Citrus Sinensis ID: 037162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MDEEKGQTEESGKEKVVNVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPSLKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFIE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEEEEccccccccccccccccccccEEEEccccEEEEEEEEccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHccccHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEccccEEccccccccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccHHHcccEEEEcHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEEEcccccccccccccccccccccEEccccEEEEEEEEEcccEEEEEEEcccccccccccccccHHHccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccEEEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcEEEEHccccHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHccccccccEEEEEcccEEEEEEEccccccEccccccccccccccEEEEEEEccccEcc
Coil and Loop (DISEMBL)
mdeekgqteesgkEKVVNVALMEREDMPREELQTELRNGLVIVIEksdvaangrkpriiftcersgvyrdrspqgpkpikatgiqkckcpfklkgqkmanndDWALIVICGfhnhpatqyleghsfagrlSKEESNLLVdmsknnvkpkdILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKgvmeenmlpSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMEsdfskyptaltyirnsswtKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILdesrradslspdvfacgspeiaeykregrpiplsslhshRKKLDLLQVNqdesktlscmpEIEMIVKrfndsddpAKVQLLRKLRElanpastfllepevkgktrgrpslkaytsarrnpskfeyvlsnedgksipampsstlslqlkkpqkekicqsqplkpvpfitlfpsgirpyirgakdvaadgncgfRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLsnfepnpsydhwmimpnTGYLIAFKYNVIGLLISMQQCltflplrsipgprsshkIIAIGYIYGCHFIE
Flexible Loop (DISEMBL)
mdeekgqteesgkekvvnvALMEREDMPREELQTELRNGLVIVieksdvaangrkpriiftcersgvyrdrspqgpkpikatgiqkCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVdmsknnvkpkdilhvlkkrdmhnaTTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDesrradslspdVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVkrfndsddPAKVQLLRKLRelanpastfllepevkgktrgrpslkaytsarrnpskFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKicqsqplkpvpfITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFIE
Low Complexity Region (SEG)
MDEEKGQTEESGKEKVVNVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPSLKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFIE
Disordered region (IsUnstruct)
***********************************LRNGLVIVIEKSDVAANGRKPRIIFTCERSGVY***********KATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGR******************PKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRL*****DFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDE**********VFAC*****************************************CMPEIEMIVKRF*******************************************************************************************LKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFI*
Disordered Region (DISOPRED)
*****************NVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERS*********************CKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKL********************************************************************************PFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSN****PSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFI*
Disordered Region (DISEMBL)
**************KVVNVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPSLKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSL***********QSQPLKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFIE
Disordered Region (DISPRO)
****KGQTEESGKEKVVNVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYR************TGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEP***********************************************************SQPLKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFIE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEEKGQTEESGKEKVVNVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPSLKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
147776975	773	hypothetical protein VITISV_001036 [Viti	0.622	0.554	0.406	1e-105
297744547	701	unnamed protein product [Vitis vinifera]	0.641	0.630	0.384	1e-104
356536595	877	PREDICTED: uncharacterized protein LOC10	0.941	0.740	0.320	2e-99
356499731	878	PREDICTED: uncharacterized protein LOC10	0.940	0.738	0.315	4e-99
357468715	975	Otubain [Medicago truncatula] gi|3555056	0.865	0.611	0.275	5e-60
92893886	985	Ovarian tumour, otubain [Medicago trunca	0.927	0.648	0.250	2e-56
124361025	1063	Ovarian tumour, otubain, putative [Medic	0.927	0.601	0.249	2e-56
356529783	1403	PREDICTED: uncharacterized protein LOC10	0.624	0.306	0.293	5e-56
357438051	1379	Cysteine-rich receptor-like protein kina	0.814	0.406	0.255	4e-49
87241356	795	Ovarian tumour, otubain [Medicago trunca	0.714	0.618	0.262	1e-44

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 297/534 (55%), Gaps = 105/534 (19%)

Query: 24  REDMPREELQTELRNGLVIVIEKSDVAANGR-KPRIIFTCERSGVYRDRSPQGPKPIK-- 80
           RE +     +T  RNG+VI+I+++D+ A  R +PRI F CERSG YR       +  K  
Sbjct: 16  REALIEWVRETGKRNGMVIIIQRADIGATNRSRPRITFVCERSGAYRHTGXDKGEEGKKK 75

Query: 81  ----ATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESN 136
               ATG +KC CPF L+G K+   D+W L+V CG HNHP  Q++EGHSFAGRLS EE  
Sbjct: 76  RKRKATGTKKCGCPFSLRGIKLPLADEWTLVVKCGTHNHPGGQHVEGHSFAGRLSMEEIG 135

Query: 137 LLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLM----- 191
           +L+D+SK+ +KPK+IL+ LK+RD  N TTI+ IYNAR K K  E AG S MQ LM     
Sbjct: 136 ILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKANENAGGSLMQQLMNKLME 195

Query: 192 ----------------------------------KIVGVTSTDLTFSVCCVYLESERENN 217
                                             ++VGVTST+ TFSV   YL SERE  
Sbjct: 196 FKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVVGVTSTEKTFSVAFAYLGSEREEA 255

Query: 218 YIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKL 277
             WALERL+  ++  MLP V++ DRE +LM A++K FP A+ LLCRWHIS N+LANCK  
Sbjct: 256 XTWALERLRSXIDXAMLPRVVMTDREPSLMNALQKVFPMASNLLCRWHISTNILANCKIF 315

Query: 278 FETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIR------------ 325
           FE+    + FIS WNJ+VLA + +E+A RL  +ES F +Y  A+ Y +            
Sbjct: 316 FESKSRLDAFISMWNJVVLAETXDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFV 375

Query: 326 ------------------------------------NSSWTKVHTLLELQLVEIKASLER 349
                                                SSW K+H+LLELQ  +IK S E 
Sbjct: 376 AVWTNKVMHFGNTTVNRAESTRAKLKRQLGLSXGDIESSWPKIHSLLELQHXDIKTSFEI 435

Query: 350 SLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFACG-----------SP 398
           SLT VQH+FK  ++ E+R  V+ +AL +++DE+ R++S+  D  ACG           + 
Sbjct: 436 SLTNVQHNFKDPLYGEVRGSVSKSALCILVDEANRSESIGVDASACGCVYSRTHGLPCAH 495

Query: 399 EIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSD 452
           EI+ YK  G+PIPL+ +  H +KLDL+ V+  + + +S    +E+  KRF D+D
Sbjct: 496 EISSYKIRGQPIPLACVDPHWRKLDLVSVSGKKVQDVSFTTAMELFYKRFMDAD 549

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 304/559 (54%), Gaps = 117/559 (20%)

Query: 190 LMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKA 249
           L+++VGVTST+ TFSV   YL SERE  + WALERL+ ++++ MLP V++ DRE +LM A
Sbjct: 117 LLEVVGVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMIDDAMLPRVVMTDREPSLMNA 176

Query: 250 IKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKS 309
           ++K FP A+ LLCRWHIS N+LANCK  FE+    + FIS WN++VLA +E+E+A RL  
Sbjct: 177 LQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNIVVLAETEDEYANRLNQ 236

Query: 310 MESDFSKYPTALTYIR-------------------------------------------- 325
           +ES F +Y  A+ Y +                                            
Sbjct: 237 LESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAESTRAKLKRQLGLS 296

Query: 326 ----NSSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDE 381
                SSW K+H+LLELQ ++IK S E SLT VQH+FK  ++ E+R  V+ +AL +++DE
Sbjct: 297 RGDIESSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRGSVSKSALCILVDE 356

Query: 382 SRRADSLSPDVFACG-----------SPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQD 430
           + R++S+  D  ACG           + EI+ YK  G+PIPL+ +  H +KLDL+ V+  
Sbjct: 357 ANRSESIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDPHWRKLDLVSVSGK 416

Query: 431 ESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPSLK 490
           + + +S    +E+  KRF D+DD  K QL+ KL EL N  ST L+ P+   KT       
Sbjct: 417 KVQDVSFTTAMELFYKRFMDADDIGKQQLVMKLMELVNSTSTSLVAPKENVKT------- 469

Query: 491 AYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKPVPFITLFP 550
                                                   KE    S P    P+I    
Sbjct: 470 ----------------------------------------KEGCTSSFPEGLQPYIM--- 486

Query: 551 SGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYA 610
                     KDVAADGNCGFR +A  +G+GE+ W +VRRD++ EL+ ++ EY  L    
Sbjct: 487 --------HVKDVAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWAEYAQLFRDP 538

Query: 611 GRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGP 670
            R  EL+H+L +F+    YD WM MP+ G++IA +YNV+ + ISMQ CLTFLPLRS P P
Sbjct: 539 IRVDELIHVLEHFQSPADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPLRSAPTP 598

Query: 671 RSSHKIIAIGYIYGCHFIE 689
               ++++IG+I   HF+E
Sbjct: 599 LPMRRVLSIGFINDNHFVE 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 257/801 (32%), Positives = 393/801 (49%), Gaps = 152/801 (18%)

Query: 24  REDMPREELQTELRNGLVIVIEKSDVAA--------NGRKPRIIFTCERSGVYRDRSPQG 75
           RE M          NG V++I +S+ +         N RK  +I  C+RSG YR     G
Sbjct: 39  REAMLNWARDVAKENGFVLIILRSETSTTCTRSTRCNQRKTFVIMGCDRSGKYR-----G 93

Query: 76  PK----PIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLS 131
           P       K +G +KC+CPFKLKG+ +   + W + V+CG HNH   + L GH +AGRLS
Sbjct: 94  PYKNELSRKVSGTRKCECPFKLKGKALKKAEGWIVKVMCGCHNHDLEETLVGHPYAGRLS 153

Query: 132 KEESNLLVDMSKNNVKPKDIL----------------------------------HVLK- 156
            EE +L+  ++K+ +KPKDIL                                  H+LK 
Sbjct: 154 AEEKSLVDALTKSMMKPKDILLTLKDHNMGNVTTIKQIYNARQAYRSSKKGSEMQHLLKL 213

Query: 157 ---------KRDMHNATTIRAIY-------------NARRKCKVREQAGRSQMQLLMKIV 194
                     R + ++  IR I+             N         +  R Q+ LL +IV
Sbjct: 214 LEHDRYVYWHRKVDDSDAIRDIFWTHPDAIKLLGAFNTVLVIDSTYKTTRYQLPLL-EIV 272

Query: 195 GVTSTDLTFSVCCVYLESERENNYIWALERLKGVM-EENMLPSVIVIDRELALMKAIKKK 253
           GVTST+LTFS    ++ESER  N+ WAL++L+G++ +++ +P VIV   ++ALM A++  
Sbjct: 273 GVTSTELTFSAAFAFVESERAENFTWALKKLRGLIAKDDDMPQVIVTVGDIALMSAVQVV 332

Query: 254 FPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESD 313
           FPS++ LLCR+HI++NV A CK +    E  E  + +W+++V + +E E+ QRL   E+ 
Sbjct: 333 FPSSSNLLCRFHINQNVKAKCKSIVHLKEKQELMMDAWDVVVNSPNEGEYMQRLAFFENV 392

Query: 314 FSKYPTALTYIRN----------------------------------------------- 326
              +P    Y++N                                               
Sbjct: 393 CLDFPILCDYVKNTWLIPHKEKFVTAWTNQVMHLGNTATNRVEATHWRLKTLLQDSKEDM 452

Query: 327 -SSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRA 385
            S W  +  ++ LQ  EI+AS E+S+ +V+H      + +L  FV+ +AL+ I+DE  R 
Sbjct: 453 CSYWDAMKNIITLQHKEIEASFEKSINVVEHRHNTPFYIKLVGFVSRSALSHIIDEYDRV 512

Query: 386 DSLSPDVFACG-----------SPEIAEYKREGRPIPLSSLHSHRKKLDLL-QVNQDESK 433
            +   D   CG           + E+A Y     PIPL ++H H +KL     V+ DE  
Sbjct: 513 KTAGIDSSICGCIVRTTHGLPCACELARYNTMCHPIPLEAIHVHWRKLKFSDHVSNDEGT 572

Query: 434 TLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGR---PSLK 490
            LS  PEI  +  RF + D   K+ L+ KL E+A P       P  +  T+     P LK
Sbjct: 573 ELSLQPEIGALYNRFQELDYAGKIILMAKLHEIAFPVKISKCPPLEEVGTKHALEGPRLK 632

Query: 491 AYTSARRNPSKFEYVLSNEDGKSIP-AMPSSTLSLQLKKPQKEKICQSQPLKPVPFITLF 549
           +  S + +PS +E+V +      I  ++PSS      +KP  E    S+  + +P +  F
Sbjct: 633 SDGSTKFDPSYWEHVHALHPTHDITKSLPSS------QKPVHE----SKRRRVLPMMDQF 682

Query: 550 PSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGY 609
           P  I P+I    DV  D NCG+R VA  +G+GE++WA VR+DL+ ELQ   + Y  L G 
Sbjct: 683 PVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQDNYAKLFGS 742

Query: 610 AGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPG 669
             R  EL   L       S   WM +P+ GY+IA +YNV+ + +S+Q+C+TF PLR  P 
Sbjct: 743 NDRVAELRQSLY-VGKQASVASWMTIPDMGYVIASRYNVVLVTLSLQECMTFFPLRGRPP 801

Query: 670 -PRSSHKIIAIGYIYGCHFIE 689
             +SS+++I+IG+++ CHF++
Sbjct: 802 LSQSSYRLISIGFVHKCHFVQ 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 253/803 (31%), Positives = 390/803 (48%), Gaps = 155/803 (19%)

Query: 24  REDMPREELQTELRNGLVIVIEKSDVAA-----------NGRKPRIIFTCERSGVYRDRS 72
           RE M          NG V++I +S+ +            N RK  +I  C+RSG YR   
Sbjct: 39  REAMLNWARDVAKENGFVLIILRSETSTRSTKYTRSTRCNQRKTFVIMGCDRSGKYR--- 95

Query: 73  PQGPK----PIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAG 128
             GP       K +G +KC+CPFKLKG+ +   + W + V+CG HNH   + L GH +AG
Sbjct: 96  --GPYKNALSRKVSGTRKCECPFKLKGKALKKAEGWIVKVMCGCHNHDLEETLVGHPYAG 153

Query: 129 RLSKEESNLLVDMSKNNVKPKDIL----------------------------------HV 154
           RLS EE +L+  ++K+ +KPKDIL                                  H+
Sbjct: 154 RLSAEEKSLVDALTKSMMKPKDILLTLKDHNMGNVTTIKQIYNARQAYRSSKKGSEMQHL 213

Query: 155 LK----------KRDMHNATTIRAIY-------------NARRKCKVREQAGRSQMQLLM 191
           LK           R + ++  IR I+             N         +  R Q+ LL 
Sbjct: 214 LKLLEHDRYVYWHRKVDDSDAIRDIFWTHPDAIKLLGAFNTVLIIDSTYKTTRYQLPLL- 272

Query: 192 KIVGVTSTDLTFSVCCVYLESERENNYIWALERLKG-VMEENMLPSVIVIDRELALMKAI 250
           +IVGVTST+LTFSV   ++ESER +N+ WAL++L+G +++E+ +P VIV   ++ALM A+
Sbjct: 273 EIVGVTSTELTFSVAFAFVESERADNFTWALQKLRGLIVKEDDMPQVIVTVGDIALMSAV 332

Query: 251 KKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSM 310
           +  FPS++ LLCR+HI++NV A CK +  + E  +  + +W+++V + +E E+ QRL   
Sbjct: 333 QVVFPSSSNLLCRFHINQNVKAKCKSIVHSKEKQDMVMDAWDVIVNSPNEGEYMQRLAFF 392

Query: 311 ESDFSKYPTALTYIRN-------------------------------------------- 326
           E+    +P    Y++N                                            
Sbjct: 393 ENVCLDFPIFGDYVKNTWLIPHKEKFVTAWTNRVMHLGNTATNRVEATHWRLKTLLQDSK 452

Query: 327 ----SSWTKVHTLLELQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDES 382
               S W  +  ++ LQ  EI+AS E+S  +V+H      + +L  FV+ +AL+ I +E 
Sbjct: 453 EDMCSYWDAMKNMITLQHTEIEASFEKSKNVVEHRHNTPFYVKLVGFVSRSALSHITEEY 512

Query: 383 RRADSLSPDVFACG-----------SPEIAEYKREGRPIPLSSLHSHRKKLDLL-QVNQD 430
            R  +   D   CG           + E+A Y     PIPL ++H+H +KL        D
Sbjct: 513 DRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEAIHAHWRKLKFSDHGTND 572

Query: 431 ESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPS-- 488
               LS  PE++ + KRF + D   K+ L+ KL E+A P +     P  +  T+G P   
Sbjct: 573 NGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTALKCLPPEEVGTKGAPEGL 632

Query: 489 -LKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKPVPFIT 547
             K+  S + +PS  E  L           P+   +  L   QK  + +S+  + +P + 
Sbjct: 633 RWKSDGSTKFDPSYLELALR----------PARDSTSSLSSSQK-TVHESKRRRVLPMMD 681

Query: 548 LFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLL 607
            FP  I P+I    DV  D NCG+R VA  +G+GE++WA VR+DL+ ELQ   + Y  L 
Sbjct: 682 QFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQDNYAKLF 741

Query: 608 GYAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSI 667
           G   R  EL   L       S   WM +P+ GY+IA +YNV+ + +S+Q+C+TF PLR  
Sbjct: 742 GSNDRVAELRKSLY-VGKQASVASWMTIPDMGYVIASRYNVVLVTLSLQECMTFFPLRGR 800

Query: 668 PG-PRSSHKIIAIGYIYGCHFIE 689
           P   +SSH++I+IG+++ CHF++
Sbjct: 801 PPLSQSSHRLISIGFVHKCHFVQ 823

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468715|ref|XP_003604642.1| Otubain [Medicago truncatula] gi|355505697|gb|AES86839.1| Otubain [Medicago truncatula]

 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 187/679 (27%), Positives = 323/679 (47%), Gaps = 83/679 (12%)

Query: 53  GRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGF 112
           GR   +   CERSG ++   P+     + T  +KC C FK++G  +  ++ W L+++ G 
Sbjct: 25  GRNAMLELVCERSGEHK--VPKTKVKHEGTRSRKCGCLFKVRGYVVREDNAWKLVILNGV 82

Query: 113 HNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNA 172
           HNH    Y+  +  AGRL++++  ++ D++ ++VKPK+IL  LKK+   + T I+ +YN 
Sbjct: 83  HNHEMVPYVAENLLAGRLTEDDKKIVHDLTDSSVKPKNILTNLKKKRKESITNIKQVYN- 141

Query: 173 RRKCKVREQAGRSQMQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEEN 232
                               IVGVTST LT+SV   ++ S +E+N+ WAL+ L  ++E N
Sbjct: 142 -------------------NIVGVTSTYLTYSVGFAFMTSGKEDNFTWALQMLLKLLEPN 182

Query: 233 M-LPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNV----LANC------------K 275
             +P V+V D + ++MKA+    P ++ +LC +H+ +NV    + +C            K
Sbjct: 183 SDMPKVVVTDMDPSMMKAVIDVLPDSSAILCYFHVGKNVRSRIITDCKVKQNVVVVDGQK 242

Query: 276 KLFET---NEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRNS----- 327
           K+ +    +++ +T   +W  LV + ++E +A  L   +     +P  L Y+  +     
Sbjct: 243 KIVDEESRSKLVDTIFDAWEKLVESPTQELYAGNLVEFQDACKDHPKFLEYVETTILKPL 302

Query: 328 --SWTKVHTLLELQL-VEIKASLERSLTMVQHDFKP-SIFKELREFVAMNALTMI-LDES 382
                +  T L L L V  +  L+ S+T+++H +K  +++  L   ++  A+  I ++E+
Sbjct: 303 KDKLVRACTDLVLHLGVGPRIELKESVTVLEHRYKDVTLYSGLGGHMSRQAMNFIFVEEA 362

Query: 383 RRADSLSPDVFACGSPEIAEYK-----------REGRPIPLSSLHSHRKKLDLLQVNQDE 431
           R   +L  +   CG  +   Y               +PI L  +H H  KL + +   +E
Sbjct: 363 RARKTLCIEKKTCGCVQRTSYGLPCACFIAMKIHHNKPIRLDEIHPHWHKLYMGEEESNE 422

Query: 432 SKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRPSLKA 491
               S   E   I +R         +Q+   LR LA P +T L  P  K  T+  P  K 
Sbjct: 423 D-LFSVAEEWRGIQERLERVPFQMILQIKEGLRLLAFPDTTLLSPPPRKVPTKEAP--KK 479

Query: 492 YTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKK-PQKEKICQSQPLKPVPFITLFP 550
             + R NPS +E +    D +   +  S    + +   P    I  S+   P   +   P
Sbjct: 480 IKTTRWNPSSWETI----DSQHPESQSSKGARIGISPVPVPTPISVSRNYDPSCPMYYMP 535

Query: 551 SGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYA 610
             +RPYI    DV +DG+CGFR +A+ +G+ E++   V+R L+ EL+ H ++Y  +    
Sbjct: 536 KFMRPYIERIVDVISDGHCGFRAIAESVGLTEESHVMVQRALIKELKEHRSKYIEIYASE 595

Query: 611 GRYQELLHLL------SNFEPNPSYDHWMIMPNTGYLIAFKYN--VIGLLISMQQCL-TF 661
            RY  +L  L      S+F P    D W+ +P+ G+++A  YN  V+ +   +     TF
Sbjct: 596 RRYNYILDGLYPPKNASSFAPP---DKWLTLPDMGHIVASCYNRPVLEMTTHLDYISETF 652

Query: 662 LPLRSIPGPRSSHKIIAIG 680
            PLR  P       +I +G
Sbjct: 653 FPLRGRPPVNPKSNMIFLG 671

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|92893886|gb|ABE91936.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 204/814 (25%), Positives = 355/814 (43%), Gaps = 175/814 (21%)

Query: 37  RNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQ 96
           + G  IV ++S +      P     CERSG +    P+       TG +KC C F + G 
Sbjct: 88  KAGFTIVTQRSSLI----NPMFRLVCERSGSHI--VPKKKPKHANTGSRKCGCLFMISGY 141

Query: 97  KMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKD-ILHV- 154
           +     +W L ++ G HNHP    LEGH  AGRL +++  ++ D++K+ + P++ ++H+ 
Sbjct: 142 QSKQTKEWGLNILNGVHNHPMEPALEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLK 201

Query: 155 ----------------------------------LKKRDMHNAT----------TIRAIY 170
                                             + K + HN T          TI  I+
Sbjct: 202 NQRPHCMTNVKQVYNERQQIWKANRGDKKPLQFLISKLEEHNYTYYSRTQLESNTIEDIF 261

Query: 171 ----------NARRKCKVREQAGRSQM--QLLMKIVGVTSTDLTFSVCCVYLESERENNY 218
                     N      V +   ++ M    + ++VGVTSTDLT+SV   ++  E+E N+
Sbjct: 262 WAHPTSIKLFNNFPTVLVMDSTYKTNMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENF 321

Query: 219 IWALERLKGVMEENM-LPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNV----LAN 273
           +W L  L+ ++   M +  VIV DR+++LMKA+   FP +  L C +H+  NV    + N
Sbjct: 322 VWVLTMLRKLLSSKMNMHKVIVTDRDMSLMKAVAHVFPESYALNCFFHVQANVKQRCVLN 381

Query: 274 CK---------KLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPT----A 320
           CK         K     ++ +  +++W  +V + +++ +A  L   +   S +P     A
Sbjct: 382 CKYPLGFKKDGKEVSNRDVVKKIMNAWKAMVESPNQQLYANALVEFKDSCSDFPIFVDYA 441

Query: 321 LT-------------------------------------YIRNS------SWTKVHTLLE 337
           +T                                     Y+ NS       W K+H +L 
Sbjct: 442 MTTLDEVKDKIVRAWTDHVLHLGCRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLL 501

Query: 338 LQLVEIKASLERSLTMVQHDFKP-SIFKELREFVAMNALTMI-LDESRRADSLSPDVFAC 395
           LQ   I+ S  +++ +++H FK  +++  L   V+ NAL  I L+E R  ++L  D   C
Sbjct: 502 LQFTAIQTSFGQNVCVLEHRFKDVTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDIC 561

Query: 396 G-----------SPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEMI 444
           G           + EIA    + +PI L  ++ H  +L + + + +++  +    E++ I
Sbjct: 562 GCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLSMGEQSNEDAFCVEV--ELKAI 619

Query: 445 VKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRP-------SLKAYTSARR 497
           V+R        K+++   LR+LA P +T +  P  K  T+G         S    TS  R
Sbjct: 620 VERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSR 679

Query: 498 NPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKP---------VPF--- 545
            PS +E V+ +++  S P+   +T S + KK  +       PL P         +P    
Sbjct: 680 IPSSWE-VVDSQNPDSQPSPSPTTSSYKRKKGARLGKTSLSPLPPPTRYPKPKAIPVMRP 738

Query: 546 ITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTL 605
           I   P  + P+I    DV  DG+CGFR +A+ +G+ E N   +R  L+ EL  H ++Y  
Sbjct: 739 IDYMPRFMVPFIEKVVDVIGDGHCGFRAIAEFMGLTEKNHLMIRTHLIQELMDHRDDYVE 798

Query: 606 LLGYAGRYQELLHLLSNFEPNPS-------YDHWMIMPNTGYLIAFKYNVIGLLIS---M 655
           +     RY    ++L+   P  +        D W+  P+ G+++A  Y +  ++++   +
Sbjct: 799 VFAGEDRYN---YILNGLHPPANTKTCAHLVDKWLTFPDMGHIVANYYKMCVVVLTNLEV 855

Query: 656 QQCLTFLPLRSIPGPRSSHK-IIAIGYIYGCHFI 688
            +  +F PLR  P P +    I+ +G I   HF+
Sbjct: 856 GKSESFFPLRGPPPPGNQKTPILCLGAIPN-HFV 888

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361025|gb|ABN08997.1| Ovarian tumour, otubain, putative [Medicago truncatula]

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 203/814 (24%), Positives = 350/814 (42%), Gaps = 175/814 (21%)

Query: 37  RNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQ 96
           + G  IV ++S +      P     CERSG +    P+       TG +KC C F + G 
Sbjct: 166 KAGFTIVTQRSSLI----NPMFRLVCERSGSHI--VPKKKPKHANTGSRKCGCLFMISGY 219

Query: 97  KMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKD-ILHV- 154
           +     +W L ++ G HNHP    LEGH  AGRL +++  ++ D++K+ + P++ ++H+ 
Sbjct: 220 QSKQTKEWGLNILNGVHNHPMEPALEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLK 279

Query: 155 ----------------------------------LKKRDMHNAT----------TIRAIY 170
                                             + K + HN T          TI  I+
Sbjct: 280 NQIPHCMTNVKQVYNERQQIWKANRGDKKPLQFLISKLEEHNYTYYSRTQLESNTIEDIF 339

Query: 171 ----------NARRKCKVREQAGRSQM--QLLMKIVGVTSTDLTFSVCCVYLESERENNY 218
                     N      V +   ++ M    + ++VGVTSTDLT+SV   ++  E+E N+
Sbjct: 340 WAHPTSIKLFNNFPTVLVMDSTYKTNMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENF 399

Query: 219 IWALERLKGVMEENM-LPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNV----LAN 273
           +W L  L+ ++   M +P VIV DR+++LMKA+   FP +  L C +H+  NV    + N
Sbjct: 400 VWVLTMLRKLLSSKMNMPKVIVTDRDMSLMKAVAHVFPESYALNCFFHVQANVKQRCVLN 459

Query: 274 CK---------KLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPT----A 320
           CK         K     ++ +  +++W  +V + +++ +A  L   +   S +P     A
Sbjct: 460 CKYPLGFKKDGKEVSNRDVVKKIMNAWKAMVESPNQQLYANALVEFKDSCSDFPIFVDYA 519

Query: 321 LT-------------------------------------YIRNS------SWTKVHTLLE 337
           +T                                     Y+ NS       W K+H +L 
Sbjct: 520 MTTLDEVKDKIVRAWTDHVLHLGCRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLL 579

Query: 338 LQLVEIKASLERSLTMVQHDFKP-SIFKELREFVAMNALTMILDESRRADS---LSPDVF 393
           LQL  I+ S  +++ +++H FK  +++  L   V+ NAL  I  E +R      +  D++
Sbjct: 580 LQLTAIQTSFGQNVCVLEHRFKDVTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDIY 639

Query: 394 AC------GSP---EIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMP-EIEM 443
            C      G P   EIA    + +PI L  ++ H  +L +    +  +K   C+  E++ 
Sbjct: 640 GCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLSM---GEQSNKDAFCVEVELKA 696

Query: 444 IVKRFNDSDDPAKVQLLRKLRELANPASTFLLEPEVKGKTRGRP-------SLKAYTSAR 496
           IV+R        K+++   LR+LA P +T +  P  K  T+G         S    TS  
Sbjct: 697 IVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTS 756

Query: 497 RNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKKPQKEKICQSQPLKP---------VPF-- 545
           R PS +E V+ +++  S P+   +T S + KK  +       PL P         +P   
Sbjct: 757 RIPSSWE-VVDSQNPDSQPSPSPTTSSYKRKKGARLGKTSLSPLPPPTRYPKPKAIPVMR 815

Query: 546 -ITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYT 604
            I   P  + P+I     V  DG+CGF  +A+ +G+ E N   +R  L+ EL  H ++Y 
Sbjct: 816 PIDYMPRFMLPFIEKVVHVIGDGHCGFWAIAEFMGLTEKNHLMIRTHLIQELMDHRDDYV 875

Query: 605 LLLGYAGRYQELLHLLSNFEPNPS-------YDHWMIMPNTGYLIAFKYNVIGLLIS--- 654
            +     RY    ++L+   P  +        D W+  P+ G+++A  Y +  ++++   
Sbjct: 876 EVFAGEDRYN---YILNGLHPPANTKTCAHLVDKWLTFPDMGHIVANYYKMCVVVLTNLE 932

Query: 655 MQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHFI 688
           + +  +F PLR  P P +   +I        HF+
Sbjct: 933 VGKSESFFPLRGPPPPGNQKTLILCLGAIPNHFV 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]

 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 166/565 (29%), Positives = 260/565 (46%), Gaps = 135/565 (23%)

Query: 38   NGLVIVIEKSDVAANGRKPRI------IFTCERSGVYRDRSPQGPKPIKATGIQKCKCPF 91
            NG V+ I +S+      K  I      I  CERSG YR   P      K T  +KC+CPF
Sbjct: 824  NGFVLTILRSETHTGSNKKNIRGKTYVILGCERSGKYR---PYKNTLSKVTSSKKCECPF 880

Query: 92   KLKGQKMANNDDWALIVICGFHNHPATQYL-EGHSFAGRLSKEESNLLVDMSKNNVKPKD 150
            KLKG+ +  ++ W + V+CG+HNH   + L  GHS+AGRL+ EE +L++DM+K  V+P++
Sbjct: 881  KLKGKALNKDEGWIVKVMCGYHNHDLGETLVVGHSYAGRLTAEEKSLVIDMTKKMVEPRN 940

Query: 151  ILHVLKKRDMHNATTIRAIYNARRKCKVREQAGRSQMQLLMKIV----------GVTSTD 200
            IL  LK  D +N TTIR IYNAR+  +  ++  R++MQ L+K++           V  +D
Sbjct: 941  ILLTLK--DHNNDTTIRHIYNARQAYRSSQKGPRTEMQHLLKLLEHDQYVCWSRKVDDSD 998

Query: 201  L----------------TFSVCCVYLESERENNYIWALERLKGVMEENMLPSV------- 237
                             +F        + + N Y   L  + GV    +  SV       
Sbjct: 999  AIRDIFWAHPDAIKLLGSFHTVLFLDNTYKVNRYQLPLLEIVGVTSTELTFSVAFAYMES 1058

Query: 238  ----------------IVIDREL----------ALMKAIKKKFPSATTLLCRWHISRNVL 271
                            IV D E+          ALM A++  FPS++ LLCR+HIS+NV 
Sbjct: 1059 DEVDNFTWALQKLRELIVKDNEMPPVIITVRDIALMDAVQVVFPSSSNLLCRFHISKNVK 1118

Query: 272  ANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIRN----- 326
            A CK +    E ++  + +W+ ++ + +E E+ QRL  +E   S +PT   Y++N     
Sbjct: 1119 AKCKLIVHPKERYDLVMDAWDSVMNSPNEGEYMQRLTLLEKVCSDFPTFGDYVKNTWLIP 1178

Query: 327  -------------------------------------------SSWTKVHTLLELQLVEI 343
                                                       S W  V+ +++LQ  +I
Sbjct: 1179 HKEKFVMAWVDRVMHLGNTTIDRFETAHWRLENLLQDSGGDMCSCWDAVNNMIKLQHTQI 1238

Query: 344  KASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSPDVFA--CG----- 396
            K S E+S+ +V+  +    + +LR FV+ NAL+ I D   R  ++  D+    CG     
Sbjct: 1239 KVSFEKSINIVE--YNDPFYSKLRGFVSRNALSYIADHYDRVKTVGIDIDGSLCGCTIRT 1296

Query: 397  ------SPEIAEYKREGRPIPLSSLHSHRKKLDLL-QVNQDESKTLSCMPEIEMIVKRFN 449
                  + E+A+Y R   PIPL ++H H + L+   Q   +E   L+   E++ +  +F 
Sbjct: 1297 THGLPCACELAKYSRTWHPIPLQAIHVHWRTLNFSDQEMNNEGLELALQREVDALHNQFQ 1356

Query: 450  DSDDPAKVQLLRKLRELANPASTFL 474
            + D   K+ L  KLRELA P +  +
Sbjct: 1357 ELDYAGKITLKAKLRELAFPDAILM 1381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438051|ref|XP_003589301.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355478349|gb|AES59552.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula]

 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 189/739 (25%), Positives = 324/739 (43%), Gaps = 178/739 (24%)

Query: 111 GFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRA-- 168
            FHNHP    LEGH  AGRL +E+  ++ D++K+ + P++IL  LK +  H  T ++   
Sbjct: 161 AFHNHPMEPALEGHILAGRLKEEDKKIVRDLTKSKMLPRNILIHLKNQRPHCMTNVKQVY 220

Query: 169 -----IYNARRK---------CKVREQA----GRSQMQ---------------------- 188
                I+NA R           K+ E       R+Q++                      
Sbjct: 221 NERQQIWNANRGDKKPLQFLISKLEEHNYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFP 280

Query: 189 --LLM--------------KIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEEN 232
             L+M              ++VGVTSTDLT+SV   ++  E+E N++W L+ L+ ++   
Sbjct: 281 TVLVMDSTYKTNMYRMPMFEVVGVTSTDLTYSVGFEFMTHEKEENFVWVLKMLRKLLSSK 340

Query: 233 M-LPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNV----LANCK---------KLF 278
           M +P VIV DR+++LMKA+   FP +  + C +H+  NV    + +CK         K  
Sbjct: 341 MNVPKVIVTDRDMSLMKAVAHVFPESYAMNCYFHVQANVKQRCVLDCKYHLGFKKDGKEV 400

Query: 279 ETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPT----ALT------------ 322
              ++ +  + +W  +V + +++ +A  L   +   S +P     A+T            
Sbjct: 401 SNRDVVKKIMKAWKAMVESPTQQLYANALLEFKDSCSDFPIFVDCAMTTLNEVKDKIVRE 460

Query: 323 -------------------------YIRNS------SWTKVHTLLELQLVEIKASLERSL 351
                                    Y+ NS       W K+H +L LQ   I+ S   S+
Sbjct: 461 WTDHVLHLGCRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHDMLLLQFTAIQTSFGHSV 520

Query: 352 TMVQHDFKP-SIFKELREFVAMNALTMI-LDESRRADSLSPDVFACG-----------SP 398
            M++H FK  +++  L   V+  AL  I L+E+R  ++L  D   CG           + 
Sbjct: 521 CMLEHRFKDVTLYSGLGGHVSRYALDNIALEETRCRETLCMDNDICGCAQRTSYGLPCAC 580

Query: 399 EIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSCMPEIEM--IVKRFNDSDDPAK 456
           EIA    + +PI L  ++ H  +L +     +ES  ++   E+E+  IV+         K
Sbjct: 581 EIATKLLQEKPILLDEIYHHWLRLYM----GEESNEVAFCVEVELKAIVECLKKLPFQMK 636

Query: 457 VQLLRKLRELANPASTFLLEPEVKGKTRGRP-------SLKAYTSARRNPSKFEYVLSNE 509
           +++   LR+LA P +T +  P  K  T+G         S    TS  R PS +E V+ ++
Sbjct: 637 LEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWE-VVDSQ 695

Query: 510 DGKSIPAMPSSTLSLQLKKPQKEKICQSQPL---------------KPVPFITLFPSGIR 554
           +  S P+   +T S + KK  +       PL               +P+ ++T F   + 
Sbjct: 696 NPDSQPSPSPTTSSYKRKKGARLGKTSLSPLPPPTRYPKPKAIPVMRPIDYMTRF---ML 752

Query: 555 PYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQ 614
           P+I    DV  DG+CGFR +A+ +G+ E N   +R  L+ EL  H ++Y  +     RY 
Sbjct: 753 PFIEKVVDVIGDGHCGFRAIAEFMGLTEKNHLMIRTHLIQELIDHRDDYVEVFAGEDRYN 812

Query: 615 ELLHLLSNFEPNPS-------YDHWMIMPNTGYLIAFKYNVIGLLIS---MQQCLTFLPL 664
              ++L+   P  +        D W+  P+ G+++A  Y +  ++++   + +  +  PL
Sbjct: 813 ---YILNGLHPPANTKTCAHLVDKWLTFPDMGHIVANYYKMCVVVLTNLEVGKSESLFPL 869

Query: 665 RSIPGPRSSHK-IIAIGYI 682
           R  P P +    I+ IG I
Sbjct: 870 RGPPLPGNQKTLILCIGAI 888

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87241356|gb|ABD33214.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 158/603 (26%), Positives = 277/603 (45%), Gaps = 111/603 (18%)

Query: 190 LMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENM-LPSVIVIDRELALMK 248
           + ++VGVTSTDLT+SV   ++  E+E N++W L  L+ ++   M +P VIV DR+++LMK
Sbjct: 103 MFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLTMLRKLLSSKMNMPKVIVTDRDMSLMK 162

Query: 249 AIKKKFPSATTLLCRWHISRNV----LANCK---------KLFETNEIWETFISSWNLLV 295
           A+   FP +  L C +H+  NV    + NCK         K     ++ +  +++W  +V
Sbjct: 163 AVAHIFPESYALNCFFHVQANVKQRCVLNCKYPLGFKKDGKEVSNRDVVKKIMNAWKAMV 222

Query: 296 LAASEEEFAQRLKSMESDFSKYPT----ALT----------------------------- 322
            + +++ +A  L   +   S +P     A+T                             
Sbjct: 223 ESPNQQLYANALVEFKDSCSDFPIFVDYAMTTLDEVKDKIVRAWTDHVLHLGCRTTNRVE 282

Query: 323 --------YIRNS------SWTKVHTLLELQLVEIKASLERSLTMVQHDFKP-SIFKELR 367
                   Y+ NS       W K+H +L LQL  I+ S  +++ +++H FK  +++  L 
Sbjct: 283 SAHALLKKYLDNSVGDLGTCWEKIHHMLLLQLTAIQTSFGQNVCVLEHRFKDVTLYSGLG 342

Query: 368 EFVAMNALTMI-LDESRRADSLSPDVFACG-----------SPEIAEYKREGRPIPLSSL 415
             V+ NAL  I L+E R  ++L  D   CG           + EIA    + +PI L  +
Sbjct: 343 GHVSRNALDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLFQEKPILLDEI 402

Query: 416 HSHRKKLDLLQVNQDESKTLSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELANPASTFLL 475
           + H  +L + + + +++  +    E++ IV+R        K+++   LR+LA P +T + 
Sbjct: 403 YHHWLRLSMGEQSNEDAFCVEV--ELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMS 460

Query: 476 EPEVKGKTRGRP-------SLKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKK 528
            P  K  T+G         S    TS  R PS +E V+ +++  S P+   +T S + KK
Sbjct: 461 PPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWE-VVDSQNPDSQPSPSPTTSSYKRKK 519

Query: 529 PQKEKICQSQPLKP---------VPF---ITLFPSGIRPYIRGAKDVAADGNCGFRTVAD 576
             +       PL P         +P    I   P  + P+I    DV  DG+CGFR +A+
Sbjct: 520 GARLGKTSLSPLPPPTRYPKPKAIPVMRPIDYMPRFMLPFIEKVVDVIGDGHCGFRAIAE 579

Query: 577 LIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPS-------Y 629
            +G+ E N   +R  L+ EL  H ++Y  +     RY    ++L+   P  +        
Sbjct: 580 FMGLTEKNHLMIRTHLIQELMDHRDDYVEVFAGEDRYN---YILNGLHPPANTKTCAHLV 636

Query: 630 DHWMIMPNTGYLIAFKYNVIGLLIS---MQQCLTFLPLRSIPGPRSSHK-IIAIGYIYGC 685
           D W+   + G+++A  Y +  ++++   + +  +F PLR  P P +    I+ +G I   
Sbjct: 637 DKWLTFSDMGHIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPDNQKTPILCLGAIPN- 695

Query: 686 HFI 688
           HF+
Sbjct: 696 HFV 698

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
CGD|CAL0004344	568	orf19.4703 [Candida albicans (	0.169	0.205	0.272	1.8e-07
UNIPROTKB|Q5AME3	568	CaO19.4703 "Putative uncharact	0.169	0.205	0.272	1.8e-07
CGD|CAL0006339	573	orf19.4959 [Candida albicans (	0.197	0.237	0.286	3.6e-05
UNIPROTKB|Q5AL18	573	CaO19.4959 "Putative uncharact	0.197	0.237	0.286	3.6e-05

CGD|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)]

 Score = 154 (59.3 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query:   206 CCVYLESE-RENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRW 264
             C  ++ +  +E+  I  LE LK     ++ P  ++ID  ++ + AIK  FP ++  +C+W
Sbjct:    79 CAFFITNTLKEDPIISFLEFLKS---HSVTPKQVMIDCSMSELSAIKTVFPESSVSICKW 135

Query:   265 HISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYI 324
             HI RNV    + +F   E  +  ++    L   ++++E AQ++   +  F  YP  L Y 
Sbjct:   136 HILRNVRTEARSIFNDKESQDYAVAKITALFDNSTKDEIAQKIHEFKEQFKDYPKWLNYF 195

Query:   325 R 325
             +
Sbjct:   196 K 196

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 154 (59.3 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query:   206 CCVYLESE-RENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRW 264
             C  ++ +  +E+  I  LE LK     ++ P  ++ID  ++ + AIK  FP ++  +C+W
Sbjct:    79 CAFFITNTLKEDPIISFLEFLKS---HSVTPKQVMIDCSMSELSAIKTVFPESSVSICKW 135

Query:   265 HISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYI 324
             HI RNV    + +F   E  +  ++    L   ++++E AQ++   +  F  YP  L Y 
Sbjct:   136 HILRNVRTEARSIFNDKESQDYAVAKITALFDNSTKDEIAQKIHEFKEQFKDYPKWLNYF 195

Query:   325 R 325
             +
Sbjct:   196 K 196

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0006339 orf19.4959 [Candida albicans (taxid:5476)]

 Score = 133 (51.9 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 43/150 (28%), Positives = 62/150 (41%)

Query:    49 VAANGRKPRIIFTCERSGVYRDRSPQG---PKPIKA---------TGIQKCKCPFKLKGQ 96
             V A+  K  I +TCE  G YR +  +     K I           T  +K KCPF +   
Sbjct:   233 VIAHSNKKAIYYTCELGGRYRHKKNKKIDVTKQIDVGDGYMLDPDTKTKKLKCPFAMTAS 292

Query:    97 KMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLK 156
                + + W L   C  HNHP    L  H    + S E + ++++M K   KP  I   +K
Sbjct:   293 YKKSANAWTLRTTCNEHNHPQLDPLSNHPMLRKRSDELNVMILEMYKLGTKPSHIESKIK 352

Query:   157 KRDMHNATTIRAIYNARR--KCKVREQAGR 184
             +           IYN  R  K K+++Q  R
Sbjct:   353 EEYPDVLIKREDIYNEIRGYKRKLKKQNSR 382

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AL18 CaO19.4959 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 133 (51.9 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 43/150 (28%), Positives = 62/150 (41%)

Query:    49 VAANGRKPRIIFTCERSGVYRDRSPQG---PKPIKA---------TGIQKCKCPFKLKGQ 96
             V A+  K  I +TCE  G YR +  +     K I           T  +K KCPF +   
Sbjct:   233 VIAHSNKKAIYYTCELGGRYRHKKNKKIDVTKQIDVGDGYMLDPDTKTKKLKCPFAMTAS 292

Query:    97 KMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLK 156
                + + W L   C  HNHP    L  H    + S E + ++++M K   KP  I   +K
Sbjct:   293 YKKSANAWTLRTTCNEHNHPQLDPLSNHPMLRKRSDELNVMILEMYKLGTKPSHIESKIK 352

Query:   157 KRDMHNATTIRAIYNARR--KCKVREQAGR 184
             +           IYN  R  K K+++Q  R
Sbjct:   353 EEYPDVLIKREDIYNEIRGYKRKLKKQNSR 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      689       689   0.00080  121 3  11 22  0.39    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  374 KB (2184 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  65.44u 0.11s 65.55t   Elapsed:  00:00:03
  Total cpu time:  65.44u 0.11s 65.55t   Elapsed:  00:00:03
  Start:  Sat May 11 01:50:28 2013   End:  Sat May 11 01:50:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Pc21g00130 Pc21g00130 (605 aa) (Penicillium chrysogenum)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
pfam10551	88	pfam10551, MULE, MULE transposase domain	6e-20
pfam08731	90	pfam08731, AFT, Transcription factor AFT	5e-04
PLN03097	846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	0.002

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 84.4 bits (209), Expect = 6e-20
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 190 LMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKA 249
               VGV      F +    +  E E ++ W LE LK  +     P  I+ D +  L KA
Sbjct: 8   YKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP-PLTIISDGDKGLKKA 66

Query: 250 IKKKFPSATTLLCRWHISRNVL 271
           IK+ FP+A   LC WHI RN+ 
Sbjct: 67  IKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|149707 pfam08731, AFT, Transcription factor AFT

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 39  GLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQK-CKCPFKLKGQK 97
           G+ IVIE+SD        +I+F C+     R R        K     +   CPF+++   
Sbjct: 19  GIEIVIERSD------SSKIVFKCK--ASKRKRKESEDLRKKKRASSRYNSCPFRVRATY 70

Query: 98  MANNDDWALIVICGFHNHP 116
                 W ++V+   H+HP
Sbjct: 71  SLRRKKWTIVVMNNNHSHP 89

AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This family includes the paralogous pair of transcription factors AFT1 and AFT2. Length = 90

>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 207 CVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHI 266
           C  +  E    Y W ++     M     P VI+ D++ A+   I + FP+A      WHI
Sbjct: 321 CALISDESAATYSWLMQTWLRAMG-GQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHI 379

Query: 267 SRNVLANCKKLFETNEIWETFISSWNLLVLAA-SEEEFAQR 306
              V  N  ++ + +   E F++ +   +  + +EEEF +R
Sbjct: 380 LGKVSENLGQVIKQH---ENFMAKFEKCIYRSWTEEEFGKR 417

Length = 846

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.8
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	99.78
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.67
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	99.58
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.54
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.39
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.11
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.3
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	96.66
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	96.66
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	96.45
KOG3991	256	consensus Uncharacterized conserved protein [Funct	95.53
PF05412	108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	94.89
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	94.64
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	94.38
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	90.16
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	90.15
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	90.13
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	89.71
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.75
PF15299	225	ALS2CR8: Amyotrophic lateral sclerosis 2 chromosom	84.83

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=1.3e-45  Score=425.32  Aligned_cols=311  Identities=16%  Similarity=0.257  Sum_probs=225.3

Q ss_pred             ccccCcceecccccCChhhHHHHHHHHHhhcCeEEEEeecccCC-CCCccEEEEEEecCCcCCCCCCC--C---------
Q 037162            8 TEESGKEKVVNVALMEREDMPREELQTELRNGLVIVIEKSDVAA-NGRKPRIIFTCERSGVYRDRSPQ--G---------   75 (689)
Q Consensus         8 ~~~~~~~~~~~~~F~S~eea~~~~~~yA~~~GF~v~i~rS~~~~-~g~~~~~~~~C~r~G~~r~~~~~--~---------   75 (689)
                      .+..+.+|.+||+|+|.|||++||+.||+..||+|||.+|++.+ +|.+..+.|+|+|+|..+...+.  .         
T Consensus        67 ~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~  146 (846)
T PLN03097         67 KEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQD  146 (846)
T ss_pred             cCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccC
Confidence            45566789999999999999999999999999999998887764 56788999999999964321110  0         


Q ss_pred             -CCCCCcCCceeeCCceEEEEEEeecCCCeEEEEEeCcccCCCCcccccccccccCCHHHHHHHH---------------
Q 037162           76 -PKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPATQYLEGHSFAGRLSKEESNLLV---------------  139 (689)
Q Consensus        76 -~~~rr~~~s~ktgCpa~i~~~~~~~~~~W~V~~~~~~HNH~l~~~~~~h~~~RrLs~e~k~~I~---------------  139 (689)
                       ...+++++.+||||+|+|+++.. .+|+|.|+.+..+|||++.++.......|++-......+.               
T Consensus       147 ~~~~~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~~~~~~~~v~~~~~d~~~~  225 (846)
T PLN03097        147 PENGTGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSS  225 (846)
T ss_pred             cccccccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHhhhhccccccccchhhcch
Confidence             00112355789999999999885 4579999999999999999764322111222111111000               


Q ss_pred             --HhhhCCC---ChHHHHHH---HHhcCCCccc--------hhhHHHHHHHHhHHhhh-cc------------hhHHHHH
Q 037162          140 --DMSKNNV---KPKDILHV---LKKRDMHNAT--------TIRAIYNARRKCKVREQ-AG------------RSQMQLL  190 (689)
Q Consensus       140 --~L~~sgv---~pr~Il~~---L~~~~g~~~~--------t~kDIyN~~~k~r~~~l-~g------------~t~~~~L  190 (689)
                        ......+   -...++.+   ++..+|+.++        .++.|+++..+.+.... -|            .+. .+|
T Consensus       226 ~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~-~Pf  304 (846)
T PLN03097        226 FDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYK-MPL  304 (846)
T ss_pred             hhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccC-cEE
Confidence              0000001   11222222   2233443322        23344555444444321 11            111 268


Q ss_pred             hhhcccCCCCceeEEEEEEecCCccchHHHHHHHHHHHHhcCCCCeEEEechhHHHHHHHHhhCcccccccccchHHHHH
Q 037162          191 MKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNV  270 (689)
Q Consensus       191 l~~vGvd~~~~~~~~gf~~~~~E~~e~~~w~l~~lk~~~~~~~~P~viiTD~~~al~~Ai~~vFP~a~~~lC~wHi~kNv  270 (689)
                      +.|||||+|++++++||||+.+|+.|+|.|+|++|+.+|+ ++.|++||||+|.||.+||++|||++.|++|.|||++|+
T Consensus       305 a~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~-gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~  383 (846)
T PLN03097        305 ALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMG-GQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKV  383 (846)
T ss_pred             EEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhC-CCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHH
Confidence            8999999999999999999999999999999999999995 799999999999999999999999999999999999999


Q ss_pred             HHHhhhhccchhhHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhhc-CChhHHhhh
Q 037162          271 LANCKKLFETNEIWETFISSWNL-LVLAASEEEFAQRLKSMESDFS-KYPTALTYI  324 (689)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~w~~-l~~a~t~~ef~~~~~~l~~~~~-~~p~~~~Yl  324 (689)
                      .++++..+...   +.|...|.. |..+.|+++|+..|..|.++|. .-.+++..|
T Consensus       384 ~e~L~~~~~~~---~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~L  436 (846)
T PLN03097        384 SENLGQVIKQH---ENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSL  436 (846)
T ss_pred             HHHhhHHhhhh---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            99999877643   467777765 4568999999999999999996 334444444

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.80  E-value=5.8e-21  Score=208.03  Aligned_cols=232  Identities=21%  Similarity=0.277  Sum_probs=190.5

Q ss_pred             cccccCCHHHHHHHHHhhhCCCChHHHHHHHHhcCCCc-c--chh----hHHHHHHHHhHHhhhcch-hHH---------
Q 037162          125 SFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHN-A--TTI----RAIYNARRKCKVREQAGR-SQM---------  187 (689)
Q Consensus       125 ~~~RrLs~e~k~~I~~L~~sgv~pr~Il~~L~~~~g~~-~--~t~----kDIyN~~~k~r~~~l~g~-t~~---------  187 (689)
                      +.+++.+++....|..|+..|+++++|...|+..+|.. +  .++    +.+......|+.+.+++. +++         
T Consensus        94 ~~y~r~~~~l~~~i~~ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~~w~~R~L~~~~y~~l~iD~~~~k  173 (381)
T PF00872_consen   94 PKYQRREDSLEELIISLYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVEAWRNRPLESEPYPYLWIDGTYFK  173 (381)
T ss_pred             chhhhhhhhhhhhhhhhhccccccccccchhhhhhcccccCchhhhhhhhhhhhhHHHHhhhccccccccceeeeeeecc
Confidence            34455577778888999999999999999999999832 2  222    334445677777777665 442         


Q ss_pred             ---------HHHhhhcccCCCCceeEEEEEEecCCccchHHHHHHHHHHHHhcCCCCeEEEechhHHHHHHHHhhCcccc
Q 037162          188 ---------QLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSAT  258 (689)
Q Consensus       188 ---------~~Ll~~vGvd~~~~~~~~gf~~~~~E~~e~~~w~l~~lk~~~~~~~~P~viiTD~~~al~~Ai~~vFP~a~  258 (689)
                               .+++.++|||.+|+..++|+.....|+.++|.-+|+.|++.  |...|.+||+|..+||..||+++||++.
T Consensus       174 vr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~R--Gl~~~~lvv~Dg~~gl~~ai~~~fp~a~  251 (381)
T PF00872_consen  174 VREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKER--GLKDILLVVSDGHKGLKEAIREVFPGAK  251 (381)
T ss_pred             cccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhc--cccccceeeccccccccccccccccchh
Confidence                     25789999999999999999999999999999999999886  7888999999999999999999999999


Q ss_pred             cccccchHHHHHHHHhhhhccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc-CChhHHhhhhhcchhhhhhHHH
Q 037162          259 TLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFS-KYPTALTYIRNSSWTKVHTLLE  337 (689)
Q Consensus       259 ~~lC~wHi~kNv~~~~~~~~~~~~~~~~~~~~w~~l~~a~t~~ef~~~~~~l~~~~~-~~p~~~~Yl~~~~W~~i~~~~e  337 (689)
                      +|+|++|+.+|+.+++++     .+.+++..+++.|+.+.+.+++.+.++.|.++|. +||++++++++ .|+.+     
T Consensus       252 ~QrC~vH~~RNv~~~v~~-----k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~-~~~~~-----  320 (381)
T PF00872_consen  252 WQRCVVHLMRNVLRKVPK-----KDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEE-NWDEL-----  320 (381)
T ss_pred             hhhheechhhhhcccccc-----ccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhh-ccccc-----
Confidence            999999999999999876     3446889999999999999999999999999997 99999999996 66432     


Q ss_pred             hhHHHHHHHHHhhheeeeccccchhhhhhhhhhcHHHHHHHHHHHHHhcc
Q 037162          338 LQLVEIKASLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADS  387 (689)
Q Consensus       338 ~qh~~Ik~s~~~s~~~v~~~~~~~l~~~l~g~iS~~AL~~i~~q~~r~~~  387 (689)
                                   .+..  .|++.++..+.   |+|+|+.++.+++++.+
T Consensus       321 -------------~tf~--~fP~~~~~~i~---TTN~iEsln~~irrr~~  352 (381)
T PF00872_consen  321 -------------LTFL--DFPPEHRRSIR---TTNAIESLNKEIRRRTK  352 (381)
T ss_pred             -------------ccee--eecchhccccc---hhhhccccccchhhhcc
Confidence                         2222  25555555555   88888888888888643

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=99.78  E-value=3.4e-19  Score=154.59  Aligned_cols=90  Identities=21%  Similarity=0.382  Sum_probs=79.4

Q ss_pred             HHHHHHHhhcCeEEEEeecccC-CCCCccEEEEEEecCCcCCCCCCCCCCCCCcCCceeeCCceEEEEEEeecCCCeEEE
Q 037162           29 REELQTELRNGLVIVIEKSDVA-ANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALI  107 (689)
Q Consensus        29 ~~~~~yA~~~GF~v~i~rS~~~-~~g~~~~~~~~C~r~G~~r~~~~~~~~~rr~~~s~ktgCpa~i~~~~~~~~~~W~V~  107 (689)
                      +||+.||..+||+|++.+|.+. .+|.+.++.|+|+++|.++.........++++.|.||||||+|.++... ++.|.|.
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            5999999999999999998876 5788999999999999877655432456788999999999999999987 8899999


Q ss_pred             EEeCcccCCCCc
Q 037162          108 VICGFHNHPATQ  119 (689)
Q Consensus       108 ~~~~~HNH~l~~  119 (689)
                      .+..+|||+|.|
T Consensus        80 ~~~~~HNH~L~P   91 (91)
T PF03101_consen   80 SFVLEHNHPLCP   91 (91)
T ss_pred             ECcCCcCCCCCC
Confidence            999999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.67  E-value=7.2e-17  Score=140.49  Aligned_cols=78  Identities=41%  Similarity=0.669  Sum_probs=74.2

Q ss_pred             hhcccCCCCceeEEEEEEecCCccchHHHHHHHHHHHHhcCCCCeEEEechhHHHHHHHHhhCcccccccccchHHHHHH
Q 037162          192 KIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVL  271 (689)
Q Consensus       192 ~~vGvd~~~~~~~~gf~~~~~E~~e~~~w~l~~lk~~~~~~~~P~viiTD~~~al~~Ai~~vFP~a~~~lC~wHi~kNv~  271 (689)
                      .++|+|++|+.+++||+++.+|+.++|.|+|+.+++.+.. . |.+||||++.|+++||+++||++.|++|.||+.||++
T Consensus        16 ~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-~-p~~ii~D~~~~~~~Ai~~vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   16 IAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-K-PKVIISDFDKALINAIKEVFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             eEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-C-ceeeeccccHHHHHHHHHHCCCceEehhHHHHHHhhC
Confidence            4899999999999999999999999999999999999853 5 9999999999999999999999999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=99.58  E-value=1.3e-14  Score=125.64  Aligned_cols=91  Identities=30%  Similarity=0.578  Sum_probs=79.6

Q ss_pred             cCChhhHHHHHHHHHhhcCeEEEEeecccCCCCCccEEEEEEecCCcCCCCCCC--------------------CCCCCC
Q 037162           21 LMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQ--------------------GPKPIK   80 (689)
Q Consensus        21 F~S~eea~~~~~~yA~~~GF~v~i~rS~~~~~g~~~~~~~~C~r~G~~r~~~~~--------------------~~~~rr   80 (689)
                      |.+.+|...|++.+++.+||+|+|.||+.      ..++|.|--+|.++.....                    ...+.+
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~------~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k   74 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDK------KKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKK   74 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCC------ceEEEEEecCCCcccccccccccccccccccccccccccccccCC
Confidence            89999999999999999999999999995      4799999999987764331                    123346


Q ss_pred             cCCceeeCCceEEEEEEeecCCCeEEEEEeCcccCCC
Q 037162           81 ATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPA  117 (689)
Q Consensus        81 ~~~s~ktgCpa~i~~~~~~~~~~W~V~~~~~~HNH~l  117 (689)
                      .+.+++++|||+|++......+.|.|.++++.|||++
T Consensus        75 ~t~srk~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   75 RTKSRKNTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cccccccCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            6889999999999999999999999999999999996

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.54  E-value=5.4e-15  Score=135.21  Aligned_cols=107  Identities=25%  Similarity=0.323  Sum_probs=84.9

Q ss_pred             cCCCCcchHHHHHHhc----CCCccHHHHHHHHHHHHH-hhhhhhhhhccCchhHHHHHhhhcCCCCCCcccccccccch
Q 037162          564 AADGNCGFRTVADLIG----IGEDNWARVRRDLVDELQ-CHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNT  638 (689)
Q Consensus       564 ~~dg~Cgfraia~~l~----~~~~~~~~vr~~l~~el~-~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~Wl~~~~~  638 (689)
                      +|||||+|||||.+|+    .+++.|..||+.++++|+ .+++.|...+.++        .+      .....|.+.+++
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~--------~~------~~~~~Wg~~~el   66 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD--------KM------SKPGTWGGEIEL   66 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH--------HH------TSTTSHEEHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh--------hh------ccccccCcHHHH
Confidence            5999999999999999    999999999999999999 9999988876433        34      457799999988


Q ss_pred             hhhhccccceeEEEEccCc--eeeccCCCC--CCCCCCCCCcEEEEEec-----CCCc
Q 037162          639 GYLIAFKYNVIGLLISMQQ--CLTFLPLRS--IPGPRSSHKIIAIGYIY-----GCHF  687 (689)
Q Consensus       639 g~~iA~~y~~pv~~~s~~~--s~t~~P~~~--~p~~~~~~~~i~l~~~~-----~nHf  687 (689)
                       +++|+.|+|+|++|+...  ...+.+..+  +|..  ..++|+|+|..     +|||
T Consensus        67 -~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   67 -QALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLE--SPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             -HHHHHHHTSEEEEECETTTBEEEEEEESCEESTTT--TTTSEEEEEETEEEEETTEE
T ss_pred             -HHHHHHhCCeEEEEEcCCCCccceeeecCccccCC--CCCeEEEEEcCCccCCCCCC
Confidence             599999999999987532  233333322  2222  25789999998     8998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.39  E-value=4.6e-12  Score=135.94  Aligned_cols=227  Identities=20%  Similarity=0.215  Sum_probs=177.0

Q ss_pred             ccCCHHHHHHHHHhhhCCCChHHHHHHHHhcCCCcc------chhhHHHHHHHHhHHhhhcchhH---------------
Q 037162          128 GRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNA------TTIRAIYNARRKCKVREQAGRSQ---------------  186 (689)
Q Consensus       128 RrLs~e~k~~I~~L~~sgv~pr~Il~~L~~~~g~~~------~t~kDIyN~~~k~r~~~l~g~t~---------------  186 (689)
                      ++........|..|...|+++++|-..++..++..+      ...+.+.+.+..+..+.+ |+++               
T Consensus        83 ~r~~~~~~~~v~~~y~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~v~~~~~r~l-~~~~~v~~D~~~~k~r~v~  161 (379)
T COG3328          83 QRRERALDLPVLSMYAKGVTTREIEALLEELYGHKVSPSVISVVTDRLDEKVKAWQNRPL-GDYPYVYLDAKYVKVRSVR  161 (379)
T ss_pred             HhhhhhHHHHHHHHHHcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHHHHHHHhccc-cCceEEEEecceeehhhhh
Confidence            344455566788899999999999999999876421      123455566777887777 4332               


Q ss_pred             HHHHhhhcccCCCCceeEEEEEEecCCccchHHHHHHHHHHHHhcCCCCeEEEechhHHHHHHHHhhCcccccccccchH
Q 037162          187 MQLLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHI  266 (689)
Q Consensus       187 ~~~Ll~~vGvd~~~~~~~~gf~~~~~E~~e~~~w~l~~lk~~~~~~~~P~viiTD~~~al~~Ai~~vFP~a~~~lC~wHi  266 (689)
                      -++++.++||+.+|+..++|+..-..|+ ..|.-+|..|+..  |......+|+|...++-+||..+||.+.+|+|..|+
T Consensus       162 ~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r--gl~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~  238 (379)
T COG3328         162 NKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR--GLSDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHL  238 (379)
T ss_pred             hheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc--cccceeEEecchhhhhHHHHHHhccHhhhhhhhhHH
Confidence            1356789999999999999999999998 7888677777765  677788888999999999999999999999999999


Q ss_pred             HHHHHHHhhhhccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc-CChhHHhhhhhcchhhhhhHHHhhHHHHHH
Q 037162          267 SRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFS-KYPTALTYIRNSSWTKVHTLLELQLVEIKA  345 (689)
Q Consensus       267 ~kNv~~~~~~~~~~~~~~~~~~~~w~~l~~a~t~~ef~~~~~~l~~~~~-~~p~~~~Yl~~~~W~~i~~~~e~qh~~Ik~  345 (689)
                      .+|+.++.+.     .+.+.+....+.|+.+++.++....|..+.+.|. .||+++..+.+ .|..+....         
T Consensus       239 ~Rnll~~v~~-----k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~-~~~~~~~F~---------  303 (379)
T COG3328         239 VRNLLDKVPR-----KDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRN-ALEELLPFF---------  303 (379)
T ss_pred             Hhhhhhhhhh-----hhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHH-HHHHhcccc---------
Confidence            9999999887     4456788889999999999999999999999997 89999999886 554322110         


Q ss_pred             HHHhhheeeeccccchhhhhhhhhhcHHHHHHHHHHHHHhcc
Q 037162          346 SLERSLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADS  387 (689)
Q Consensus       346 s~~~s~~~v~~~~~~~l~~~l~g~iS~~AL~~i~~q~~r~~~  387 (689)
                                 .|+.....-+.   |++||+.++.+++++.+
T Consensus       304 -----------~fp~~~r~~i~---ttN~IE~~n~~ir~~~~  331 (379)
T COG3328         304 -----------AFPSEIRKIIY---TTNAIESLNKLIRRRTK  331 (379)
T ss_pred             -----------cCcHHHHhHhh---cchHHHHHHHHHHHHHh
Confidence                       12222221222   89999999999887654

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=8.7e-11  Score=118.14  Aligned_cols=124  Identities=11%  Similarity=0.096  Sum_probs=105.9

Q ss_pred             cccccccccccccccccCCCCcchHHHHHHhcCCC---ccHHHHHHHHHHHHHhhhhhhhhhcc--------CchhHHHH
Q 037162          548 LFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGE---DNWARVRRDLVDELQCHYNEYTLLLG--------YAGRYQEL  616 (689)
Q Consensus       548 ~~~~~~~~~i~~i~~v~~dg~Cgfraia~~l~~~~---~~~~~vr~~l~~el~~~~~~y~~~~~--------~~~~~~~~  616 (689)
                      .+...+.+-...++|+++||||.|+||+.+|-+..   -+-..+|+...+++..|.+++.+++-        +..+|+.+
T Consensus       149 k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Y  228 (302)
T KOG2606|consen  149 KLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKY  228 (302)
T ss_pred             HHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHH
Confidence            46667788888999999999999999999998863   56789999999999999999998763        34579999


Q ss_pred             HhhhcCCCCCCcccccccccchhhhhccccceeEEEEccCceeeccCCCCCCCCCCCCCcEEEEEec
Q 037162          617 LHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIY  683 (689)
Q Consensus       617 ~~~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t~~P~~~~p~~~~~~~~i~l~~~~  683 (689)
                      ++.+      +.+..|++-++.+ +|++.+.+||.+|..+++    |+..++...+ .+||+|+|..
T Consensus       229 c~eI------~~t~~WGgelEL~-AlShvL~~PI~Vy~~~~p----~~~~geey~k-d~pL~lvY~r  283 (302)
T KOG2606|consen  229 CREI------RNTAAWGGELELK-ALSHVLQVPIEVYQADGP----ILEYGEEYGK-DKPLILVYHR  283 (302)
T ss_pred             HHHh------hhhccccchHHHH-HHHHhhccCeEEeecCCC----ceeechhhCC-CCCeeeehHH
Confidence            9999      5679999999997 999999999999998766    6666776553 4899999874

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=98.30  E-value=2e-06  Score=69.92  Aligned_cols=63  Identities=21%  Similarity=0.458  Sum_probs=55.7

Q ss_pred             ecccccCChhhHHHHHHHHHhhcCeEEEEeecccCCCCCccEEEEEEecCCcCCCCCCCCCCCCCcCCceeeCCceEEEE
Q 037162           16 VVNVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKG   95 (689)
Q Consensus        16 ~~~~~F~S~eea~~~~~~yA~~~GF~v~i~rS~~~~~g~~~~~~~~C~r~G~~r~~~~~~~~~rr~~~s~ktgCpa~i~~   95 (689)
                      -+|+.|+|.+|+..++..||..+||.+++.+|+.      .++..+|.  +                    .||||+|++
T Consensus         5 ~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~------~r~~~~C~--~--------------------~~C~Wrv~a   56 (67)
T PF03108_consen    5 EVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDK------KRYRAKCK--D--------------------KGCPWRVRA   56 (67)
T ss_pred             ccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCC------EEEEEEEc--C--------------------CCCCEEEEE
Confidence            3689999999999999999999999999999984      58999996  1                    169999999


Q ss_pred             EEeecCCCeEE
Q 037162           96 QKMANNDDWAL  106 (689)
Q Consensus        96 ~~~~~~~~W~V  106 (689)
                      ...+..+.|.|
T Consensus        57 s~~~~~~~~~I   67 (67)
T PF03108_consen   57 SKRKRSDTFQI   67 (67)
T ss_pred             EEcCCCCEEEC
Confidence            99998888875

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0051  Score=61.19  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             cccccCCCCcchHHHHHHhcCCCccH-HHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccccccccch
Q 037162          560 AKDVAADGNCGFRTVADLIGIGEDNW-ARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMPNT  638 (689)
Q Consensus       560 i~~v~~dg~Cgfraia~~l~~~~~~~-~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~Wl~~~~~  638 (689)
                      ..=|+.|--|.|+||+--+......- .++|+-+.+|+-++++.|..-+-|... ++++.=+      -.++.|.+-.+.
T Consensus       112 ~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n-~eYc~WI------~k~dsWGGaIEl  184 (307)
T KOG3288|consen  112 RRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPN-KEYCAWI------LKMDSWGGAIEL  184 (307)
T ss_pred             EEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCc-HHHHHHH------ccccccCceEEe
Confidence            34478899999999987776543222 589999999999999999864322211 2333333      246889998888


Q ss_pred             hhhhccccceeEEEEccCceeeccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          639 GYLIAFKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       639 g~~iA~~y~~pv~~~s~~~s~t~~P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      + ||++.|++-|++++.+..-.  -.+ ++..+- ..-++|.|. |-||
T Consensus       185 s-ILS~~ygveI~vvDiqt~ri--d~f-ged~~~-~~rv~llyd-GIHY  227 (307)
T KOG3288|consen  185 S-ILSDYYGVEICVVDIQTVRI--DRF-GEDKNF-DNRVLLLYD-GIHY  227 (307)
T ss_pred             e-eehhhhceeEEEEecceeee--hhc-CCCCCC-CceEEEEec-cccc
Confidence            8 99999999999998643211  112 221111 234777777 7887

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.66  E-value=0.0025  Score=65.67  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             ccccccccccccccCCCCcchHHHHHH
Q 037162          551 SGIRPYIRGAKDVAADGNCGFRTVADL  577 (689)
Q Consensus       551 ~~~~~~i~~i~~v~~dg~Cgfraia~~  577 (689)
                      +.|......+..|.|||||+|||++-+
T Consensus        34 ~~L~~~y~~~R~vRGDGNCFYRAf~F~   60 (244)
T PF10275_consen   34 KKLSQKYSGIRRVRGDGNCFYRAFGFS   60 (244)
T ss_dssp             HHHHHHEEEEE-B-SSSTHHHHHHHHH
T ss_pred             HHHHhhhhheEeecCCccHHHHHHHHH
Confidence            344445677888999999999999865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.0015  Score=70.23  Aligned_cols=123  Identities=17%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             ccccccccccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCccccc
Q 037162          553 IRPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHW  632 (689)
Q Consensus       553 ~~~~i~~i~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~W  632 (689)
                      +..|+..+.-|.+||+|.||++|+++.++.|-|..||++..++++..++.|.....  ..|..+++.-      .-.+-|
T Consensus       213 ~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt--~~~~~y~k~k------r~~~~~  284 (371)
T KOG2605|consen  213 KKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVT--EDFTSYIKRK------RADGEP  284 (371)
T ss_pred             HHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccc--cchhhccccc------ccCCCC
Confidence            36678888999999999999999999999999999999999999998888776542  2345544444      334677


Q ss_pred             ccccchhhhhc---cccceeEEEEccCceeeccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          633 MIMPNTGYLIA---FKYNVIGLLISMQQCLTFLPLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       633 l~~~~~g~~iA---~~y~~pv~~~s~~~s~t~~P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      ++-..+. .+|   --+.+|++..+.+  .|-+-...++...+ ..-+++.++...||
T Consensus       285 gnhie~Q-a~a~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~n~~~~~h~  338 (371)
T KOG2605|consen  285 GNHIEQQ-AAADIYEEIEKPLNITSFK--DTCYIQTPPAIEES-VKMEKYNFWVEVHY  338 (371)
T ss_pred             cchHHHh-hhhhhhhhccccceeeccc--ccceeccCcccccc-hhhhhhcccchhhh
Confidence            7776664 666   4555666666532  11111222222111 33466666555665

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.051  Score=53.62  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=16.7

Q ss_pred             ccccccCCCCcchHHHHHHh
Q 037162          559 GAKDVAADGNCGFRTVADLI  578 (689)
Q Consensus       559 ~i~~v~~dg~Cgfraia~~l  578 (689)
                      .|....|||||.|||+|.++
T Consensus        65 ~iR~trgDGNCfyra~~~s~   84 (256)
T KOG3991|consen   65 VIRKTRGDGNCFYRAFAYSY   84 (256)
T ss_pred             hhheecCCCceehHHHHHHH
Confidence            46778999999999998654

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.89  E-value=0.043  Score=47.58  Aligned_cols=32  Identities=16%  Similarity=0.034  Sum_probs=22.5

Q ss_pred             CCCcccccccccchhhhhccccceeEEEEccCc
Q 037162          625 PNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQ  657 (689)
Q Consensus       625 ~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~  657 (689)
                      .+.+.+.|++--+++++|-.. +-|+-+--++.
T Consensus        34 ~~r~~d~W~~dedl~~~iq~l-~lPat~~~~~~   65 (108)
T PF05412_consen   34 RNRPSDDWADDEDLYQVIQSL-RLPATLDRNGA   65 (108)
T ss_pred             cCCChHHccChHHHHHHHHHc-cCceeccCCCC
Confidence            345789999999999988755 66655544333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=94.64  E-value=0.15  Score=40.37  Aligned_cols=56  Identities=25%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             CeEEEEeecccCCCCCccEEEEEEecCCcCCCCCCCCCCCCCcCCceeeCCceEEEEEEeecCCCeEEEEEeCcccCC
Q 037162           39 GLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHP  116 (689)
Q Consensus        39 GF~v~i~rS~~~~~g~~~~~~~~C~r~G~~r~~~~~~~~~rr~~~s~ktgCpa~i~~~~~~~~~~W~V~~~~~~HNH~  116 (689)
                      ||..|+--.+..++....|.+|.|+..                      ||||+=.+.+..+++.-.++.+.++|||+
T Consensus         4 gy~WRKYGqK~i~g~~~pRsYYrCt~~----------------------~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    4 GYRWRKYGQKNIKGSPYPRSYYRCTHP----------------------GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             SS-EEEEEEEEETTTTCEEEEEEEECT----------------------TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCchhhccCcccCCCceeeEeeecccc----------------------ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            677765333333333456788999631                      79999999988777888889999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=94.38  E-value=1.2  Score=50.34  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=119.5

Q ss_pred             cccccccCCHHHHHHHHHhhhCCCChHHHHHHHHhcCCCccchhhHHHHHHHHhHHhhh-----------------cch-
Q 037162          123 GHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKCKVREQ-----------------AGR-  184 (689)
Q Consensus       123 ~h~~~RrLs~e~k~~I~~L~~sgv~pr~Il~~L~~~~g~~~~t~kDIyN~~~k~r~~~l-----------------~g~-  184 (689)
                      +...+.|+|++.+..|..+... ++-++..+.|....+....+...|.|.+...-....                 ||. 
T Consensus       111 Gl~~~~R~S~~~~~~i~~~a~~-~sYr~aa~~l~~~~~~~~iS~~tV~~~v~~~g~~~~~~~~~~k~~~~~LyIEaDg~~  189 (470)
T PF06782_consen  111 GLKKYQRISPELKEKIVELATE-MSYRKAAEILEELLGNVSISKQTVWNIVKEAGFEEIKEEEKEKKKVPVLYIEADGVH  189 (470)
T ss_pred             CCCcccchhHHHHHHHHHHHhh-cCHHHHHHHHhhccCCCccCHHHHHHHHHhccchhhhccccccCCCCeEEEecCcce
Confidence            4455689999999888887644 888999999987777666777788887655532110                 110 


Q ss_pred             hHHH----------HHhhhcc---cCCC-CceeEEEE-EEec---CCccchHHHHHHHHHHHHhcCCC-CeEEEechhHH
Q 037162          185 SQMQ----------LLMKIVG---VTST-DLTFSVCC-VYLE---SERENNYIWALERLKGVMEENML-PSVIVIDRELA  245 (689)
Q Consensus       185 t~~~----------~Ll~~vG---vd~~-~~~~~~gf-~~~~---~E~~e~~~w~l~~lk~~~~~~~~-P~viiTD~~~a  245 (689)
                      -+.|          .++.-.|   .... ++...+.- .|+.   ....+-|.-+.+.+-..+.-... --++.+|....
T Consensus       190 v~~qg~~~~~~e~k~~~vheG~~~~~~~~~R~~L~n~~~f~~~~~~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~W  269 (470)
T PF06782_consen  190 VKLQGKKKKKKEVKLFVVHEGWEKEKPGGKRNKLKNKRHFVSGVGESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASW  269 (470)
T ss_pred             ecccccccccceeeEEEEEeeeeeeeccCCcceeecchheecccccchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHH
Confidence            0011          1122244   2222 22222222 3333   33345566666766666631222 24667888888


Q ss_pred             HHHHHHhhCcccccccccchHHHHHHHHhhhhccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc------CChh
Q 037162          246 LMKAIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLKSMESDFS------KYPT  319 (689)
Q Consensus       246 l~~Ai~~vFP~a~~~lC~wHi~kNv~~~~~~~~~~~~~~~~~~~~w~~l~~a~t~~ef~~~~~~l~~~~~------~~p~  319 (689)
                      +.+++. .||++.+.|..||+++.+...++..-   +   .-...|+.| ...+...++..++.+...-.      ....
T Consensus       270 Ik~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~---~---~~~~~~~al-~~~d~~~l~~~L~~~~~~~~~~~~~~~i~~  341 (470)
T PF06782_consen  270 IKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDP---E---LKEKIRKAL-KKGDKKKLETVLDTAESCAKDEEERKKIRK  341 (470)
T ss_pred             HHHHHH-hhcCceEEecHHHHHHHHHHHhhhCh---H---HHHHHHHHH-HhcCHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence            887766 99999999999999999998776421   1   111233333 34455666666665554332      1235


Q ss_pred             HHhhhhhcchhhhh
Q 037162          320 ALTYIRNSSWTKVH  333 (689)
Q Consensus       320 ~~~Yl~~~~W~~i~  333 (689)
                      +..||.+ +|..++
T Consensus       342 ~~~Yl~~-n~~~i~  354 (470)
T PF06782_consen  342 LRKYLLN-NWDGIK  354 (470)
T ss_pred             HHHHHHH-CHHHhh
Confidence            6788885 887663

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=90.16  E-value=2  Score=47.02  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             ccccCChhhHHHHHHHHHhhcCeEEEEeecccCCCCCccEEEEEEec
Q 037162           18 NVALMEREDMPREELQTELRNGLVIVIEKSDVAANGRKPRIIFTCER   64 (689)
Q Consensus        18 ~~~F~S~eea~~~~~~yA~~~GF~v~i~rS~~~~~g~~~~~~~~C~r   64 (689)
                      +..|+|.|+-|..++.|....-.-|+.+.|-+     .+.++|.|.+
T Consensus        25 ~~~f~tl~~wy~v~ndyefq~rcpiilknsh~-----nkhftfachl   66 (496)
T PF04684_consen   25 ARKFPTLEAWYNVINDYEFQSRCPIILKNSHR-----NKHFTFACHL   66 (496)
T ss_pred             ccCCCcHHHHHHHHhhhhhhhcCceeeccccc-----ccceEEEeec
Confidence            46899999999999999998888888777654     3578898864

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=0.14  Score=52.43  Aligned_cols=110  Identities=11%  Similarity=-0.097  Sum_probs=63.2

Q ss_pred             CCCCCCccccccccccccccccccccCCCCcchHHHHHHhcCCCc--c---HHHHHHHHHHHHHhhhhhhhhh-c----c
Q 037162          539 PLKPVPFITLFPSGIRPYIRGAKDVAADGNCGFRTVADLIGIGED--N---WARVRRDLVDELQCHYNEYTLL-L----G  608 (689)
Q Consensus       539 ~~~~~p~~~~~~~~~~~~i~~i~~v~~dg~Cgfraia~~l~~~~~--~---~~~vr~~l~~el~~~~~~y~~~-~----~  608 (689)
                      |..-.|++-.+|....---..-+|..|||||.|.+|+++|++.-.  +   =...|..=......+...|..+ |    +
T Consensus       152 PDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~  231 (306)
T COG5539         152 PDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETL  231 (306)
T ss_pred             ccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhh
Confidence            333344444444433332233367789999999999999998411  0   0111111112222233334432 1    1


Q ss_pred             CchhHHHHHhhhcCCCCCCcccccccccchhhhhccccceeEEEEcc
Q 037162          609 YAGRYQELLHLLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISM  655 (689)
Q Consensus       609 ~~~~~~~~~~~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~  655 (689)
                      ....|+.+.+.+      -..+.|...+... .||+.+..|+-++..
T Consensus       232 ~m~~~dt~~ne~------~~~a~~g~~~ei~-qLas~lk~~~~~~nT  271 (306)
T COG5539         232 AMVLWDTYVNEV------LFDASDGITIEIQ-QLASLLKNPHYYTNT  271 (306)
T ss_pred             hcchHHHHHhhh------cccccccchHHHH-HHHHHhcCceEEeec
Confidence            124567777776      4467898666654 799999999988864

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=90.13  E-value=0.2  Score=51.53  Aligned_cols=67  Identities=19%  Similarity=0.196  Sum_probs=53.0

Q ss_pred             EEecCCccchHHHHHHHH-HHHHhcCCCCeEEEechhHHHHHHHHhhCcccccccccchHHHHHHHHhhh
Q 037162          208 VYLESERENNYIWALERL-KGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKK  276 (689)
Q Consensus       208 ~~~~~E~~e~~~w~l~~l-k~~~~~~~~P~viiTD~~~al~~Ai~~vFP~a~~~lC~wHi~kNv~~~~~~  276 (689)
                      .++.+-+.+++.-+|..+ -..  ....+++|++|...+...|+++.||+|....-.|||++++-+.+..
T Consensus        31 ~i~~~r~~~~l~~~~~~~~~~~--~~~~v~~V~~Dm~~~y~~~~~~~~P~A~iv~DrFHvvk~~~~al~~   98 (249)
T PF01610_consen   31 DILPGRDKETLKDFFRSLYPEE--ERKNVKVVSMDMSPPYRSAIREYFPNAQIVADRFHVVKLANRALDK   98 (249)
T ss_pred             EEcCCccHHHHHHHHHHhCccc--cccceEEEEcCCCccccccccccccccccccccchhhhhhhhcchh
Confidence            356666777766555544 222  2467899999999999999999999999999999999999886554

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>smart00774 WRKY DNA binding domain

Probab=89.71  E-value=0.67  Score=36.43  Aligned_cols=28  Identities=25%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             CCceEEEEEEeecCCCeEEEEEeCcccC
Q 037162           88 KCPFKLKGQKMANNDDWALIVICGFHNH  115 (689)
Q Consensus        88 gCpa~i~~~~~~~~~~W~V~~~~~~HNH  115 (689)
                      ||||+=.+.+..+++.-.+..+.++|||
T Consensus        32 ~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       32 GCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            7998877777766677888889999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.75  E-value=1.6  Score=33.95  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=11.4

Q ss_pred             eCCceEEEEEEeecCCCeEEEEEeCcccC
Q 037162           87 CKCPFKLKGQKMANNDDWALIVICGFHNH  115 (689)
Q Consensus        87 tgCpa~i~~~~~~~~~~W~V~~~~~~HNH  115 (689)
                      .+|+|+|...    .+.-.+.....+|||
T Consensus        38 ~~C~a~~~~~----~~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   38 HGCRARLITD----AGDGRVVRTNGEHNH   62 (62)
T ss_dssp             S----EEEEE------TTEEEE-S---SS
T ss_pred             CCCeEEEEEE----CCCCEEEECCCccCC
Confidence            5899999998    234566667789999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

Probab=84.83  E-value=4.9  Score=40.82  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             CCCcCCceeeCCceEEEEEEeec-----------------------------------CCCeEEEE-E--eCcc-cCCCC
Q 037162           78 PIKATGIQKCKCPFKLKGQKMAN-----------------------------------NDDWALIV-I--CGFH-NHPAT  118 (689)
Q Consensus        78 ~rr~~~s~ktgCpa~i~~~~~~~-----------------------------------~~~W~V~~-~--~~~H-NH~l~  118 (689)
                      .++...|.|.||||+|+++....                                   .+.+.+.+ +  ..+| +|+..
T Consensus        69 ~~~~~~skK~~CPA~I~Ik~I~~FPdykv~~~~~~~~~~~r~~~~~~lk~~l~~~~~~~~~~r~yv~lP~~~~H~~H~~~  148 (225)
T PF15299_consen   69 RRRSKPSKKRDCPARIYIKEIIKFPDYKVPTNSQKDTRRERRKASKKLKKALLSGKSIEGERRFYVQLPSPEEHSGHPIG  148 (225)
T ss_pred             ccccccccCCCCCeEEEEEEEEEcCCcccccchhhhhHHHHHHHHHHHHHHHhcCCCCCceEEEEEECCChHhcCCCccc
Confidence            44567899999999999976321                                   01222222 1  3567 78877


Q ss_pred             cccccccccccCCHHHHHHHHHhhhCCCCh-HHHHHHHHhc-----CC----------CccchhhHHHHHHHHhHH
Q 037162          119 QYLEGHSFAGRLSKEESNLLVDMSKNNVKP-KDILHVLKKR-----DM----------HNATTIRAIYNARRKCKV  178 (689)
Q Consensus       119 ~~~~~h~~~RrLs~e~k~~I~~L~~sgv~p-r~Il~~L~~~-----~g----------~~~~t~kDIyN~~~k~r~  178 (689)
                      ....  -....+.+...+.|.+|...|+.. .+|...|+..     +.          ..+.|.+||.|.......
T Consensus       149 ~~~~--~~~q~~~~~v~~ki~eLv~~gv~~v~e~k~~l~~fV~~~lf~~~~~p~~~n~~y~Pt~~di~n~~~~~~~  222 (225)
T PF15299_consen  149 QEAA--GLKQPLDPRVVEKIHELVAQGVTSVPEMKRHLKKFVEEELFKDQEPPPPTNRRYFPTDKDIRNHMYSAKK  222 (225)
T ss_pred             cccc--cccccCCHHHHHHHHHHHHcccccHHHHHHHHHHHhhhhccCCCCCCCCCccccCCchHHHHHHHHHHHh
Confidence            5321  123567788888999999999754 6666666432     21          123578899998765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-05
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-04
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 5e-12
 Identities = 72/433 (16%), Positives = 131/433 (30%), Gaps = 112/433 (25%)

Query: 10  ESGKEKVVN-VALMEREDMPREELQTELRNGLV-------IVIE------KSDVAANGRK 55
              ++++ N   +  + ++ R +   +LR  L+       ++I+      K+ VA +   
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--- 169

Query: 56  PRIIFTCERSGVYRDRSPQGPKPIKA--TGIQKCKCPFKL--KGQKMANNDDWALIVICG 111
                      V      Q     K     ++ C  P  +    QK+    D        
Sbjct: 170 -----------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TS 215

Query: 112 FHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYN 171
             +H +   L  HS    L      LL      N      L VL   ++ NA    A +N
Sbjct: 216 RSDHSSNIKLRIHSIQAEL----RRLLKSKPYENC-----LLVL--LNVQNAKAWNA-FN 263

Query: 172 ARRKCKVREQAGRSQMQLLMKIVGVTSTD--LTFSVCCVYLESERENNYIWALERLKGV- 228
               CK+          L      +T+    +T  +          +++   L   +   
Sbjct: 264 LS--CKI----------L------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 229 -------MEENMLPSVI--VIDRELALMKAIKKKFPSATTLLCRWHISRNVLANCKKLFE 279
                       LP  +     R L+++    +           W   ++V  NC KL  
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL------ATWDNWKHV--NCDKLTT 357

Query: 280 TNEIWETFISSWNLLVLAASEEEFAQRLKSM---ESDFSKYPTALTYIRNSSWTKVHTLL 336
             E      SS N+L       E+ +    +       +  PT L  +    W  V    
Sbjct: 358 IIE------SSLNVL----EPAEYRKMFDRLSVFPPS-AHIPTILLSLI---WFDVIKSD 403

Query: 337 ELQLVE--IKASL-ER---SLTMVQHDFKPSIFKELREFVAMNALTMILDESRRADSLSP 390
            + +V    K SL E+     T+        +  +L    A++    I+D      +   
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDS 461

Query: 391 DVFACGSPEIAEY 403
           D      P + +Y
Sbjct: 462 D--DLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 8e-12
 Identities = 88/628 (14%), Positives = 178/628 (28%), Gaps = 184/628 (29%)

Query: 140 DMSKNNVKPKDILHVLK---KRDM---HNATTIRAIYNARRKCK--VREQAGRSQMQLLM 191
           +  ++  + KDIL V +     +          ++I  ++ +    +  +   S    L 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLF 68

Query: 192 KIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIV------------ 239
             +          +   ++E     NY + +  +K    E   PS++             
Sbjct: 69  WTLLSKQE----EMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYN 121

Query: 240 ---------IDRE---LALMKAIKKKFPSA------------TTL---LCR--------- 263
                    + R    L L +A+ +  P+             T +   +C          
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 264 ----WHISRNVLANCKK----LFETNEIWETFISSWNLLVLAASE-----EEFAQRLKSM 310
               W ++   L NC      L    ++      +W      +S            L+ +
Sbjct: 182 FKIFW-LN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 311 ESDFSKYPTALTYIRN--SSWT------KVHTLL---ELQLVEIKASLERSLTMVQHDFK 359
                 Y   L  + N  ++            LL     Q+ +  ++   +   + H   
Sbjct: 238 LKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 360 PSIFKELREFVAMNALTMILDE-SRRADSLSPDVFACGSPEIAEYKREGRPIPLSSLHSH 418
                E++  +    L     +  R   + +P         IAE  R+G     +  H +
Sbjct: 297 TLTPDEVKSLLL-KYLDCRPQDLPREVLTTNP--RRLSI--IAESIRDGLATWDNWKHVN 351

Query: 419 RKKLD------LLQVNQDESKT----LSCMPEIEMIVKRFNDSDDPAKVQLLRKLRELAN 468
             KL       L  +   E +     LS  P           +  P  +     L  +  
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP---------SAHIPTIL-----LSLIWF 397

Query: 469 PASTFLLEPEVKGKTRGRPSLKAYTSARRNPSKFEYVLSNEDGKSIPAMPSSTLSLQLKK 528
                 +   V         L  Y+   + P +           SIP+     + L+LK 
Sbjct: 398 DVIKSDVMVVVN-------KLHKYSLVEKQPKESTI--------SIPS-----IYLELKV 437

Query: 529 PQKEK-------ICQSQPLKPVPFITLFPSGIRPYI--------RGAKDVAADGNCGFRT 573
             + +       +      K      L P  +  Y         +  +    +    FR 
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRM 495

Query: 574 V-ADLIGIGEDNW--ARVRRD---------LVDELQ--CHYNEYTLLLGYAGRYQELLHL 619
           V  D        +   ++R D         +++ LQ    Y  Y  +     +Y+ L++ 
Sbjct: 496 VFLDF------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNA 547

Query: 620 LSNFEPNPSYDHWMIMPNTGYL-IAFKY 646
           + +F P    ++ +    T  L IA   
Sbjct: 548 ILDFLPKIE-ENLICSKYTDLLRIALMA 574

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 20/134 (14%)

Query: 561 KDVAADGNCGFRTVADLIGIGEDNWAR-VRRDLVDELQCHYNEYTLLLGYAGRYQELLHL 619
                DGNC + ++A+L    + + +    + L +     Y +        G        
Sbjct: 34  VRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVG-------- 85

Query: 620 LSNFEPNPSYDHWMIMPNT--GYL----IAFKYNVIGLLISMQQCLTFLPLRSIPGPRSS 673
                    Y   M+  N     L    +A +  +  ++ ++             G    
Sbjct: 86  ----LSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEA-GIKFGDGDV 140

Query: 674 HKIIAIGYIYGCHF 687
              + + +    HF
Sbjct: 141 FTAVNLLHSGQTHF 154

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 20/134 (14%)

Query: 561 KDVAADGNCGFRTVAD-LIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHL 619
                DGNC + ++A+  +    D+     + L +     Y            YQE    
Sbjct: 34  VRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKY------------YQEEPEA 81

Query: 620 LSNFEPNPSYDHWMIMPNT--GYL----IAFKYNVIGLLISMQQCLTFLPLRSIPGPRSS 673
                    Y   M+  N     L    +A +  +  ++ ++             G    
Sbjct: 82  RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKF-GDGDV 140

Query: 674 HKIIAIGYIYGCHF 687
              + + +    HF
Sbjct: 141 FTAVNLLHSGQTHF 154

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 17/79 (21%)

Query: 561 KDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYT-LLLGYAGRYQELLHL 619
             V  D +C F  +A  I   +D+   +R  +  E+  +  ++   +L            
Sbjct: 23  HPVLDDNSCLFHAIAYGIF-KQDSVRDLREMVSKEVLNNPVKFNDAILD----------- 70

Query: 620 LSNFEPNPSYDHWMIMPNT 638
               +PN  Y  W++   +
Sbjct: 71  ----KPNKDYAQWILKMES 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	689
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.61
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.52
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.37
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.35
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	98.92
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.72
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	98.59
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.51
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	98.36
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.23
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	94.8
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	94.22
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	88.63

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.61  E-value=3e-16  Score=151.27  Aligned_cols=121  Identities=17%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             cccccccccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccccc
Q 037162          554 RPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWM  633 (689)
Q Consensus       554 ~~~i~~i~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~Wl  633 (689)
                      +.....+++|+|||||.|||||++|..+++.|..||+.++++|++++++|.+++.  +.|+++++.+      ..+..|.
T Consensus        55 ~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~--~~~e~Y~~~m------~~~~~WG  126 (185)
T 3pfy_A           55 DKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT--EDFTTYINRK------RKNNCHG  126 (185)
T ss_dssp             HHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------------C
T ss_pred             HHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHh------hCCCccc
Confidence            6778889999999999999999999999999999999999999999999999874  4589999988      4578899


Q ss_pred             cccchhhhhccccceeEEEEccCce-eeccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          634 IMPNTGYLIAFKYNVIGLLISMQQC-LTFLPLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       634 ~~~~~g~~iA~~y~~pv~~~s~~~s-~t~~P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      +.+... ++|..|++||++++.+.+ ...|+   +.. ....+||+|+|.+++||
T Consensus       127 g~iEL~-AlS~~~~v~I~V~~~~~~~i~i~~---g~~-~~~~~~I~L~Y~~~~HY  176 (185)
T 3pfy_A          127 NHIEMQ-AMAEMYNRPVEVYQYSTEPINTFH---GIH-QNEDEPIRVSYHRNIHY  176 (185)
T ss_dssp             CHHHHH-HHHHHHTSCEEEESSCSSCSEEEC---TTS-CCTTSCEEEEEETTTEE
T ss_pred             hHHHHH-HHHHhhCCcEEEEECCCCCeEEec---Ccc-CCCCCEEEEEECCCCCc
Confidence            998765 999999999999986532 12222   111 11258999999999998

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.52  E-value=8.1e-15  Score=145.07  Aligned_cols=115  Identities=15%  Similarity=0.197  Sum_probs=95.6

Q ss_pred             ccccccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCccccccccc
Q 037162          557 IRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMP  636 (689)
Q Consensus       557 i~~i~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~Wl~~~  636 (689)
                      ...+.+|+|||||+|||||++| .+++.|..||+.+++.|++|+++|.+.+-+ ..|+++++.+      ..+..|.+.+
T Consensus        19 ~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m------~~~~~WGg~i   90 (212)
T 3by4_A           19 VLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQWI------LKMESWGGAI   90 (212)
T ss_dssp             EEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHHT------TSTTSCCCHH
T ss_pred             CeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHHh------cCCCEEccHH
Confidence            5678899999999999999999 788999999999999999999999765533 6799999999      4578999998


Q ss_pred             chhhhhccccceeEEEEccC-ceeeccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          637 NTGYLIAFKYNVIGLLISMQ-QCLTFLPLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       637 ~~g~~iA~~y~~pv~~~s~~-~s~t~~P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      ++. ++|..|++||++++.. .+...|+    +..  .+++|+|+|. |+||
T Consensus        91 EL~-Als~~~~~~I~V~~~~~~~~~~~~----~~~--~~~~I~L~Y~-g~HY  134 (212)
T 3by4_A           91 EIG-IISDALAVAIYVVDIDAVKIEKFN----EDK--FDNYILILFN-GIHY  134 (212)
T ss_dssp             HHH-HHHHHHTCEEEEEETTTTEEEEES----TTT--CSEEEEEEEC-SSCE
T ss_pred             HHH-HHHHHHCCCEEEEECCCCCeEEeC----CCC--CCCeEEEEEc-CCcc
Confidence            875 9999999999999854 2333332    222  2578999998 8998

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.37  E-value=3e-13  Score=130.76  Aligned_cols=117  Identities=13%  Similarity=0.091  Sum_probs=89.8

Q ss_pred             cccccccCCCCcchHHHHHHhcCC-Ccc-----HHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccc
Q 037162          558 RGAKDVAADGNCGFRTVADLIGIG-EDN-----WARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDH  631 (689)
Q Consensus       558 ~~i~~v~~dg~Cgfraia~~l~~~-~~~-----~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~  631 (689)
                      -.|+.|+|||||.|||||.+|+.+ ++.     +..||+..++.|.+|++++.    .+..|+++++.+      ..++.
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~----~~~~~~~Y~~~m------~~~~~  100 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL----VGLSLEDYLKRM------LSDNE  100 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHH----HCCCHHHHHHHH------TSTTC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhh----cCCCHHHHHHHh------hCCCc
Confidence            346678999999999999999998 566     99999999999999998821    356799999999      55789


Q ss_pred             cccccchhhhhccccceeEEEEccCceeeccCC-CCCCCCCCCCCcEEEEEecCCCc
Q 037162          632 WMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPL-RSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       632 Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t~~P~-~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      |.+..+.. ++|..|+++|++++.+....++.. ..++..  ..++|.|+|.+++||
T Consensus       101 WGg~iEL~-Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HY  154 (185)
T 3phx_A          101 WGSTLEAS-MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHF  154 (185)
T ss_dssp             CCBHHHHH-HHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEE
T ss_pred             cCcHHHHH-HHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCc
Confidence            99988875 999999999999975432211111 112222  157899999966998

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.35  E-value=5e-13  Score=131.91  Aligned_cols=117  Identities=13%  Similarity=0.097  Sum_probs=90.3

Q ss_pred             cccccccCCCCcchHHHHHHhcCC-Ccc-----HHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccc
Q 037162          558 RGAKDVAADGNCGFRTVADLIGIG-EDN-----WARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDH  631 (689)
Q Consensus       558 ~~i~~v~~dg~Cgfraia~~l~~~-~~~-----~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~  631 (689)
                      -.|+.|+|||||.|||||.+|+.+ ++.     +..||+..++.|.+|++++.    .+..|+++++.+      ..++.
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~----~~~~feeY~~~m------~~~g~  100 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL----VGLSLEDYLKRM------LSDNE  100 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHH----HCCCHHHHHHHH------HSTTC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhh----cCCCHHHHHHHh------cCCCc
Confidence            446778999999999999999988 555     89999999999999998821    346799999999      45789


Q ss_pred             cccccchhhhhccccceeEEEEccCcee-eccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          632 WMIMPNTGYLIAFKYNVIGLLISMQQCL-TFLPLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       632 Wl~~~~~g~~iA~~y~~pv~~~s~~~s~-t~~P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      |.+..... ++|..|+++|++++.+... +......++...  .++|+|+|.+++||
T Consensus       101 WGG~iEL~-AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~--~~~I~L~Y~g~~HY  154 (219)
T 3phu_A          101 WGSTLEAS-MLAKEMGITIIIWTVAASDEVEAGIKFGDGDV--FTAVNLLHSGQTHF  154 (219)
T ss_dssp             CCCHHHHH-HHHHHTTCCEEEEEESSSSBEEEEEEESSCCT--TTSEEEEEETTTEE
T ss_pred             cCCHHHHH-HHHHHhCCCEEEEEecCCCCceeEEEecCCCC--CCeEEEEECCCcCc
Confidence            99988875 9999999999999643220 111112233322  57899999966998

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=98.92  E-value=1.8e-09  Score=108.36  Aligned_cols=90  Identities=4%  Similarity=-0.085  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCceee-ccCC
Q 037162          587 RVRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLT-FLPL  664 (689)
Q Consensus       587 ~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t-~~P~  664 (689)
                      .+|..-...|+.|+++|.+++.++..+++++. .+      .++..|.+...+. +||+++++||.++..+.+.. .=+.
T Consensus       134 ~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~v------e~~~~~~~~iei~-ALa~aL~v~I~V~~~d~~~~~~~~~  206 (234)
T 1tff_A          134 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQIT-ALSQALSIALQVEYVDEMDTALNHH  206 (234)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHHTCCEEEEECC-------CC
T ss_pred             HHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHh------hhhhcccccHHHH-HHHHHhCCCEEEEEcCCCCCccccc
Confidence            46777788899999999999876568999999 67      5678999887775 99999999999998665531 1112


Q ss_pred             CCCCCCCCCCCcEEEEEecCCCc
Q 037162          665 RSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       665 ~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      ..++.   ..|.|+|+|-+ .||
T Consensus       207 ~~~~~---~~~~I~LlY~p-gHY  225 (234)
T 1tff_A          207 VFPEA---ATPSVYLLYKT-SHY  225 (234)
T ss_dssp             CCCCC---SSCSEEEEEET-TEE
T ss_pred             cCCCC---CCCeEEEEECC-CCc
Confidence            22222   25779999995 597

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.72  E-value=3e-08  Score=101.89  Aligned_cols=126  Identities=17%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             ccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhh-hh-hh-----h-----------cc---CchhHHHHHhh
Q 037162          561 KDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYN-EY-TL-----L-----------LG---YAGRYQELLHL  619 (689)
Q Consensus       561 ~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~-~y-~~-----~-----------~~---~~~~~~~~~~~  619 (689)
                      ....|||||..+|++..+..-.|.-..+|+.|..-|..... .+ ..     .           |.   -..+|+.|+..
T Consensus       115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~  194 (390)
T 3dkb_A          115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM  194 (390)
T ss_dssp             BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred             EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence            34789999999999999999889999999999988886431 11 10     0           00   14679999999


Q ss_pred             hcCCCCCCcccccc-ccc-chhhhhccccceeEEEEcc--------C-------ceeeccCCCCCCCCCCCCCcEEEEEe
Q 037162          620 LSNFEPNPSYDHWM-IMP-NTGYLIAFKYNVIGLLISM--------Q-------QCLTFLPLRSIPGPRSSHKIIAIGYI  682 (689)
Q Consensus       620 l~~~~~~~~~~~Wl-~~~-~~g~~iA~~y~~pv~~~s~--------~-------~s~t~~P~~~~p~~~~~~~~i~l~~~  682 (689)
                      ........+.+.=+ ++- -|-++|||...||||+|+.        +       .+.+||||..||.-+.. .||+|||.
T Consensus       195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~r-sPI~LgY~  273 (390)
T 3dkb_A          195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYR-YPIVLGYD  273 (390)
T ss_dssp             TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCS-SCEEEEEC
T ss_pred             hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccC-CceEEEec
Confidence            86432222222111 222 3778899999999999951        1       26899999999987764 58999999


Q ss_pred             cCCCcc
Q 037162          683 YGCHFI  688 (689)
Q Consensus       683 ~~nHfv  688 (689)
                      + +||.
T Consensus       274 s-~HFs  278 (390)
T 3dkb_A          274 S-HHFV  278 (390)
T ss_dssp             S-SCEE
T ss_pred             c-Ccee
Confidence            6 8994

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=98.59  E-value=5.4e-08  Score=97.67  Aligned_cols=90  Identities=12%  Similarity=-0.059  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCceee--ccC
Q 037162          587 RVRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLT--FLP  663 (689)
Q Consensus       587 ~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t--~~P  663 (689)
                      .+|......|+.|+++|.+++.++..+++++. .+      .++..|.+...+. +||+++++||.++..+.+..  .-+
T Consensus       137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~v------e~~~~~~~~i~i~-ALa~al~v~I~V~~~d~~~~~~v~~  209 (234)
T 2zfy_A          137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHII-ALAQALSVSIQVEYMDRGEGGTTNP  209 (234)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHHTCCEEEEECC-CCSSCCEE
T ss_pred             HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHh------hhHhhcCCHHHHH-HHHHHhCCCEEEEEcCCCCCCcccc
Confidence            34555557888899999998876678999996 57      5578899887775 99999999999987554421  111


Q ss_pred             CCCCCCCCCCCCcEEEEEecCCCc
Q 037162          664 LRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       664 ~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      ...++..   .|.|+|+|-+ .||
T Consensus       210 ~~f~~~~---~p~I~LlY~p-gHY  229 (234)
T 2zfy_A          210 HIFPEGS---EPKVYLLYRP-GHY  229 (234)
T ss_dssp             EEESTTC---CCSEEEEEET-TEE
T ss_pred             eeCCCCC---CCeEEEEECC-CCc
Confidence            1112221   4789999995 597

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.51  E-value=1.6e-07  Score=98.08  Aligned_cols=117  Identities=21%  Similarity=0.157  Sum_probs=87.8

Q ss_pred             cccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhh-hhhh----------hcc-----Cc----hhHHHHHhhhc
Q 037162          562 DVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYN-EYTL----------LLG-----YA----GRYQELLHLLS  621 (689)
Q Consensus       562 ~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~-~y~~----------~~~-----~~----~~~~~~~~~l~  621 (689)
                      ...|||||..+|++..|..-.|....+|+.|..-|++... .|..          .+|     ++    .+|+.|+....
T Consensus       193 ~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As  272 (454)
T 3zrh_A          193 WNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLAS  272 (454)
T ss_dssp             CCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred             eecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999998886322 2211          221     22    45777887774


Q ss_pred             CCCCCCccccccccc-chhhhhccccceeEEEEcc--------------CceeeccCCCCCCCCCCCCCcEEEEEecCCC
Q 037162          622 NFEPNPSYDHWMIMP-NTGYLIAFKYNVIGLLISM--------------QQCLTFLPLRSIPGPRSSHKIIAIGYIYGCH  686 (689)
Q Consensus       622 ~~~~~~~~~~Wl~~~-~~g~~iA~~y~~pv~~~s~--------------~~s~t~~P~~~~p~~~~~~~~i~l~~~~~nH  686 (689)
                      .+      ..  ++- -|-++|||..+||||+|+.              ..+.+|||+..||.-... .||+|||.+ .|
T Consensus       273 ~P------g~--sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~r-sPIvLgY~~-gH  342 (454)
T 3zrh_A          273 QP------GA--SLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWK-SPIALGYTR-GH  342 (454)
T ss_dssp             ST------TC--CCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCS-CCEEEEEET-TE
T ss_pred             CC------cc--hHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcC-CceEEEecc-cc
Confidence            31      11  221 3778999999999999962              235799999999987753 689999996 79


Q ss_pred             cc
Q 037162          687 FI  688 (689)
Q Consensus       687 fv  688 (689)
                      |.
T Consensus       343 Fs  344 (454)
T 3zrh_A          343 FS  344 (454)
T ss_dssp             EE
T ss_pred             ee
Confidence            84

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=98.36  E-value=6.3e-07  Score=91.17  Aligned_cols=88  Identities=10%  Similarity=-0.058  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCce-------e
Q 037162          588 VRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQC-------L  659 (689)
Q Consensus       588 vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s-------~  659 (689)
                      +|..-..+|+.|+++|.+++.+...+++++. .+      .++.+|.+...+. +||+++++||-+.-.+.+       .
T Consensus       173 LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eV------e~~~~e~d~leI~-ALa~aL~v~I~V~ylDrs~g~~v~~h  245 (284)
T 4dhi_B          173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEI------EPMWKDADHLAIN-SLIKAAGTRVRIEYMDRTAAPNGGWH  245 (284)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHTTCCEEEEESSGGGCTTSSSE
T ss_pred             HHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhc------eehhhcccHHHHH-HHHHHhCCcEEEEEecCCCCCCCccc
Confidence            4445556788899999998866667899998 67      5689999998887 999999999977643322       2


Q ss_pred             eccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          660 TFLPLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       660 t~~P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      ..||-...+    ..|.|.|.|- +.||
T Consensus       246 ~~fp~~~~~----~~p~I~LLYr-pgHY  268 (284)
T 4dhi_B          246 YDIPSDDQQ----IAPEITLLYR-PGHY  268 (284)
T ss_dssp             EEESCCCSC----CCCSEEEEEE-TTEE
T ss_pred             ccCCCCCCC----CCCEEEEeec-CCCc
Confidence            213543221    1367999999 5797

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.23  E-value=1e-06  Score=95.57  Aligned_cols=91  Identities=13%  Similarity=-0.045  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCce--eecc
Q 037162          586 ARVRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQC--LTFL  662 (689)
Q Consensus       586 ~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s--~t~~  662 (689)
                      ..+|..-...|+.|.++|.+++.+...+++++. .+      -+.+.|.+...+. +||++++++|.++-.+.+  ...-
T Consensus       301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~v------e~~~~e~d~l~I~-ALa~al~v~I~V~yld~~~~~~v~  373 (399)
T 4ddg_A          301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHII-ALAQALSVSIQVEYMDRGEGGTTN  373 (399)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHT------SSTTCCBCHHHHH-HHHHHHTCCCEEEECSCCSSSCCC
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhc------eeHHhhCcHHHHH-HHHHHcCCcEEEEEcCCCCCCccc
Confidence            345666667888899999998866667889888 66      5688999988876 899999999988743221  1111


Q ss_pred             CCCCCCCCCCCCCcEEEEEecCCCc
Q 037162          663 PLRSIPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       663 P~~~~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      +...+.+.   .+.|+|+|- +.||
T Consensus       374 ~~~~~~~~---~~~I~LLYr-PgHY  394 (399)
T 4ddg_A          374 PHIFPEGS---EPKVYLLYR-PGHY  394 (399)
T ss_dssp             EEETTTTC---CCCCEEEEE-TBEE
T ss_pred             eeeCCCCC---CCEEEEEEc-CCcc
Confidence            12222222   477999998 5687

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=94.80  E-value=0.11  Score=41.73  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=41.0

Q ss_pred             cCeEEEEeecccCCCCCccEEEEEEecCCcCCCCCCCCCCCCCcCCceeeCCceEEEEEEeecCCCeEEEEEeCcccCCC
Q 037162           38 NGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPA  117 (689)
Q Consensus        38 ~GF~v~i~rS~~~~~g~~~~~~~~C~r~G~~r~~~~~~~~~rr~~~s~ktgCpa~i~~~~~~~~~~W~V~~~~~~HNH~l  117 (689)
                      -||..|+--.+..++....|.+|.|+.                      .|||++=.+.+..++..-.+..+.++|||++
T Consensus        16 DGy~WRKYGQK~ikgs~~PRsYYrCt~----------------------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           16 DGYRWRKYGQKSVKGSPYPRSYYRCSS----------------------PGCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             CSSCEEEEEEECCTTCSSCEEEEEECS----------------------TTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CCchhhhCcccccCCCCCceeEeEcCC----------------------CCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            366666533333333344577788851                      2899999998877777888999999999986

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=94.22  E-value=0.094  Score=42.37  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             CCceEEEEEEeecCCCeEEEEEeCcccCCC
Q 037162           88 KCPFKLKGQKMANNDDWALIVICGFHNHPA  117 (689)
Q Consensus        88 gCpa~i~~~~~~~~~~W~V~~~~~~HNH~l  117 (689)
                      |||++=.+.+...+..-.+..+.++|||++
T Consensus        47 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   76 (78)
T 1wj2_A           47 GCGVRKHVERAATDPKAVVTTYEGKHNHDL   76 (78)
T ss_dssp             SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence            799999998877777888889999999986

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=88.63  E-value=0.65  Score=38.38  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=18.0

Q ss_pred             CCceEEEEEEeecCCCeEEEEEeCcccCCCCc
Q 037162           88 KCPFKLKGQKMANNDDWALIVICGFHNHPATQ  119 (689)
Q Consensus        88 gCpa~i~~~~~~~~~~W~V~~~~~~HNH~l~~  119 (689)
                      +|+|++....   + .  + .....|||++..
T Consensus        51 kCrARi~T~~---~-~--~-~~~~~HnH~p~~   75 (87)
T 2rpr_A           51 GCRSRAITQG---H-R--I-MVMRSHCHQPDL   75 (87)
T ss_dssp             CCCCEEEEET---T-E--E-EECSCCSSCCCH
T ss_pred             CCCEEEEEcC---C-C--E-ECCCCcCCCCch
Confidence            7999998864   2 2  3 356889998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	98.6
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	95.37

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.8e-08  Score=96.28  Aligned_cols=90  Identities=7%  Similarity=-0.007  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhccCchhHHHHHhh-hcCCCCCCcccccccccchhhhhccccceeEEEEccCceeeccCCCC
Q 037162          588 VRRDLVDELQCHYNEYTLLLGYAGRYQELLHL-LSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPLRS  666 (689)
Q Consensus       588 vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~-l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t~~P~~~  666 (689)
                      +|......++.+.++|.+++.++..+++++.. +      .+.+.|.+-..+. +||.+|++||.++..+.+..-++...
T Consensus       129 lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v------~~~~~e~d~ieI~-aLa~al~v~I~V~~~d~~~~~~~~~~  201 (228)
T d1tffa_         129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQIT-ALSQALSIALQVEYVDEMDTALNHHV  201 (228)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHHTCCEEEEECC-------CCC
T ss_pred             HHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHH------ccccccCCcHHHH-HHHHHhCCCEEEEEecCCCCcccccc
Confidence            47777788888888898887666667777654 6      4567899988875 99999999999987544333333333


Q ss_pred             CCCCCCCCCcEEEEEecCCCc
Q 037162          667 IPGPRSSHKIIAIGYIYGCHF  687 (689)
Q Consensus       667 ~p~~~~~~~~i~l~~~~~nHf  687 (689)
                      -|...  +++|.|.|- +.||
T Consensus       202 ~~~~~--~~~I~Lly~-pgHY  219 (228)
T d1tffa_         202 FPEAA--TPSVYLLYK-TSHY  219 (228)
T ss_dssp             CCCCS--SCSEEEEEE-TTEE
T ss_pred             CCCCC--CCEEEEEeC-CCCc
Confidence            33332  578999997 5687

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.37  E-value=0.016  Score=44.02  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             CeEEEEeecccCCCCCccEEEEEEecCCcCCCCCCCCCCCCCcCCceeeCCceEEEEEEeecCCCeEEEEEeCcccCCC
Q 037162           39 GLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPA  117 (689)
Q Consensus        39 GF~v~i~rS~~~~~g~~~~~~~~C~r~G~~r~~~~~~~~~rr~~~s~ktgCpa~i~~~~~~~~~~W~V~~~~~~HNH~l  117 (689)
                      ||..|+--.+..++....|.+|.|+.                      .||+|+=.+.+..+++.-.+..+.++|||++
T Consensus        13 Gy~WRKYGQK~ikgs~~pRsYYrCt~----------------------~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          13 GYRWRKYGQKVVKGNPYPRSYYKCTT----------------------PGCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SSCBCCCEEECCTTCSSCEEEEEEEC----------------------SSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CcEecccCceeccCCCCceEEEEccc----------------------cCCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            66665422222233445678888963                      1799999999887777888888999999975