c----------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0 011 0112222233458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 037155 1062 IVMRTVRNTVDT--GRTVVCTIHQPS 1085 (1403)
Q Consensus 1062 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1085 (1403)
.+.++++++.++ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 678889999876
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-14 Score=169.24 Aligned_cols=154 Identities=11% Similarity=0.068 Sum_probs=90.7
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++++.+++|+||.| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|.+.+.+.+|
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 34567999999998 999999999999999999964311112222222211 112356899999988888899
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEP 1051 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~---illLDEP 1051 (1403)
+.|++.+...... ... ...+.+.+ +. .++.+.+||++|||+++.+|+ +|++|||
T Consensus 92 v~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 92 IVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp EEECC--------------------CHHHHHHH------HH--------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred eeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 9999887643210 000 11111111 11 256677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1052 T-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1052 T-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
| .|||+... +.++.+.. +.+||+++|..+
T Consensus 149 t~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred cccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9 69998874 34445543 788888888654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=136.79 Aligned_cols=75 Identities=11% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1022 VNGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. ...+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 34699999999999999974 4699999999999999999999999999865 57899999985 46788999986
Q ss_pred Ee
Q 037155 1098 MK 1099 (1403)
Q Consensus 1098 l~ 1099 (1403)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-14 Score=153.31 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=90.3
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC---CceeEEEEEEcCccC--ChhhhcceeeEeecCCCCCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPK--KQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~~~--~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+|++ +.+++|..++|+|+||||||||++.|+|... ..+..|.+.+.+... ....+....|+..+. .+.-.
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 5666 7789999999999999999999999999651 012234432211000 000000111211100 00000
Q ss_pred ---HHHHHHHHHhh-hC----------CCCCcHHHHHHHHHHHHHHcCCCCcc-cccccCCCCCCCCHHHHHH-HHHHHH
Q 037155 975 ---LYESLLYSAWL-RL----------SSDVDTKKRKIFVDEVMELVELKPLR-DALVGLPGVNGLSTEQRKR-LTIAVE 1038 (1403)
Q Consensus 975 ---v~e~l~~~~~l-r~----------~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqR-l~IA~a 1038 (1403)
.+..+...... +. ...... .+..+.+.++..++.... ..+ ...+|+||||| +..+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK-----~D~~s~~~~~~~~~~~~~ 164 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTK-----ADKLASGARKAQLNMVRE 164 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEEC-----GGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEec-----ccCCCchhHHHHHHHHHH
Confidence 01111111000 00 001111 122344555666654321 222 23589999999 899999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 037155 1039 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076 (1403)
Q Consensus 1039 L~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1076 (1403)
++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 165 ~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 165 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998766544
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-13 Score=164.83 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=112.4
Q ss_pred cccceEeeeeEEEEeCCeE--EEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++... |++||+++++|++ +||+||||||||||+++|+|..- .|.- +... .....++.++|++|++.+++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccc
Confidence 34445 9999999999999 99999999999999999999742 1211 1111 111224578999999888889
Q ss_pred CCHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHHc-CCCC----ccccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 037155 973 VTLYESLLYSAWLRLSSDV--DTKKRKIFVDEVMELV-ELKP----LRDAL----VG--LPGVNGLSTEQRKRLTIAVEL 1039 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l-~L~~----~~~~~----vg--~~~~~~LSgGqrqRl~IA~aL 1039 (1403)
+||.|++.|+......... -.+......++.|+.. ++.. ..|.. +. .+...+|+-.+ +.|+++|
T Consensus 97 ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 97 LTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred cchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 9999998765321000000 0011223344555554 4431 12221 11 11223577776 7899999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 037155 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1040 ~~~P~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1083 (1403)
..+++||++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999988899999987 77779999988764
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-13 Score=152.34 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=85.3
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH----HHHHHHH
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL----YESLLYS 982 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv----~e~l~~~ 982 (1403)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+... ..++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 47899999999999999999999999965421357899998876543 234568999997543333222 1111110
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 983 AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 983 ~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
. + . .+.| +++ +.+++..++++||| ||+.++..
T Consensus 91 ~------------------------------~-~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G------------------------------N-Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T------------------------------E-E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h------------------------------c-c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 0 0 0122 111 34556678999999 99999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
+++.+. +++||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 4899999999875
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=133.14 Aligned_cols=153 Identities=19% Similarity=0.150 Sum_probs=97.7
Q ss_pred EeeeeE-EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.+.++... . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 455555 3689999999999999999999999998 221 2334443321 0 111 11
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1055 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG--qrqRl~IA~aL~~~-P~illLDEPTsgL 1055 (1403)
+.- .... ..... +++++.+.+ . ..|++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 122222211 1 23333 46788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCeEEEEecC
Q 037155 1056 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1056 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~i~ll~~g 1101 (1403)
|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24566668887654 8999999998541 356789999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=127.37 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=69.6
Q ss_pred CCCChhHhhHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEE
Q 037155 359 RGISGGQKKRVTTGEMLV----GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL 434 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~Iil 434 (1403)
..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|++.|++ .+...+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEEE
Confidence 459999999999999996 56799999999999999999999999998764 45666665553 57889999986
Q ss_pred E--cCCeE-EEecChhhHHH
Q 037155 435 I--SEGQI-VYHGPRDNVLE 451 (1403)
Q Consensus 435 L--~~G~i-v~~G~~~~~~~ 451 (1403)
+ .+|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 5 46643 34455554443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-14 Score=172.40 Aligned_cols=73 Identities=15% Similarity=0.022 Sum_probs=48.9
Q ss_pred CChhHhhHHHHHHHHh-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 037155 361 ISGGQKKRVTTGEMLV-GAAKVLLMDE---IS------TGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~-~~p~illLDE---pt------sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 430 (1403)
+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++.. +|. +..+++|
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~~-~~~r~~~ 336 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SPS-YLDRYNQ 336 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CSS-HHHHHHH
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CCC-HHHHHHH
Confidence 5677788888888775 5899999999 65 589999999999999887654466666654 443 4444555
Q ss_pred EEEEE
Q 037155 431 DIILI 435 (1403)
Q Consensus 431 ~IilL 435 (1403)
.+.++
T Consensus 337 ~i~~i 341 (365)
T 1lw7_A 337 VKAVI 341 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=136.09 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=59.2
Q ss_pred CChhH--hhHHHHHHHHhcC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHHhCCcEEEEEEecCch------
Q 037155 361 ISGGQ--KKRVTTGEMLVGA-AKVLLMDEISTGLDSST--------TFQICKFLKQMVHIMDVTMIVALLQPAP------ 423 (1403)
Q Consensus 361 LSGGq--kqRvsia~aL~~~-p~illLDEptsgLDs~t--------~~~i~~~L~~l~~~~~~tvii~~~q~~~------ 423 (1403)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.|++++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45554 5688888999986 99999999999999743 2456677888887778888877654431
Q ss_pred ------hHHhhcCEEEEEcCC
Q 037155 424 ------ETYDLFDDIILISEG 438 (1403)
Q Consensus 424 ------~~~~~fD~IilL~~G 438 (1403)
.+...+|.|++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 456789999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-12 Score=151.89 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCC
Q 037155 370 TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEG 438 (1403)
Q Consensus 370 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G 438 (1403)
+||+||..+|+++++|||+ |..+...+.+ .+. .|.++++++|..+ ..+.+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 8999999999999999999 7666444333 333 4788888877665 33889999988654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-14 Score=150.45 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=90.1
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|... +..|+.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 68899999999999999999999999743 47899998653211 11234678887644 4678888887654321
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~ 1066 (1403)
...+.. ..++.+++..++....+. + ..+..+|+|++||++++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~-~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--A-RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--C-SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--C-CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 100000 000111111111111100 1 012359999999999999999999876 688877777777
Q ss_pred HHHHH
Q 037155 1067 VRNTV 1071 (1403)
Q Consensus 1067 l~~~~ 1071 (1403)
++.+.
T Consensus 144 ~~~l~ 148 (191)
T 1zp6_A 144 FADLG 148 (191)
T ss_dssp TTCCG
T ss_pred HhccC
Confidence 66553
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-14 Score=156.35 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=108.0
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSD 990 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~ 990 (1403)
|++++|+||||||||||+++|++.. .|.+.++|.+... ....|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999732 3678888754321 1235777776544455678888776543211000
Q ss_pred CcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 991 VDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 991 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L--SgGqrqRl~IA~------aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
. ..+++.+......+. .+.+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0123 778887887777 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
++.++.+.+.+.+||.++|. ++ ++.+.||+++ + .|+++..|++.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 88888876667899999998 76 5778899988 4 68888888753
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-12 Score=154.86 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=95.1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
+|++++ +++|++++|+||||||||||+++|+|...+. .+|.|.+.|.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 677776 8999999999999999999999999964321 1588877665543 22345578888741
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
+|+. ...+ +.+|+.+|..+|++|++|||| |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1111 1134 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
.. ..++. +..|.+|++|+|..+ ..+.+|+++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 33443 356999999999965 567788877663
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-13 Score=146.43 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=86.7
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccceEEEeccC
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRTCAYISQH 271 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~ 271 (1403)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.++.... .++.++|++|+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-----------------------~~g~i~i~~d~~~~~~~~~~~~~~~~~~ 61 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-----------------------GVPKVHFHSDDLWGYIKHGRIDPWLPQS 61 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-----------------------SSCEEEECTTHHHHTCCSSCCCTTSSSH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-----------------------CCCeEEEcccchhhhhhcccccCCccch
Confidence 36799999999999999999999999973 3689999987643221 12345777775
Q ss_pred CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccc--
Q 037155 272 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICA-- 349 (1403)
Q Consensus 272 d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-- 349 (1403)
.. +.+||.|++.+.+... .. .+.. . ..+.+++..+++...
T Consensus 62 ~~--~~~~v~~~l~~~~~~~------------~~----~~~~--~------------------~~~~~~~~~~l~~~~~~ 103 (191)
T 1zp6_A 62 HQ--QNRMIMQIAADVAGRY------------AK----EGYF--V------------------ILDGVVRPDWLPAFTAL 103 (191)
T ss_dssp HH--HHHHHHHHHHHHHHHH------------HH----TSCE--E------------------EECSCCCTTTTHHHHTT
T ss_pred hh--hhHHHHHHHHHHHHHH------------hc----cCCe--E------------------EEeccCcHHHHHHHHhc
Confidence 43 3568888887643210 00 0000 0 000000001111111
Q ss_pred cccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 350 dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
+..+ ..+|+|++||+.++|++..+|+++ +|+.....+.+.++.
T Consensus 104 ~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 104 ARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp CSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred CCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 1122 239999999999999999999876 587766666665543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-12 Score=144.04 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=49.1
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccC
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQH 271 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 271 (1403)
-..++|++++|+||||||||||+++|+|..+++ ..+|.|.+++.+.... .++.++|++|+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-------------------~~~g~v~~ttr~~~~~-e~~gi~y~fq~ 70 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-------------------DTQVSVSHTTRQPRPG-EVHGEHYFFVN 70 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-------------------TEEECCCEECSCCCTT-CCBTTTBEECC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-------------------ceEEEEEecCCCCCcc-cccCceEEECC
Confidence 357899999999999999999999999987641 1578898888765431 23568899997
Q ss_pred CCCCCCCCH
Q 037155 272 DLHHGEMTV 280 (1403)
Q Consensus 272 d~~~~~lTV 280 (1403)
+..|+.+|+
T Consensus 71 ~~~f~~~~~ 79 (219)
T 1s96_A 71 HDEFKEMIS 79 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 654444333
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-12 Score=153.75 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=85.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
++.+++|+|+.| +|+||||||||||+++|+|...+.. ..|.+.+++.. ....
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-------------------~~~~~~~~~~~---t~~~ 74 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-------------------EYPGPSHRIKK---TVQV 74 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-------------------CCCSCC--------CCEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-------------------CCCCcccCCcc---ceee
Confidence 457999999998 9999999999999999999864310 11111111110 1113
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|+.|++.+++.+||.||+.|+..... . ... ....+++ +
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-------------~---------~~~--------------~~i~~~i-~- 116 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-------------S---------NCW--------------QPVIDYI-D- 116 (418)
T ss_dssp EEEECC------CEEEEEEECC---------------------------------C--------------HHHHHHH-H-
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc-------------h---------hhH--------------HHHHHHH-H-
Confidence 568999999888888999999877522100 0 000 0011111 1
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK---VLLMDEIS-TGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~---illLDEpt-sgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
..++++.+||++|||+++.+|+ ++++|||| .|||+... +.++.+.. +.++|+++
T Consensus 117 ----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVi 174 (418)
T 2qag_C 117 ----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLI 174 (418)
T ss_dssp ----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEE
T ss_pred ----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEE
Confidence 1256678889999999999999 99999999 69998773 33344432 56666666
Q ss_pred ec
Q 037155 419 LQ 420 (1403)
Q Consensus 419 ~q 420 (1403)
++
T Consensus 175 nK 176 (418)
T 2qag_C 175 AK 176 (418)
T ss_dssp ES
T ss_pred Ec
Confidence 54
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-13 Score=143.15 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC------cc-ceEE----
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV------PQ-RTCA---- 266 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~------~~-~~~~---- 266 (1403)
++++|+||||||||||+++|+|.+++.+. ..|.|.++|+++.+.. .+ +.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~------------------~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~ 64 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGL------------------RVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVV 64 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTC------------------CEEEEEC------------CHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCC------------------ceEEEEEcCcccccCCccchhHHHHHhcCCceE
Confidence 57999999999999999999999875311 2699999998754332 12 2455
Q ss_pred EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCc
Q 037155 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD 346 (1403)
Q Consensus 267 yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 346 (1403)
+++|+..++ ++| + . .+. . + ..+..++. .|+
T Consensus 65 ~~~~~~~~~----i~~---------~--~--------------------~~~-----~---a------~l~~~i~~-~l~ 94 (171)
T 2f1r_A 65 IASPVKLAF----IRR---------V--S--------------------EEE-----G---N------DLDWIYER-YLS 94 (171)
T ss_dssp EECSSEEEE----EEE---------C--C--------------------HHH-----H---T------CHHHHHHH-HTT
T ss_pred EECCCcEEE----Eec---------C--C--------------------hhh-----h---h------CHHHHHHh-hCC
Confidence 778876544 000 0 0 000 0 0 01222333 134
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEe-------EEeCCCCC---CCHHHHHHHHHHHHHHHH
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVL-------LMDEISTG---LDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~il-------lLDEptsg---LDs~t~~~i~~~L~~l~~ 408 (1403)
.+||.+++ +||||||||++||||++++|++. .-|.|..+ +|......+.+.+.+...
T Consensus 95 -g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 95 -DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp -TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred -CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 68999996 49999999999999999999873 22444322 334455677777766544
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-14 Score=169.15 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=101.2
Q ss_pred eEEEEEccCCCchHHHHHhhcCCCCC------ceeEEEEEEcCccCCh------------------hhhcceeeEe---e
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRKTG------GYIEGDIKISGYPKKQ------------------ETFARVSGYC---E 964 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~------------------~~~~~~~gyv---~ 964 (1403)
++++|+|+||||||||++.|.|...+ ....|+|.+||.+... ..+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 0135888888876432 1234456777 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--hh-hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 037155 965 QTDIHSPHVTLYESLLYSA--WL-RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA 1041 (1403)
Q Consensus 965 Q~~~~~~~lTv~e~l~~~~--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~ 1041 (1403)
|+..+.+..++.|+..++. .+ +.....+...+...++.++..+++.+..+... .+|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7666566777777765431 00 00000000001111222333444444444432 489999999999899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888875 5899999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-14 Score=151.03 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCC
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHG 276 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 276 (1403)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.+...+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------------------------~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~ 54 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------------------------LDNSAYIEGDIINHM---VVGGYRPPWESDEL 54 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------------------------SSSEEEEEHHHHHTT---CCTTCCCGGGCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------------------------cCCeEEEcccchhhh---hccccccCccchhH
Confidence 689999999999999999999973 368899988654321 23456666654444
Q ss_pred CCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccC-
Q 037155 277 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD- 355 (1403)
Q Consensus 277 ~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~- 355 (1403)
.+|+++++.+.++... . . +-....|...+.
T Consensus 55 ~~~~~~~l~~~~~~~~------------~----~---------------------------------~~~~ild~~~~~~ 85 (189)
T 2bdt_A 55 LALTWKNITDLTVNFL------------L----A---------------------------------QNDVVLDYIAFPD 85 (189)
T ss_dssp HHHHHHHHHHHHHHHH------------H----T---------------------------------TCEEEEESCCCHH
T ss_pred HHHHHHHHHHHHHHHH------------h----c---------------------------------CCcEEEeeccCHH
Confidence 5678888766422100 0 0 000000000000
Q ss_pred --ccCCCC--ChhHhhHHHHHH------HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 356 --EMRRGI--SGGQKKRVTTGE------MLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 356 --~~~rgL--SGGqkqRvsia~------aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
+..+.+ |+|++|++.++. +++.+++...+|+ +||+..... .+.++.+.. .+.++|.+.|....++
T Consensus 86 ~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~ 160 (189)
T 2bdt_A 86 EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNL 160 (189)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGH
T ss_pred HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhH
Confidence 000124 899999988877 8899998888884 899988888 888877643 3567776655414577
Q ss_pred HhhcCEEEEEcCCeEEEecChhhH
Q 037155 426 YDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 426 ~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.+.+|+|+ ++|+++..|+++-+
T Consensus 161 e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 161 NDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHHHH--HCGGGSCC------
T ss_pred HHHHHHHh--hCCcEEEeecCCch
Confidence 88899998 99999999988654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.1e-11 Score=141.30 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1022 VNGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1022 ~~~LSgGqrqRl------~IA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567889999 99999999999999999999999999974 3579999999975 5688999
Q ss_pred EEEEecCc
Q 037155 1095 LLLMKRGG 1102 (1403)
Q Consensus 1095 i~ll~~gG 1102 (1403)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998544
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-12 Score=151.81 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=98.9
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC-hhhhcceeeEee-cCCCCCCCCCHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK-QETFARVSGYCE-QTDIHSPHVTLYE 977 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-~~~~~~~~gyv~-Q~~~~~~~lTv~e 977 (1403)
+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 44999999999999999999999999999999997654 3699999985321 122456678887 54321
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
+++++...+-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233456677777888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455667666543458899999975 56778999988764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-12 Score=135.64 Aligned_cols=78 Identities=22% Similarity=0.101 Sum_probs=65.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ + .+|+|.++|.++......+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~---------------------~~G~V~~~g~~i~~~~~~~ 77 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G---------------------HQGNVKSPTYTLVEEYNIA 77 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T---------------------CCSCCCCCTTTCEEEEEET
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C---------------------CCCeEEECCEeeeeeccCC
Confidence 45899999999999999999999999999999999988 4 4799999998764211111
Q ss_pred eEEEeccCCCCCCCCCHHHHHHh
Q 037155 264 TCAYISQHDLHHGEMTVRETLDF 286 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f 286 (1403)
.|++|+..++ .+||.|++.+
T Consensus 78 --~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 78 --GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp --TEEEEEEECT-TCSCTTHHHH
T ss_pred --Ccceeccccc-cCCcHHHHHH
Confidence 2799998888 8999999965
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-11 Score=135.00 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=84.6
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCC--CCC---ceeEEEEEEcCccC-Chhh---hcceeeEeecCCCCCCCCCHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYIEGDIKISGYPK-KQET---FARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+-+++|++++|+||||||||||++.|++. ..+ +...|.+++++... .... ..+.+|+.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 45899999999999999999999999982 221 11246777776542 1110 0111121111
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTS 1053 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR-l~IA~aL~--~~P~illLDEPTs 1053 (1403)
++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++
T Consensus 88 -------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 11111100 01244444332 33333444 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcHHHH-------------------HhcCeEEEEecC
Q 037155 1054 GLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF-------------------EAFDELLLMKRG 1101 (1403)
Q Consensus 1054 gLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~-------------------~~~d~i~ll~~g 1101 (1403)
.+|+. + ...+++.|+++++ .|+|||+++|... +.. ..+|.+++|.++
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 3456666666654 4999999999653 221 168999999863
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-12 Score=142.27 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHcCCccc-ccccccCccCCCCChhHhhH-HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 339 VLKLLGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 339 il~~lgL~~~-~dt~vg~~~~rgLSGGqkqR-vsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
.++..+++.. ..+++. .+|+||||| +..+++++.+|+.+++|||||++|.....++.+.|.++..
T Consensus 132 ~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3455666643 244443 389999999 8999999999999999999999999999999999988764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=9e-14 Score=156.20 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=96.9
Q ss_pred CCeEEEEEccCCCchHHHHHhhc---CCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
++++++|+||||||||||+++|+ |... ...|++.++|.+.. ......+++++|+..+.+..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8754 23577777665432 122344566778777788889999987643110
Q ss_pred C-----CCCCcHHHHHHHHHHHHHH--cC------------CCCcccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 037155 987 L-----SSDVDTKKRKIFVDEVMEL--VE------------LKPLRDALVGLPGVNGLSTEQRKRLTIAVEL-VANPSII 1046 (1403)
Q Consensus 987 ~-----~~~~~~~~~~~~v~~~l~~--l~------------L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL-~~~P~il 1046 (1403)
. ....+... ..++.+.+. ++ +....++. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 0 00111111 112222211 11 11122222 235888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 037155 1047 FMD----EPTSGLDARAAAIVMRTVRNTVDTG 1074 (1403)
Q Consensus 1047 lLD----EPTsgLD~~~~~~i~~~l~~~~~~g 1074 (1403)
+|| |||+|||..+...+.+.++++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999886543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=145.77 Aligned_cols=136 Identities=16% Similarity=0.104 Sum_probs=93.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~ 264 (1403)
+++++|+.+++|++++|+||||||||||+++|+|.+++ .+|.|+++|..--... .++.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~---------------------~~g~I~ie~~~e~~~~~~~~~ 222 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF---------------------DQRLITIEDVPELFLPDHPNH 222 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT---------------------TSCEEEEESSSCCCCTTCSSE
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC---------------------CceEEEECCccccCccccCCE
Confidence 34999999999999999999999999999999999865 4799999985311111 3466
Q ss_pred EEEec-cCCCC--CCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 265 CAYIS-QHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 265 ~~yv~-Q~d~~--~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++|++ |++.. ++..|
T Consensus 223 v~~v~~q~~~~~~~~~~t-------------------------------------------------------------- 240 (361)
T 2gza_A 223 VHLFYPSEAKEEENAPVT-------------------------------------------------------------- 240 (361)
T ss_dssp EEEECC----------CC--------------------------------------------------------------
T ss_pred EEEeecCccccccccccC--------------------------------------------------------------
Confidence 88888 55322 12333
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.|..|+.++..+|+.+++||+.. .++.+.++.+.. ...|++.++|..
T Consensus 241 -------------------------~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~ 287 (361)
T 2gza_A 241 -------------------------AATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAG 287 (361)
T ss_dssp -------------------------HHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECS
T ss_pred -------------------------HHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCC
Confidence 44455555556789999999985 234455655543 234667777764
Q ss_pred chhHHhhcCEEEEEcCCe
Q 037155 422 APETYDLFDDIILISEGQ 439 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~ 439 (1403)
.....+||+..|..|.
T Consensus 288 --~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 288 --SCELTFERLALMVLQN 303 (361)
T ss_dssp --SHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHhcc
Confidence 3677889998887764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-12 Score=148.97 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=102.0
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 184 VQILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~--~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
.+ |+++|+.+++|++ ++|+||||||||||+++|+|.. ..|..... ......
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----------------------l~g~~~~~---~~~~~~ 80 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----------------------FEGEPATH---TQPGVQ 80 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----------------------C----------CCSSCE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----------------------ccCCcCCC---CCccce
Confidence 45 9999999999999 9999999999999999999974 12221100 001112
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||.||+.|+...... ..++ .+..+++ ...+..+.
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~-~~~~------------------~i~~~i~----------~q~~~~L~ 131 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKE-DSYK------------------PIVEFID----------AQFEAYLQ 131 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCHH-HHSH------------------HHHHHHH----------HHHHHHHH
T ss_pred EeeEEEEeecCccccccchhhhhhhhhccccc-hhhh------------------HHHHHHH----------HHHHHHHH
Confidence 35799999999888899999999876421100 0000 0011111 01222333
Q ss_pred Hc-CCc----cccccc----cc--CccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HHHh
Q 037155 342 LL-GLD----ICADTM----VG--DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ-MVHI 409 (1403)
Q Consensus 342 ~l-gL~----~~~dt~----vg--~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~-l~~~ 409 (1403)
.. ++. ...|+. +. .+..++++-.+ +.|+++|..+++|+++|||+..|.+.....+.+.+++ +..
T Consensus 132 e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~- 207 (427)
T 2qag_B 132 EELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS- 207 (427)
T ss_dssp HC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-
T ss_pred HHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-
Confidence 32 433 122332 11 11124577666 7899999999999999999999998888888888876 433
Q ss_pred CCcEE
Q 037155 410 MDVTM 414 (1403)
Q Consensus 410 ~~~tv 414 (1403)
.|..+
T Consensus 208 ~gi~I 212 (427)
T 2qag_B 208 NGVQI 212 (427)
T ss_dssp TBCCC
T ss_pred cCCcE
Confidence 34443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-13 Score=163.12 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=94.5
Q ss_pred eeeeEEEEeC--CeEEEEEccCCCchHHHHHhhcCCCCCceeE----EEEEEc----CccC--ChhhhcceeeEeecCCC
Q 037155 901 LHSVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKIS----GYPK--KQETFARVSGYCEQTDI 968 (1403)
Q Consensus 901 L~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~--~~~~~~~~~gyv~Q~~~ 968 (1403)
.+.|++.|++ |++++|+||||||||||+++|+|...+ .. |.+.++ |.+. ....+ +.++|++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4578888999 999999999999999999999997543 24 555442 2111 00011 11233322110
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-ANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~-~~P~ill 1047 (1403)
.+ ..|+.||+.+. + .+..+.. ...+|+|++|+..+++++. .+|+++|
T Consensus 235 ~~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DY-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HH-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HH-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 00 00111111000 0 0011111 1135667788888888775 5999999
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1048 MDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1048 LDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + +....+|++.++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 999 65 58999999999999988754 48899999975 3 344555555444
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=145.99 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=91.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...++.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--------------------~~g~I~~~e~~~e-~~~~~~~ 183 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--------------------KSYHIITIEDPIE-YVFKHKK 183 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--------------------SCCEEEEEESSCC-SCCCCSS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--------------------CCcEEEEecccHh-hhhccCc
Confidence 677776 8999999999999999999999999988642 2699977765543 2334456
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+||+|.. + |+
T Consensus 184 ~~v~Q~~-------------~---------------------------------------------------------g~ 193 (372)
T 2ewv_A 184 SIVNQRE-------------V---------------------------------------------------------GE 193 (372)
T ss_dssp SEEEEEE-------------B---------------------------------------------------------TT
T ss_pred eEEEeee-------------c---------------------------------------------------------CC
Confidence 6666631 0 11
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
+ . ..+ +.+|+++|..+|+++++|||+ |..+... .++. + ..|.+++.++|.. +.
T Consensus 194 ~----~-------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~--~~ 246 (372)
T 2ewv_A 194 D----T-------KSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTN--TA 246 (372)
T ss_dssp T----B-------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCC--SH
T ss_pred C----H-------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcc--hH
Confidence 0 0 113 468999999999999999999 7766433 3443 2 2467776666543 46
Q ss_pred HhhcCEEEEEc
Q 037155 426 YDLFDDIILIS 436 (1403)
Q Consensus 426 ~~~fD~IilL~ 436 (1403)
.+.+|+++.|.
T Consensus 247 ~~~~~rl~~l~ 257 (372)
T 2ewv_A 247 IDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhc
Confidence 77788876653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-11 Score=145.14 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=81.1
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCC-CceeEEEEEEc-CccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKIS-GYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
.+|++++|+||||||||||+|+|+|... . .+|+|.++ |.... .+..+.++|++|+..+++..+++|+ . +
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~---~--l- 283 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF---G--L- 283 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTC---C--C-
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh---h--h-
Confidence 3799999999999999999999999754 3 36888887 65542 2345678999999888888888883 1 1
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1039 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL 1039 (1403)
...+.++..+.+.++++.+++.+..|... .++| ||+||++||+++
T Consensus 284 --~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 --WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp --CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred --cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 12344455566788999999988887764 3799 999999999865
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-12 Score=146.99 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHh---ccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCC
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALA---GKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHD 272 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~La---G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 272 (1403)
++++++|+||||||||||+++|+ |...+ ..|+|.++|.+... ...+.+.++.|+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---------------------~~G~i~~~~~~~~~-~~~~~i~~~~~~~ 83 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---------------------SSGHFLRENIKAST-EVGEMAKQYIEKS 83 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---------------------EHHHHHHHHHHTTC-HHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---------------------cHHHHHHHHHhcCC-hHHHHHHHHHHcC
Confidence 36899999999999999999999 87654 35666666543211 1123345567777
Q ss_pred CCCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHH-hhccch----hHHHHHHHHHcCCc
Q 037155 273 LHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVA-VAGQET----SLVTDYVLKLLGLD 346 (1403)
Q Consensus 273 ~~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~-~~~~~~----~~~~~~il~~lgL~ 346 (1403)
.+++..|+.|++...... .+.+-.. .+. +... +. .+... ...... ..-.+.. ++
T Consensus 84 ~~~~~~~v~~~l~~~l~~~~~~~~il------------~g~-~~~~-~~-~~~l~~~~~~~~vi~L~~~~~~~-----l~ 143 (246)
T 2bbw_A 84 LLVPDHVITRLMMSELENRRGQHWLL------------DGF-PRTL-GQ-AEALDKICEVDLVISLNIPFETL-----KD 143 (246)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTSCEEE------------ESC-CCSH-HH-HHHHHTTCCCCEEEEEECCHHHH-----HH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEE------------ECC-CCCH-HH-HHHHHhhcCCCEEEEEECCHHHH-----HH
Confidence 778888999999764210 0000000 000 0000 00 00000 000000 0000000 11
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHH-hcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEML-VGAAKVLLMD----EISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL-~~~p~illLD----EptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
...+..++ .+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+
T Consensus 144 r~~~r~~~-----~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 144 RLSRRWIH-----PPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HHHTEEEE-----TTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HHHcCCCc-----CCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 12233343 3898 66 677 9999999999 99999999999999999988755
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-11 Score=141.22 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=83.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCC
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLH 274 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~ 274 (1403)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----------------------~g------~------~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----------------------KY------G------GEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----------------------HH------G------GGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----------------------cC------C------CCceEEEecccccc
Confidence 36789999999999999999999998742 12 0 02345666999998
Q ss_pred CCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccccccc--
Q 037155 275 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM-- 352 (1403)
Q Consensus 275 ~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~-- 352 (1403)
++. ++++|+.++..-.+.-. ..+.....+.+. ....++.+. ...+|.
T Consensus 75 ~~~-~~~~~l~~~~~~~~l~~-------------~~g~p~a~d~~~---------------l~~~l~~l~--~g~~t~~~ 123 (290)
T 1odf_A 75 LTH-EDQLKLNEQFKNNKLLQ-------------GRGLPGTHDMKL---------------LQEVLNTIF--NNNEHPDQ 123 (290)
T ss_dssp CCH-HHHHHHHHHTTTCGGGS-------------SSCSTTSBCHHH---------------HHHHHHHHT--C------C
T ss_pred CCh-HHHHHHhccccccchhh-------------hccCcchhHHHH---------------HHHHHHHhh--ccCccccC
Confidence 865 89999987521000000 001101111111 112233332 222221
Q ss_pred ----ccCccCCCCChhHhhHHHHH--HHHhcCCcEeEEeCCCCCCCHHH
Q 037155 353 ----VGDEMRRGISGGQKKRVTTG--EMLVGAAKVLLMDEISTGLDSST 395 (1403)
Q Consensus 353 ----vg~~~~rgLSGGqkqRvsia--~aL~~~p~illLDEptsgLDs~t 395 (1403)
+. .....+||||+||+.+| +++ +|+|+|+||+++++|+..
T Consensus 124 ~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 124 DTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 22 23367999999999997 555 999999999999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-12 Score=150.77 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=96.3
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
-++|++++++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999642 23333321 12233555555431 0111111110
Q ss_pred HHHhhhCCCCCcHHHH--HHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 981 YSAWLRLSSDVDTKKR--KIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~--~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+............... .+.++.++..+++. +. ....||+|++||+.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111100 00112222233332 11 1336999999999999999999999999 999997
Q ss_pred HHHHHHHHHHH-HHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1059 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1059 ~~~~i~~~l~~-~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
.+ ..++.+++ +.+.|.+++.+|......+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 76 44444444 44457777665543222455555443
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-11 Score=144.95 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=66.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-------
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF------- 259 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~------- 259 (1403)
-+++|+.+++|++++|+||||||||||++.|+|++.+ .+|+|.++|.+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~---------------------~~G~V~l~g~D~~r~aa~eQL~ 341 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ---------------------QGKSVMLAAGDTFRAAAVEQLQ 341 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH---------------------TTCCEEEECCCTTCHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh---------------------cCCeEEEecCcccchhhHHHHH
Confidence 3689999999999999999999999999999999854 479999987654321
Q ss_pred C--ccceEEEeccCCCCCCCCCHHHHHHhh
Q 037155 260 V--PQRTCAYISQHDLHHGEMTVRETLDFS 287 (1403)
Q Consensus 260 ~--~~~~~~yv~Q~d~~~~~lTVrE~l~f~ 287 (1403)
. .++.++|++|+...++.+||++++.++
T Consensus 342 ~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 342 VWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 0 145689999998888888999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-12 Score=134.20 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=65.6
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+++.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.+.... .. ...|++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~-~~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YN-IAGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EE-ETTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-cc-CCCcceeccccc-cCCc
Confidence 4456899999999999999999999999999999999966 3 369999999876421 11 113899988787 8999
Q ss_pred HHHHHH
Q 037155 976 YESLLY 981 (1403)
Q Consensus 976 ~e~l~~ 981 (1403)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=139.42 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1023 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|||++ ...+.||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 369999999999999999 58999999999999999999999999999876688999999985 467789999998
Q ss_pred ec
Q 037155 1099 KR 1100 (1403)
Q Consensus 1099 ~~ 1100 (1403)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-11 Score=148.92 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=100.0
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hh--hcceeeEeecCCCCCCC
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ET--FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 972 (1403)
+++|+.+++|++++|+|+||||||||+++|+|.... ..|+|.++|.+... .. .++.++|++|+..+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 578889999999999999999999999999996532 24889998765432 11 24568999999888888
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMDE 1050 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~-~~P~-illLDE 1050 (1403)
+|+++++.+...- ..+. -+++..|+.+... .+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~--~~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKAR--NIDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHT--TCSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhc--CCCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 9999999876421 1110 0112222221111 12223457888888664 4573 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1082 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1082 (1403)
||+|.|.. +.++.+.+ .|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886654 22333332 4789999999
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-10 Score=120.76 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 037155 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 1085 (1403)
Q Consensus 1040 ~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~~ 1085 (1403)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999998877888 888999643
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-12 Score=136.41 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=84.3
Q ss_pred eEEEEEccCCCchHHHHHhhcCCCCC-ceeEEEEEEcCccCC------hhhhc-ceee----EeecCCCCCCCCCHHHHH
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKK------QETFA-RVSG----YCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~e~l 979 (1403)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 57999999999999999999996432 233699999998732 22344 3567 788876543 1
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHH-cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMEL-VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 1051 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il-------lLDEP 1051 (1403)
+.. ..+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 75 ------~~~---~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV---SEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC---CHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC---Chh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 100 011 11124555555 43 24677764 59999999999999999999772 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 037155 1052 TSG---LDARAAAIVMRTVRNTVDTGR 1075 (1403)
Q Consensus 1052 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1075 (1403)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233444566666666555543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=127.80 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=42.1
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCchh------------------HH
Q 037155 377 GAAKVLLMDEISTGLDSS-------T-----TFQICKFLKQMVHIMDVTMIVALLQPAPE------------------TY 426 (1403)
Q Consensus 377 ~~p~illLDEptsgLDs~-------t-----~~~i~~~L~~l~~~~~~tvii~~~q~~~~------------------~~ 426 (1403)
.+|+++++|||++.+|+. + ..++++.|+++++..+.|++++.|..... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 3 34567777777777788888765532210 22
Q ss_pred hhcCEEEEEcCC
Q 037155 427 DLFDDIILISEG 438 (1403)
Q Consensus 427 ~~fD~IilL~~G 438 (1403)
..+|.+++|+.|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 379999999865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-11 Score=141.51 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=78.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc-ccchhhcccchhhhhhhccCCCcceEEEEC-CccCCCCCccce
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWKTEQASGKITYC-GHELNEFVPQRT 264 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~-G~~~~~~~~~~~ 264 (1403)
+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |..... ...+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---------------------~~G~I~~~~G~g~~t-t~~~~ 262 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---------------------LTNDVSNVSGLGQHT-TTAAR 262 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---------------------CCC--------------CCCE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---------------------ccCCccccCCCCccc-eEEEE
Confidence 4555553 4799999999999999999999999875 4 57999887 654422 23467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++|++|+..+++..||+|+ +. .+. .+.+ . ....+.+++.+|
T Consensus 263 i~~v~q~~~l~dtpgv~e~---~l--~~l----------~~~e----------~--------------~~~~~e~l~~~g 303 (358)
T 2rcn_A 263 LYHFPHGGDVIDSPGVREF---GL--WHL----------EPEQ----------I--------------TQGFVEFHDYLG 303 (358)
T ss_dssp EEECTTSCEEEECHHHHTC---CC--CCC----------CHHH----------H--------------HHTSGGGGGGTT
T ss_pred EEEECCCCEecCcccHHHh---hh--cCC----------CHHH----------H--------------HHHHHHHHHHcC
Confidence 9999999988988899984 21 110 0000 0 011234567788
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHH
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEML 375 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL 375 (1403)
+.+..|..+.+ +| ||+||++||+++
T Consensus 304 l~~f~~~~~~~-----lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 304 HCKYRDCKHDA-----DP-GCAIREAVENGA 328 (358)
T ss_dssp CSSSTTCCSSS-----CT-TCHHHHHHHHTS
T ss_pred CchhcCCCccc-----CC-HHHHHHHHHhcC
Confidence 87777777654 99 999999999764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-13 Score=156.72 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=104.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hhcceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TFARVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~ 969 (1403)
...+|+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35689999999999999999999999999999999985432 247788887654321 234568999998877
Q ss_pred CCCC------------CHHHHHHHH-H------------------hhhCCC-------CCc-HHHHHHHHHHHHHHcCCC
Q 037155 970 SPHV------------TLYESLLYS-A------------------WLRLSS-------DVD-TKKRKIFVDEVMELVELK 1010 (1403)
Q Consensus 970 ~~~l------------Tv~e~l~~~-~------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~L~ 1010 (1403)
++.. ++.|.+... . .+.... +.. ..........+++...+-
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 6532 123332110 0 000000 000 000000000111211111
Q ss_pred --CcccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1011 --PLRDALVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1011 --~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++..
T Consensus 199 vlNK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AVNKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEchhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111210 113479999999999999987 688887 999999999999999988653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-11 Score=143.38 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---------cce
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP---------QRT 264 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~---------~~~ 264 (1403)
.++|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+...... +..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~---------------------~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN---------------------HGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH---------------------TTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh---------------------cCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 478999999999999999999999999864 47999999987643221 123
Q ss_pred EEEeccCCCCCCCCCHHHHHHhh
Q 037155 265 CAYISQHDLHHGEMTVRETLDFS 287 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~ 287 (1403)
+.|++|...+.|.+||+||+.++
T Consensus 185 v~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 185 VKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp CEEECCCTTCCHHHHHHHHHHHH
T ss_pred ceEEeccccCCHHHHHHHHHHHH
Confidence 56999999999999999999764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-12 Score=146.58 Aligned_cols=182 Identities=15% Similarity=0.079 Sum_probs=107.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+ .+|+|.+.|.+....
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~---------------------~~g~v~i~~~d~~~~~~~~ 100 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA---------------------AGHKVAVLAVDPSSTRTGG 100 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH---------------------TTCCEEEEEECGGGGSSCC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh---------------------CCCEEEEEEEcCccccccc
Confidence 3589999999999999999999999999999999998754 479999988765321
Q ss_pred ---CccceEEEeccCCCCCCCC------------CHHHHHHhh----ccc---ccccchhhHHHHhhHHHHhcCC---CC
Q 037155 260 ---VPQRTCAYISQHDLHHGEM------------TVRETLDFS----GRC---LGVGTRYELLAELSRREKQQGI---KP 314 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~~~~~l------------TVrE~l~f~----~~~---~~~~~~~~~~~~~~~~e~~~~i---~~ 314 (1403)
..++.++|++|++..++.. +++|.+... ..+ ..+|-... +.. .+...+. ..
T Consensus 101 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~~-v~~~~d~vl~v~ 176 (337)
T 2qm8_A 101 SILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ETA-VADLTDFFLVLM 176 (337)
T ss_dssp CSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHH-HHTTSSEEEEEE
T ss_pred chHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hhh-HHhhCCEEEEEE
Confidence 1246789999998776532 133332110 000 00000000 000 0000000 00
Q ss_pred Cch-HHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhc------CCcEeEEeCC
Q 037155 315 DPE-IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------AAKVLLMDEI 387 (1403)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~------~p~illLDEp 387 (1403)
+.. -+.. + . .......+...+.+ +..|..- ...+|+|++|++..+.+++. .|++++
T Consensus 177 d~~~~~~~-~-----~--i~~~i~~~~~ivvl-NK~Dl~~----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~---- 239 (337)
T 2qm8_A 177 LPGAGDEL-Q-----G--IKKGIFELADMIAV-NKADDGD----GERRASAAASEYRAALHILTPPSATWTPPVVT---- 239 (337)
T ss_dssp CSCC--------------CCTTHHHHCSEEEE-ECCSTTC----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----
T ss_pred cCCCcccH-H-----H--HHHHHhccccEEEE-EchhccC----chhHHHHHHHHHHHHHHhccccccCCCCCEEE----
Confidence 000 0000 0 0 00001111122233 2223110 13479999999999999887 588877
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 037155 388 STGLDSSTTFQICKFLKQMV 407 (1403)
Q Consensus 388 tsgLDs~t~~~i~~~L~~l~ 407 (1403)
+|++|......+++.|.+..
T Consensus 240 ~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 240 ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-13 Score=153.56 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-----------------
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV----------------- 260 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~----------------- 260 (1403)
++++|+|+|||||||||+.|+|..+. .++ .-..+..|+|.++|.++....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~-~~~------------aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~ 71 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG-YKI------------AVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSN 71 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC-CCE------------EEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC-CcE------------EEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccH
Confidence 68999999999999999999998521 000 000135789989887664331
Q ss_pred -ccceEEEe---ccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 -PQRTCAYI---SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 -~~~~~~yv---~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..+.++++ +|+..+++..||.||..++... .....+.. +++. . .....
T Consensus 72 ~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~---------~~~~------~------~~~~l 123 (318)
T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFS---------HEVL------C------QRYLL 123 (318)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHH---------SHHH------H------HHEEE
T ss_pred HHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhc---------Cccc------c------CeEEE
Confidence 12345666 5665555667777776553110 00000000 0000 0 00000
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.++..+++.+..+... .+|||||||+..+++++.+|+++ ||| .++.+.++++. .+.++++
T Consensus 124 ~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~ 184 (318)
T 1nij_A 124 DGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYT 184 (318)
T ss_dssp EEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEE
T ss_pred CCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEE
Confidence 11122333433333332 38999999998888888888876 888 67778887764 4677777
Q ss_pred EEecCc
Q 037155 417 ALLQPA 422 (1403)
Q Consensus 417 ~~~q~~ 422 (1403)
+.|.+.
T Consensus 185 ~sh~~~ 190 (318)
T 1nij_A 185 VTHGDI 190 (318)
T ss_dssp CCSSCC
T ss_pred ecccCC
Confidence 766543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-11 Score=140.46 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=93.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hhcce--eeEeecCCCCCCCCCHHHHH
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TFARV--SGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~lTv~e~l 979 (1403)
++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++. +.|++|...+.|.++|+|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 68999999999999999999999996432 258899988775321 12333 45999998888999999999
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.+..... .+. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 205 ~~~~~~~--~d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~---- 255 (328)
T 3e70_C 205 QHAKARG--IDV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN---- 255 (328)
T ss_dssp HHHHHHT--CSE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT----
T ss_pred HHHHhcc--chh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH----
Confidence 8753211 000 01111222221111 1223334889999888888999555 43
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecC
Q 037155 1060 AAIVMRTVRNTV-DTGRTVVCTIHQ 1083 (1403)
Q Consensus 1060 ~~~i~~~l~~~~-~~g~tvi~~~H~ 1083 (1403)
.+++.++.+. ..+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 4445555554 348999999995
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-11 Score=144.20 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=47.7
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
.+|+||+||+.+|++|...|.++++ +++|...+ ...+.+++..+..+.+++.+.......+.++++.
T Consensus 252 ~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 252 TLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 4999999999999999999999999 99999877 5555555554444556665443333334444433
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-11 Score=138.29 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=83.5
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHh----
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAW---- 984 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~---- 984 (1403)
+++.++||.|++|||||||.+.|++.... .| . -.+.+.+|+|++.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999986431 11 0 02345666999988764 78888877521
Q ss_pred hh---CCCCCcHHHHHHHHHHHHHHcCCCC--c--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 037155 985 LR---LSSDVDTKKRKIFVDEVMELVELKP--L--RDALVGLPGVNGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 985 lr---~~~~~~~~~~~~~v~~~l~~l~L~~--~--~~~~vg~~~~~~LSgGqrqRl~IA--~aL~~~P~illLDEPTsgL 1055 (1403)
+. .+...+ .+...+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 223455566554320 0 0111111 1246999999999997 555 99999999999999
Q ss_pred CHHH
Q 037155 1056 DARA 1059 (1403)
Q Consensus 1056 D~~~ 1059 (1403)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-10 Score=120.62 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=42.3
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1039 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1039 L~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
.+.+|++|+||||++ ++|+.....+.+++++..++|+++|++||.+.
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 355999999999995 99999999999999998878999999999875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=129.05 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=63.8
Q ss_pred CCCChhHhhHH------HHHHHHhcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 359 RGISGGQKKRV------TTGEMLVGA-AKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 359 rgLSGGqkqRv------sia~aL~~~-p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
..+|||||||+ ++|++++++ |++|+|||||+|||+.++..+.+.|+++.. +.+++++.|++ ++...+|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCE
Confidence 46999999988 567899999 999999999999999999999999988642 45788777765 46789999
Q ss_pred EEEEc
Q 037155 432 IILIS 436 (1403)
Q Consensus 432 IilL~ 436 (1403)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=131.14 Aligned_cols=148 Identities=22% Similarity=0.238 Sum_probs=87.0
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhh--cCCCC---CceeEEEEEEcCccC-Chhh---hcceeeEeecCCCCCCCCCHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYIEGDIKISGYPK-KQET---FARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+-|++|++++|+||||||||||++.| .+..+ ++.-.+.+++++... .... ..+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence 45899999999999999999999954 45432 111235677777542 1110 0111121111
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST-EQRKRLTIAVELV--ANPSIIFMDEPTS 1053 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg-GqrqRl~IA~aL~--~~P~illLDEPTs 1053 (1403)
++++.+- +. ...+. .+.+.+.-+.+++ .+|+++++||||+
T Consensus 242 -------------------------~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 -------------------------DALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp -------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred -------------------------hHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1111111 10 01222 2333444344443 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCeEEEEecC
Q 037155 1054 GLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1054 gLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~i~ll~~g 1101 (1403)
.+|+... ..+++.|++++++ |+|||+++|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9997533 6678888888754 999999999821 1235667988888763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-13 Score=164.14 Aligned_cols=177 Identities=12% Similarity=0.038 Sum_probs=104.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCC---------
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI--------- 968 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~--------- 968 (1403)
..+++++++.+++|+.++|+|||||||||||++|+|..++. +|.|.+.|.+.-.......++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 45789999999999999999999999999999999976543 6888998865211111233444444332
Q ss_pred -------------CCCCCCHHHHHHHHHhhhCCCC-CcHHHHHHHHHHHHHHcCCCC---------cccccccCCCCCCC
Q 037155 969 -------------HSPHVTLYESLLYSAWLRLSSD-VDTKKRKIFVDEVMELVELKP---------LRDALVGLPGVNGL 1025 (1403)
Q Consensus 969 -------------~~~~lTv~e~l~~~~~lr~~~~-~~~~~~~~~v~~~l~~l~L~~---------~~~~~vg~~~~~~L 1025 (1403)
+...++..|++.+...+..... ...- ....+.++++.+...+ ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 1234555554433222211100 0000 0001233344433311 0111000 01247
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcHHHHHhc
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1092 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 1092 (1403)
|+|||||++++. + | |+|||+.+...+++.|.++...|+|+++ ++|+++ ++...+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999887751 2 7 9999998877777777777666888875 889765 344444
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-12 Score=153.26 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=95.8
Q ss_pred cccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcce
Q 037155 887 EMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARV 959 (1403)
Q Consensus 887 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~ 959 (1403)
.+++.++.++...+|+++ + .++|++++|+|||||||||||++|+|...+ .+|+|.+.|.+... ....+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccc
Confidence 344555555556688888 4 489999999999999999999999996542 25788888776531 112334
Q ss_pred eeEee---------cCCCC--CCC----CCHHHHHHHHHhhhC----CCCCcHHHHHHHHHHHHHHcCCCCcccccccCC
Q 037155 960 SGYCE---------QTDIH--SPH----VTLYESLLYSAWLRL----SSDVDTKKRKIFVDEVMELVELKPLRDALVGLP 1020 (1403)
Q Consensus 960 ~gyv~---------Q~~~~--~~~----lTv~e~l~~~~~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 1020 (1403)
+|+.+ |++.. ... .|+.+++.++..-.. ....+... +.+.+..+++.+.. .
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~----~i~rL~~lgl~~~~--~---- 290 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG----AVTRLRDMGIEPFL--I---- 290 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH----HHHHHHHHTCCHHH--H----
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH----HHHHHHHcCCcHHH--H----
Confidence 55544 87654 233 588888877542110 00111111 22346677886543 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
...|||||+|| ||++|+.+|++..-
T Consensus 291 -~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 -SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp -HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred -HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 23699999999 99999999998763
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-11 Score=143.24 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=87.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
..+|+++ + .++|++++|+|||||||||||++|+|.+++ .+|+|.+.|.++....
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~---------------------~~g~I~~~ed~ie~~~~~~ 212 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS---------------------SERNILTVEDPIEFDIDGI 212 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC---------------------TTSCEEEEESSCCSCCSSS
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC---------------------CCCEEEEecccchhccCCc
Confidence 4578888 4 489999999999999999999999998854 4799999887663211
Q ss_pred ----ccceEEEec---------cCCCC--CCC----CCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHH
Q 037155 261 ----PQRTCAYIS---------QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321 (1403)
Q Consensus 261 ----~~~~~~yv~---------Q~d~~--~~~----lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~ 321 (1403)
..+.+++.+ |++.. +++ .|+++++.++..-+..-.. + .. .+
T Consensus 213 ~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------l---------h~-~~---- 272 (418)
T 1p9r_A 213 GQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------L---------HT-NT---- 272 (418)
T ss_dssp EEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------E---------CC-SS----
T ss_pred ceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------c---------ch-hh----
Confidence 112344433 77644 344 5788887764211100000 0 00 00
Q ss_pred HHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeE
Q 037155 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLL 383 (1403)
Q Consensus 322 ~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~ill 383 (1403)
.....+ .+..+|++... .. ..|||||+|| ||++|+.+|++..
T Consensus 273 ----------~~~~i~-rL~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 273 ----------AVGAVT-RLRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----------SHHHHH-HHHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----------HHHHHH-HHHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccC
Confidence 001112 34567776542 33 3499999999 9999999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-11 Score=135.88 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=79.6
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChh--hhc-ceeeEeecCCCCC-----CCCCHHH
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQE--TFA-RVSGYCEQTDIHS-----PHVTLYE 977 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~e 977 (1403)
.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 6553 4689998 88765422 112 2589999998653 68899 8
Q ss_pred HH--HHHH---h-hhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHH
Q 037155 978 SL--LYSA---W-LRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVE 1038 (1403)
Q Consensus 978 ~l--~~~~---~-lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~a 1038 (1403)
++ .|.. . ++........+....++++++.++|.+ ..+.... .|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 87 4541 0 111110111122345889999999986 5666543 699989999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-10 Score=129.84 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=78.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCc--c-ceEEEe
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVP--Q-RTCAYI 268 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~--~-~~~~yv 268 (1403)
.+|++++|+||||||||||+|+|+ ..++ .+|+|.+ +|+..+.... + +.+||+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~---------------------~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v 220 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEEL---------------------RTQEVSEKTERGRHTTTGVRLIPFGKGSFV 220 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCC---------------------CCSCC---------CCCCEEEEEETTTEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhC---------------------cccccccccCCCCCceeeEEEEEcCCCcEE
Confidence 458999999999999999999999 7654 5799999 8876654321 1 258999
Q ss_pred ccCCCCC-----CCCCHHHHH--HhhcccccccchhhHHHHh-hHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 269 SQHDLHH-----GEMTVRETL--DFSGRCLGVGTRYELLAEL-SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 269 ~Q~d~~~-----~~lTVrE~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
+|++.+. +.+|+ |++ .|. ... ++ |+ -.+.... .+....++..+
T Consensus 221 ~d~pg~~~~~l~~~lt~-e~l~~~f~-~~~----------~~~c~---~~~~~~~--------------~e~~~~v~~~l 271 (302)
T 2yv5_A 221 GDTPGFSKVEATMFVKP-REVRNYFR-EFL----------RYQCK---YPDCTHT--------------NEPGCAVKEAV 271 (302)
T ss_dssp ESSCCCSSCCGGGTSCG-GGGGGGCG-GGH----------HHHHH---STTCCSS--------------SCTTCHHHHHH
T ss_pred EECcCcCcCcccccCCH-HHHHHHHH-HHH----------HccCC---CCCCCCC--------------CCCCCHHHHHH
Confidence 9998543 68899 888 443 100 00 00 0000000 01122456678
Q ss_pred HHcCCcc-cccccccCccCCCCChhHhhHHHHHH
Q 037155 341 KLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGE 373 (1403)
Q Consensus 341 ~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~ 373 (1403)
+.+||++ .++..... |||.++|++.|||
T Consensus 272 ~~~~L~~~~~~~~~~~-----ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 272 KNGEISCERYKSYLKI-----IKVYLEEIKELCR 300 (302)
T ss_dssp HTTSSCHHHHHHHHHH-----TTCCCTTHHHHSS
T ss_pred HcCCCCHHHHHHHHHH-----HHHHHHHHHHHhc
Confidence 8899986 67766654 9998899999986
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-09 Score=127.31 Aligned_cols=164 Identities=15% Similarity=0.036 Sum_probs=84.6
Q ss_pred EEEEccCCCchHHHHHhhcCC-CCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDV 991 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~ 991 (1403)
+.|.||||+|||||+++|+|. ..+ ..|.+.++|.+... ......+++++|.+.+..... + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 899999999999999999993 332 25788888765432 112355788888664321110 0 0 000
Q ss_pred cHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 992 DTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071 (1403)
Q Consensus 992 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~ 1071 (1403)
... .+.+.++.+......+... .||| +..+|+++++|||++ ||..+...+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111111110 2565 788999999999999 99999999999999864
Q ss_pred hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcchhHHHHHHHh
Q 037155 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEA 1123 (1403)
Q Consensus 1072 ~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~ 1123 (1403)
.++++|+++|+++.......+| ...+...|+.. +++.++...
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHHH
Confidence 3789999999976311122222 24555666542 345555543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-11 Score=149.83 Aligned_cols=85 Identities=14% Similarity=0.147 Sum_probs=65.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+++++++.+++|+.++|+|||||||||||++|+|.+++ .+|.|+++|..--......
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~---------------------~~giitied~~E~~~~~~~ 305 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP---------------------DAKVVSIEDTREIKLYHEN 305 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT---------------------TCCEEEEESSCCCCCCCSS
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC---------------------CCCEEEEcCcccccCCCCC
Confidence 3578999999999999999999999999999999999864 4799999886421222234
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGR 289 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~ 289 (1403)
.++++.|........|..+.+.-+.|
T Consensus 306 ~v~~~~r~~~~~~~~~~~~~l~~~LR 331 (511)
T 2oap_1 306 WIAEVTRTGMGEGEIDMYDLLRAALR 331 (511)
T ss_dssp EEEEECBCCSSSCCBCHHHHHHTTGG
T ss_pred eEEEEeecccccCCcCHHHHHHHhhc
Confidence 57777776554445688888876654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-09 Score=114.38 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=39.3
Q ss_pred hcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 376 VGAAKVLLMDEIST-GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 376 ~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
+.+|++|+||||++ ++|+.....+.+.+..... .++++|++.+.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 45899999999985 9999999999998887654 478888888777644
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-12 Score=142.08 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=93.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
..+++++++.+++| ++|+||||||||||+++|+|.+. .|.|.++|.++.....
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----------------------~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----------------------LNFISVKGPELLNMYVGE 87 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----------------------CEEEEEETTTTCSSTTHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----------------------CCEEEEEcHHHHhhhhhH
Confidence 45899999999999 99999999999999999999863 3789999977644221
Q ss_pred -cceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 -QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 -~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.+.+++++|+. .+.|.+++.|++.+.+..++. . +. +
T Consensus 88 ~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~--------------~--------~~------------------~-- 125 (274)
T 2x8a_A 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--------------R--------ET------------------G-- 125 (274)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC--------------C--------cc------------------h--
Confidence 24566777653 445555666666543211000 0 00 0
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEIST------------GLDSSTTFQICKFL 403 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEpts------------gLDs~t~~~i~~~L 403 (1403)
.+....+..+ ..|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 126 ----~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 126 ----ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp -----CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 0111112222 239999999999999999999975 88864 23666666666543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-10 Score=126.88 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=27.6
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999853
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=117.22 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=46.4
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEecCc------------------hhHH
Q 037155 377 GAAKVLLMDEISTGLDSSTT------------FQICKFLKQMVHIMDVTMIVALLQPA------------------PETY 426 (1403)
Q Consensus 377 ~~p~illLDEptsgLDs~t~------------~~i~~~L~~l~~~~~~tvii~~~q~~------------------~~~~ 426 (1403)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 47999999999999997543 56888899998888999998877511 2235
Q ss_pred hhcCEEEEEcCCe
Q 037155 427 DLFDDIILISEGQ 439 (1403)
Q Consensus 427 ~~fD~IilL~~G~ 439 (1403)
..+|.++.|+.|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6689999887753
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-11 Score=134.31 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHH-HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcC
Q 037155 371 TGE-MLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISE 437 (1403)
Q Consensus 371 ia~-aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~ 437 (1403)
.++ +++.+|++++|||+|+++|..+...|.+.|....+... +.| +. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~------~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME------SSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT------GGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------Hhh---cc-CCceEEEECCC
Confidence 455 67889999999999999999999999999987765321 111 12 67899988764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-11 Score=146.94 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=115.4
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCC----------CCceeEEEEEEcCccCCh----hhhccee---eEeecCCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYIEGDIKISGYPKKQ----ETFARVS---GYCEQTDIH 969 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~ 969 (1403)
.+++|..++|+|+||||||||+++|+|.. +..+..|.+.++|..... ...++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45789999999999999999999999932 112457999998843211 0111222 467777777
Q ss_pred CCCCCHHHHH--HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CE
Q 037155 970 SPHVTLYESL--LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP--SI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P--~i 1045 (1403)
.+..+..|.+ .|.+.++.. +.++..++..+ + ..+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 7777766655 444433321 11111122211 1 1122355442 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCeEE-EEecCc-EEEEecCCCc
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELL-LMKRGG-RVIYAGPLGR 1112 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~i~-ll~~gG-~~~~~g~~~~ 1112 (1403)
+++|||+.++|+......++.++.. .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 9999999999999999999999998 76788865 99875 6788999998 7765 6 7777776643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-11 Score=130.48 Aligned_cols=148 Identities=12% Similarity=0.085 Sum_probs=78.6
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCC-ceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|......... ..+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~~~~~~~-------------------~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PRGLLPRK-------------------G 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GGTCGGGT-------------------T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-HhcccccC-------------------C
Confidence 478999999999999999999999996431 22346666666544321111 01100000 0
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1065 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA-~aL~~~P~illLDEPTsgLD~~~~~~i~~ 1065 (1403)
.+...+... ..+.+..+...+..+......+ .++|+||+||+++| ++++.++.++++|||.- .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 000011111 1222222211111111222222 25799999999988 77788888877888731 1
Q ss_pred HHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1066 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
.+.+. --.++++.|..+..+...+.|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 11222 236777777655434444444
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=103.66 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=33.3
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEEEecCch
Q 037155 376 VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT-MIVALLQPAP 423 (1403)
Q Consensus 376 ~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t-vii~~~q~~~ 423 (1403)
+.+|++|++|||++ +|...+..+.+.+..+... +++ +|++.+.+..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~ 127 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHH
Confidence 45789999999998 6655588888888877653 566 6666654443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-11 Score=144.77 Aligned_cols=180 Identities=12% Similarity=0.114 Sum_probs=114.4
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhcccc-ccchhhcccchhhhhhhccCCCcceEEEECCccCCC----CCccceE--
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----FVPQRTC-- 265 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----~~~~~~~-- 265 (1403)
.+++|..++|+|+||||||||+|+|+|... .... .-+-...+.+|.|.++|..++. +.+++.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~ 85 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPA 85 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------CCceeecceeeeeeeCCcchhhhhhhcccccccCc
Confidence 567899999999999999999999999421 0000 0000124578999998853211 2233443
Q ss_pred -EEeccCCCCCCCCCHHHHH--HhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 266 -AYISQHDLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 266 -~yv~Q~d~~~~~lTVrE~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++.+.+-+...++..|++ .|-+.++. +|.++..
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~-------------------------------------------~d~il~V 122 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRA-------------------------------------------VDAIYQV 122 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTT-------------------------------------------CSEEEEE
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHH-------------------------------------------HHHHHHH
Confidence 4677777777766665544 22111100 0001111
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEe
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAA--KVLLMDEISTGLDSSTTFQICKFLKQM-VHIMDVTMIVALL 419 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l-~~~~~~tvii~~~ 419 (1403)
+.... |.. ...+||+. +| +++++|||+.++|.......++.++.. .+ .+.|++ .
T Consensus 123 vd~~~--d~~-----i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---s 179 (392)
T 1ni3_A 123 VRAFD--DAE-----IIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---M 179 (392)
T ss_dssp EECCC--TTC-----SSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---H
T ss_pred Hhccc--cce-----eeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---c
Confidence 11111 222 23367653 88 999999999999999999999988876 43 455542 4
Q ss_pred cCchhHHhhcCEEE-EEcCC-eEEEecChhh
Q 037155 420 QPAPETYDLFDDII-LISEG-QIVYHGPRDN 448 (1403)
Q Consensus 420 q~~~~~~~~fD~Ii-lL~~G-~iv~~G~~~~ 448 (1403)
|...++.+++|++. +|.+| ++++.|+.++
T Consensus 180 h~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 180 KAKKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred ccHHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 45567888999999 99999 9888776543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-10 Score=135.26 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=96.7
Q ss_pred ceeeeceEEEEeCC-------eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccC
Q 037155 184 VQILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL 256 (1403)
Q Consensus 184 ~~iL~~vs~~i~~G-------e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~ 256 (1403)
..++++++..+++| +.++|.||||+|||||+++|+|.+.... .+.+|.+..++.++
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~-----------------~~~sg~~~~~~~~l 93 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI-----------------HVTSGPVLVKQGDM 93 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE-----------------EEEETTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE-----------------EEEechHhcCHHHH
Confidence 35777888888776 8899999999999999999999873211 11355555554433
Q ss_pred CCC---CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchh
Q 037155 257 NEF---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETS 333 (1403)
Q Consensus 257 ~~~---~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 333 (1403)
... ..++.+.++.|.+.+.+ ++.|++.......+. .+..... ...
T Consensus 94 ~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~-----------------~i~~~~~-------------~~~ 141 (334)
T 1in4_A 94 AAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQI-----------------DIMIGKG-------------PSA 141 (334)
T ss_dssp HHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCC-----------------CC---------------------
T ss_pred HHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhccc-----------------ceeeccC-------------ccc
Confidence 211 12356999999877665 788888432111100 0000000 000
Q ss_pred HHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 334 LVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 334 ~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
..++..+..++|.. +++.++. ||+|+|||+.++ .+||+.+..++.+.|++.++..+
T Consensus 142 ~~i~~~l~~~~li~-at~~~~~-----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 142 KSIRIDIQPFTLVG-ATTRSGL-----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp -------CCCEEEE-EESCGGG-----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCeEEEE-ecCCccc-----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 01122334455544 6666654 999999998554 78899999999999998876544
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=119.75 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=35.1
Q ss_pred HhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 375 LVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 375 L~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+.++|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence 778999999999999 99999999999998753 2567777777664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.7e-09 Score=122.13 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=50.0
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCc---cceEE
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVP---QRTCA 266 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~ 266 (1403)
.+.+|++++|+||||||||||||+|+|...+ .+|+|.+ +|++++.... .+.++
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~---------------------~~G~i~~~~~~g~~~t~~~~~~~~~~~g 223 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL---------------------RVSEVSEKLQRGRHTTTTAQLLKFDFGG 223 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC---------------------C-------------CCCSCCEEECTTSC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc---------------------cccceecccCCCCCceeeeEEEEcCCCC
Confidence 3457999999999999999999999998864 5799999 8877654321 13589
Q ss_pred EeccCCC----------------CCCCCCHHHHHHhh
Q 037155 267 YISQHDL----------------HHGEMTVRETLDFS 287 (1403)
Q Consensus 267 yv~Q~d~----------------~~~~lTVrE~l~f~ 287 (1403)
||.|++. ++|++|+ ||+.|.
T Consensus 224 ~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 224 YVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp EEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSST
T ss_pred EEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCC
Confidence 9999974 5888899 988885
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-10 Score=128.56 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=57.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCccceEEEeccC
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVPQRTCAYISQH 271 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~ 271 (1403)
++|++++|+||||||||||+++|+|.+.. .+.+|+|.+ +|..... ..++.++++ |+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~-------------------~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~ 136 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSR-------------------WPEHRRVELITTDGFLHPN-QVLKERGLM-KK 136 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTT-------------------STTCCCEEEEEGGGGBCCH-HHHHHHTCT-TC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-------------------CCCCCeEEEEecCCccCcH-HHHHhCCEe-ec
Confidence 88999999999999999999999998751 024799999 8865432 123457888 77
Q ss_pred CCCCCCCCHHHHHHhhc
Q 037155 272 DLHHGEMTVRETLDFSG 288 (1403)
Q Consensus 272 d~~~~~lTVrE~l~f~~ 288 (1403)
..+++.+|+.+++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 137 KGFPESYDMHRLVKFVS 153 (308)
T ss_dssp TTSGGGBCHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHH
Confidence 77778889999997753
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=9e-12 Score=135.14 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1035 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1035 IA~-aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+++ +++.+|++++|||||+++|..+...|.+.|.+..+. +...|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888899999999999999999998887542 2334621 4689887764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-11 Score=139.18 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=87.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---hhcceeeEeecCC-CCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---TFARVSGYCEQTD-IHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~ 972 (1403)
...+++++++.+++| ++|+||||+|||||+++|+|.... |.+.++|.+.... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999996542 6889998765321 2234577888764 44566
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+++.|++...+..+.. .. .. .+....+... ..|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r~~-----~~----~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD-----RE----TG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccCC-----Cc----ch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 6666666542211100 00 00 1122233332 259999999999999999999975 8886
Q ss_pred C
Q 037155 1053 S 1053 (1403)
Q Consensus 1053 s 1053 (1403)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-09 Score=121.92 Aligned_cols=118 Identities=20% Similarity=0.201 Sum_probs=65.6
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChh-hhcce-eeEeecCCCCCC----CCCHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQE-TFARV-SGYCEQTDIHSP----HVTLY 976 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~lTv~ 976 (1403)
+.+.+|++++|+||||||||||+|+|+|.... .+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 34568999999999999999999999997542 4688888 77654321 12222 799999987665 6899
Q ss_pred HHHH--HHHh------hhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 977 ESLL--YSAW------LRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 977 e~l~--~~~~------lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
|++. |... ++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 111110111112234789999999976433221 146667766
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-09 Score=117.23 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=43.6
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHH-------HHHhcCeEEEEec
Q 037155 1041 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELLLMKR 1100 (1403)
Q Consensus 1041 ~~P~illLDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------~~~~~d~i~ll~~ 1100 (1403)
.+|+++++|+|++.+ |+.....++..+.++ .+.|+|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 554444555555555 45699999999986521 3567899999974
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.8e-09 Score=118.92 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=43.6
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCc-cce-EEE
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVP-QRT-CAY 267 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~y 267 (1403)
.+.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..+.... .+. .+|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---------------------~~G~I~~~~~~G~~tt~~~~~~~~~~g~ 227 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGL---------------------RTNEISEHLGRGKHTTRHVELIHTSGGL 227 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------------------------CCCCCEEEETTEE
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccc---------------------cccceeeecCCCcccccHHHHhhcCCEE
Confidence 3568999999999999999999999998754 4799988 7765543221 122 799
Q ss_pred eccCCCCCC----CCCHHHHHH
Q 037155 268 ISQHDLHHG----EMTVRETLD 285 (1403)
Q Consensus 268 v~Q~d~~~~----~lTVrE~l~ 285 (1403)
+.|++.+.. .+|+ |+|.
T Consensus 228 v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 228 VADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp EESSCSCSSCCCTTCCH-HHHG
T ss_pred EecCCCccccccccCCH-HHHH
Confidence 999986655 6899 9984
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3e-10 Score=133.35 Aligned_cols=152 Identities=15% Similarity=0.083 Sum_probs=92.6
Q ss_pred ccceEeeeeEEEEeCC-------eEEEEEccCCCchHHHHHhhcCCCCC--ceeEEEEEEcCccCCh--hh-hcceeeEe
Q 037155 896 DRLQLLHSVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKKQ--ET-FARVSGYC 963 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~-~~~~~gyv 963 (1403)
+...+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... .. .++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3445788888888876 88999999999999999999985421 1234544444433211 01 13468999
Q ss_pred ecCCCCCCCCCHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 037155 964 EQTDIHSPHVTLYESLLYSAWLRLSSDV--DTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA 1041 (1403)
Q Consensus 964 ~Q~~~~~~~lTv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~ 1041 (1403)
.|.+.+.+ ++.|++........ .+. ......+.+++.++.+++.. +.+. +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877655 78888754322111 010 01111122344444455543 3333 236999999998655
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
.+||+.+...+.+.|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 78888888999999998764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-10 Score=128.91 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=66.4
Q ss_pred eEeeeeEEEE-------------------eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChhhh
Q 037155 899 QLLHSVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQETF 956 (1403)
Q Consensus 899 ~iL~~vs~~i-------------------~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~ 956 (1403)
.++++|++.+ ++|+++||+||||||||||+++|+|.....+..|+|.+ +|...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 4677888777 89999999999999999999999995330012588888 88775432 3
Q ss_pred cceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 957 ~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
++.+|++ |...+.+.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 4557888 8777778899999998776554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-08 Score=121.80 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=106.5
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-EEEEcCccCChhhhc-ceeeEeecCCCCCCCCCHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKKQETFA-RVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~Q~~~~~~~lTv~ 976 (1403)
..|+++++-+++|+++.|.|++|+|||||+..|++..... .| .+.+.+...+..... |..+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 3577777779999999999999999999999998743210 12 233333222221111 11000000 000
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1054 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~--~~P~illLDEPTsg 1054 (1403)
+. ++.. .....+ ...+.+.++.++..++.-. . ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~------l~~g-~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QN------LRTG-KLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HH------HHTS-CCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HH------HhcC-CCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 01 1111 122222 2334555555544332211 1 1268999987 5667776 68999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCeEEEEecC
Q 037155 1055 LDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1055 LD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~i~ll~~g 1101 (1403)
.+. .....+.+.|+.++++ |++||+++| + |.. .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 742 3446778888888754 999999999 2 431 356679999999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.5e-08 Score=111.55 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred CChhHhhHH---HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 361 ISGGQKKRV---TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 361 LSGGqkqRv---sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
.|||+.+++ ++++++..+|+++++|+|.. ......+++.|+.+.+
T Consensus 166 ~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 166 SEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp STTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 689999999 89999999999999999963 4555667776766544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-08 Score=118.24 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=63.7
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChhh--h-cceeeEeecCCC-------------
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQET--F-ARVSGYCEQTDI------------- 968 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~Q~~~------------- 968 (1403)
+.+|++++|+||||||||||+++|+|...+ ..|+|.+ +|.+..... . .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 346899999999999999999999997653 4799998 887653211 1 135899999874
Q ss_pred ---CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-Cccccc
Q 037155 969 ---HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDAL 1016 (1403)
Q Consensus 969 ---~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 1016 (1403)
++|++|+ ||+.|... .. . .+....+.++++.++|. +..+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~-~----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NH-V----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CS-S----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cC-C----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788999 98887531 11 1 11223478999999995 555554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-07 Score=112.09 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCChhHhhHHHHHHHHh--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEec---------
Q 037155 360 GISGGQKKRVTTGEMLV--GAAKVLLMDEISTGLDS--------STTFQICKFLKQMVHIMDVTMIVALLQ--------- 420 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~--~~p~illLDEptsgLDs--------~t~~~i~~~L~~l~~~~~~tvii~~~q--------- 420 (1403)
++|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..+.++|++.|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 48999886 5667666 68999999999998743 233667888999998888888876551
Q ss_pred --Cc-------hhHHhhcCEEEEEcCCeE
Q 037155 421 --PA-------PETYDLFDDIILISEGQI 440 (1403)
Q Consensus 421 --~~-------~~~~~~fD~IilL~~G~i 440 (1403)
|. ..+...+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22 146678999999987653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.6e-07 Score=100.06 Aligned_cols=61 Identities=21% Similarity=0.123 Sum_probs=45.6
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh-------HHhhcCEEEEEcC
Q 037155 377 GAAKVLLMDEISTGL--DSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE-------TYDLFDDIILISE 437 (1403)
Q Consensus 377 ~~p~illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~-------~~~~fD~IilL~~ 437 (1403)
.+|+++++|++++.+ |.....+++..|.++++..+.|++++.|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665566777777777777788888876654421 4577899999864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-07 Score=107.10 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 037155 1031 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1086 (1403)
Q Consensus 1031 qRl~IA~aL~~~--P~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1086 (1403)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223444555554 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecCcEEEEecC
Q 037155 1087 ----------DIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1087 ----------~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
.+...+|.++.+.+ +++...|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467888888875 44443443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-08 Score=126.72 Aligned_cols=159 Identities=22% Similarity=0.247 Sum_probs=98.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... .
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--------------------~~~~~~~~~~~~~~~~--p 104 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--------------------TLEDILVFPNPEDENM--P 104 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--------------------SCEEEEEECCTTCTTS--C
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--------------------cCCeEEEeCCcccccC--C
Confidence 45789999999999999999999999999999999988643 2488888887765543 4
Q ss_pred eEEEeccCC----------------------CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHH
Q 037155 264 TCAYISQHD----------------------LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321 (1403)
Q Consensus 264 ~~~yv~Q~d----------------------~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~ 321 (1403)
.++|+++.. +.+..+++.+|+.... +... +.+.+..
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~--------------------~~~~v~~- 162 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRT--------------------KAPFIDA- 162 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECC-TTCS--------------------SCCEEEC-
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeecc-ccCC--------------------CCCEEEc-
Confidence 588887642 1222222222221110 0000 0000000
Q ss_pred HHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH
Q 037155 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICK 401 (1403)
Q Consensus 322 ~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~ 401 (1403)
.. ....+.+|.-..... ...++|+|++|++..+.....++.+||+||+.. |++.....+.+
T Consensus 163 ----------~~---~~~~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~ 223 (604)
T 3k1j_A 163 ----------TG---AHAGALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLT 223 (604)
T ss_dssp ----------TT---CCHHHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHH
T ss_pred ----------CC---CCHHhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHH
Confidence 00 001122332111111 124599999999999999999999999999988 88888777777
Q ss_pred HHHH
Q 037155 402 FLKQ 405 (1403)
Q Consensus 402 ~L~~ 405 (1403)
.|.+
T Consensus 224 ~Le~ 227 (604)
T 3k1j_A 224 AMQE 227 (604)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.5e-08 Score=112.13 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=72.8
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHh
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAW 984 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 984 (1403)
++..++|++++|+|+|||||||++..|++.... ..|++.+.+.+.... + ..|.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~------~-------------a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA------A-------------AIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH------H-------------HHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH------H-------------HHHH------
Confidence 444678999999999999999999999985431 124566554432100 0 0011
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 037155 985 LRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAAA 1061 (1403)
Q Consensus 985 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl---~IA~aL~~~P~illLDEPTsgLD~~~~~ 1061 (1403)
...+.+.+++... ...|+|+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 2233444555321 14688999999 89999999999999999974 33444
Q ss_pred HHHHHHHHH
Q 037155 1062 IVMRTVRNT 1070 (1403)
Q Consensus 1062 ~i~~~l~~~ 1070 (1403)
.+++.++++
T Consensus 203 ~l~~eL~~l 211 (306)
T 1vma_A 203 NLMEELRKV 211 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-07 Score=105.55 Aligned_cols=118 Identities=20% Similarity=0.115 Sum_probs=79.4
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
+++++. +|++++++|+||+||||++..|++.... ..|++.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------------------H-HHH--
Confidence 567777 8999999999999999999999995431 13567776654321100 0 000
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1060 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP-TsgLD~~~~ 1060 (1403)
..+.+..++..... + .+-...+.+|.+|+.+...+++++|+||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01123344432211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 037155 1061 AIVMRTVRNT 1070 (1403)
Q Consensus 1061 ~~i~~~l~~~ 1070 (1403)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887776665
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.6e-08 Score=117.42 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=47.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~ 258 (1403)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++| .+|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP---------------------DLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC---------------------CTTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC---------------------CCCEEEECCEEccc
Confidence 3579999999999 99999999999999999999999865 58999999987654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=100.32 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=36.0
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 037155 363 GGQKKRVTTGEMLVGAAKVLLMDEI-STGLDSSTTFQICKFLKQM 406 (1403)
Q Consensus 363 GGqkqRvsia~aL~~~p~illLDEp-tsgLDs~t~~~i~~~L~~l 406 (1403)
-.+-+|.+++++...+++++++||| ++|+|.....++.+..+..
T Consensus 165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 3455788999988899999999999 9999988877777766543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.2e-07 Score=103.07 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=81.0
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS 988 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~ 988 (1403)
++|++++++|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999985421 012 12455555442 234445443321
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 037155 989 SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068 (1403)
Q Consensus 989 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~ 1068 (1403)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112221100 1222 23344555 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1069 NTV---DTGRTVVC-TIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1069 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
-+. ..+.++++ ++|..+ ++.+.++++..+..+| ++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEE
Confidence 332 12334444 478754 5666677665555444 443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-08 Score=107.84 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=49.9
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC---CccceEEE
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---VPQRTCAY 267 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~y 267 (1403)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++...... ..++.++|
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------------------------EIKISISHTTRPKRPGDQEGVDY 55 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------------------------SEEECCCEECSCCCTTCCBTTTB
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------------------------CeEEeceeccCCCchhHhcCceE
Confidence 46678999999999999999999999999852 233344332221 12356889
Q ss_pred eccCCCCCCCCCHHHHHHhhc
Q 037155 268 ISQHDLHHGEMTVRETLDFSG 288 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~ 288 (1403)
++|++..++.+++.+++.+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 56 FFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp EECCHHHHHHHHHHTCEEEEE
T ss_pred EeccHHHHHHHHhcCcEEeee
Confidence 999887777777777765543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-08 Score=124.35 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=91.9
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcC----CCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCC-----
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV----- 973 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l----- 973 (1403)
.+++.+.++..+.|.|++||||||+++.|.. ..++ |++.+.+.+.+...+.. ...+|++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~--------~~~lPhl~~~Vv 226 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV--------YEGIPHLLTEVV 226 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG--------GTTCTTBSSSCB
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh--------hccCCcccceee
Confidence 4677888899999999999999999999865 2222 33333333322111111 0011221
Q ss_pred -CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccc--cccCCCCCCCCHHHHHHH----------HHHHHHh
Q 037155 974 -TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA--LVGLPGVNGLSTEQRKRL----------TIAVELV 1040 (1403)
Q Consensus 974 -Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~vg~~~~~~LSgGqrqRl----------~IA~aL~ 1040 (1403)
.+.+....-.++ ..+.+++ .+.++..|+.+..+. .+. ..+|+||+|+. .+++++.
T Consensus 227 td~~~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~ 294 (512)
T 2ius_A 227 TDMKDAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLK 294 (512)
T ss_dssp CSHHHHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCC
T ss_pred cCHHHHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccc
Confidence 122222111111 1223333 367888888765432 111 13677776642 3556667
Q ss_pred hCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 037155 1041 ANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1085 (1403)
Q Consensus 1041 ~~P~-illLDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1085 (1403)
..|. ++++||++.-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 7898 78999999988843 3455566665543 3779999999997
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=8e-08 Score=103.04 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~ 1070 (1403)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=100.73 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|++++++|||||||||++..|++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999875
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-08 Score=129.75 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=99.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCC-------
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI------- 968 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~------- 968 (1403)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 3456889999999999999999999999999999999965432 23788888876542 3445788876431
Q ss_pred ---------------CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH
Q 037155 969 ---------------HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL 1033 (1403)
Q Consensus 969 ---------------~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1033 (1403)
.+..+++.+|+.....-..+...-.. . ....-+.+|..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 11111221211110000000000000 0 00011122221111111 136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 1034 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069 (1403)
Q Consensus 1034 ~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~ 1069 (1403)
..++...+++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899988888888875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-10 Score=128.80 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=81.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 972 (1403)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..|.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345789999999999 99999999999999999998653 4677888754311 112234566777643 4567
Q ss_pred CCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+++.|++......+.. ......+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777777432221111 00011222222333322 3788999999999999999986 4543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-09 Score=124.63 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=81.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 972 (1403)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..|.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 345789999999999 89999999999999999998654 4678888754321 112234667777643 4567
Q ss_pred CCHHHHHHHHHhhhCCC-CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 973 VTLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 78878774332211100 0011122222222221 4789999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.7e-08 Score=105.79 Aligned_cols=64 Identities=25% Similarity=0.204 Sum_probs=41.0
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHH
Confidence 56678999999999999999999999999642 23444432211 122445789998754443333
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-06 Score=100.73 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=49.1
Q ss_pred HHHHHHHHhcC--CcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEEEecCch------
Q 037155 368 RVTTGEMLVGA--AKVLLMDEISTGL----------DS---STTFQICKFLKQM---VHIMDVTMIVALLQPAP------ 423 (1403)
Q Consensus 368 Rvsia~aL~~~--p~illLDEptsgL----------Ds---~t~~~i~~~L~~l---~~~~~~tvii~~~q~~~------ 423 (1403)
-+.++++++.. |+++++||+++.+ |+ ..+..+.+.++++ ++..+.|+|++.|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45677877754 9999999999998 33 2222344444444 46668888776553321
Q ss_pred ---------hHHhhcCEEEEEcCCeEEEecC
Q 037155 424 ---------ETYDLFDDIILISEGQIVYHGP 445 (1403)
Q Consensus 424 ---------~~~~~fD~IilL~~G~iv~~G~ 445 (1403)
.+...+|.++.+..++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1446789888888777665553
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-07 Score=114.29 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=45.0
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
.+|+|||++|++ +++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 479999999999 99999999999999999999996543 3689999998754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-09 Score=121.60 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=53.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++.....
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----------------------~~~i~~~~~~~~~~~~~~~ 117 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----------------------VPFITASGSDFVEMFVGVG 117 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----------------------CCEEEEEHHHHHHSTTTHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----------------------CCEEEecHHHHHHHHhhHH
Confidence 5788999999999 89999999999999999999762 5788888765422111
Q ss_pred cceEEEeccCC-CCCCCCCHHHHHH
Q 037155 262 QRTCAYISQHD-LHHGEMTVRETLD 285 (1403)
Q Consensus 262 ~~~~~yv~Q~d-~~~~~lTVrE~l~ 285 (1403)
.+.+++++|+. ...+.+++.|++.
T Consensus 118 ~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 118 AARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCcEEehhhhH
Confidence 12345555543 2344555555553
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-09 Score=118.40 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=51.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.....
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----------------------~~~i~~~~~~~~~~~~~~~ 93 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----------------------VPFITASGSDFVEMFVGVG 93 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----------------------CCEEEEEHHHHHHSCTTHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEeeHHHHHHHHhhHH
Confidence 5789999999999 99999999999999999999762 5788888765422111
Q ss_pred cceEEEeccCC-CCCCCCCHHHHH
Q 037155 262 QRTCAYISQHD-LHHGEMTVRETL 284 (1403)
Q Consensus 262 ~~~~~yv~Q~d-~~~~~lTVrE~l 284 (1403)
.+.++++.|+. ...+.+++.|++
T Consensus 94 ~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 94 AARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHHHHHHhcCCeEEEehhh
Confidence 12344455542 233444555555
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-07 Score=98.13 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=36.0
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
|..-.++++.+|++++.+|+++++| ||++|.....++.+.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3333345678999999999999999 999999999999988865
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=100.64 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=28.3
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|-+++|+++.|.||||||||||+..+++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999998763
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-07 Score=111.86 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHcCCccccc--ccccCccCCCCChhHhhHH----------HHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHH
Q 037155 338 YVLKLLGLDICAD--TMVGDEMRRGISGGQKKRV----------TTGEMLVGAAK-VLLMDEISTGLDSSTTFQICKFLK 404 (1403)
Q Consensus 338 ~il~~lgL~~~~d--t~vg~~~~rgLSGGqkqRv----------sia~aL~~~p~-illLDEptsgLDs~t~~~i~~~L~ 404 (1403)
..++..|+.+..+ ..+. ..+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~ 322 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIA 322 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHH
Confidence 3456666655322 2222 23799998863 24556677887 88999999988843 344555555
Q ss_pred HH---HHhCCcEEEEEEecCchh
Q 037155 405 QM---VHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 405 ~l---~~~~~~tvii~~~q~~~~ 424 (1403)
++ .+..|.++|++.+.|+.+
T Consensus 323 ~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 323 RLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp HHHHHCGGGTEEEEEEESCCCTT
T ss_pred HHHHHhhhCCcEEEEEecCCccc
Confidence 44 444577888888887733
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-06 Score=90.75 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 1033 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071 (1403)
Q Consensus 1033 l~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~ 1071 (1403)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35589999999999999 99999999999988887654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=95.96 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=22.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHh-cccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLH 222 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~La-G~~~ 222 (1403)
.+..+++|+.+++|++++|+||||||||||+++|+ |.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35778999999999999999999999999999999 9864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.3e-06 Score=101.92 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1085 (1403)
+++++|-.++.+....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777776663 34778999999975
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.5e-05 Score=97.16 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=38.1
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEecC
Q 037155 363 GGQKKRVTTGEMLVGAAKVLLMDEI----------STGLDSSTTFQICKFLKQMV---HIMDVTMIVALLQP 421 (1403)
Q Consensus 363 GGqkqRvsia~aL~~~p~illLDEp----------tsgLDs~t~~~i~~~L~~l~---~~~~~tvii~~~q~ 421 (1403)
|++++|..+++|....|.|+|+||+ +.|.|......+.++|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 34667666555556665543 22344555565554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.3e-08 Score=118.47 Aligned_cols=144 Identities=11% Similarity=0.029 Sum_probs=81.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCC-CCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIH-SPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~-~~~lTv~ 976 (1403)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+. ..+...+|+++|...+ +.+++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 35899999999999999999999999999999999853 34544412221 1122236777776542 2333321
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHH---cCCCC-cc---ccccc----CCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMEL---VELKP-LR---DALVG----LPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~---l~L~~-~~---~~~vg----~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
..+ .+.............+...++- +.+.. .. +.+.. ......+++|+++|+..+.+++.+|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 111 1100000000001112233320 00110 00 11000 012335899999999998888899998
Q ss_pred EE-EeCCCC
Q 037155 1046 IF-MDEPTS 1053 (1403)
Q Consensus 1046 ll-LDEPTs 1053 (1403)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999987
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=92.90 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=46.2
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCchhHHhhcCEEEEEcC
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIM-DVTMIVALLQPAPETYDLFDDIILISE 437 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~~~~~~fD~IilL~~ 437 (1403)
||++|.+|++.|...+.++++++.|+|... ..+|...++++.+.. +..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI------------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI------------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE------------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE------------echHHhcC
Confidence 999999999999999999999999998643 346777777776665 5555554 77777754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=95.70 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=86.4
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCC---------ceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH---HHH
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTG---------GYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE---SLL 980 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e---~l~ 980 (1403)
.++|+|++|||||||++.|+|.... +...|.+.++|.+. .+....|++.+.+ ...+.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCC----HHHHHHHHHHHH
Confidence 3999999999999999999995421 13468899988543 1223456655422 111211 111
Q ss_pred HHH--h--h--hCCCCCc--HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 037155 981 YSA--W--L--RLSSDVD--TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA----VEL-VANPSIIF 1047 (1403)
Q Consensus 981 ~~~--~--l--r~~~~~~--~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA----~aL-~~~P~ill 1047 (1403)
... . + ....+.. ..+..+.+.++++.+++.+..--.+++. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 000 0 0 0011111 1223344567788887655431122221 224787888888877 555 334454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988653
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.4e-07 Score=100.83 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=38.9
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----------
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---------- 260 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---------- 260 (1403)
++.+.+ ++++|+|||||||||||++|+|.+.+ .+|+|.++|.++....
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~---------------------~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP---------------------DLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC---------------------CTTTC------------------CGG
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc---------------------CCCeEEECCEEcccCCccccccchhh
Confidence 456666 89999999999999999999999865 4788988887663211
Q ss_pred -ccceEEEeccC
Q 037155 261 -PQRTCAYISQH 271 (1403)
Q Consensus 261 -~~~~~~yv~Q~ 271 (1403)
.++.++|++|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 13467888874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-06 Score=94.92 Aligned_cols=39 Identities=33% Similarity=0.274 Sum_probs=22.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc-CCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 936 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 936 (1403)
.+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999 8753
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-07 Score=96.91 Aligned_cols=56 Identities=23% Similarity=0.143 Sum_probs=38.0
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh--hhcceeeEeecC
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE--TFARVSGYCEQT 966 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~ 966 (1403)
.+..++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3556789999999999999999999999753 6678887654321 112235777765
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-07 Score=96.93 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--ccceEEEec
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--PQRTCAYIS 269 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~ 269 (1403)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------------------------g~~~i~~d~~~~~~~~~~~~~g~~~ 78 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------------------------GLEFAEADAFHSPENIATMQRGIPL 78 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------------------------CCEEEEGGGGSCHHHHHHHHTTCCC
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------------------------CCeEEcccccccHHHHHHHhcCCCC
Confidence 456789999999999999999999999864 77888876653211 112356666
Q ss_pred cCCCCCCCCCHHHHH
Q 037155 270 QHDLHHGEMTVRETL 284 (1403)
Q Consensus 270 Q~d~~~~~lTVrE~l 284 (1403)
|++...+.+++.|++
T Consensus 79 ~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 79 TDEDRWPWLRSLAEW 93 (200)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHH
Confidence 654444334444444
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.4e-06 Score=100.13 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=37.1
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEE-EEEcCccCChhhhcceeeEeecC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IKISGYPKKQETFARVSGYCEQT 966 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~ 966 (1403)
-+++|+++.|.||+|+|||||+..+++.... ..|. +++++.........+.+|+.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhh
Confidence 4899999999999999999999999874211 0122 45665443222233344544443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=94.96 Aligned_cols=166 Identities=13% Similarity=0.005 Sum_probs=85.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCC
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 278 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 278 (1403)
.++|+|+||||||||++.|+|...... ..-+.+..+.+|.|.++|.++. .-.+.|++.+.+...-+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~----------~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve- 246 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVD----------TKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD- 246 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc----------CCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-
Confidence 489999999999999999999753110 0011122346799999885431 12345555543211100
Q ss_pred CHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCch--HHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCc
Q 037155 279 TVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356 (1403)
Q Consensus 279 TVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 356 (1403)
..+.++.........-.-+ +. .+++ .+.. ...+..+++.+++.+..--.|++.
T Consensus 247 ~f~~tl~~~~~aD~il~Vv-------------D~-s~~~~~~~~~-----------~~~~~~~L~~l~~~~~p~ilV~NK 301 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVI-------------DS-TFSENLLIET-----------LQSSFEILREIGVSGKPILVTLNK 301 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEE-------------ET-TSCHHHHHHH-----------HHHHHHHHHHHTCCSCCEEEEEEC
T ss_pred HHHHHHHHHHhCCEEEEEE-------------EC-CCCcchHHHH-----------HHHHHHHHHHhCcCCCCEEEEEEC
Confidence 0111221110000000000 00 0011 1110 112345677777665442333431
Q ss_pred cCCCCChhHhhHHHHH----HHH-hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 357 MRRGISGGQKKRVTTG----EML-VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 357 ~~rgLSGGqkqRvsia----~aL-~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
..-+|+|+++|+.++ +++ ..+|++ +|+|++|......+.+.|.+...
T Consensus 302 -~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 302 -IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp -GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred -CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 122788889988887 554 333444 89999999999999998887654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=6.7e-06 Score=106.61 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCeEEE
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~i~l 1097 (1403)
-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||+++ ++.+.+++.-+
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~v 264 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPL 264 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCc
Confidence 479999999999999999999999999996 999887777766666654445677775 89765 56677764333
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.77 E-value=6.3e-07 Score=98.72 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=38.5
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----------hhhcceeeEeecC
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----------ETFARVSGYCEQT 966 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 966 (1403)
++.+.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566677 89999999999999999999996543 25788888765411 1124568888884
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.6e-05 Score=90.94 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQP 1084 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~ 1084 (1403)
.+|++|+|++. +.+...++-++++| +|++|+|......+.+.+.+... +..+|++. ||.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 58999998876 55556777789999 99999999988888887777654 77888888 764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.6e-05 Score=83.76 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 368 RVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407 (1403)
Q Consensus 368 Rvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~ 407 (1403)
....|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999 99999999999988887643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-05 Score=86.40 Aligned_cols=40 Identities=33% Similarity=0.147 Sum_probs=25.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+...+++|||+.+++|+.++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4557899999999999999999999999999999999875
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.3e-05 Score=93.25 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
-|+.+.+-++||+++.|.|++|+|||||+.-++..... .|. .+.|+. ..++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~---------~Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDR---------GVAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTC---------EEEEEE------SSSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCC---------eEEEEe------CCCCHHHHH
Confidence 45555566899999999999999999999888753210 111 122322 123333222
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
. ++......+.+..+.+ | .||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ~------------------Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 L------------------RALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp H------------------HHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred H------------------HHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 1 1111111122222221 1 599999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHhC--CCEEEEEe
Q 037155 1060 AAIVMRTVRNTVDT--GRTVVCTI 1081 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~--g~tvi~~~ 1081 (1403)
.|...++++.++ |..+|++-
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEe
Confidence 566666666543 56777763
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.1e-05 Score=83.20 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=32.2
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999 9999999999999999999998754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.61 E-value=1.3e-05 Score=93.06 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=58.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-----
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV----- 260 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~----- 260 (1403)
+++++++.+++|++++|+||||+||||++..|++.+.+ ..|+|.+.+.+.....
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~---------------------~g~kVllid~D~~r~~a~~ql 152 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE---------------------LGYKVLIAAADTFRAGATQQL 152 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH---------------------TTCCEEEEECCCSCHHHHHHH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH---------------------CCCeEEEEeCCCcchhHHHHH
Confidence 45789999999999999999999999999999998753 3578888776542210
Q ss_pred --c-----cceEEEe-ccCCCCCCCCCHHHHHHh
Q 037155 261 --P-----QRTCAYI-SQHDLHHGEMTVRETLDF 286 (1403)
Q Consensus 261 --~-----~~~~~yv-~Q~d~~~~~lTVrE~l~f 286 (1403)
. +..+.++ +|.....|..++++++..
T Consensus 153 ~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 153 EEWIKTRLNNKVDLVKANKLNADPASVVFDAIKK 186 (320)
T ss_dssp HHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHH
T ss_pred HHHHhccccCCceEEeCCCCCCCHHHHHHHHHHH
Confidence 1 3457888 776555555566666654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.2e-06 Score=107.36 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=51.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----------------------~~~i~i~g~~~~~~~~g~~ 108 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----------------------VPFITASGSDFVEMFVGVG 108 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----------------------CCEEEEEGGGGTSSCTTHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEEehhHHHHhhhhhH
Confidence 4678899999999 89999999999999999999762 4778888876543211
Q ss_pred cceEEEeccCCC-CCCCCCHHHHH
Q 037155 262 QRTCAYISQHDL-HHGEMTVRETL 284 (1403)
Q Consensus 262 ~~~~~yv~Q~d~-~~~~lTVrE~l 284 (1403)
.+.+.+++|+.. ..|.+.+.|++
T Consensus 109 ~~~v~~lfq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 109 AARVRDLFETAKRHAPCIVFIDEI 132 (499)
T ss_dssp HHHHHHHTTTSSSSSSCEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCEEEEehH
Confidence 123444555432 33444444444
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.9e-05 Score=99.06 Aligned_cols=132 Identities=16% Similarity=0.096 Sum_probs=73.9
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYS 982 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~ 982 (1403)
+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ...++.+++..|...+... ++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~------ 75 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR------ 75 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE------
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE------
Confidence 457889999999999999999999999632211123555 45543221 1223344555443222110 000
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 983 AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 983 ~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
..+.|+ +|...++ .......-..+..++++| |+.|+|+.+...
T Consensus 76 ---------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 76 ---------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp ---------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred ---------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 011222 2221222 112223335678889999 999999887743
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcH
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQPSI 1086 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~~~~ 1086 (1403)
+ +.+.+.+.++|+++|..+.
T Consensus 119 ~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 W----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHccCCEEEEecCCch
Confidence 2 3333457889999998763
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.51 E-value=2.9e-05 Score=83.73 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++++|++++|+||||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999975
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.49 E-value=1.2e-05 Score=90.16 Aligned_cols=64 Identities=22% Similarity=0.094 Sum_probs=43.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHh---ccccccchhhcccchhhhhhhccCCCcceEEE--------ECC
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLHENLRVRFQSNKFLIIRIWKTEQASGKIT--------YCG 253 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~La---G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~--------~~G 253 (1403)
.++++++ ++|++++|+|||||||||++++|+ |...+ .+|.+. .+|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---------------------d~g~i~r~~~~~~~~~g 73 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---------------------DSGAIYRVLALAALHHQ 73 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---------------------EHHHHHHHHHHHHHHTT
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---------------------CCCceehHhHHHHHHcC
Confidence 3455543 789999999999999999999999 76543 467776 777
Q ss_pred ccCCCCC----ccceEEEeccCC
Q 037155 254 HELNEFV----PQRTCAYISQHD 272 (1403)
Q Consensus 254 ~~~~~~~----~~~~~~yv~Q~d 272 (1403)
.++.+.. ..+.+++++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 74 VDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp CCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCcccHHHHHHHHHcCCEEEecC
Confidence 7663321 135577777643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=1.4e-05 Score=86.23 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=33.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
....++++...++|++++|+||||||||||+++|++.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566777778999999999999999999999999874
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.42 E-value=5.6e-05 Score=81.42 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.0
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.+++|++++|+||||||||||++.|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998743
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.39 E-value=5.9e-05 Score=81.20 Aligned_cols=38 Identities=29% Similarity=0.120 Sum_probs=24.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999643
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00048 Score=81.64 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1085 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1085 (1403)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776654 5789999999874
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00042 Score=80.25 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=34.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.+.+-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 355678888888999999999999999999999988854
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=8.4e-07 Score=108.73 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=80.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---hhcceeeEeecCCC-CCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---TFARVSGYCEQTDI-HSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~l 973 (1403)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+.+++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 34678888889989 89999999999999999998653 35678887653211 11223455666543 34555
Q ss_pred CHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 974 TLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555322111110 00112233333444433 2677788888888888899987 88887
Q ss_pred C
Q 037155 1053 S 1053 (1403)
Q Consensus 1053 s 1053 (1403)
.
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.2e-06 Score=90.88 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=35.5
Q ss_pred cceEeeeeEEEEeC---CeEEEEEccCCCchHHHHHhhcCCC
Q 037155 897 RLQLLHSVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
...+|+|+|+.|++ |+.++|+|++||||||+.++|++..
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35699999999999 9999999999999999999999743
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.37 E-value=1.6e-05 Score=89.00 Aligned_cols=39 Identities=44% Similarity=0.536 Sum_probs=36.0
Q ss_pred cceeeeceEEEEeC---CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 183 DVQILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~---Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..++|+|+|+.+++ |+.++|+|++||||||+.++|++.+
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999 9999999999999999999999865
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=7.2e-05 Score=79.24 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.36 E-value=4.6e-05 Score=80.56 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.7
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999 9999999999999999999874
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=3.5e-05 Score=83.34 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCeEEEEe
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELLLMK 1099 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~i~ll~ 1099 (1403)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 568888999998888888654332 3345666555555554432 356888888875321 245688888885
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=94.34 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=53.7
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEIST-GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++-.++..++.+++++
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 79999999999999999999999999996 9998877666666654432 2456666655566666667764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00031 Score=82.84 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 360 GISGGQKKRVTTGEMLVGAAKVLLMD-EISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~~~p~illLD-EptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
.+|+||+|++. +.+...++-++++| ++.+|+|......+++.+..... +..+++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 37999998876 55555777888999 99999999888888777766432 45555544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=1.5e-05 Score=94.24 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1082 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1082 (1403)
.+..++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999877764334445443 34566677765555 56766665
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.30 E-value=3.9e-05 Score=90.78 Aligned_cols=38 Identities=34% Similarity=0.317 Sum_probs=35.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999864
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.30 E-value=2.9e-05 Score=87.02 Aligned_cols=57 Identities=23% Similarity=0.135 Sum_probs=43.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhc---CCCCCceeEEEEE--------EcCccCCh----hhhcceeeEeecCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIK--------ISGYPKKQ----ETFARVSGYCEQTD 967 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 967 (1403)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8654 2357777 77776521 23556788888754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.001 Score=75.91 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1088 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1088 (1403)
+++++.|..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998766532 22234444444321 2356788898753 334
Q ss_pred HHhcCeEE
Q 037155 1089 FEAFDELL 1096 (1403)
Q Consensus 1089 ~~~~d~i~ 1096 (1403)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44565443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00081 Score=78.80 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999998886
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00027 Score=81.32 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCeE
Q 037155 1025 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~--~~P~illLDEPTsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+|.|++ .++..+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899987 4566666 68999998 7899876 66777888887653 43 5666666643 344555544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.21 E-value=4.2e-05 Score=88.71 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=38.9
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
+++++++.+++|++++|+|+||+||||++..|++.... ..|++.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34688888999999999999999999999999985431 136677766554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=9.4e-05 Score=81.63 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=32.3
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 478999999999999999999999986 25677777653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=77.64 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=28.7
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEc
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS 947 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~ 947 (1403)
.+|++++|+||||||||||++.|++..... ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 368999999999999999999999854321 23554443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00016 Score=78.55 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=26.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00015 Score=76.10 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+|++++|+|||||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999854
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00083 Score=78.10 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 037155 1029 QRKRLTIAVELV---ANPSIIFMDEPTSGLDA--------RA----AAIVMRTVRNTVD-TGRTVVCTIHQ 1083 (1403)
Q Consensus 1029 qrqRl~IA~aL~---~~P~illLDEPTsgLD~--------~~----~~~i~~~l~~~~~-~g~tvi~~~H~ 1083 (1403)
+.+.+..++.++ .+|+++++|+.++-.+. .. ...+++.|+++++ .+++||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 346677788887 57999999999976532 11 2345555666654 48999998875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00015 Score=79.88 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=26.7
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++..++|++++|.||+|||||||+++|+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999999999985
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0022 Score=73.14 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999864
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00022 Score=82.65 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=78.0
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.- +++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 46666667999999999999999999998888742110 01 11233221 23333322
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.- .......+.+.++.+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 113 ~R------------------~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 KR------------------LIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp HH------------------HHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred HH------------------HHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 11 111111111111111 0 012889999999999999999999999998644
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 037155 1060 AAIVMRTVRNTVDT-GRT--VVCTIH 1082 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~-g~t--vi~~~H 1082 (1403)
...+...++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33455666666543 666 777755
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0023 Score=74.86 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 186 iL~~vs-~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 57999999999999999999999999875
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=75.13 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 186 iL~~vs-~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-|+.+- +-+++|+++.|.||||+|||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 579999999999999999999999998753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00022 Score=76.82 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=27.1
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.++|++++|+||||||||||++.|++.+++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999999999998753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=6.1e-05 Score=81.14 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=36.9
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEE--EEcCcc
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI--KISGYP 950 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~ 950 (1403)
..+.+++..++|++++|+||||||||||.++|++.... .|.+ .++|..
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~ 63 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDN 63 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCch
Confidence 44556666789999999999999999999999986431 2444 777654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00013 Score=93.18 Aligned_cols=31 Identities=39% Similarity=0.282 Sum_probs=26.6
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+++|+.++|+|++|+|||||++.|++...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4577899999999999999999999998653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=78.06 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=27.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
..+|+++++.++ .++|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00031 Score=76.12 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKT 936 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 936 (1403)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00036 Score=74.90 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00051 Score=74.18 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999999999864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=82.81 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=47.4
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-EecCcEEEEecCCC
Q 037155 1041 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL-MKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l-l~~gG~~~~~g~~~ 1111 (1403)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.+..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999988888999999999854321111111111 22 35666666664
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00062 Score=69.81 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+.++.+.+| +++|+|||||||||+|.+|.-.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 344555555 9999999999999999999843
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0042 Score=71.24 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=25.4
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++++-++|.||||+|||||+++|++.+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5678889999999999999999999865
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00052 Score=83.27 Aligned_cols=69 Identities=9% Similarity=0.217 Sum_probs=43.4
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEE-EcCCeEEEecCh
Q 037155 377 GAAKVLLMDEISTGLDS-STTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL-ISEGQIVYHGPR 446 (1403)
Q Consensus 377 ~~p~illLDEptsgLDs-~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~Iil-L~~G~iv~~G~~ 446 (1403)
.++++|++||+..-.+. .+...+...+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38999999999887764 667778888877654 4677888777665443222233222 344555544443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0076 Score=71.17 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.++|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 889999999999999999998764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00045 Score=72.06 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999976
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00046 Score=81.43 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00056 Score=70.09 Aligned_cols=29 Identities=28% Similarity=0.680 Sum_probs=24.0
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999986
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00021 Score=82.61 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|+||||||||||+++|++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00044 Score=85.75 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=28.7
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.+++|++++|+|+||||||||+++|+|.+.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999854
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00058 Score=73.23 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.0
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+|++++|+||||||||||++.|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999999753
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00079 Score=72.63 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.034 Score=65.23 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.7
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999888654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00073 Score=70.72 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.2
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
.+|++++|+|+|||||||+.+.|++.. |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 445666543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.003 Score=75.84 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=72.92 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=26.9
Q ss_pred eeceEEEEe---CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 187 LKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 187 L~~vs~~i~---~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|.++|+.+. +|.+++|.||+||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567777776 899999999999999999999998773
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0022 Score=73.61 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=25.2
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++++.-+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5778899999999999999999999754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00046 Score=80.87 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=34.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++++++.+++|..++|+|+||||||||++.|+|.+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46778888889999999999999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00013 Score=84.36 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.3
Q ss_pred ccceEeeeeEEEEeCCe------EEEEEccCCCchHHHHHhhcCCC
Q 037155 896 DRLQLLHSVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+..+.|++++..+..++ ++||+||||||||||+++|.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456777777776665 99999999999999999999854
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00097 Score=69.50 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.015 Score=66.61 Aligned_cols=27 Identities=48% Similarity=0.705 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|...++|.||||+||||+.++|++.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 456789999999999999999999764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0014 Score=77.08 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+++..++|+|+||||||||++.|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999997643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0074 Score=72.41 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
++.+++++||+||||||++..|++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999988753
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=77.27 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--CceeEEEEEEcCccCChhhhc-ceee---EeecCCCCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYIEGDIKISGYPKKQETFA-RVSG---YCEQTDIHSPHV 973 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~-~~~g---yv~Q~~~~~~~l 973 (1403)
-|+.+.+-+++|+++.|.|++|+|||||..-++.... .+ ..-+.++.. .+...+. |..+ -++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~------ 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-MPAAQLTLRMMCSEARIDMNR------ 259 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-SCHHHHHHHHHHHHTTCCTTT------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-CCHHHHHHHHHHHHcCCCHHH------
Confidence 3555556689999999999999999999988876321 11 011222221 1111111 1000 000000
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEP 1051 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~--~~P~illLDEP 1051 (1403)
++. .....++ ...+.+.++.+.-.++ .+-. ..++|..+- .+.++.+. .+|+++++|..
T Consensus 260 -----------l~~-g~l~~~~-~~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l 319 (444)
T 2q6t_A 260 -----------VRL-GQLTDRD-FSRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDYL 319 (444)
T ss_dssp -----------CCG-GGCCHHH-HHHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEECG
T ss_pred -----------HhC-CCCCHHH-HHHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcCh
Confidence 000 0111222 1223333333322221 1111 125777765 34556665 47999999998
Q ss_pred CCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q 037155 1052 TSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIH 1082 (1403)
Q Consensus 1052 TsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H 1082 (1403)
+.=.+. .....+.+.|+.++++ +++||+++|
T Consensus 320 ~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 320 QLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp GGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred hhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 754322 1234677788888754 899999988
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0039 Score=65.02 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0015 Score=70.25 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999854
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.00082 Score=83.35 Aligned_cols=41 Identities=37% Similarity=0.460 Sum_probs=32.3
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-EEE-EcCcc
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIK-ISGYP 950 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 950 (1403)
+++|++++|+|+||||||||+++|+|...+. .| .+. ++|..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 6789999999999999999999999965321 23 564 77743
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.013 Score=71.08 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=33.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345678888889999999999999999999999988654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0024 Score=67.15 Aligned_cols=28 Identities=39% Similarity=0.412 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|++++|.|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0022 Score=69.22 Aligned_cols=29 Identities=28% Similarity=0.680 Sum_probs=23.9
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999985
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=68.30 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.++.+.+| +++|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455554 99999999999999999997443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=66.75 Aligned_cols=27 Identities=48% Similarity=0.770 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++.-++|.||+|+|||||+++++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456678999999999999999999865
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0025 Score=69.47 Aligned_cols=25 Identities=44% Similarity=0.599 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+..++|+|||||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0024 Score=68.79 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999999999765
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0029 Score=74.56 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.021 Score=62.80 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1082 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1082 (1403)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666555555443321 1258888888
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0024 Score=69.11 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=26.7
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|.+++|.|++||||||+.+.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999999999875
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.016 Score=63.66 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1093 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1093 (1403)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-++++++.--+.....+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555543 33578999999999976 6777666444444444332234555554433333344443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=66.88 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999975
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0047 Score=65.45 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999988887 7899999999999999999873
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0078 Score=68.06 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++.-+.|.||+|+|||||.++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 556679999999999999999998753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0052 Score=74.43 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC---CCCccceEEEeccCCCC
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN---EFVPQRTCAYISQHDLH 274 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~d~~ 274 (1403)
-.++|+|+||+|||||++.|+|....... ...+ -...+..|.+.++|+++. ....++..++.+|....
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~g--------tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~ 251 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVS-PIPG--------TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEK 251 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC--------------CCEEEEETTEEEEESSCSCC-----------CC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccC-CCCC--------CcCCceEEEEEECCEEEEEEECCCCccccccchhhHHH
Confidence 47899999999999999999997531000 0000 001235799999997542 11122333444344344
Q ss_pred CCCCCHHHHHHh
Q 037155 275 HGEMTVRETLDF 286 (1403)
Q Consensus 275 ~~~lTVrE~l~f 286 (1403)
+..++..+++..
T Consensus 252 ~~~~~~~~~i~~ 263 (439)
T 1mky_A 252 YSNYRVVDSIEK 263 (439)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 444445555544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.003 Score=69.48 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=25.8
Q ss_pred EeeeeEEEEe---CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 900 LLHSVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 900 iL~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3667777776 89999999999999999999999754
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0017 Score=80.81 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=31.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++++++.+ +|+.++|+||||+|||||+++|++.+.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556666666 899999999999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=64.48 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++|+||+|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.017 Score=67.72 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999988775
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.024 Score=65.56 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999988774
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0092 Score=69.00 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=31.5
Q ss_pred hcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 376 VGAAKVLLMDEISTG-LDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 376 ~~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
+.++++|++||+-.- .|..+...+...+..... .+..+|++...+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 356899999998662 233667778888776654 35566666655543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0048 Score=64.33 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.00061 Score=79.82 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
...+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578888888999999999999999999999999974
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0061 Score=73.87 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=29.5
Q ss_pred EEEEEccCCCchHHHHHhhcCCCC------Cc----eeEEEEEEcCcc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKT------GG----YIEGDIKISGYP 950 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~------~~----~~~G~i~i~g~~ 950 (1403)
.++|+|+||+|||||++.|+|... ++ ...|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999532 11 235788888864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0049 Score=67.91 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=37.3
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 037155 362 SGGQKKRVTTGEMLVGAAKVLLMDEIST-GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430 (1403)
Q Consensus 362 SGGqkqRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 430 (1403)
+.|.-.+. ....+.+-+++++||+-. ++|.......++.+..... .-.+++++-+-+.....++|+
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcC
Confidence 34544444 233578899999999976 6777666445444443322 124555555555444444443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0014 Score=76.18 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=32.1
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCChHHHHHHHhcccc
Q 037155 186 ILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~--~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++++++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56677777788887 99999999999999999999874
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0078 Score=72.90 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=27.7
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 444545589999999999999999999887775
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0039 Score=72.83 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=32.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|+++.+.+|+.++|+||+|+|||||++.|++...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 8999999999999999999999999999998753
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0047 Score=64.81 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.1
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0044 Score=66.69 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998644
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0017 Score=75.87 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=30.4
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0061 Score=64.37 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|.+++|.|++||||||+.+.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=62.90 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCeEEEEe
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~i~ll~ 1099 (1403)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|.+.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45566777777999999999 55667888999998874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.018 Score=66.52 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.5
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 037155 1040 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084 (1403)
Q Consensus 1040 ~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1084 (1403)
..+|.+||+||+-. .-|..+...+...+..+.+.|+.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344777888888888877787788877754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0063 Score=65.38 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh--HHhhcCEEEEEc
Q 037155 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE--TYDLFDDIILIS 436 (1403)
Q Consensus 362 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~--~~~~fD~IilL~ 436 (1403)
+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .+.++|+..+ ...+ ....+|.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~-~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVP-LLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECT-TTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEec-hhhhcCcHhhCCEEEEEE
Confidence 678899999999888888654433 2345555555555444321 2445555432 2222 256788887774
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.006 Score=64.61 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=20.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999998887 5689999999999999999974
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.039 Score=64.80 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998643
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0049 Score=67.15 Aligned_cols=57 Identities=21% Similarity=0.093 Sum_probs=37.2
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEE--------cCccCCh----hhhcceeeEeecCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKI--------SGYPKKQ----ETFARVSGYCEQTD 967 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~~ 967 (1403)
+.+++|+|||||||||+.+.|++..... ...|++.. +|.+... ..+.+.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999743111 22366554 4554331 12345577777753
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0073 Score=64.57 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~ 989 (1403)
+..-+.|.||+|+|||||+++|+...... ...+.+
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~------------------------------------------- 87 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLI------------------------------------------- 87 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEE-------------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEE-------------------------------------------
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHH
Q 037155 990 DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1067 (1403)
Q Consensus 990 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP--TsgLD~~~~~~i~~~l 1067 (1403)
.....-...+......-.+....+. +.++++|++||+ ...-|......+..++
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 88 -VYVPELFRELKHSLQDQTMNEKLDY------------------------IKKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp -EEHHHHHHHHHHC---CCCHHHHHH------------------------HHHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred -EEhHHHHHHHHHHhccchHHHHHHH------------------------hcCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhc
Q 037155 1068 RNTVDTGRTVVCTIHQPSIDIFEAF 1092 (1403)
Q Consensus 1068 ~~~~~~g~tvi~~~H~~~~~~~~~~ 1092 (1403)
......+..+|++++.+..++.+.+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.048 Score=59.55 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=40.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCEEEEEc
Q 037155 378 AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL---------QPAPETYDLFDDIILIS 436 (1403)
Q Consensus 378 ~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~---------q~~~~~~~~fD~IilL~ 436 (1403)
+++++++||.-. |+. ++++.++.+++ .+.++|++=+ .+++++..++|.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 35556666666 4788888776 67788999999999875
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0046 Score=69.06 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+++.+++|+|||||||||+.+.|+..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999999875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.017 Score=67.86 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0024 Score=68.33 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=30.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888875 679999999999999999874
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.16 Score=59.57 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+-+++|+++.|.||+|+|||||...++..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 35899999999999999999999888754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0063 Score=64.31 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.9
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.068 Score=59.24 Aligned_cols=27 Identities=52% Similarity=0.743 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..-++|.||+|+|||||.++++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999764
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0013 Score=77.64 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=28.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 455788888876 999999999999999998853
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0064 Score=69.78 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred CChhHhhHHHHHHHHh--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 037155 361 ISGGQKKRVTTGEMLV--GAAKVLLMDEISTGLDSST-TFQICKFLKQMVHIMD 411 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~--~~p~illLDEptsgLDs~t-~~~i~~~L~~l~~~~~ 411 (1403)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5666676 78999998 7899876 5667777777765433
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0023 Score=79.59 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=37.6
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 4566777766 899999999999999999999998653 23577776664
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0029 Score=67.63 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=30.0
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888877777 5799999999999999999974
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0078 Score=64.48 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 037155 199 MTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0066 Score=65.02 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.1 Score=61.11 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0091 Score=62.82 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999644
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0079 Score=72.05 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=30.4
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+++++. +|++++++||+||||||++..|++.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567777 8999999999999999999999998853
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0073 Score=70.82 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=28.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
+++.+++|+|++|||||||++.|+|.... ..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 45789999999999999999999984321 1245555443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0059 Score=69.87 Aligned_cols=34 Identities=29% Similarity=0.204 Sum_probs=29.9
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 188 ~~-vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++ +++..+ |++++++|++|+||||++..|++.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35 677766 99999999999999999999999875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=61.80 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|.++.|.|+|||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999866
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.009 Score=61.75 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|.||+||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999765
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0026 Score=74.98 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45778888876 899999999999999998863
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0073 Score=67.35 Aligned_cols=34 Identities=38% Similarity=0.731 Sum_probs=24.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++++++..++| ++|.||||+|||||+++|++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=60.80 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.02 Score=59.89 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0031 Score=73.65 Aligned_cols=39 Identities=33% Similarity=0.667 Sum_probs=34.1
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCChHHHHHHHhcccc
Q 037155 184 VQILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~--~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
..+++.++..++.|++ +++.||||+||||+++++++.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3577778888888988 99999999999999999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.012 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0088 Score=64.06 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.095 Score=63.35 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=33.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+.+-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 45668888778999999999999999999999888854
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.012 Score=69.75 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.0
Q ss_pred eEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 190 vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445677889999999999999999999986
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.15 Score=58.75 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.2
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.|..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999743
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.012 Score=64.72 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.28 Score=67.81 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=31.3
Q ss_pred ceeeeceE--EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 184 VQILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 184 ~~iL~~vs--~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+-|+.+- +-+++|+++.|.||||+|||||...++...
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577765 469999999999999999999998887643
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.25 Score=60.70 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=31.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+.+-|+.+-+-+++|+++.|.|+||+|||||+.-++-.
T Consensus 228 G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 228 GCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp SCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred chhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 34567777667999999999999999999999888754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=61.63 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998654
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.14 Score=60.58 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|-+=+++.||||+|||+|.+++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33447889999999999999999976
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.13 Score=61.65 Aligned_cols=28 Identities=50% Similarity=0.865 Sum_probs=24.1
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|-+=+++.||||+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4555668889999999999999999876
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=64.29 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.014 Score=61.30 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=27.7
Q ss_pred eEEEEEccCCCchHHHHHhhcCCCC-CceeEEEEEEcCc
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGY 949 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 949 (1403)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999987421 2223466666543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=60.87 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999755
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.016 Score=64.76 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999865
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.15 Score=62.64 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=26.9
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444444589999999999999999999877764
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.094 Score=62.91 Aligned_cols=28 Identities=43% Similarity=0.740 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|-+=++|.||||+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455567899999999999999999976
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.16 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
|=+++| ++.|.||||+|||||+.-++-
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHH
Confidence 557889 899999999999999665543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.018 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.019 Score=60.52 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.9
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999753
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.018 Score=60.42 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999999654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.0035 Score=72.80 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=31.9
Q ss_pred eEeeeeEEEEeCCeE--EEEEccCCCchHHHHHhhcCC
Q 037155 899 QLLHSVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367778888889988 999999999999999999984
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.014 Score=63.03 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.4
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999999999854
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.021 Score=60.87 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.015 Score=68.96 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4677889999999999999999999995
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.021 Score=59.78 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.42 Score=66.07 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=29.6
Q ss_pred eeceE--EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 187 LKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 187 L~~vs--~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|+.+- +-+++|+++.|.||||+|||||+..++...
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 44444 359999999999999999999999999765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.02 Score=59.99 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.024 Score=60.65 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999765
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.2 Score=59.99 Aligned_cols=28 Identities=50% Similarity=0.842 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|.+=+++.||||+|||+|.+++|+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455558899999999999999999876
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.054 Score=66.30 Aligned_cols=28 Identities=54% Similarity=0.833 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.018 Score=61.09 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999986653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.019 Score=60.33 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.023 Score=64.58 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..|.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=58.55 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 037155 199 MTLLLGPPGAGKTTLMLAL 217 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~L 217 (1403)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=58.81 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.018 Score=61.58 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCchHHHHHhhcCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.021 Score=60.76 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.085 Score=58.45 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++..-+.|.||+|+|||||.+.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455789999999999999999864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.021 Score=59.54 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|||||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999765
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.14 Score=59.93 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..-++|.||+|+|||||.++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445567899999999999999999764
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.022 Score=59.57 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+..++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999999543
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.044 Score=62.59 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
-+.+| ++-|.||+|+|||||.--++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 47889 89999999999999955443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1403 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-20 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-17 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-15 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-19 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-17 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-16 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-15 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-18 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-15 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-14 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-16 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-16 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-14 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-06 | |
| d1ak2a1 | 190 | c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co | 6e-04 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 0.001 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.003 | |
| d3adka_ | 194 | c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [ | 0.003 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.003 | |
| d1qf9a_ | 194 | c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi | 0.003 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (293), Expect = 1e-29
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 26/249 (10%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
+ L VS + G +T ++G +G+GK+TL++V+ G + G + + K + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIF----------VDEVME 1005
+ QT +T+ E+LL S +++ K + +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 1006 LVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
++L L D G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 137 FLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVP 1125
V G T + H+ + D L +M G++I G E + V
Sbjct: 192 HVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE-------EEIKNVL 242
Query: 1126 GVPKIKDAY 1134
PK+ + Y
Sbjct: 243 SDPKVVEIY 251
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.9 bits (220), Expect = 6e-20
Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 53/273 (19%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ + L VS V +TL++GP G+GK+TL+ + G L
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL--------------------- 54
Query: 243 EQASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
+ G++ + ++ P Q EMTV E L C G
Sbjct: 55 KADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNS 114
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
L + ++++ ++ +L+ L L D G+
Sbjct: 115 LFYKKWIPKEEEMVE---------------------KAFKILEFLKLSHLYDRKAGE--- 150
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
+SGGQ K V G L+ K+++MDE G+ I + ++ +T ++
Sbjct: 151 --LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLII- 206
Query: 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ D + ++ GQI+ G + ++
Sbjct: 207 EHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (280), Expect = 4e-28
Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 15/229 (6%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 945
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G + +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 946 ISGYPKKQETFARVS--GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV 1003
+ + T R G+ Q P +T E++ + + ++R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 1004 MELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+++ EL+ + N LS Q++R+ IA L NP II D+PT LD++
Sbjct: 129 LKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 1063 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110
+M+ ++ + G+TVV H I++ + ++ + + G V L
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 80.3 bits (198), Expect = 3e-17
Identities = 43/275 (15%), Positives = 92/275 (33%), Gaps = 65/275 (23%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
+ + LK+V+ +K ++GP G+GK+T++ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD---------------- 55
Query: 238 RIWKTEQASGKITYCGHELN-----EFVPQRTC--AYISQHDLHHGEMTVRETLDFSGRC 290
+ G++ + N E R ++ Q +T E ++
Sbjct: 56 -----KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL---- 106
Query: 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350
++ +S E+++ ++ + +A E +L
Sbjct: 107 ---PLIFKYRGAMSGEERRKRA---------LECLKMAELEERFANHKPNQL-------- 146
Query: 351 TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410
SGGQ++RV L ++L D+ + LDS T +I + LK++
Sbjct: 147 -----------SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 411 DVTMIVALLQPAPETYDLFDDIILISEGQIVYHGP 445
T++V + II + +G++
Sbjct: 196 GKTVVVVTHD--INVARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (275), Expect = 2e-27
Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 20/218 (9%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
+ + + G + L+G +GAGKTT + +AG R G I + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMEL-VELKPLRD 1014
+ P +T+YE+L+ A+ R D + K ++ + L LK
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLK 134
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1074
L G LS +++ L I L++ P ++ MDEP+ GL + V ++ G
Sbjct: 135 QLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 1075 RTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
T++ + A +++ G+++ G
Sbjct: 190 TTILLVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 75.7 bits (186), Expect = 1e-15
Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 58/269 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ +K + V ++ L+G GAGKTT + A+AG ++R K
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG----------------LVRAQKG 61
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+ + + + A + + E+TV E L
Sbjct: 62 KIIFNGQDITNKPAHV-INRMGIALVPEGRRIFPELTVYENLMMGAY------------- 107
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
K I ++ + L + G +S
Sbjct: 108 --------NRKDKEGIKRDLEWIF-------------SLFPRLKERLKQLGGT-----LS 141
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GG+++ + G L+ K+L+MDE S GL ++ + ++++ + T+++ Q A
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLV-EQNA 199
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ ++ GQIV G +L+
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 2e-26
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 15/226 (6%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 945
K G +Q L++VS G + ++G SGAGK+TL+ + R T G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 946 ISGYPKKQETFARVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM 1004
++ + + T AR G Q T++ ++ L + + K+R V E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 1005 ELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
LV L D+ LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1065 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+++ G T++ H+ + + D + ++ G +I
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 86.1 bits (213), Expect = 4e-19
Identities = 56/280 (20%), Positives = 94/280 (33%), Gaps = 67/280 (23%)
Query: 178 PSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLII 237
R +Q L +VS V ++ ++G GAGK+TL+ +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---------------- 55
Query: 238 RIWKTEQASGKITYCGHELNEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCL 291
G + G EL R I QH TV +
Sbjct: 56 -----RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 110
Query: 292 GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351
+ E ++ + +L L+GL D+
Sbjct: 111 NT----------PKDEVKRRV------------------------TELLSLVGLGDKHDS 136
Query: 352 MVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411
+ +SGGQK+RV L KVLL DE ++ LD +TT I + LK + +
Sbjct: 137 YPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 412 VTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+T+++ + + D + +IS G+++ V
Sbjct: 192 LTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (268), Expect = 2e-26
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 22/218 (10%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
++ ++ + G L+G SG GKTT + ++AG T G I + Y ++
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD- 77
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
R Q+ PH+T+YE++ + ++ + V EL++++ L +
Sbjct: 78 --RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR 132
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1074
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 133 YPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 1075 RTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
T + H D EA D + +M R G+++ G
Sbjct: 188 VTTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 97.9 bits (244), Expect = 3e-23
Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 70/289 (24%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ + ++ +K +LLGP G GKTT + +AG
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE--------------------- 56
Query: 243 EQASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
E G+I + ++ P+ R + + Q MTV E + F +
Sbjct: 57 EPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK--------- 107
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
+ E + + + +LL ++ + +
Sbjct: 108 -FPKDEIDKRV------------------------RWAAELLQIEELLNRYPAQ-----L 137
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++RV +V VLLMDE + LD+ + +K++ + VT I
Sbjct: 138 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
E + D I +++ GQ++ G V + P VA F+
Sbjct: 198 V-EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 14/216 (6%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ 953
+ ++L +S G + L+G +GAGKTT + +++ + + G + + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
++ Y + ++ E L + A SS + ++ V+ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
G T++ + H ++ D + L+ G ++ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 80.0 bits (197), Expect = 4e-17
Identities = 52/294 (17%), Positives = 98/294 (33%), Gaps = 72/294 (24%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+ILK +S ++ + L+GP GAGKTT + ++ + +
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS------------------ 55
Query: 243 EQASGKITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
SG +T G + E + + +Y+ + + M E L F
Sbjct: 56 ---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS------- 105
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
EI+ + + ++ GL V
Sbjct: 106 -------------SSSEIEEMV--------------ERATEIAGLGEKIKDRVS-----T 133
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
S G +++ L+ ++ ++DE ++GLD ++ K LKQ ++
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS--SH 191
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474
E L D I LI G IV G + + + + + + + +EV
Sbjct: 192 NMLEVEFLCDRIALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (259), Expect = 7e-25
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLP 1020
+C Q P T+ E++++ + K ++ + + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1080
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1081 IHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ D++L++ + G + G
Sbjct: 215 TSKME--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.6 bits (196), Expect = 1e-16
Identities = 52/349 (14%), Positives = 110/349 (31%), Gaps = 106/349 (30%)
Query: 103 LMESILRIVEEDNERFLTRIRHRTDRVGIEIPKIEVRYDHLSVDGDVHVGSRALPTLLNV 162
+ME++ EE L +++ + V + HL + G+
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN-------------- 49
Query: 163 ALNTIESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222
+LK+++ ++ M + G G+GKT+L++ + G+L
Sbjct: 50 ----------------------PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL- 86
Query: 223 ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 282
E + G I + G F Q + T++E
Sbjct: 87 --------------------EASEGIIKHSGR--VSFCSQFSWIM---------PGTIKE 115
Query: 283 TLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342
+ F + + +KA + +
Sbjct: 116 NIIFGVS-----------------------YDEYRYKSVVKACQLQ-----------QDI 141
Query: 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKF 402
+T++G+ +SGGQ+ R++ + A + L+D LD T Q+ +
Sbjct: 142 TKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 200
Query: 403 LKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ + T I+ + E D I+++ +G ++G +
Sbjct: 201 CVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (257), Expect = 8e-25
Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 28/229 (12%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQE 954
++L VS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 955 TFARVS-----------GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV 1003
Q H+T+ E+++ + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+ V + LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1064 MRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
+R ++ + G+T+V H ++ A ++ + G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 75.3 bits (185), Expect = 3e-15
Identities = 50/290 (17%), Positives = 105/290 (36%), Gaps = 54/290 (18%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
++LK VS + + ++G G+GK+T + +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE--------------------- 52
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLA 301
+ + G I G +N + ++ + L L V + L +
Sbjct: 53 KPSEGAIIVNGQNINLVRDKDGQLKVAD----------KNQLRLLRTRLTMVFQHFNLWS 102
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
++ E ++A ++ + ++ + L +G+D A + +
Sbjct: 103 HMTVLENV--------MEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHL 150
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++RV+ L VLL DE ++ LD ++ + ++Q+ TM+V +
Sbjct: 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM 209
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQ 471
+ +I + +G+I G + V F P+ + FL+
Sbjct: 210 G-FARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 99.5 bits (248), Expect = 1e-23
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 14/220 (6%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953
+ L +++ G AL+G SG+GK+T+ ++ EG I + G+ ++
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLRE 81
Query: 954 ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
+ Q ++ R + M+ +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKM 138
Query: 1011 PLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
D ++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 139 DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 1070 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ RT + H+ S E DE+++++ G ++ G
Sbjct: 198 -LQKNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 84.5 bits (209), Expect = 2e-18
Identities = 55/275 (20%), Positives = 108/275 (39%), Gaps = 64/275 (23%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
R+V L++++ + + L+G G+GK+T+ +
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY------------------- 65
Query: 241 KTEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
+ G I GH+L E+ + A +SQ+ + Y
Sbjct: 66 --DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI------------AY 111
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDE 356
E SR + + +A +A D++ K+ GLD T++G E
Sbjct: 112 ARTEEYSREQIE-------------EAARMAY-----AMDFINKMDNGLD----TIIG-E 148
Query: 357 MRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+SGGQ++R+ L+ + +L++DE ++ LD+ + I L ++ + T +V
Sbjct: 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV 206
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ T + D+I+++ +G IV G +L
Sbjct: 207 IAHR--LSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 97.7 bits (243), Expect = 2e-23
Identities = 36/189 (19%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR 958
+L ++ G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
+ + I +++ + L A L K K + + +E VE+ L+
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1077
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1078 VCTIHQPSI 1086
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 73.4 bits (180), Expect = 4e-15
Identities = 31/238 (13%), Positives = 78/238 (32%), Gaps = 65/238 (27%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
S D +L+ ++ ++ + GP G GKTTL+ ++ L
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL----------------- 51
Query: 239 IWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
+ G+I Y G + + + ++ + + +++V + L GV
Sbjct: 52 ----KPLKGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 105
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
+ + L+ + + +
Sbjct: 106 EIMDA------------------------------------LESVEVLDLKKKL------ 123
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+S G +RV L+ A++ ++D+ +D + ++ K + +++ + +I
Sbjct: 124 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 3e-23
Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 28/219 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFA 957
L +SG R G + L+G +GAGK+TL+ +AG +G +G I+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
Y Q ++ L K R +++V + L
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST 123
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
G +V + H + L+K GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 71.5 bits (175), Expect = 3e-14
Identities = 52/276 (18%), Positives = 86/276 (31%), Gaps = 78/276 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
L +SG V+ + L+GP GAGK+TL+ +AG
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----------------------MTSG 51
Query: 246 SGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G I + G L + AY+SQ V L
Sbjct: 52 KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL---------------- 95
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
Q K E+ + V L LD +S
Sbjct: 96 ------HQHDKTRTELL-----------------NDVAGALALDDKLGRSTNQ-----LS 127
Query: 363 GGQKKRVTTGEMLVGAA-------KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415
GG+ +RV +++ ++LL+DE LD + + K L + + ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIV 186
Query: 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
++ T L+ G+++ G R+ VL
Sbjct: 187 MSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 96.1 bits (239), Expect = 1e-22
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 13/219 (5%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 950
D +L +++ + + G + ++G SG+GK+TL ++ + + I G+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLAL 69
Query: 951 KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
R G Q D + ++ +++ + V+ + + +
Sbjct: 70 ADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK- 184
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ GRTV+ H+ S + D +++M+ G+++ G
Sbjct: 185 ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (188), Expect = 7e-16
Identities = 48/272 (17%), Positives = 92/272 (33%), Gaps = 57/272 (20%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
K IL +++ +K + ++G G+GK+TL +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--------------- 56
Query: 240 WKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 299
+G++ GH+L P + +
Sbjct: 57 ------NGQVLIDGHDLALADPNWLRRQVGVVLQDNV----------------------- 87
Query: 300 LAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRR 359
L S + P ++ + A +AG + + E
Sbjct: 88 LLNRSIIDNISLANPGMSVEKVIYAAKLAG---------AHDFISELREGYNTIVGEQGA 138
Query: 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419
G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++ T+I+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAH 196
Query: 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ T D II++ +G+IV G +L
Sbjct: 197 R--LSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.4 bits (240), Expect = 2e-22
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 11/218 (5%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ 953
++ +L ++ + G A +G+SG GK+TL++++ G I I G+ K
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKD 84
Query: 954 ETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
R Q D T+ E++L +V + + + L
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLPQ 142
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
D VG GV LS Q++RL+IA + NP I+ +DE TS LD + +I+ + +
Sbjct: 143 GYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-L 200
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
RT + H+ S D++++++ G ++ G
Sbjct: 201 SKDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 87.9 bits (218), Expect = 1e-19
Identities = 56/274 (20%), Positives = 101/274 (36%), Gaps = 63/274 (22%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
+ ILKD++ ++ +G G GK+TL+ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY------------------- 68
Query: 241 KTEQASGKITYCGHELNEFVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
+ SG+I GH + +F+ I Q D TV+E +
Sbjct: 69 --DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG----------- 115
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL-LGLDICADTMVGDEM 357
+P + ++A +A D+++ L G DT VG E
Sbjct: 116 --------------RPTATDEEVVEAAKMAN-----AHDFIMNLPQGY----DTEVG-ER 151
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417
+SGGQK+R++ + + +L++DE ++ LD + I + L + D T ++
Sbjct: 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIV 209
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ T D I++I G IV G ++
Sbjct: 210 AHR--LSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 14/214 (6%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA 957
+ + ++ G +G SG GK+TL+ ++AG +T + + I A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPA 70
Query: 958 RVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
G Q+ PH+++ E++ + L + +R V++V E+++L L D
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRK 127
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1075
LS QR+R+ I LVA PS+ +DEP S LDA + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1076 TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
T++ H D+++++ GRV G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 78.5 bits (193), Expect = 1e-16
Identities = 54/289 (18%), Positives = 101/289 (34%), Gaps = 70/289 (24%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+V + KD++ + + +GP G GK+TL+ +AG + I
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG----------------LETITSG 55
Query: 243 EQASGKITYCGHELNEFVPQRTC-AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
+ + +N+ P + Q + ++V E + F + G
Sbjct: 56 D-----LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-------- 102
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
+ Q + + V ++L L D +
Sbjct: 103 --KKEVINQRV------------------------NQVAEVLQLAHLLDRKPKA-----L 131
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGGQ++RV G LV V L+DE + LD++ Q+ + ++ + TMI
Sbjct: 132 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 191
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
E L D I+++ G++ G + + P + VA F+
Sbjct: 192 V-EAMTLADKIVVLDAGRVAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.1 bits (226), Expect = 9e-21
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 12/220 (5%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYP 950
+ +L ++ RPG +TAL+G +G+GK+T+ +L + TGG + + Y
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 951 KKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK 1010
+ R Q + +L E++ Y + + + T + L
Sbjct: 83 HRY--LHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVK-SGAHSFISGLP 138
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
D V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + +
Sbjct: 139 QGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 197
Query: 1071 VD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ R+V+ S + E D +L ++ GG + G
Sbjct: 198 PERYSRSVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (222), Expect = 3e-20
Identities = 48/274 (17%), Positives = 104/274 (37%), Gaps = 60/274 (21%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
+ DV +L+ ++ ++P +T L+GP G+GK+T+ L
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY------------------- 64
Query: 241 KTEQASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
+ G++ G L ++ + R A + Q + +++E + +
Sbjct: 65 --QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY----------- 110
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
G+ P ++ A +G + GL DT V +
Sbjct: 111 -------------GLTQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAG 149
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417
+ +SGGQ++ V L+ VL++D+ ++ LD+++ Q+ + L + ++++
Sbjct: 150 SQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 208
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ D I+ + G I G ++E
Sbjct: 209 TQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 90.0 bits (223), Expect = 2e-20
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 22/218 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFAR 958
+ +S + G L+G SG GKTT + ++AG + G I K+ P+K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 959 VS---GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
Q+ PH+T+Y+++ + LR + +R V EV EL+ L L +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNR 135
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1074
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 KPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 1075 RTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYAGP 1109
T + H D EA D + +M R G + G
Sbjct: 191 VTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 76.5 bits (188), Expect = 7e-16
Identities = 57/288 (19%), Positives = 98/288 (34%), Gaps = 62/288 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+V ++++S VK +LLGP G GKTT + +AG + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG----------------LEEPSRG 58
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+ I + + + + L L +
Sbjct: 59 Q-----IYIGDKLVADPEKGIFVPPKDRDIAMVFQSY---ALYPHMTVYDNIAFPLKLRK 110
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+ R+E Q + V +LLGL + + +S
Sbjct: 111 VPRQEIDQRV------------------------REVAELLGLTELLNRKPRE-----LS 141
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQ++RV G +V +V LMDE + LD+ ++ LK++ + VT I
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
E + D I +++ G + G D V + P VA F+
Sbjct: 202 -EAMTMGDRIAVMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.9 bits (223), Expect = 2e-20
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 12/218 (5%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPK 951
+D Q+L +S +P + A G SG GK+T+ +L + T G I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ + G+ Q D+ F +E + +
Sbjct: 72 EN--WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL 129
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
+ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + +
Sbjct: 130 --NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
GRT + H+ S D++ +++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 78.0 bits (192), Expect = 2e-16
Identities = 55/269 (20%), Positives = 93/269 (34%), Gaps = 60/269 (22%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
QIL+D+S +P+ + GP G GK+T+ L +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY---------------------QP 54
Query: 245 ASGKITYCGHELNEFVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+G+IT G ++ + + I D T+RE L + + +
Sbjct: 55 TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLD 114
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
L+ PD +T VG E IS
Sbjct: 115 LAFARSFVENMPDQL--------------------------------NTEVG-ERGVKIS 141
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQ++R+ + K+L++DE + LDS + + K L ++ T +V +
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR-- 197
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
T D I I +GQI G + ++
Sbjct: 198 LSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.4 bits (216), Expect = 1e-19
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQE 954
++ L +V+ G ++G SGAGKTT M ++AG + G + D ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 955 T--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
R G QT P++T +E++ + S + +KR V+EV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1071
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
G T++ H P+ DIF D + ++ G+++ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.4 bits (177), Expect = 2e-14
Identities = 54/297 (18%), Positives = 105/297 (35%), Gaps = 75/297 (25%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
KK V L +V+ ++ +LGP GAGKTT M +AG +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--------------- 58
Query: 240 WKTEQASGKITYCGHELNEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGV 293
+G++ + + R + Q + +T E + F + +
Sbjct: 59 ------TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
R++ + V K+L + +
Sbjct: 113 SKEE-------IRKR---------------------------VEEVAKILDIHHVLNHFP 138
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413
R +SG Q++RV LV +LL+DE + LD+ +K++ + VT
Sbjct: 139 -----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
++V PA + + + D + ++ +G++V G +++ + P VA +
Sbjct: 194 LLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.3 bits (187), Expect = 8e-16
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKKQETFARV 959
L ++S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
+ Q PH+ + ++L + ++ + KR V + ++++ L D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDPKR---VLDTARDLKIEHLLDRN--- 124
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1078
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1079 CTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
H + + D + ++ G++I G
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 69.7 bits (170), Expect = 1e-13
Identities = 55/293 (18%), Positives = 102/293 (34%), Gaps = 73/293 (24%)
Query: 179 SKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIR 238
S+K L ++S V+ ++LGP GAGKT + +AG
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG----------------FHV 51
Query: 239 IWKTEQASGKITYCGHELNEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY 297
I G ++ + P++ A++ Q+ M V++ L+F R +
Sbjct: 52 PDSGR-----ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
+L + L ++ D
Sbjct: 107 RVLD-------------------------------------TARDLKIEHLLDRNP---- 125
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417
+SGG+++RV LV K+LL+DE + LD T + L + +T++
Sbjct: 126 -LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
E + D I ++ +G+++ G + + F+ P VA F+
Sbjct: 185 THDQT-EARIMADRIAVVMDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.3 bits (182), Expect = 4e-15
Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 27/234 (11%)
Query: 910 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARVSGYCEQT 966
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026
PH+++Y ++ Y +V+ +R V E+ E + + L D LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1085
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1086 IDIFEAFDELLLMKRGGRVIYAGP----LGRESHKLIEYFEA---VPGVPKIKD 1132
+ DE+ +M GR++ G ++ ++ E+ A + V KI D
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.6 bits (144), Expect = 3e-10
Identities = 47/270 (17%), Positives = 91/270 (33%), Gaps = 73/270 (27%)
Query: 202 LLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261
LLGP GAGK+ + +AG + + G++ G ++ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIV---------------------KPDRGEVRLNGADITPLPP 67
Query: 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDA 320
+R ++ Q ++V + + R + R + E+
Sbjct: 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM----------------- 110
Query: 321 FMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK 380
+ + D +SGG+++RV LV +
Sbjct: 111 ------------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146
Query: 381 VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQI 440
+LL+DE + +D T + + L+ + DV ++ E L D++ ++ G+I
Sbjct: 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRI 205
Query: 441 VYHGPRDNVLEFFEQMGFKCPERKGVADFL 470
V G + + VA+FL
Sbjct: 206 VEKGKLKELFS---------AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 24/202 (11%), Positives = 46/202 (22%), Gaps = 42/202 (20%)
Query: 915 ALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSP 971
+ G G GKTTL+ + ++ G+ +++ K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031
+ KK+ + +
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1091
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1092 FDELLLMKRGGRVIYAGPLGRE 1113
E+ + G +I P R+
Sbjct: 146 VKEIRRLP-GAVLIELTPENRD 166
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Score = 40.3 bits (93), Expect = 6e-04
Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 23/162 (14%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH 254
K R +LLGPPGAGK T A KL +N V + ++ + + GK
Sbjct: 2 KGVRA-VLLGPPGAGKGT----QAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATM 56
Query: 255 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY----------------- 297
+ + V + + +L LD R +
Sbjct: 57 DAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF 116
Query: 298 -ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338
+ L RR + I D A + +T+ + +Y
Sbjct: 117 SIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEY 158
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 38.9 bits (89), Expect = 0.001
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKL-------HENLRVRFQSNKFLIIRIWKTEQASGKIT 250
++ L +G PG+GK+T K ++ R +++ + ++
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62
Query: 251 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL----AELSRR 306
+ + R + + G +++ EL +R
Sbjct: 63 MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122
Query: 307 EKQQGIKPDPE 317
++G K P
Sbjct: 123 NSKRGTKAVPI 133
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.003
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLHEN 224
+R L GPPG GKTTL+ + L +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSS 28
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.4 bits (88), Expect = 0.003
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
+K S++ ++G PG+GK T K+ + S L+ + A GK+
Sbjct: 5 LKKSKIIFVVGGPGSGKGT----QCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEI 60
Query: 254 HELNEFVPQRTCAYISQHDLHH 275
E + VP T + + +
Sbjct: 61 MEKGQLVPLETVLDMLRDAMVA 82
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 38.8 bits (89), Expect = 0.003
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 175 HLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV 227
+++ L V+ LL G PG+GKT+L A+ + N+ V
Sbjct: 10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Score = 38.0 bits (87), Expect = 0.003
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV 260
+LG PG+GK T + + S L+ + ++ G++ + E V
Sbjct: 10 FVLGGPGSGKGT----QCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 261 PQRTCAYISQHDLHH 275
P + ++ +
Sbjct: 66 PSIVTVKLLKNAIDA 80
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.004
Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 8/129 (6%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHEN------LRVRFQSNKFLIIRIWKTEQASGK 248
+ +L+G G+GK+ + +A +LH L R K +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW 63
Query: 249 ITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 308
+ + I L + + + + + ++++ R +
Sbjct: 64 LQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIES--RLKA 121
Query: 309 QQGIKPDPE 317
++G +
Sbjct: 122 RKGHFFKTQ 130
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1403 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.58 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.42 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.33 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.26 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.53 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.37 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.99 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.87 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.37 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.05 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.97 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.92 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.73 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.56 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.45 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.27 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.27 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.23 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.17 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.06 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.0 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.99 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.99 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.91 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.77 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.77 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.68 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.6 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.56 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.56 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.55 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.53 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.51 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.28 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.26 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.25 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.14 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.06 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.0 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.97 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.85 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.84 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.83 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.78 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.78 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.74 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.72 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.7 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.69 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.67 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.65 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.64 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.61 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.61 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.59 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.53 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.52 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.45 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.31 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.27 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.25 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.22 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.19 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.16 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.15 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.14 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.14 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.09 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.04 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.01 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.97 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.92 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.9 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.88 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.87 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.87 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.81 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.79 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.77 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.73 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.73 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.68 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.67 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.63 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.56 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.56 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.49 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.47 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.46 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.43 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.43 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.39 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.38 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.35 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.34 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.32 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.31 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.3 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.29 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.23 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.17 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.13 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.09 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.08 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.03 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.97 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.91 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.9 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.89 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.83 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.8 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.67 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.61 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.57 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.56 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.54 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.42 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.38 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.25 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.17 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.14 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.08 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.06 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.03 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.02 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.89 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.89 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.84 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.72 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.65 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.57 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.53 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.5 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.4 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.4 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.36 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.34 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.33 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.32 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.28 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.25 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.06 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.03 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.95 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.95 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.91 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.84 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.71 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.66 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.61 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.52 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.51 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.49 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.48 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.47 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.45 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.4 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.33 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.31 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.3 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.29 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.12 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.06 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.98 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.91 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.83 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.81 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.79 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.58 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.58 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.56 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.52 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.52 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.29 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.27 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.18 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.14 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.14 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.13 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.12 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.11 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.03 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.87 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.84 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.82 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.77 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.72 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.69 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.58 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.52 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.38 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.3 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.28 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.27 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.25 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.25 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.22 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.11 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.08 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.05 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.03 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.02 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.97 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.94 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.92 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.88 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.86 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.85 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.85 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.84 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.8 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.58 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.58 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.49 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.47 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.46 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.45 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.44 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.38 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.37 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.31 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 87.26 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.22 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.16 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.12 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.1 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.05 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.05 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.92 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.83 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.76 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.72 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.7 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.66 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.6 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.53 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.45 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.45 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.42 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.37 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.29 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.23 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.14 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.14 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.12 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.07 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.02 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.02 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.95 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.92 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.91 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.89 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.88 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.88 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.86 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.65 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.65 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.59 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.54 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.46 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.46 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.45 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.44 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.36 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.08 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.04 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.99 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.95 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.85 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.61 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.58 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.54 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 84.47 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.39 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.25 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.19 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 84.09 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.08 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.01 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.89 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.8 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.75 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.67 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.46 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.37 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.26 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.24 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.21 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.12 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.11 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.05 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.89 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 82.6 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.54 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.52 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.48 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 82.41 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.41 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 82.34 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.28 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.27 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.22 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.11 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.96 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.86 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 81.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.29 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.26 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.19 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 81.06 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 80.48 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.28 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 80.06 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.6e-45 Score=403.16 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=176.8
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++.. ...+|.+|||+|++.++|++
T Consensus 16 yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 93 (239)
T d1v43a3 16 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93 (239)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGGTEEEEEC------CC
T ss_pred ECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceecccCCcccceEEEEeechhhcccc
Confidence 3467899999999999999999999999999999999998764 48999999998754 33456799999999999999
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+||+.|.+.++ +.+.++.+++++++++.++|.+.+|+.+ .+|||||||||+|||||+.+|+||+|||||+
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts 165 (239)
T d1v43a3 94 TVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 165 (239)
T ss_dssp CHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred hHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHhhhccCCCceeecCCcc
Confidence 9999999987665 3566778888999999999999888864 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+.++..+++.|+++.++ |+|||++|||++ ++.+.|||+++|++ |++++.|++
T Consensus 166 ~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 221 (239)
T d1v43a3 166 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 221 (239)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999754 999999999987 68899999999985 899999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-46 Score=403.70 Aligned_cols=204 Identities=26% Similarity=0.371 Sum_probs=146.4
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~l 973 (1403)
++++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++... ..+|.+|||+|++.++|.+
T Consensus 10 yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~ 87 (232)
T d2awna2 10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87 (232)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCTTSCGGGTCEEEECSSCCC----
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEECCCCchhhceeeeeccccccccch
Confidence 3567899999999999999999999999999999999998764 489999999987542 3457799999999999999
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+||+.|+..++. .+.++.+++++++++.++|.+..|+.+. .|||||||||+|||||+.+|++|+|||||+
T Consensus 88 tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPts 159 (232)
T d2awna2 88 SVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 159 (232)
T ss_dssp --------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTT
T ss_pred hHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999999876653 3345566779999999999999988754 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1054 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+.++..+++.|+++. +.|+|||++||+++ ++.+.|||+++|. +|++++.|++
T Consensus 160 ~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 160 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 999999999999999986 45999999999986 6888999999998 5899999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.6e-45 Score=399.63 Aligned_cols=204 Identities=26% Similarity=0.364 Sum_probs=182.7
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hhcceeeEeecCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TFARVSGYCEQTD 967 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~ 967 (1403)
+++.++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.+|||+|++
T Consensus 13 yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~ 90 (240)
T d1g2912 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC
T ss_pred ECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEEecccchhhhcccccccceecccch
Confidence 3457799999999999999999999999999999999998764 489999999875321 1246799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 968 ~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
.++|.+||+||+.|...++. .+.++.+++++++++.++|.+..|+.+ ..|||||||||+|||||+.+|+|||
T Consensus 91 ~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iLl 162 (240)
T d1g2912 91 ALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFL 162 (240)
T ss_dssp CCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred hhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999987763 456778888999999999999888874 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||||+|||+.++..+++.|+++.++ |.|||++|||++ ++...|||+++|.+ |++++.|++
T Consensus 163 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~ 224 (240)
T d1g2912 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (240)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred ecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999765 999999999986 68889999999984 899999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.5e-45 Score=399.06 Aligned_cols=215 Identities=25% Similarity=0.389 Sum_probs=188.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++.+|++++++ .++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 4 IIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVA 70 (242)
T ss_dssp EEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEee
Confidence 56777776542 1346799999999999999999999999999999999998764 4899999998753
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 037155 953 Q------ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 953 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1026 (1403)
. ...+|.+|||+|++.++|++||+||+.|+...+ ..+.++.+++++++++.+||.+..|..++ .||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LS 142 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELS 142 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred cCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChh-----hCC
Confidence 2 223567999999999999999999999987544 45667788889999999999998888754 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |+++
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv 220 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLV 220 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999654 999999999986 68899999999985 8999
Q ss_pred EecCC
Q 037155 1106 YAGPL 1110 (1403)
Q Consensus 1106 ~~g~~ 1110 (1403)
+.|++
T Consensus 221 ~~g~~ 225 (242)
T d1oxxk2 221 QVGKP 225 (242)
T ss_dssp EEECH
T ss_pred EEcCH
Confidence 99985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-45 Score=400.35 Aligned_cols=208 Identities=25% Similarity=0.360 Sum_probs=148.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
++++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.+||+++.+..+
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p---------------------~sG~I~i~g~~i~~~~~~ 70 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---------------------TSGDLFIGEKRMNDTPPA 70 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEESSSCCTTSCGG
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---------------------CCCEEEECCEECCCCchh
Confidence 35799999999999999999999999999999999999865 58999999999877654
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+|.+|||+|++.+++.+||+||+.|+.++++... . +...+++.+++
T Consensus 71 ~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--------------------~--------------~~~~~v~~~l~ 116 (232)
T d2awna2 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK--------------------E--------------VINQRVNQVAE 116 (232)
T ss_dssp GTCEEEECSSCCC-----------------------------------------C--------------HHHHHHHHHHH
T ss_pred hceeeeeccccccccchhHHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHH
Confidence 5779999999999999999999999876554210 1 11234677899
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..|..+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+|++.| .
T Consensus 117 ~~~l~~~~~~~~~~-----LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d 190 (232)
T d2awna2 117 VLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-D 190 (232)
T ss_dssp HC--------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-C
T ss_pred hCCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-C
Confidence 99999999998876 99999999999999999999999999999999999999999999998888889888765 5
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
..++..++|+|++|++|+++++|+++++.+
T Consensus 191 ~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 191 QVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 568999999999999999999999999853
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-44 Score=392.28 Aligned_cols=219 Identities=23% Similarity=0.385 Sum_probs=186.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|++.+++.. .....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC--CcceeEECCEEcC
Confidence 4566776554321 1234689999999999999999999999999999999998764 4899999999864
Q ss_pred h---hh---h-cceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCC
Q 037155 953 Q---ET---F-ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNG 1024 (1403)
Q Consensus 953 ~---~~---~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~ 1024 (1403)
. .. + ++.+|||+|++.++|.+||+||+.++..++.....+.+++.+++.++++.++|.+ ..+..+ .+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hh
Confidence 3 11 2 3469999999999999999999999988766556677788888999999999975 466653 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|||||||||+|||||+.+|+||||||||+|||+.++..|+++|+++.++ |+|||++|||++ +.+.|||+++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999755 999999999975 4589999999985 89
Q ss_pred EEEecCC
Q 037155 1104 VIYAGPL 1110 (1403)
Q Consensus 1104 ~~~~g~~ 1110 (1403)
+++.|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9998864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-44 Score=396.49 Aligned_cols=218 Identities=23% Similarity=0.313 Sum_probs=187.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|++.++.. .....++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~---------~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQ---------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEEC---------SSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEeEEEEeCC---------CCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc--cCCceEEcCeEee
Confidence 456677654431 11234689999999999999999999999999999999998764 4899999999863
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 037155 953 Q------ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 953 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1026 (1403)
. ..+++.+|||+|++.++|.+||+||+.+...++. .+.++.+++++++++.+||.+.+|+.+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1245679999999999999999999999887653 344566778999999999999888874 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++...|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 57789999999985 8999
Q ss_pred EecCCC
Q 037155 1106 YAGPLG 1111 (1403)
Q Consensus 1106 ~~g~~~ 1111 (1403)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
Confidence 999874
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.3e-45 Score=397.91 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=176.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
++.+|+|||+.|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++....+
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p---------------------~sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---------------------TEGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGG
T ss_pred CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---------------------CCCEEEEcceecccCCcc
Confidence 35799999999999999999999999999999999999865 58999999999876554
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+|.+|||+|++.+++.+||+||+.|+++.++... .+ .+.+++++++
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~ 122 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK----------DE------------------------IDKRVRWAAE 122 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCH----------HH------------------------HHHHHHHHHH
T ss_pred cceEEEEeechhhcccchHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHH
Confidence 4679999999999999999999999877665321 11 1235678899
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..|..+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+|++.| .
T Consensus 123 ~~~l~~~~~~~~~~-----LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH-d 196 (239)
T d1v43a3 123 LLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-D 196 (239)
T ss_dssp HTTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-C
T ss_pred HcCChhhhcCChhh-----CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeC-C
Confidence 99999999888765 99999999999999999999999999999999999999999999998877889888765 4
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
..++.++||+|++|++|+|+++|+++++.
T Consensus 197 ~~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 197 QVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 55899999999999999999999999984
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.2e-45 Score=397.69 Aligned_cols=207 Identities=22% Similarity=0.312 Sum_probs=181.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
+..+|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++....
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p---------------------~~G~I~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---------------------STGELYFDDRLVASNGKL 75 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---------------------SEEEEEETTEEEEETTEE
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC---------------------CCceEEECCEEeecCchh
Confidence 46799999999999999999999999999999999999865 5899999999874322
Q ss_pred ----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 ----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 ----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.+|.+|||+|++.++|.+||+||+.|+.+.++... . +.+.++
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~----------~------------------------~~~~~v 121 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK----------E------------------------EIRKRV 121 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCH----------H------------------------HHHHHH
T ss_pred hcchhhccceEEeccccccccccHHHHhhhhhHhhcCCH----------H------------------------HHHHHH
Confidence 24679999999999999999999999877654321 0 112346
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+++++.+||++..|..+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..|.|+|+
T Consensus 122 ~~~l~~~gL~~~~~~~p~~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~ 196 (242)
T d1oxxk2 122 EEVAKILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (242)
T ss_dssp HHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHhhcChHhhhhCChhh-----CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEE
Confidence 7889999999999988876 99999999999999999999999999999999999999999999998777888888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|. ..++.++||+|++|++|+|++.|+++++.
T Consensus 197 vTHd-~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 197 VSHD-PADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp EESC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EECC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7654 55899999999999999999999999984
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.7e-44 Score=390.92 Aligned_cols=197 Identities=23% Similarity=0.300 Sum_probs=176.7
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.. ...++.+|||+|++.++|++||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEeccccchhHhcceeeccccccCccccHHH
Confidence 489999999999999999999999999999999998764 48999999998754 334567999999999999999999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
|+.|+..++.... .++++++++.++|.+..|+.++ .|||||||||+|||||+.+|+||||||||+|||+
T Consensus 92 nl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 92 NLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp HHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred HHHHHHhhccccH------HHHHHHHHHHhcchhhHhCChh-----hCCHHHhcchhhhhhhhccCCceeecCCCcCCCH
Confidence 9999988765321 2358899999999999988754 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1058 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
.++..+++.|+++.+ .|.|||++||+++ ++.+.|||+++|++ |++++.|+.
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999965 5999999999986 68889999999985 899999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-44 Score=393.08 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=179.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QR 263 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~ 263 (1403)
.+|+||||.|++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.+..+ +|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p---------------------~sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---------------------DSGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC---------------------CCCEEEEccEeccccchhHh
Confidence 489999999999999999999999999999999999865 58999999999987654 46
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.+|||+|++.++|.+||+||+.|+.+.++... ..+++.+++.+
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~ 115 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD-------------------------------------PKRVLDTARDL 115 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHT
T ss_pred cceeeccccccCccccHHHHHHHHHhhccccH-------------------------------------HHHHHHHHHHh
Confidence 79999999999999999999999865443210 11356678899
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
||++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.| ...
T Consensus 116 ~l~~~~~~~~~~-----LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~ 189 (229)
T d3d31a2 116 KIEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQT 189 (229)
T ss_dssp TCTTTTTSCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHH
T ss_pred cchhhHhCChhh-----CCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC-CHH
Confidence 999999988876 99999999999999999999999999999999999999999999998877888888765 455
Q ss_pred hHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 424 ETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 424 ~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.+++|+|++|++|+++++|+++++.
T Consensus 190 ~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 190 EARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999999999999999999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-44 Score=394.23 Aligned_cols=207 Identities=28% Similarity=0.361 Sum_probs=181.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
++++|+|||+.|++||+++|+||||||||||+++|+|.++| .+|+|.++|.++....
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p---------------------~sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---------------------SRGQIYIGDKLVADPEKG 73 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEEEEEGGGT
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---------------------CCCEEEECCEEecccchh
Confidence 35799999999999999999999999999999999999865 5899999998764322
Q ss_pred -----ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 261 -----PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 261 -----~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
.+|.+|||+|++.++|.+||+||+.|+.+.++... .+ ...+
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~----------~e------------------------~~~~ 119 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR----------QE------------------------IDQR 119 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCH----------HH------------------------HHHH
T ss_pred hhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCH----------HH------------------------HHHH
Confidence 14679999999999999999999999876654311 11 1235
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
++++++.+||++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+|
T Consensus 120 v~~~l~~~~l~~~~~~~p~~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi 194 (240)
T d1g2912 120 VREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194 (240)
T ss_dssp HHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEE
Confidence 67889999999999988876 9999999999999999999999999999999999999999999999887788888
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.| ..+++.++||+|++|++|+|++.|+++++.
T Consensus 195 ~vTH-d~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 195 YVTH-DQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEcC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8765 556899999999999999999999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-44 Score=391.52 Aligned_cols=206 Identities=27% Similarity=0.331 Sum_probs=181.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|||+.|++||+++|+|||||||||||++|+|..+| .+|+|.++|+++.....
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p---------------------~sG~I~~~g~~i~~~~~~ 75 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---------------------TEGSVLVDGQELTTLSES 75 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEECTTCHH
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc---------------------cCCceEEcCeEeeeCChh
Confidence 45799999999999999999999999999999999999865 58999999999876543
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+|||+|++.+++.+||+||+.|+.+..+... .+ ...++
T Consensus 76 ~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~--------------------~~--------------~~~~v 121 (240)
T d3dhwc1 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK--------------------DE--------------VKRRV 121 (240)
T ss_dssp HHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCT--------------------TH--------------HHHHH
T ss_pred hhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCH--------------------HH--------------HHHHH
Confidence 3579999999999999999999999876654321 11 12246
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..|..+++ |||||||||+|||||+.+|++||+||||+|||+.++.+|++.|+++.++.|.|+|+
T Consensus 122 ~~~L~~vgL~~~~~~~~~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~ 196 (240)
T d3dhwc1 122 TELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196 (240)
T ss_dssp HHHHHHHSTTTTTSSCBSC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHcCCchhhhCChhh-----CCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEE
Confidence 7789999999999888866 99999999999999999999999999999999999999999999998877888888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
+.| ...++..+||+|++|++|+|++.|+++++
T Consensus 197 vTH-dl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 197 ITH-EMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp EBS-CHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred EcC-CHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 765 55588899999999999999999999987
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.2e-43 Score=385.06 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=183.9
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh--hhhcceeeEeecCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ--ETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++++++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|++..+ ...++.+|||||++.++++
T Consensus 12 yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred ECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEecccChHHHHhhEeEeeeccccCCC
Confidence 4568899999999999999999999999999999999998764 48999999998643 3456789999999999999
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+|+.||+.|.+.++. ....+..+.++++++.++|.+..+..++ .||||||||++|||||+++|+||||||||
T Consensus 90 ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt 161 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPT 161 (238)
T ss_dssp SBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred ccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999999887764 3455666778999999999998888755 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1053 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1053 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||+.++..++++|++++++|+|||++||+++ ++...|||+++|++ |++++.|++
T Consensus 162 ~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 162 SGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999989999999999987 68889999999984 899999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.5e-43 Score=385.79 Aligned_cols=214 Identities=21% Similarity=0.350 Sum_probs=181.3
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
-++.+|++.+ ++++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|++.
T Consensus 6 ~Lev~~l~k~-------------yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVY-------------YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEE-------------ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeEEEE-------------ECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEeccccc
Confidence 4566666543 3567899999999999999999999999999999999998764 489999999986
Q ss_pred Chh---hh-cceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCC
Q 037155 952 KQE---TF-ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV-ELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 952 ~~~---~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 1026 (1403)
... .. +..++|+||+..++|.+||+||+.+.+..+... +..++.++++++.+ +|.+..++.++ .||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQLGG-----TLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSC
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCH----HHHHHHHHHHHHHhhChHHHHhCchh-----hCC
Confidence 432 12 234899999999999999999998876544321 23334466777776 67788887654 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|++ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999988999999999986 68899999999985 89999
Q ss_pred ecCCC
Q 037155 1107 AGPLG 1111 (1403)
Q Consensus 1107 ~g~~~ 1111 (1403)
.|+..
T Consensus 220 ~g~~~ 224 (240)
T d1ji0a_ 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 99864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-42 Score=381.08 Aligned_cols=209 Identities=24% Similarity=0.402 Sum_probs=172.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|||+.|++||.++|+||||||||||+++|+|+++| .+|+|.+||+++.....
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~g~~i~~~~~~ 73 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---------------------ENGQVLIDGHDLALADPN 73 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEETTTSCHH
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC---------------------CCCEEEECCEEecccchh
Confidence 45799999999999999999999999999999999999865 58999999999887654
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+|+ .||+|||.|+... .+.+...+++...+. .+
T Consensus 74 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~-------------------------~~~~~~~~~~~~~~~-----~~-- 120 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLN-RSIIDNISLANPG-------------------------MSVEKVIYAAKLAGA-----HD-- 120 (241)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHCTTSTT-------------------------CCHHHHHHHHHHHTC-----HH--
T ss_pred hhhceEEEEecccccCC-ccccccccccCcc-------------------------ccHHHHHHHHHHHhh-----HH--
Confidence 578999999998885 5999999885321 111222222221111 01
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
....++...+|.+|+ .+..|||||||||+|||||+.+|+||+||||||+||+.++.+|.+.|+++.+ ++|+|++.|
T Consensus 121 -~i~~~~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH 196 (241)
T d2pmka1 121 -FISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAH 196 (241)
T ss_dssp -HHTTSTTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECS
T ss_pred -HHHhhhcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEEC
Confidence 123477889999985 5678999999999999999999999999999999999999999999999864 789988877
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++. ..+.||+|++|++|+|+++|++++++.
T Consensus 197 ~l~--~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 197 RLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp SGG--GGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 663 557899999999999999999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-42 Score=378.52 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=174.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
...+|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....+
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p---------------------~sG~I~~~g~~i~~~~~~ 75 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---------------------TEGEVYIDNIKTNDLDDD 75 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHH
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC---------------------CcceeEECCEEcCcCChh
Confidence 45689999999999999999999999999999999999865 589999999998776532
Q ss_pred -------ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 263 -------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 263 -------~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
+.+|||+|++.++|.+||+||+.|+...+..+. .+.++ ....
T Consensus 76 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--------------------~~~~~-----------~~~~ 124 (230)
T d1l2ta_ 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA--------------------MSGEE-----------RRKR 124 (230)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSC--------------------CCHHH-----------HHHH
T ss_pred hcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCC--------------------CCHHH-----------HHHH
Confidence 469999999999999999999999866543211 00111 1123
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+...++.+||++ .+|..+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+
T Consensus 125 ~~~~l~~~~L~~~~~~~~p~~-----LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~ti 199 (230)
T d1l2ta_ 125 ALECLKMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199 (230)
T ss_dssp HHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHhhchhhhhhcCChhh-----CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEE
Confidence 456789999986 47877765 999999999999999999999999999999999999999999999988788999
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecCh
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPR 446 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~ 446 (1403)
|++.|.+ .+ .++||+|++|++|+|+++|+.
T Consensus 200 i~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 200 VVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp EEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred EEECCCH-HH-HHhCCEEEEEECCEEEEeccC
Confidence 9988764 34 489999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-42 Score=384.91 Aligned_cols=205 Identities=21% Similarity=0.291 Sum_probs=179.1
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----------------hhhcc
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----------------ETFAR 958 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~ 958 (1403)
+++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.. ...++
T Consensus 12 yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~ 89 (258)
T d1b0ua_ 12 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89 (258)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred ECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEeccCCccchhcccccHhHHHHHhc
Confidence 3557899999999999999999999999999999999998764 48999999987632 12456
Q ss_pred eeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHH
Q 037155 959 VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAV 1037 (1403)
Q Consensus 959 ~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~ 1037 (1403)
.+|||+|++.++|.+||+||+.+...... ..+.++.++++.++++.++|.+. .++.+ ..|||||||||+|||
T Consensus 90 ~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAr 162 (258)
T d1b0ua_ 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIAR 162 (258)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHH
T ss_pred ceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccCc-----ccccHHHHHHHHHHH
Confidence 79999999999999999999998743222 34566777889999999999764 35443 479999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1038 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1038 aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.+|+||||||||+|||+.++..|++.|++++++|+|||++|||++ ++...|||+++|.+ |++++.|+.
T Consensus 163 aL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999989999999999987 67889999999985 899999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-42 Score=386.73 Aligned_cols=208 Identities=25% Similarity=0.279 Sum_probs=180.7
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h-hcceeeEeecCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T-FARVSGYCEQTDIHS 970 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~ 970 (1403)
+++.++|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... . .++.++|+||++.++
T Consensus 14 yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~ 91 (254)
T d1g6ha_ 14 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91 (254)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred ECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEeccchhHHHHHHhcCCccCCccccC
Confidence 4567899999999999999999999999999999999998764 489999999986432 2 234599999999999
Q ss_pred CCCCHHHHHHHHHhhhC----------CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh
Q 037155 971 PHVTLYESLLYSAWLRL----------SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV 1040 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~ 1040 (1403)
+.+||+||+.++...+. ......++..+.+.++++.+++.+..|+.++ .|||||||||+|||||+
T Consensus 92 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~ 166 (254)
T d1g6ha_ 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALM 166 (254)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHH
T ss_pred CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh-----hCCcHHHHHHHHHHHHH
Confidence 99999999998753321 1122334555678899999999998888765 79999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|.+ |++++.|+..
T Consensus 167 ~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 235 (254)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred hCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHH
Confidence 999999999999999999999999999999988999999999998 68899999999985 8999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-42 Score=381.99 Aligned_cols=213 Identities=22% Similarity=0.377 Sum_probs=174.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
+++.+|+|||+.|++||+++|+||||||||||+++|+|+++| .+|+|.+||+++.....
T Consensus 25 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p---------------------~~G~I~i~g~~i~~~~~ 83 (251)
T d1jj7a_ 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP---------------------TGGQLLLDGKPLPQYEH 83 (251)
T ss_dssp TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEGGGBCH
T ss_pred CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC---------------------CcCEEEECCEecchhhh
Confidence 456799999999999999999999999999999999999865 58999999999877654
Q ss_pred ---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 262 ---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 262 ---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
++.++||+|++.+|+ .||+||+.|+..... ......++....+ ..
T Consensus 84 ~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~------------------------~~~~~~~~~~~~~------~~- 131 (251)
T d1jj7a_ 84 RYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP------------------------TMEEITAAAVKSG------AH- 131 (251)
T ss_dssp HHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC------------------------CHHHHHHHHHHHT------CH-
T ss_pred HHHHHHhhhccccccccC-cchhhhhhhhhcccc------------------------hHHHHHHHHHHHH------HH-
Confidence 478999999999886 599999998633211 0111111111000 01
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
-...+|++..+|.+++ .+..|||||||||+|||||+.+|+|++||||||+||+.++.+|.+.|+++.+..++|+|++.
T Consensus 132 -~~i~~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~it 209 (251)
T d1jj7a_ 132 -SFISGLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209 (251)
T ss_dssp -HHHHTSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEEC
T ss_pred -HHHHhccccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEe
Confidence 1233578889999984 56789999999999999999999999999999999999999999999998776688998887
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|+. +..+.||+|++|++|+|+++|+++++++
T Consensus 210 H~l--~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 210 QHL--SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp SCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 765 3567899999999999999999999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.3e-42 Score=375.95 Aligned_cols=199 Identities=23% Similarity=0.360 Sum_probs=174.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cceEEE
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QRTCAY 267 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~y 267 (1403)
|||+.++ ||+++|+|||||||||||++|+|.++| .+|+|.+||.++....+ +|.+||
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p---------------------~~G~I~~~G~~i~~~~~~~r~ig~ 74 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP---------------------DRGEVRLNGADITPLPPERRGIGF 74 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCTTTSCCBC
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC---------------------CceEEEECCEECCcCCHHHcCcee
Confidence 8999995 689999999999999999999999865 58999999999877655 478999
Q ss_pred eccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc
Q 037155 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 347 (1403)
|+|++.++|.+||+||+.|+.+... +.+ .+.+++++++.+||++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~------------~~~------------------------~~~~v~~~l~~~gl~~ 118 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVE------------RVE------------------------RDRRVREMAEKLGIAH 118 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSC------------HHH------------------------HHHHHHHHHHTTTCTT
T ss_pred eccchhhcccchhhHhhhhhhcccC------------HHH------------------------HHHHHHHHHHhcCcHh
Confidence 9999999999999999999753210 111 1224677899999999
Q ss_pred cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 037155 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYD 427 (1403)
Q Consensus 348 ~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 427 (1403)
..|..+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.++++.+..+.|+|++.|+ ..++.+
T Consensus 119 ~~~~~~~~-----LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~ 192 (240)
T d2onka1 119 LLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAM 192 (240)
T ss_dssp TTTCCGGG-----SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHH
T ss_pred hhhCChhh-----CCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHH
Confidence 99988866 999999999999999999999999999999999999999999999988778888877654 558999
Q ss_pred hcCEEEEEcCCeEEEecChhhHHH
Q 037155 428 LFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 428 ~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+||+|++|++|++++.|+++++.+
T Consensus 193 ~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 193 LADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCEEEEEECCEEEEEecHHHHhc
Confidence 999999999999999999999863
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7.3e-42 Score=379.97 Aligned_cols=209 Identities=24% Similarity=0.418 Sum_probs=173.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|||+.|++||.++|+||||||||||+++|+|+++| .+|+|.++|+++.+...
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---------------------TSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---------------------SEEEEEETTEEGGGSCHH
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc---------------------cccccccCCEEcccCCHH
Confidence 35799999999999999999999999999999999999865 58999999998877653
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+|+ .||+|||.|+... ...++..+++...+. .+.
T Consensus 89 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~-------------------------~~~~~~~~al~~~~l-----~~~- 136 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFS-DTVKENILLGRPT-------------------------ATDEEVVEAAKMANA-----HDF- 136 (255)
T ss_dssp HHHHTEEEECSSCCCCS-SBHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC-----HHH-
T ss_pred HhhheeeeeeccccCCC-CCHHHHHhccCcC-------------------------CCHHHHHHHHHHhCC-----HHH-
Confidence 578999999998885 5999999886211 111222233322221 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
...|++..||.+|+ .+..|||||||||+|||||+.+|+||+||||||+||+.++..|.+.|+++.+ ++|+|++.|
T Consensus 137 --i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH 211 (255)
T d2hyda1 137 --IMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAH 211 (255)
T ss_dssp --HHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECS
T ss_pred --HHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeC
Confidence 23588899999985 5677999999999999999999999999999999999999999999998764 789888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++. ....||+|++|++|+|++.|+++++++
T Consensus 212 ~~~--~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 212 RLS--TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp SGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 653 567899999999999999999999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.5e-42 Score=373.65 Aligned_cols=193 Identities=25% Similarity=0.411 Sum_probs=172.5
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
||||++. +|+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...+|.+|||+|++.++|++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 689999999999999999999998764 48999999998754 2345779999999999999999999998
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~ 1061 (1403)
+.+ .....+++++++++++.+||.+..++.+. .|||||||||+|||||+.+|+||+|||||+|||+.++.
T Consensus 94 ~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChh-----hCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 642 34456777889999999999999988754 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1062 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1062 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
.+++.|+++.++ |.|||++||+++ ++.+.||++++|.+ |++++.|+.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999755 999999999987 68899999999985 899999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=6.7e-42 Score=378.62 Aligned_cols=209 Identities=25% Similarity=0.351 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++||+++|+||||||||||+++|+|.++| .+|+|.+||+++++...
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~g~~i~~~~~~~ 73 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---------------------TAGEITIDGQPIDNISLEN 73 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---------------------SBSCEEETTEESTTTSCSC
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC---------------------CCCEEEECCEEeccccHHH
Confidence 4699999999999999999999999999999999999865 58999999999876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+. ||+||+.++...... .+...++....... -
T Consensus 74 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~------------------------~~~~~~~~~~~~~~--------~ 120 (242)
T d1mv5a_ 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYT------------------------DEDLWQVLDLAFAR--------S 120 (242)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSC------------------------HHHHHHHHHHHTCT--------T
T ss_pred HHhheEEEccccccCCc-chhhheecccccccc------------------------hhhHHHHHHHHHhh--------h
Confidence 5789999999998876 999999875332110 01111111111000 0
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
....+++..+|.+|+ .+..|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++.+ ++|+|++.|+
T Consensus 121 ~~~~~~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~ 197 (242)
T d1mv5a_ 121 FVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR 197 (242)
T ss_dssp TTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCS
T ss_pred hhccCcccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 123467788999985 5667999999999999999999999999999999999999999999999864 7899888776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+ +....||+|++|++|+|+++|+++++++
T Consensus 198 l--~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 198 L--STIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp H--HHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred H--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 3556799999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.4e-41 Score=372.60 Aligned_cols=210 Identities=23% Similarity=0.394 Sum_probs=171.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+.++|+|||+.|++||+++|+||||||||||+++|+|+++| .+|+|.+||.++.+...
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---------------------DEGHILMDGHDLREYTLA 85 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---------------------SEEEEEETTEETTTBCHH
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC---------------------CccEEEECCcccchhhhh
Confidence 35799999999999999999999999999999999999865 58999999999887653
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.++.. |+++|+.++.... .+.++..+++...+. .+.
T Consensus 86 ~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~~~------------------------~~~~~i~~a~~~~~l-----~~~- 134 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFND-TVANNIAYARTEE------------------------YSREQIEEAARMAYA-----MDF- 134 (253)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTTSC------------------------CCHHHHHHHHHTTTC-----HHH-
T ss_pred hhhheEEEEeeccccCCc-chhhhhhhcCccc------------------------CCHHHHHHHHHHHhH-----HHH-
Confidence 4679999999988864 9999998862110 011122222222211 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++ .|++..||.+|+ .+..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|++.|
T Consensus 135 i~--~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH 209 (253)
T d3b60a1 135 IN--KMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAH 209 (253)
T ss_dssp HH--HSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECS
T ss_pred HH--hccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEEC
Confidence 12 267788999985 5678999999999999999999999999999999999999999999999864 789888776
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.. +..+.||+|++|++|+|+++|+++++++
T Consensus 210 ~l--~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 210 RL--STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp CG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 65 3557899999999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.1e-41 Score=369.07 Aligned_cols=208 Identities=25% Similarity=0.317 Sum_probs=180.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
++++|+|||+.|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.+..
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p---------------------~~G~i~i~G~~i~~~~~~ 72 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---------------------SSGIVTVFGKNVVEEPHE 72 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEETTTCHHH
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCEEEECcEecccChHH
Confidence 46799999999999999999999999999999999999865 5899999999876532
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++++||+||+.|.+.+.+... .+ ....++.++
T Consensus 73 ~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l 118 (238)
T d1vpla_ 73 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS--------------------SE--------------IEEMVERAT 118 (238)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH--------------------HH--------------HHHHHHHHH
T ss_pred HHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCH--------------------HH--------------HHHHHHHHH
Confidence 24779999999999999999999999765443210 01 112356678
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+.++|.+..+..+++ |||||||||+|||||+++|++|+|||||+|||+.++.+|.+.++++++ .|+|++++.|
T Consensus 119 ~~~~l~~~~~~~~~~-----lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH- 191 (238)
T d1vpla_ 119 EIAGLGEKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSH- 191 (238)
T ss_dssp HHHCCGGGGGSBGGG-----CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEEC-
T ss_pred HhCCCHHHHhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-
Confidence 999999999988876 999999999999999999999999999999999999999999999876 4888888765
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEF 452 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~~ 452 (1403)
...++..+||+|++|++|++++.|+++++.+.
T Consensus 192 ~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 192 NMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 45589999999999999999999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7e-41 Score=369.95 Aligned_cols=205 Identities=24% Similarity=0.358 Sum_probs=173.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
++++|+||||.|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.....
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p---------------------~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---------------------QKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHH
T ss_pred CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CccEEEecccccccccHH
Confidence 35799999999999999999999999999999999999865 58999999999876543
Q ss_pred ---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 262 ---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 262 ---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
+..++|++|+..+|+.+||+||+.+++....... .. ....+.
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~---------------------~~--------------~~~~~~ 121 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---------------------GI--------------KRDLEW 121 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS---------------------HH--------------HHHHHH
T ss_pred HHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHH---------------------HH--------------HHHHHH
Confidence 2349999999999999999999988754332110 00 112234
Q ss_pred HHHHc-CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 339 VLKLL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 339 il~~l-gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
+++.+ +|++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.+|++.++++++. |.|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~-----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~ 195 (240)
T d1ji0a_ 122 IFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLV 195 (240)
T ss_dssp HHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHhhChHHHHhCchhh-----CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 45555 678888888876 9999999999999999999999999999999999999999999999764 7888776
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
. |...++.++||+|++|++|++++.|+++++.
T Consensus 196 t-H~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 196 E-QNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp E-SCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred e-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 5 4556899999999999999999999999885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-40 Score=366.44 Aligned_cols=211 Identities=26% Similarity=0.421 Sum_probs=172.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
+++|+|++|.++ .+++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CeEEEEEEEEeC-----------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEe
Confidence 368899988763 2346799999999999999999999999999999999998764 489999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-------KPLRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.++ ..||+||+.+.. .....++ ++++++..++ ....++.++..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred cccchhhhhceEEEEecccccC-CccccccccccC-----ccccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCC-
Confidence 43 45678899999999876 469999998752 1222222 3333333333 33445666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ..+.||+|++|+ +
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEE-C
Confidence 357999999999999999999999999999999999999999999999865 899999999986 347899999998 5
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-40 Score=369.69 Aligned_cols=206 Identities=23% Similarity=0.311 Sum_probs=173.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-- 260 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-- 260 (1403)
+.++|+||||+|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++....
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p---------------------~~G~I~~~G~~i~~~~~~ 72 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---------------------SEGAIIVNGQNINLVRDK 72 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCEEECT
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC---------------------CCCCEEECCEEeccCCcc
Confidence 35699999999999999999999999999999999999865 5899999999875432
Q ss_pred --------------ccceEEEeccCCCCCCCCCHHHHHHhhcc-cccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHH
Q 037155 261 --------------PQRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAV 325 (1403)
Q Consensus 261 --------------~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~ 325 (1403)
.++.+|||+|++.+++.+||+||+.|+.. ..+. ++ .+
T Consensus 73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~----------~~----------~~-------- 124 (258)
T d1b0ua_ 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SK----------HD-------- 124 (258)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CH----------HH--------
T ss_pred chhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCC----------CH----------HH--------
Confidence 13679999999999999999999998632 1111 00 01
Q ss_pred HhhccchhHHHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH
Q 037155 326 AVAGQETSLVTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK 404 (1403)
Q Consensus 326 ~~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~ 404 (1403)
...++..+++.+||.+. .+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.+|.+.|+
T Consensus 125 ------~~~~~~~~l~~~~l~~~~~~~~p~~-----LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~ 193 (258)
T d1b0ua_ 125 ------ARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 193 (258)
T ss_dssp ------HHHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCchhhhccCccc-----ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhh
Confidence 11235668899999774 4666655 99999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 405 QMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 405 ~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++.+ .|.|+|++ .|...++..+||||++|++|+|++.|+++++.
T Consensus 194 ~l~~-~g~til~v-tHdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 194 QLAE-EGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHHH-TTCCEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hhcc-cCCceEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9976 47777765 46667899999999999999999999999985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-40 Score=371.26 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=181.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
+.++|+|||+++++||+++|+||||||||||+++|+|.++| .+|+|.++|+++....++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p---------------------~~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---------------------DEGRVYFENKDITNKEPA 74 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHH
T ss_pred CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC---------------------CCcEEEECCEeccchhHH
Confidence 45799999999999999999999999999999999999865 589999999998776543
Q ss_pred ----ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 263 ----RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 263 ----~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
+.++|++|++.+++++||+||+.++...++....... -.......+.+ ....++.
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~-------~~~~~~~~~~~--------------~~~~~~~ 133 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSL-------FYKKWIPKEEE--------------MVEKAFK 133 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHH-------HHCSSCCCCHH--------------HHHHHHH
T ss_pred HHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhh-------hhhcccccHHH--------------HHHHHHH
Confidence 3599999999999999999999998655432211000 00011111111 1124566
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+++++..|+.+++ |||||||||+|||||+.+|++|+|||||+|||+.++.+|.+.+++++. .|.|++++.
T Consensus 134 ~l~~~~l~~~~~~~~~~-----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vs 207 (254)
T d1g6ha_ 134 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIE 207 (254)
T ss_dssp HHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHhcCcchhccCchhh-----CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 88999999999999887 999999999999999999999999999999999999999999999965 577877765
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|..+++.++||+|++|++|++++.|+++|+.+
T Consensus 208 -Hdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 208 -HRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp -SCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred -CcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 55669999999999999999999999988653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.1e-41 Score=369.87 Aligned_cols=210 Identities=27% Similarity=0.439 Sum_probs=171.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|++|+++ +.+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEec
Confidence 56788887652 234699999999999999999999999999999999998764 4799999999875
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-------CcccccccCCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-------PLRDALVGLPGV 1022 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~ 1022 (1403)
. ..+++.+|||+|++.+++. ||+||+.+... .....+. +++.++..++. +..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchhh----HHHHHHHHHhhhhhccCcccccccccCCC-
Confidence 4 4467789999999988876 99999976532 1122222 34444544443 34455666543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||++||+++ ....||++++|+ +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEE-CC
Confidence 4699999999999999999999999999999999999999999999997 4899999999975 446799999998 58
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
Confidence 99999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-40 Score=365.94 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=172.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++|+++. ..++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEec
Confidence 4899999887632 1235699999999999999999999999999999999998764 489999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHH-----HHHHHHHHcCCCCcccccccCCCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKI-----FVDEVMELVELKPLRDALVGLPGVN 1023 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~~~ 1023 (1403)
.. ..+++.++||+|++.+++ .||+||+.++... ........+ ...+.++ +|.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-Cc
Confidence 43 456788999999998875 6999999986321 111111111 1122222 3444456666643 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
.|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.++ |+|||++||+++ ..+.||+|++|+ +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998654 899999999975 457899999998 58
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.3e-39 Score=361.67 Aligned_cols=211 Identities=24% Similarity=0.365 Sum_probs=175.0
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++|+++. ....+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 16 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCCEEc
Confidence 5899999887531 235699999999999999999999999999999999998764 489999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
.. ..+++.++||+|++.+++ .||+||+.|+. .....+ .+.++++..++.+ -.|+.++..
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER- 151 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred ccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC-
Confidence 43 457788999999988764 69999998762 122222 2556677666643 345566643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ....||++++|+ +
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~-~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE-N 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE-T
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 346999999999999999999999999999999999999999999999864 899999999986 347899999998 5
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 228 G~iv~~G~~ 236 (255)
T d2hyda1 228 GHIVETGTH 236 (255)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-39 Score=359.13 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=173.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++|.++. .+..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCccc
Confidence 5899999886531 235699999999999999999999999999999999998764 489999999986
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
.. ..+++.++||+|++.++ ..|+++|+.++. +...+.+ .++++++..++.+ -.++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred chhhhhhhhheEEEEeeccccC-CcchhhhhhhcC----cccCCHH----HHHHHHHHHhHHHHHHhccccchhhhcCC-
Confidence 43 45677899999998776 469999998752 1122222 2445555555433 245566643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ..+.||+|++|+ +
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~-~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE-D 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-T
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEE-C
Confidence 457999999999999999999999999999999999999999999999864 899999999986 347899999998 4
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.2e-38 Score=354.24 Aligned_cols=199 Identities=21% Similarity=0.293 Sum_probs=160.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
..+||+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p---------------------~~G~I~~~g--------- 97 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---------------------SEGIIKHSG--------- 97 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---------------------SEEEEECCS---------
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC---------------------CCcEEEECC---------
Confidence 35799999999999999999999999999999999999865 589999998
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++||+|++.+++. ||+||+.|+..... . ......+.+ +.....
T Consensus 98 -~i~~v~Q~~~l~~~-tv~eni~~~~~~~~--~---------------------~~~~~~~~~-----------~~~~~i 141 (281)
T d1r0wa_ 98 -RVSFCSQFSWIMPG-TIKENIIFGVSYDE--Y---------------------RYKSVVKAC-----------QLQQDI 141 (281)
T ss_dssp -CEEEECSSCCCCSE-EHHHHHTTTSCCCH--H---------------------HHHHHHHHT-----------TCHHHH
T ss_pred -EEEEEeccccccCc-eeeccccccccccc--h---------------------HHHHHHHHH-----------HhHHHH
Confidence 48999999998875 99999998643210 0 011111111 111234
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
..+++..++.+|+ .+..|||||||||+|||||+.+|+||+|||||++||+.+..+|++.+..... .++|+|++.|+.
T Consensus 142 ~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~- 218 (281)
T d1r0wa_ 142 TKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM- 218 (281)
T ss_dssp TTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH-
T ss_pred Hhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechH-
Confidence 5678888999984 5567999999999999999999999999999999999999999876433222 478888877654
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+..+.||+|++|++|+|+++|+++|+..
T Consensus 219 -~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 219 -EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp -HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 5668899999999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-37 Score=343.50 Aligned_cols=195 Identities=23% Similarity=0.368 Sum_probs=167.9
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|++... ...+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccH
Confidence 36999999999999999999999999999999999653 36999999987643 2344568999998877677899
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEE
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFM 1048 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~-------~P~illL 1048 (1403)
++++.+...- +.+.+.++++++.+++.+..++.+. .|||||||||+||++|++ +|+||+|
T Consensus 90 ~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEE
Confidence 9998765321 1223457889999999988887644 799999999999999997 7799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|+ +|++++.|+..
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999989999999999987 6889999999998 58999999853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-36 Score=341.33 Aligned_cols=188 Identities=21% Similarity=0.359 Sum_probs=152.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
.+++|+||||+|++||++||+||||||||||+++|+|...+ .+|.|.++|+ ++||+|++.+++. ||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCSE-EHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECCE----------EEEEeccccccCc-eee
Confidence 35799999999999999999999999999999999998764 4899999983 8999999988764 999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHH-------cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMEL-------VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
||+.|+.. ..... .+++++. ..+.+..++.++.. ...|||||||||+|||||+++|+||+||
T Consensus 115 eni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred cccccccc------ccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence 99987531 11111 2233333 33444556666643 3469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||++||+.+...+++.+......|+|+|++||+++ ..+.||+|++|++ |++++.|+..
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHH
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999998764444456899999999974 5678999999985 8999999863
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-36 Score=327.63 Aligned_cols=198 Identities=25% Similarity=0.367 Sum_probs=167.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc--
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ-- 262 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~-- 262 (1403)
..|+|||+.|++||+++|+||||||||||+++|+|..+ .+|+|.++|+++.....+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----------------------~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----------------------GKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC----------------------CSSEEEESSSBGGGSCHHHH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----------------------CceEEEECCEECCcCCHHHH
Confidence 36999999999999999999999999999999999652 479999999987665432
Q ss_pred -ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 263 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 263 -~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
...+|++|+.......|+.+++.+...-+ ......+.+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~ 111 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDK---------------------------------------TRTELLNDVAG 111 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCSCT---------------------------------------TCHHHHHHHHH
T ss_pred HhhceeeeccccCCccccHHHHhhhccchh---------------------------------------hHHHHHHHHHH
Confidence 45899999877666779999987642210 01123456788
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG-------AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~-------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.++|++..+..+++ |||||||||+||+||+. +|++|+|||||+|||+.++..+.+.++++++ .|.|+
T Consensus 112 ~~~l~~~~~~~~~~-----LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~ti 185 (231)
T d1l7vc_ 112 ALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAI 185 (231)
T ss_dssp HTTCTTTTTSBGGG-----CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred hcCCHhHhCcChhh-----cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 89999988888765 99999999999999996 6799999999999999999999999999976 58888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.| ...++.+++|+|++|++|++++.|+++++.
T Consensus 186 i~vtH-dl~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 186 VMSSH-DLNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp EECCC-CHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred EEEeC-CHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 77765 456899999999999999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3e-35 Score=316.79 Aligned_cols=183 Identities=19% Similarity=0.288 Sum_probs=151.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
+++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.+... .+..++|++|+..+.+.+|+.|
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc--CCCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHH
Confidence 4699999999999999999999999999999999998764 48999999998753 4567999999999989999999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
++.+.+.++... ... ..+.+.++.+++.+..+. + ..||||||||++|||+|+.+|+++||||||+|||+
T Consensus 90 ~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~-~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~ 158 (200)
T d1sgwa_ 90 YLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK-L-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 158 (200)
T ss_dssp HHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB-G-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred HHHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc-c-----CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCH
Confidence 999887765432 222 235677888888665432 3 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1058 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
.++..+++.|+++.++ |.+||++.|+. +.||.+.+|.+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 159 DSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp TTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 9999999999998765 44455544543 46899888764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-34 Score=306.25 Aligned_cols=184 Identities=17% Similarity=0.275 Sum_probs=149.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
++||+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+ .+.
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p---------------------~~G~I~~~g~~i~~--~~~ 70 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---------------------LKGEIIYNGVPITK--VKG 70 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEGGG--GGG
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc---------------------CCCEEEECCEehhH--hcC
Confidence 3699999999999999999999999999999999999865 58999999998765 356
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|+..++..+|++|++.+.+...+... + .+ .+...++.+
T Consensus 71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-------------------~--~~---------------~~~~~l~~~ 114 (200)
T d1sgwa_ 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-------------------N--KN---------------EIMDALESV 114 (200)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCC-------------------C--HH---------------HHHHHHHHT
T ss_pred cEEEEeecccCCCCcCHHHHHHHHHHhcCCcc-------------------C--HH---------------HHHHHHHHc
Confidence 79999999999999999999988755443211 0 01 122345666
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
++.+. +..+++ |||||||||+||+||+.+|++++|||||+|||+.++.++++.|+++.+.. +++|++.||.
T Consensus 115 ~~~~~-~~~~~~-----LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~-~~~ii~~~~~-- 185 (200)
T d1sgwa_ 115 EVLDL-KKKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSREE-- 185 (200)
T ss_dssp TCCCT-TSBGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESSC--
T ss_pred CCccc-ccccCc-----CCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCC-CEEEEEEech--
Confidence 66543 345654 99999999999999999999999999999999999999999999988764 4555555543
Q ss_pred hHHhhcCEEEEEcC
Q 037155 424 ETYDLFDDIILISE 437 (1403)
Q Consensus 424 ~~~~~fD~IilL~~ 437 (1403)
.++||.+.+|++
T Consensus 186 --l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 186 --LSYCDVNENLHK 197 (200)
T ss_dssp --CTTSSEEEEGGG
T ss_pred --hhhcchhhheee
Confidence 357999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=9.4e-14 Score=144.84 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=63.3
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeE
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQI 440 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~i 440 (1403)
+|+|+++|.++++++..+|+++++|||.. +......+.+.+.+..+..+.+++++.|+. +....+|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEE
Confidence 79999999999999999999999999843 333445666677666555567777776654 45678899999999999
Q ss_pred EEecC
Q 037155 441 VYHGP 445 (1403)
Q Consensus 441 v~~G~ 445 (1403)
+.-++
T Consensus 158 ~~v~~ 162 (178)
T d1ye8a1 158 IELTP 162 (178)
T ss_dssp EECCT
T ss_pred EEECC
Confidence 87653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.26 E-value=3.9e-13 Score=140.06 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=94.8
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~ 992 (1403)
.++|+||||||||||+++|+|.... ..|.+.+.+.+..... +..++..+......... ............
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETK--KRTGFRIITTEGKKKIF------SSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEE------EETTCCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHH--HhhhhhhhhhhHHHHHH------hhhhhhhhhhhh
Confidence 4899999999999999999996543 3678887765432211 11222111100000000 000000000000
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-
Q 037155 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1071 (1403)
Q Consensus 993 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~- 1071 (1403)
..+. + .....+|+|+++|.++++++..+|++|++|||+...+ ......+.+.++.
T Consensus 72 -------------~~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 -------------SYGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TEEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred -------------hhhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhc
Confidence 0000 0 0011378999999999999999999999999854433 3344555666654
Q ss_pred hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1072 ~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+.++|||+++|+.+ ....+|++..+. +|+++.-++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 44899999999965 456778888876 5788776653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=8e-08 Score=108.15 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1022 VNGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL----~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
...+|+|||+...++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 346999999998877664 446789999999999999999999999999875 678999999985 5688998866
Q ss_pred E
Q 037155 1098 M 1098 (1403)
Q Consensus 1098 l 1098 (1403)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=3.1e-07 Score=103.23 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=61.6
Q ss_pred CCCChhHhhHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEE
Q 037155 359 RGISGGQKKRVTTGEML----VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL 434 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL----~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~Iil 434 (1403)
..+|+|||+...++..+ ..+++++++|||-++||+.....+.+.|++.++ +.-+|+++|. +++.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHs--p~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHN--KIVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCC--TTGGGGCSEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECC--HHHHHhcccEEE
Confidence 45899999998876543 467799999999999999999999999998864 4566676654 478899999965
Q ss_pred --EcCC
Q 037155 435 --ISEG 438 (1403)
Q Consensus 435 --L~~G 438 (1403)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 5666
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=2.6e-07 Score=108.44 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1024 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL----~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
.+|||||.++++|..+ ..++++++||||+++||+.....+.+.|++++..+.-+|+|||+| ++.+.+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 5899999998877544 457789999999999999999999999999866566799999997 478889998755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=8.2e-06 Score=95.19 Aligned_cols=74 Identities=19% Similarity=0.388 Sum_probs=58.9
Q ss_pred CCCChhHhhHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEE
Q 037155 359 RGISGGQKKRVTTGEML----VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL 434 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL----~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~Iil 434 (1403)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. .+.-+|+++|+| ++.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEEE
Confidence 44799999998887443 467889999999999999999999999988753 234466666544 69999999875
Q ss_pred E
Q 037155 435 I 435 (1403)
Q Consensus 435 L 435 (1403)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.37 E-value=0.0007 Score=71.55 Aligned_cols=57 Identities=9% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i-~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
|-+|+.-....+.+..++++||+.+|=|+.....+ ...++.+.+.+..++++||..+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 33444444444566789999999999999766554 4455556777899999999853
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.05 E-value=0.00089 Score=70.74 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=35.5
Q ss_pred hHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecC
Q 037155 367 KRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKF-LKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 367 qRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~-L~~l~~~~~~tvii~~~q~ 421 (1403)
+|++-....+++..++++||+.+|=|+.....+... ++.+.+ .+..+++++|++
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~ 157 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeech
Confidence 333333333456679999999999999887776543 344444 466777777654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00057 Score=72.81 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=33.6
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecC
Q 037155 376 VGAAKVLLMDEISTGLDSSTTFQICKF-LKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 376 ~~~p~illLDEptsgLDs~t~~~i~~~-L~~l~~~~~~tvii~~~q~ 421 (1403)
.++..++++||+.+|=|+.....+... ++.+....+..++++.|.+
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 445679999999999999999888654 5566554455666665544
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00085 Score=71.43 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCc
Q 037155 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPS 1085 (1403)
Q Consensus 1029 qrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~-~~l~~~~~~-g~tvi~~~H~~~ 1085 (1403)
|-+|+.-...-+.+.+++++||+.+|=|+.....+. ..++.+... +..++++||...
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 333333333345566799999999999998776665 456667554 568999999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.73 E-value=0.0016 Score=70.92 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.4
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
|+++.+=+.||+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 333333379999999999999999999887764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.56 E-value=0.016 Score=62.59 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
+.+-|+++.+=+.||+++.|.|+||+|||||+.-|+-
T Consensus 21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3455666666689999999999999999999988874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.45 E-value=0.016 Score=60.93 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=39.8
Q ss_pred cCCcEeEEeCCCCC---CCHHHHHHHHHHHHHHHHhCCcEEEEEEecC---------chhHHhhcCEEEEEc
Q 037155 377 GAAKVLLMDEISTG---LDSSTTFQICKFLKQMVHIMDVTMIVALLQP---------APETYDLFDDIILIS 436 (1403)
Q Consensus 377 ~~p~illLDEptsg---LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~---------~~~~~~~fD~IilL~ 436 (1403)
.+|++++.|..+.- .+..........|.++++..+.+++++.|.+ .......+|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 47889998876543 3555555566666667777788887766543 123456789998874
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.27 E-value=0.00089 Score=67.10 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.|++++|.|||||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.018 Score=61.85 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=32.5
Q ss_pred HhcCCcEeEEeCCCC---C--CCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 375 LVGAAKVLLMDEIST---G--LDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 375 L~~~p~illLDEpts---g--LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
-..+++++++|--++ + -|.....++++.|+.+++..+.++++. ||+
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v-~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehh-hhc
Confidence 346899999996543 1 255566778888888888777777665 444
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0011 Score=65.85 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.17 E-value=0.00096 Score=67.99 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|++++|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0012 Score=66.00 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+.++.|+|||||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999876
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.00016 Score=74.23 Aligned_cols=35 Identities=31% Similarity=0.235 Sum_probs=29.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-+++.++.+.+| +++|+|||||||||+|.||.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 346777788776 99999999999999999998544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0013 Score=69.00 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+|+.++++|+||+|||||+|+|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 37789999999999999999999865
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.00018 Score=73.89 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
-+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 456778888887 99999999999999999986
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.99 E-value=0.077 Score=54.83 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=27.0
Q ss_pred eeeece-EEEEeCCeEEEEEcCCCCChHHHHHHHh
Q 037155 185 QILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 185 ~iL~~v-s~~i~~Ge~~~llGp~GsGKSTLL~~La 218 (1403)
+-|+++ +|=+++|+++.|.|+||+|||||..-++
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345553 4569999999999999999999986544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0015 Score=68.52 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+|+.++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 47899999999999999999999854
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.91 E-value=0.0017 Score=64.86 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
++++|+|++|||||||++.|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 36789999999999999999988764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.77 E-value=0.0018 Score=65.90 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=22.3
Q ss_pred CeEEEEEccCCCchHHHHHhhcCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
|.++.|+||||||||||++.|..+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.77 E-value=0.0021 Score=64.29 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999997763
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.68 E-value=0.0019 Score=64.98 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.++|.||+|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999765
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.60 E-value=0.0025 Score=63.20 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+++|.|||||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.56 E-value=0.0029 Score=61.78 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG 219 (1403)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0023 Score=63.53 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.002 Score=64.67 Aligned_cols=26 Identities=46% Similarity=0.741 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999998854
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.017 Score=62.17 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHhhCCCEEEEeCCCC---C--CCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 037155 1038 ELVANPSIIFMDEPTS---G--LDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1083 (1403)
Q Consensus 1038 aL~~~P~illLDEPTs---g--LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1083 (1403)
.-..+|+++++|--++ + -|......+++.|+++++ .|+|||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999996542 1 255666778888888764 48999999884
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.51 E-value=0.003 Score=62.98 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|-.++|.|||||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356778999999999999999999765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.39 E-value=0.0031 Score=62.88 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.35 E-value=0.0017 Score=68.30 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+|..++++|+||+|||||+|.|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 47789999999999999999999853
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.28 E-value=0.0038 Score=62.14 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++.|.|||||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56889999999999999999998763
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.26 E-value=0.0016 Score=68.67 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+|+.++++|+||+|||||+|+|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 37788999999999999999999975
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.004 Score=64.73 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.|.++.|+||||||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.19 E-value=0.0036 Score=64.11 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|||||||+|+|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4899999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.19 E-value=0.0038 Score=61.96 Aligned_cols=22 Identities=59% Similarity=0.730 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|.|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999665
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.005 Score=63.26 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|-+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998888643
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0043 Score=61.66 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.00 E-value=0.16 Score=52.28 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=37.3
Q ss_pred hCCCEEEEeCCCCCC----C-HHHHHHHHHHHHHHHhCCCEEEEEecCCcH--------HHHHhcCeEEEEe
Q 037155 1041 ANPSIIFMDEPTSGL----D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELLLMK 1099 (1403)
Q Consensus 1041 ~~P~illLDEPTsgL----D-~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~--------~~~~~~d~i~ll~ 1099 (1403)
.+|+++++|--+.=. + ......+.+.++..++.++|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999765432 2 233334444555555679999999996531 2334678877764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.97 E-value=0.0053 Score=61.60 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++++|.||+||||||+.+.|+-++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999997763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0055 Score=63.64 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999998753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.84 E-value=0.0061 Score=62.26 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.83 E-value=0.0062 Score=62.01 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|-.++|+|||||||||+.+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 456678899999999999999999654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.78 E-value=0.0057 Score=60.94 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.0
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++|.++.|+|++||||||+-+.|+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.78 E-value=0.0048 Score=63.21 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.74 E-value=0.0048 Score=62.49 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+||+|++++|||||+|.|+|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.72 E-value=0.0062 Score=64.20 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998544
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.033 Score=59.48 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+..-+.|.||+|+|||+|.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHH
Confidence 3445779999999999999999963
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.69 E-value=0.0059 Score=62.41 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+||+|++|||||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999854
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.67 E-value=0.016 Score=66.27 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 370 TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 370 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
++..+|=.+|+|++..|.. |..++...++. +. .|..|+.++|..+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~-tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SL-TGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HH-TTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHHHH----Hh-cCCeEEEEeccCc
Confidence 3445666799999999998 88887665543 32 4777777777544
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.65 E-value=0.0058 Score=61.56 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-++|+|++|+|||||+|+|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.64 E-value=0.0068 Score=65.03 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
..++|.||||||||||.++|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999999763
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0045 Score=62.86 Aligned_cols=27 Identities=41% Similarity=0.444 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997763
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.61 E-value=0.0062 Score=60.91 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchHHHHHhhcCCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..++|.||+|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0069 Score=59.13 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36678999999999999999765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.59 E-value=0.0066 Score=60.40 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEEccCCCchHHHHHhhcCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++|+|++|||||||++.|..+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.008 Score=59.99 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.0077 Score=61.63 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-.+++|+|||||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.45 E-value=0.0078 Score=59.76 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.4
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++|-.++|.||+||||||+.+.|+-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.0084 Score=61.63 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.31 E-value=0.0096 Score=59.87 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.4
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
++-+++.++|+|||||||+.+.++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.27 E-value=0.023 Score=60.43 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.3
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.+.||+|+|||+|.++|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 679999999999999999964
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.25 E-value=0.0091 Score=58.02 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEEccCCCchHHHHHhhcC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g 933 (1403)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.22 E-value=0.0092 Score=59.96 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.19 E-value=0.0071 Score=61.20 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.011 Score=58.02 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-++|+|++|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.01 Score=59.96 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.14 E-value=0.009 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.14 E-value=0.0099 Score=60.22 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998665
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.011 Score=60.24 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.09 E-value=0.01 Score=59.91 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.011 Score=60.20 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHhcccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.01 E-value=0.011 Score=57.70 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.97 E-value=0.01 Score=60.29 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.012 Score=58.79 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.011 Score=57.50 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.91 E-value=0.011 Score=58.72 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|++||||||+.++||-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999776
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.90 E-value=0.0085 Score=60.33 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+||+|++|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.013 Score=57.58 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.2
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999999853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.88 E-value=0.0077 Score=66.92 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.++.|.-++|.||.||||||||++|++..++
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence 3456677899999999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.88 E-value=0.012 Score=58.24 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..++.|.|++||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.013 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=0.013 Score=61.41 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
|=+++|+++.|.||||||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999999987764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.81 E-value=0.0096 Score=59.50 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|||||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.79 E-value=0.012 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677889999999999999998874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.77 E-value=0.013 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchHHHHHhhcCCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.014 Score=58.35 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.73 E-value=0.014 Score=58.86 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.011 Score=58.97 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.67 E-value=0.012 Score=59.59 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
++||-|++|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.63 E-value=0.014 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.014 Score=59.48 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.56 E-value=0.014 Score=57.17 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.56 E-value=0.014 Score=59.91 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++++|.||||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.55 E-value=0.047 Score=58.59 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+..-+-|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34447799999999999999999754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.49 E-value=0.014 Score=58.28 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999884
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=0.013 Score=59.44 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.46 E-value=0.014 Score=57.70 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.|+||+||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.43 E-value=0.012 Score=59.23 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+||+|.+|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.016 Score=58.58 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred eEEEEEccCCCchHHHHHhhcCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.39 E-value=0.013 Score=61.55 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.015 Score=58.38 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.0099 Score=59.58 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.34 E-value=0.017 Score=57.58 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|++||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.33 E-value=0.017 Score=58.11 Aligned_cols=22 Identities=68% Similarity=0.998 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.32 E-value=0.016 Score=58.37 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+||+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.31 E-value=0.015 Score=57.64 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|++||||||+-+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999999776
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.30 E-value=0.018 Score=57.78 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.29 E-value=0.017 Score=58.10 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.27 E-value=0.017 Score=56.93 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999998854
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.26 E-value=0.017 Score=58.76 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.015 Score=58.15 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999854
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.012 Score=59.64 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.|.++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.17 E-value=0.018 Score=57.43 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHhhcCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.13 E-value=0.019 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+||+|.+|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.09 E-value=0.019 Score=59.02 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.08 E-value=0.024 Score=59.82 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.9
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHh
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~La 218 (1403)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999987554
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.017 Score=56.09 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+.|+||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.019 Score=59.43 Aligned_cols=24 Identities=46% Similarity=0.638 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.97 E-value=0.025 Score=59.20 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.9
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.|-+++|+++.|.||||+|||||..-++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3559999999999999999999998887543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.023 Score=63.03 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999987654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.91 E-value=0.017 Score=56.16 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.90 E-value=0.0081 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|++|+|||||+++|.|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.89 E-value=0.018 Score=58.60 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.017 Score=59.17 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.80 E-value=0.024 Score=57.03 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+||+|+..||||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.67 E-value=0.025 Score=58.68 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|-|||||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999876
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.61 E-value=0.022 Score=60.97 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|.+|+|||||+|+|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.57 E-value=0.024 Score=57.51 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCchHHHHHhhcC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
..++.|+||+||||||+-+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.56 E-value=0.024 Score=56.37 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999885
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.56 E-value=0.02 Score=55.59 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.028 Score=57.28 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-+.+|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3489999999999999999999887775
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.031 Score=58.81 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
|=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999988874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.028 Score=57.96 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|-||+|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.37 E-value=0.022 Score=62.73 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.-++++||||+|||+|.++||..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345689999999999999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.25 E-value=0.023 Score=55.56 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.03 Score=59.27 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|.||||+||||+.++||..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.14 E-value=0.026 Score=59.32 Aligned_cols=22 Identities=59% Similarity=0.927 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++.||||+||||+.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999876
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.029 Score=57.94 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
++||-|++|||||||-+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.041 Score=60.21 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|-|++||||||+.+.|...+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 789999999999999999987763
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.03 E-value=0.028 Score=55.46 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEccCCCchHHHHHhhcCCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+.|+|++||||||+-+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998643
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.19 Score=53.59 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 4589999999999999999999877765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.89 E-value=0.035 Score=54.59 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999984
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.89 E-value=0.03 Score=59.95 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.84 E-value=0.03 Score=58.74 Aligned_cols=23 Identities=57% Similarity=0.889 Sum_probs=20.7
Q ss_pred EEEEcCCCCChHHHHHHHhcccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++.||||+||||+.++|+..+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67899999999999999998763
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.72 E-value=0.035 Score=59.31 Aligned_cols=26 Identities=46% Similarity=0.782 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+-+++.||||+|||+|.++||..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 44557899999999999999999865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.034 Score=57.47 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999988764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.57 E-value=0.036 Score=58.86 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.-+++.||||+|||+|.++||..+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 347899999999999999999865
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.57 E-value=0.013 Score=57.44 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|.+|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.53 E-value=0.038 Score=57.68 Aligned_cols=22 Identities=64% Similarity=0.937 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|.||||+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999999865
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.50 E-value=0.038 Score=54.36 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988763
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.037 Score=59.49 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=23.6
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++..-++|.||||+|||+|.++||+.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3344558899999999999999999876
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.40 E-value=0.042 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.37 E-value=0.041 Score=57.55 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3899999999999999999875
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.044 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
++-+++.++|++||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999998863
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.34 E-value=0.042 Score=55.49 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3577888999999999999999994
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.33 E-value=0.039 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEEccCCCchHHHHHhhcCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++.|+||+||||||+-+.|+..
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.32 E-value=0.049 Score=56.21 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.|.++-+.|.||||||||.+.|+-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999998665
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.28 E-value=0.057 Score=59.60 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.25 E-value=0.038 Score=54.85 Aligned_cols=22 Identities=55% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.06 E-value=0.034 Score=56.55 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.+.++.|+||+||||||+-+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.04 E-value=0.041 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
-+.|+|++||||||+-+.|+-+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999854
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.041 Score=57.56 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++++++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.05 Score=55.94 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+|.+++|-|+.||||||+++.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999997764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.95 E-value=0.044 Score=54.67 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999998643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.91 E-value=0.046 Score=58.00 Aligned_cols=22 Identities=59% Similarity=0.978 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++.||||+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999865
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.86 E-value=0.049 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++.++|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887544
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.84 E-value=0.041 Score=55.55 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+.|+||+||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.80 E-value=0.049 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.80 E-value=0.044 Score=62.47 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.05 Score=53.97 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.71 E-value=0.049 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.66 E-value=0.047 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHhhcCCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.61 E-value=0.053 Score=54.78 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037155 199 MTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1403)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.52 E-value=0.053 Score=57.89 Aligned_cols=23 Identities=48% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
=+++.||||+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37789999999999999999865
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.51 E-value=0.051 Score=55.38 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchHHHHHhhcC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+++++|.+|+|||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999995
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.49 E-value=0.063 Score=55.26 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+.+++++||+|+||||.+-=||-++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999988788655
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.48 E-value=0.36 Score=51.37 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-++.|.++-|-||+|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 3489999999999999999999888776
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.052 Score=54.85 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
++.|+||+||||||.-+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999985
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.052 Score=53.48 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.40 E-value=0.056 Score=53.08 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998774
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.33 E-value=0.044 Score=60.60 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.8
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKT 936 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 936 (1403)
++.|.-+.|.|+.||||||||++|.+..+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 45666789999999999999999998554
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.31 E-value=0.056 Score=53.87 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHhhcC
Q 037155 914 TALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g 933 (1403)
+.|+||+||||||+-+.|+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.058 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.29 E-value=0.044 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
-++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.12 E-value=0.13 Score=51.29 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=26.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++..-..+ .|.=++|.||||+|||||...|.-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455544455 899999999999999999988864
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.06 E-value=0.068 Score=56.50 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
...++|.||+|+||||+++.|+..+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.98 E-value=0.069 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999999998654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.91 E-value=0.053 Score=57.63 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKT 936 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~ 936 (1403)
...+.|.||+|+|||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34588999999999999999998543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.076 Score=52.63 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77999999999999988765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.81 E-value=0.064 Score=55.35 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++||.||+||||||+-+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.06 Score=56.10 Aligned_cols=22 Identities=55% Similarity=0.976 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+-||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6789999999999999999875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.067 Score=53.03 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999987754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.072 Score=53.43 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998853
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.64 E-value=0.073 Score=54.85 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
++|.++-|.|.||||||||-+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999975
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.62 E-value=0.073 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEcCCCCChHHHHHHHhcccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|+|...+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 68999999999999999998653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.58 E-value=0.059 Score=61.43 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
-+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.062 Score=59.37 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCchHHHHHhhcC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.-.+||.||.|||||||++.|..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 55899999999999999999975
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.57 E-value=0.073 Score=54.73 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.4
Q ss_pred CCeEEEEEccCCCchHHHHHhhcC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999777764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=0.093 Score=51.37 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=25.2
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+||.+++|-|+=|||||||.+.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998655
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.56 E-value=0.07 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999953
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.55 E-value=0.068 Score=53.91 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhc
Q 037155 913 LTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~ 932 (1403)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.52 E-value=0.073 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.52 E-value=0.068 Score=52.51 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.09 Score=56.18 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|=+++|++|.|.||||||||||+-.++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999998887654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.29 E-value=0.064 Score=52.66 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998876
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.076 Score=54.74 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.1
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.|-+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.08 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.18 E-value=0.088 Score=54.68 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.2
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
=+++|+++-|.||+|+|||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999999877653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.085 Score=51.99 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.076 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.13 E-value=0.15 Score=50.86 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=26.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
.|+. +...-.|.=+++.|+||+|||||...|..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3443 44455789999999999999999988774
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.12 E-value=0.077 Score=52.45 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999987753
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.11 E-value=0.055 Score=59.94 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
-++|.||||+|||||++.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4689999999999999999998864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.076 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.03 E-value=0.11 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+++++||+|+||||.+-=||-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998888765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.092 Score=51.76 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6799999999999999998753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.85 E-value=0.063 Score=53.67 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999998754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.84 E-value=0.08 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+.|+||.||||||.-+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.84 E-value=0.078 Score=54.98 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhcccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999997653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=0.088 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.77 E-value=0.073 Score=52.56 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEccCCCchHHHHHhhcC
Q 037155 914 TALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g 933 (1403)
++++|.+|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.72 E-value=0.09 Score=52.60 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.09 Score=52.29 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 779999999999999998864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.092 Score=54.67 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++.+++|-|+-||||||+++.|+...
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.52 E-value=0.083 Score=54.76 Aligned_cols=22 Identities=50% Similarity=0.943 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+.||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 5789999999999999999865
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.38 E-value=0.099 Score=51.10 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.30 E-value=0.096 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999853
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.28 E-value=0.082 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.27 E-value=0.094 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.078 Score=52.10 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.19 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.22 E-value=0.095 Score=53.74 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+++|.||+||||||+-+.|+-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999999964
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.19 E-value=0.077 Score=52.53 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-++++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999998543
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.11 E-value=0.071 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=0.096 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999988753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.05 E-value=0.065 Score=57.80 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.5
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.03 E-value=0.091 Score=58.83 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+..+++.||||+||||+.++|++.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 567789999999999999999999876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.099 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.97 E-value=0.11 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.1
Q ss_pred CCeEEEEEccCCCchHHHHHhhcC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+..+++++||+|+||||.+-=||-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999777774
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.94 E-value=0.096 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++++|++|+|||||++.|.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.92 E-value=0.24 Score=49.33 Aligned_cols=34 Identities=32% Similarity=0.292 Sum_probs=27.2
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++.....+ .|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455555555 7888999999999999999887754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.90 E-value=0.11 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+-.+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999988788655
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.88 E-value=0.087 Score=54.93 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.9
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+++. ++||+|..+||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEeCCCccHHHHHHHHHhh
Confidence 4444 4999999999999999999873
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.86 E-value=0.077 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=8.4
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.85 E-value=0.12 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999999997663
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.85 E-value=0.1 Score=57.53 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCchHHHHHhhcC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.-.+||.||.|||||||++.|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.84 E-value=0.11 Score=50.90 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997774
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.80 E-value=0.19 Score=49.75 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=26.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
.|+. ++..-.|.=++|.|+||+|||||...|.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 55566799999999999999999877764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.70 E-value=0.12 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.095 Score=52.00 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.58 E-value=0.11 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|-|+.||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.58 E-value=0.099 Score=54.87 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 037155 200 TLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.49 E-value=0.13 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=17.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
...+++++||+|+||||.+-=||-.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999988888655
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.47 E-value=0.13 Score=52.87 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=20.0
Q ss_pred CeEEEEEccCCCchHHHHHhhcC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
..++.++||+|+||||.+-=|+-
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999888875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.46 E-value=0.13 Score=53.28 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-+.+|+++.|.|++|+|||||..-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3489999999999999999999877764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.45 E-value=0.13 Score=52.69 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037155 199 MTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1403)
+++|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999886
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.44 E-value=0.12 Score=50.68 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.12 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.37 E-value=0.12 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.|+||.||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999953
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.31 E-value=0.12 Score=51.56 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.|+||.||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=87.26 E-value=0.11 Score=56.68 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
++||.|++||||||+-+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 889999999999999888875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.22 E-value=0.14 Score=50.05 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.9
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+||.+++|-|+=|||||||.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHh
Confidence 47899999999999999999999885
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.18 E-value=0.13 Score=50.47 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999999875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.13 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.|.+++|-|+-||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999853
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.12 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4678999999999999988754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.10 E-value=0.092 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|-|+|||||||+.++|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999998765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=0.094 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 688999999999999987653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.05 E-value=0.12 Score=53.19 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=16.1
Q ss_pred CCeEEEEEccCCCchHHHHHhhcC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
...+++++||+|+||||.+-=||-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999877774
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.13 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998853
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.05 E-value=0.12 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=0.14 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988863
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.83 E-value=0.15 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.9
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
=+.+|+++.|.||+|+|||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999976553
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.76 E-value=0.15 Score=52.22 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037155 199 MTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1403)
+++|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 67999999999999999986
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.13 Score=50.81 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 037155 199 MTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.70 E-value=0.11 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.66 E-value=0.14 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4679999999999999987654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.60 E-value=0.13 Score=56.35 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+||+|.|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999985
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.53 E-value=0.13 Score=59.06 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
=++++||+|||||-|.+.||+.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.14 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.51 E-value=0.15 Score=50.25 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.45 E-value=0.1 Score=53.62 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCchHHHHHhhcC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
-.+++++||+|+||||.+-=||-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999877775
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.45 E-value=0.16 Score=52.92 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.4
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
-+.+|.++.|.|++|+|||||..-++-
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999999887764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.14 Score=52.52 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+++++||+|+||||.+-=||-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999988888665
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.37 E-value=0.12 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998775
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.29 E-value=0.15 Score=52.09 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHhhc
Q 037155 913 LTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~ 932 (1403)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.23 E-value=0.15 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
-++|+|+++||||||++.|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3789999999999999999754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.14 E-value=0.21 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999974
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.14 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.12 E-value=0.16 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999998853
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.11 E-value=0.15 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+|.+++|=|+-||||||+.+.|+-+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999999998644
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.07 E-value=0.15 Score=53.82 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+..+.|.||.|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.02 E-value=0.16 Score=49.95 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 037155 199 MTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.02 E-value=0.14 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+-|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=0.13 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.95 E-value=0.13 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=0.15 Score=50.19 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999876
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.91 E-value=0.16 Score=55.24 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999964
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.89 E-value=0.16 Score=55.53 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=23.4
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
...+.| .+++.||||+|||.|.++|++.+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 66678999999999999999976
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.88 E-value=0.14 Score=55.52 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999974
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.88 E-value=0.16 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999743
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.86 E-value=0.13 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.65 E-value=0.17 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999988763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.65 E-value=0.17 Score=49.88 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.++|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.59 E-value=0.15 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+.++|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.14 Score=50.08 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=0.18 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.7
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
-+.+|+++.|.|++|+|||||...++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999987765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.46 E-value=0.17 Score=49.25 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHhhcC
Q 037155 914 TALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g 933 (1403)
++++|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.45 E-value=0.19 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|-|++|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999887554
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.19 Score=49.60 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.2
Q ss_pred EEEEccCCCchHHHHHhhcC
Q 037155 914 TALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g 933 (1403)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.36 E-value=0.15 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCchHHHHHhhcCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.-+.++||+|+|||+|.++|+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 345678999999999999999974
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=0.15 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.04 E-value=0.16 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.99 E-value=4.2 Score=42.77 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCchHHHHHhhcC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998853
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.95 E-value=0.2 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.33 Score=48.06 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.61 E-value=0.21 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4688999999999999987764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.58 E-value=0.15 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.0
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998876
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.54 E-value=0.33 Score=48.17 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=25.5
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.|+..-. .-.|.=+.|.|+||+|||||...|..+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3444333 445778999999999999998887654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=84.47 E-value=0.21 Score=51.16 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhc
Q 037155 913 LTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~ 932 (1403)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.39 E-value=0.19 Score=52.35 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+-+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.25 E-value=0.2 Score=53.80 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.19 E-value=0.22 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.10 E-value=0.18 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.09 E-value=0.21 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.08 E-value=0.2 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999876
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.01 E-value=0.2 Score=50.41 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHhhcC
Q 037155 914 TALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g 933 (1403)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.89 E-value=0.26 Score=53.92 Aligned_cols=26 Identities=38% Similarity=0.646 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|...++++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 34457899999999999999999765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.80 E-value=0.22 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 037155 200 TLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1403)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.75 E-value=0.23 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037155 199 MTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1403)
.++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999883
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.67 E-value=0.25 Score=52.66 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+=++.|+++.|.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 46889999999999999999997666643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.52 E-value=0.22 Score=48.98 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHhhcC
Q 037155 914 TALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g 933 (1403)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.46 E-value=0.24 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988763
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.37 E-value=0.23 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 037155 200 TLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=0.23 Score=48.93 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.24 E-value=0.21 Score=49.02 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.21 E-value=0.23 Score=50.05 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+||+|.-.||||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.12 E-value=0.22 Score=51.43 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+.|.||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.11 E-value=0.24 Score=53.16 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.|-.|+..+|+|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 467899999999999999999999985
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.06 E-value=0.25 Score=50.07 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+++|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.05 E-value=0.28 Score=52.52 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHhhcCCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999954
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.95 E-value=0.19 Score=52.25 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHhhcCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+-+.||+|.||||+.++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999974
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.89 E-value=0.3 Score=51.97 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|=++.|++|-|-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 568999999999999999999998888754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.60 E-value=0.26 Score=51.05 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=0.27 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999884
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.52 E-value=0.43 Score=47.04 Aligned_cols=33 Identities=33% Similarity=0.243 Sum_probs=25.1
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
|+. ++-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 444 344556888999999999999998776643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.48 E-value=0.27 Score=50.67 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037155 199 MTLLLGPPGAGKTTLMLALA 218 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1403)
.++|+|++|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.41 E-value=0.28 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.41 E-value=0.27 Score=52.77 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=82.34 E-value=0.28 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.28 E-value=0.36 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
-++|+|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 478999999999999999998654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.27 E-value=0.29 Score=47.90 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.22 E-value=0.29 Score=52.42 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=25.3
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+-.|+..+|+|++|+|||||+..|+.-.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999998643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.11 E-value=0.29 Score=48.97 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEccCCCchHHHHHhhc
Q 037155 913 LTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~ 932 (1403)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.96 E-value=0.25 Score=48.54 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.86 E-value=0.29 Score=48.53 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 037155 199 MTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367999999999999986664
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.44 E-value=0.3 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.33 E-value=0.32 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEEEccCCCchHHHHHhhcCC
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
..+.|.||.|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999864
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.29 E-value=0.35 Score=51.49 Aligned_cols=21 Identities=48% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 037155 199 MTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1403)
-++|+|+.|||||||..+|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 478999999999999999953
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.26 E-value=0.29 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
-+.|.||+|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4679999999999999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.19 E-value=0.28 Score=53.57 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+||+|..-+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999983
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=81.06 E-value=0.33 Score=54.88 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=34.4
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1034 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1034 ~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
++..+|=.+|++|++.|.. |+.++...+ +.+.+|+.|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 3555677899999999997 666665443 45678999999999865
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.48 E-value=0.36 Score=49.76 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEEccCCCchHHHHHhhc
Q 037155 913 LTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~ 932 (1403)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=0.37 Score=47.00 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.06 E-value=0.36 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++++|.-.||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|