Citrus Sinensis ID: 037220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccEEEEEcEEcccccccccccHccccccccEEEEEcccccccccccccccHcccccEEEcccccHEHccccc
Coil and Loop (DISEMBL)
menlmgykfqpsnEQILYLMVEKrlnphfshhpikdivdicslepgdlatasktesedqvwyffcephhkymksnrahrrtkaghgkitskdsQIKARNGL
Flexible Loop (DISEMBL)
menlmgykfqpsNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAhrrtkaghgkitskdsqikarngl
Low Complexity Region (SEG)
MENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL
Disordered region (IsUnstruct)
*************EQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLAT*******DQVWYFFCEPHHKY******************************
Disordered Region (DISOPRED)
MENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR***
Disordered Region (DISEMBL)
MENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKS***************************
Disordered Region (DISPRO)
*ENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
O81914	362	NAC domain-containing pro	no	no	0.990	0.276	0.372	1e-12
O81913	359	NAC domain-containing pro	no	no	0.990	0.278	0.372	2e-12
Q5CD17	396	NAC domain-containing pro	yes	no	0.861	0.219	0.406	3e-10
Q9M126	457	NAC domain-containing pro	no	no	0.990	0.218	0.326	4e-10
Q84K00	567	NAC domain-containing pro	no	no	0.910	0.162	0.375	1e-09
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.920	0.3	0.363	2e-08
Q9FWX2	395	NAC domain-containing pro	no	no	0.940	0.240	0.367	3e-08
Q0WV96	429	NAC domain-containing pro	no	no	0.980	0.230	0.310	6e-08
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.900	0.266	0.336	2e-07
Q9FLJ2	336	NAC domain-containing pro	no	no	0.861	0.258	0.351	2e-07

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 2/102 (1%)

Query: 1   MENLMGYKFQPSNEQILYLMVE-KRLNPHFSH-HPIKDIVDICSLEPGDLATASKTESED 58
           M N +G++F+P++ +I+ + +  K L  + SH   +   VDICS +P DL + S+ ++ D
Sbjct: 1   MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 60

Query: 59  QVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
           QVWYFF    +KY K +R  R+TK+G  K T     I  + G
Sbjct: 61  QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTG 102

Arabidopsis thaliana (taxid: 3702)

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 1   MENLMGYKFQPSNEQIL-YLMVEKRLNPHFSH-HPIKDIVDICSLEPGDLATASKTESED 58
           M N +G++F+P++E+I+ + +  K L+   SH   +   VDICS EP DL + S  +S D
Sbjct: 1   MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60

Query: 59  QVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
            VWYFF     KY + ++  RRT +G  K T K   +  + G
Sbjct: 61  GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRG 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 6   GYKFQPSN-EQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++ E IL  +++K LNP F+  PI + VD+   EP DL   SK +  ++ WYFF
Sbjct: 22  GFRFHPTDAEVILSYLLQKLLNPSFTSLPIGE-VDLNKCEPWDLP--SKAKMGEKEWYFF 78

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
                KY    R +R TK G+ K T KD +I
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREI 109

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M126|NAC69_ARATH NAC domain-containing protein 69 OS=Arabidopsis thaliana GN=NAC69 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 1   MENLMGYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
           +++L+GY+F P+ E+++ + +  K L   +        ++ICS +P  L + SK +S+D 
Sbjct: 2   VKDLVGYRFYPTGEELINHYLKNKILGKTWLVDEAISEINICSYDPIYLPSLSKIKSDDP 61

Query: 60  VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
           VWYFFC   +   K     R T +G+ K T  D +IK + G
Sbjct: 62  VWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRG 102

Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 6   GYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+++ Y +  K  N  F    I  + DI   EP DL   SK +S D  WYFF
Sbjct: 12  GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
                KY   ++ +R T+ G+ K T KD +I  RNG
Sbjct: 71  SMLDKKYSNGSKTNRATEKGYWKTTGKDREI--RNG 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 2   ENLM--GYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESED 58
           E+LM  G++F P++E+++ Y +++K L+ +FS   I   VD+   EP +L   +K   ++
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQ-VDLNKSEPWELPEKAKMGEKE 75

Query: 59  QVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKA 97
             WYFF     KY    R +R T+AG+ K T KD +IK+
Sbjct: 76  --WYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKS 112

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 6   GYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQV-WYF 63
           G++F P++E+++ Y + +K  +       IKDI D+  +EP DL    K   E+Q  WYF
Sbjct: 10  GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDI-DLYKIEPWDLQELCKIGHEEQSDWYF 68

Query: 64  FCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
           F     KY    R +R TKAG  K T +D  I  R+ L
Sbjct: 69  FSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSL 106

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV96|NAC1_ARATH NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 1   MENLMGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDI--VDICSLEPGDLATASKTESED 58
           ME+ +G+ F+P++E+++   +  ++  + S      I  V+ICS +P +L   SK +S D
Sbjct: 1   MEDQVGFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRD 60

Query: 59  QVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
            +WYFF    +   K NR  R T +G  K+T +  ++K + G 
Sbjct: 61  AMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGF 101

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 6   GYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ-VWYFF 64
           G++F P++E++L+  ++K+++       +   VD+  LEP DL    K  S  Q  WYFF
Sbjct: 12  GFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEWYFF 71

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIK 96
                KY   +R +R T AG  K T +D  I+
Sbjct: 72  SHKDRKYPTGSRTNRATHAGFWKATGRDKCIR 103

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 6   GYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+++ + + +K L+  FS   I + VD+   EP +L   +K   ++  WYFF
Sbjct: 19  GFRFHPTDEELITHYLHKKVLDTSFSAKAIGE-VDLNKSEPWELPWMAKMGEKE--WYFF 75

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
           C    KY    R +R T+AG+ K T KD +I
Sbjct: 76  CVRDRKYPTGLRTNRATEAGYWKATGKDKEI 106

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
255548119	377	hypothetical protein RCOM_1341380 [Ricin	0.930	0.249	0.395	2e-12
296089037	335	unnamed protein product [Vitis vinifera]	0.930	0.280	0.372	4e-12
255555833	615	transcription factor, putative [Ricinus	0.970	0.159	0.363	4e-12
225453680	560	PREDICTED: uncharacterized protein LOC10	0.930	0.167	0.372	4e-12
302399031	850	NAC domain class transcription factor [M	0.970	0.115	0.373	6e-12
358346559	400	NAC domain protein [Medicago truncatula]	0.920	0.232	0.375	2e-11
21358787	585	nam-like protein 1 [Petunia x hybrida]	0.950	0.164	0.364	2e-11
224061527	537	NAC domain protein, IPR003441 [Populus t	0.970	0.182	0.343	2e-11
293334813	371	uncharacterized protein LOC100382573 [Ze	0.881	0.239	0.413	3e-11
297798362	507	predicted protein [Arabidopsis lyrata su	1.0	0.199	0.333	4e-11

>gi|255548119|ref|XP_002515116.1| hypothetical protein RCOM_1341380 [Ricinus communis] gi|223545596|gb|EEF47100.1| hypothetical protein RCOM_1341380 [Ricinus communis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 4   LMGYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWY 62
           L+GY+F P++++++ + +  K L       PI  I  +C  EP D+     T  EDQVWY
Sbjct: 21  LVGYRFHPTDDELVDHFLKLKMLGRDNVKPPIPQI-KVCDFEPWDIPALVNTNFEDQVWY 79

Query: 63  FFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
           FFC   +KY+ S R++R TKAG+ K T K  ++KA+
Sbjct: 80  FFCARDYKYLHSRRSNRTTKAGYWKPTGKPRKVKAK 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 57/94 (60%)

Query: 5   MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           +G++F P++E+++   ++ ++    SH  I   VD+C  EP DL   S  ++ D  W+FF
Sbjct: 8   VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFF 67

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
           C P +KY    R++R T+AG+ K T KD  IK+R
Sbjct: 68  CPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSR 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555833|ref|XP_002518952.1| transcription factor, putative [Ricinus communis] gi|223541939|gb|EEF43485.1| transcription factor, putative [Ricinus communis]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 1   MENL-MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
           ME+L +G++F+P++E+++   +  ++N   S   +   VD+C  EP DL   S  +++D 
Sbjct: 6   MESLPLGFRFRPTDEELINHYLRLKINGRDSEVDVISEVDVCKWEPWDLPGLSVIKTDDP 65

Query: 60  VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
            W+FFC    KY    R++R T AG+ K T KD  I+AR
Sbjct: 66  EWFFFCPRDRKYPNGQRSNRATDAGYWKATGKDRTIRAR 104

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 57/94 (60%)

Query: 5   MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           +G++F P++E+++   ++ ++    SH  I   VD+C  EP DL   S  ++ D  W+FF
Sbjct: 16  VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFF 75

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
           C P +KY    R++R T+AG+ K T KD  IK+R
Sbjct: 76  CPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSR 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399031|gb|ADL36810.1| NAC domain class transcription factor [Malus x domestica]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 1   MENL-MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
           ME+L +G++F+P++E+++   +  ++N   S   +   +D+C  EP DL   S  +S+DQ
Sbjct: 6   MESLPLGFRFRPTDEELINHYLRLKINGRDSEVRVIPEIDVCRWEPWDLPKLSVIKSDDQ 65

Query: 60  VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
            W+FFC    KY   +R++R T AG+ K T KD  IK+R
Sbjct: 66  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSR 104

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346559|ref|XP_003637334.1| NAC domain protein [Medicago truncatula] gi|358346862|ref|XP_003637483.1| NAC domain protein [Medicago truncatula] gi|355503269|gb|AES84472.1| NAC domain protein [Medicago truncatula] gi|355503418|gb|AES84621.1| NAC domain protein [Medicago truncatula]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 5   MGYKFQPSNEQILYLMVEKRL--NPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWY 62
           +G++F+P++E+++   ++K+L  N    ++ I + VD+C  EP DL   S  +S D  W+
Sbjct: 13  VGFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAE-VDVCKFEPWDLPACSLIKSNDPEWF 71

Query: 63  FFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
           FFC   +KY  S R +RRT+ G+ K T  D +IK R
Sbjct: 72  FFCPRDYKYANSKRFNRRTQCGYWKATGLDRKIKVR 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21358787|gb|AAM47025.1| nam-like protein 1 [Petunia x hybrida]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%)

Query: 5   MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           +GY+F+P++E+++   +  ++N   +   +   VDIC LEP DL   S  ES D  W+FF
Sbjct: 29  VGYRFRPTDEELVNHYLRLKINGADNEVSVIREVDICKLEPWDLPIWSVVESNDNEWFFF 88

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
           C    KY    R +R T+ G+ K T KD  I  + G
Sbjct: 89  CPKDRKYQNGQRLNRATERGYWKATGKDRNIVTKKG 124

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061527|ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222847782|gb|EEE85329.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 1   MENL-MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
           M++L +G++F+P++E+++   +  ++N   S   +   +D+C  EP DL   S  +++D 
Sbjct: 5   MDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGQSVIKTDDP 64

Query: 60  VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
            W+FFC    KY   +R++R T AG+ K T KD  IK+R
Sbjct: 65  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSR 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293334813|ref|NP_001168776.1| uncharacterized protein LOC100382573 [Zea mays] gi|223972957|gb|ACN30666.1| unknown [Zea mays] gi|323388697|gb|ADX60153.1| NAC family member [Zea mays]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 6   GYKFQPSNEQILY-LMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESED-QVWYF 63
           G++F P++E+++   +++K LNP F+ H I + VD+   EP DL + +K   ED + WYF
Sbjct: 24  GFRFHPTDEEVITSYLLQKLLNPSFAPHAIGE-VDLNKCEPWDLPSKAKMGEEDSKEWYF 82

Query: 64  FCEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
           FC    KY    RA+R TK G+ K T KD +I
Sbjct: 83  FCRKGMKYPTGTRANRATKEGYWKATGKDREI 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798362|ref|XP_002867065.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312901|gb|EFH43324.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 1   MENL-MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
           ME+L +G++F+P++E+++   +  ++N   S   +   +D+C  EP DL   S  +++D 
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVCKWEPWDLPALSVIKTDDP 65

Query: 60  VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
            W+FFC    KY   +R++R T +G+ K T KD  IK++  L
Sbjct: 66  EWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTL 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	1.0	0.189	0.333	4.2e-13
TAIR|locus:2204783	359	NAC004 "NAC domain containing	0.990	0.278	0.372	4.6e-13
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.970	0.150	0.333	7e-12
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.950	0.204	0.353	8.4e-12
TAIR|locus:2153899	451	TIP "TCV-interacting protein"	0.920	0.206	0.344	1e-11
TAIR|locus:2142285	292	NAC096 "NAC domain containing	0.930	0.321	0.308	5.2e-11
TAIR|locus:2116982	457	NAC069 "NAC domain containing	0.990	0.218	0.326	9.7e-11
TAIR|locus:2184342	567	NAC2 "NAC domain containing pr	0.910	0.162	0.375	1.1e-10
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.930	0.197	0.329	1.7e-10
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.930	0.196	0.329	2.2e-10

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 34/102 (33%), Positives = 61/102 (59%)

Query:     1 MENL-MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
             ME+L +G++F+P++E+++   +  ++N   S   +   +D+C  EP DL   S  +++D 
Sbjct:     6 MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVCKWEPWDLPALSVIKTDDP 65

Query:    60 VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
              W+FFC    KY   +R++R T +G+ K T KD  IK++  L
Sbjct:    66 EWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTL 107

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2204783 NAC004 "NAC domain containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 38/102 (37%), Positives = 58/102 (56%)

Query:     1 MENLMGYKFQPSNEQIL-YLMVEKRLNPHFSH-HPIKDIVDICSLEPGDLATASKTESED 58
             M N +G++F+P++E+I+ + +  K L+   SH   +   VDICS EP DL + S  +S D
Sbjct:     1 MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60

Query:    59 QVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
              VWYFF     KY + ++  RRT +G  K T K   +  + G
Sbjct:    61 GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRG 102

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 33/99 (33%), Positives = 58/99 (58%)

Query:     1 MENL-MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
             ME L +G++F+P++E+++   +  ++N       +   +D+C  EP DL   S  +++DQ
Sbjct:    21 MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEIDVCKWEPWDLPGLSVIKTDDQ 80

Query:    60 VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKAR 98
              W+FFC    KY   +R++R T  G+ K T KD  IK++
Sbjct:    81 EWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKSK 119

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 35/99 (35%), Positives = 60/99 (60%)

Query:     1 MENL-MGYKFQPSNEQILYLMVEKRLNPHFSH-HPIKDIVDICSLEPGDLATASKTESED 58
             M++L +G +F+P++E+++   + +++N H      I++I DIC  EP DL   S  +++D
Sbjct:    10 MDSLPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREI-DICKWEPWDLPDFSVIKTKD 68

Query:    59 QVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKA 97
               W +FC    KY   +R +R T AG+ K T KD +IK+
Sbjct:    69 SEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKS 107

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2153899 TIP "TCV-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/93 (34%), Positives = 53/93 (56%)

Query:     5 MGYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
             +G++F P++E+++   +  ++N H +   +   +DIC  EP DL   S  ++ D  W FF
Sbjct:    15 VGFRFSPTDEELVRYYLRLKINGHDNDVRVIREIDICKWEPWDLPDFSVVKTTDSEWLFF 74

Query:    65 CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKA 97
             C    KY   +R +R T AG+ K T KD +IK+
Sbjct:    75 CPLDRKYPSGSRMNRATVAGYWKATGKDRKIKS 107

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0051607 "defense response to virus" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2142285 NAC096 "NAC domain containing protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 29/94 (30%), Positives = 53/94 (56%)

Query:     6 GYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFC 65
             G++F P++E+++   +++++        +  ++D+ S +P +L   S   + D  WYFFC
Sbjct:     9 GFRFHPTDEELIEYYLKRKVEGLEIELEVIPVIDLYSFDPWELPDKSFLPNRDMEWYFFC 68

Query:    66 EPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARN 99
                 KY    R +R TKAG+ K T KD +I +R+
Sbjct:    69 SRDKKYPNGFRTNRGTKAGYWKATGKDRKITSRS 102

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2116982 NAC069 "NAC domain containing protein 69" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 33/101 (32%), Positives = 56/101 (55%)

Query:     1 MENLMGYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQ 59
             +++L+GY+F P+ E+++ + +  K L   +        ++ICS +P  L + SK +S+D 
Sbjct:     2 VKDLVGYRFYPTGEELINHYLKNKILGKTWLVDEAISEINICSYDPIYLPSLSKIKSDDP 61

Query:    60 VWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
             VWYFFC   +   K     R T +G+ K T  D +IK + G
Sbjct:    62 VWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRG 102

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2184342 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 36/96 (37%), Positives = 52/96 (54%)

Query:     6 GYKFQPSNEQIL-YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
             G++F P++E+++ Y +  K  N  F    I  + DI   EP DL   SK +S D  WYFF
Sbjct:    12 GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query:    65 CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
                  KY   ++ +R T+ G+ K T KD +I  RNG
Sbjct:    71 SMLDKKYSNGSKTNRATEKGYWKTTGKDREI--RNG 104

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009962 "regulation of flavonoid biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 31/94 (32%), Positives = 52/94 (55%)

Query:     6 GYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFC 65
             G++F P++E+++   +++++N       I   VD+   EP DL   S   S+DQ W+FF 
Sbjct:     9 GFRFHPTDEELITYYLKRKINGQEIELEIIPEVDLYKCEPWDLPGKSLIPSKDQEWFFFS 68

Query:    66 EPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARN 99
                 KY   +R +R TK G+ K T KD ++  R+
Sbjct:    69 PRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRD 102

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 31/94 (32%), Positives = 52/94 (55%)

Query:     6 GYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFC 65
             G++F P++E+++   +++++N       +   VD+   EP DL   S   S+DQ WYFF 
Sbjct:     9 GFRFHPTDEELITYYLKRKINGLEIELEVIAEVDLYKCEPWDLPGKSLLPSKDQEWYFFS 68

Query:    66 EPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARN 99
                 KY   +R +R TK G+ K T KD ++  R+
Sbjct:    69 PRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRD 102

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	7e-17

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 69.5 bits (171), Expect = 7e-17
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 6   GYKFQPSNEQIL--YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYF 63
           G++F P++E+++  YL  +    P      I + VDI   EP DL    K +  D+ WYF
Sbjct: 4   GFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPE-VDIYKFEPWDLP-DGKAKGGDREWYF 61

Query: 64  FCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNG 100
           F     KY   +R +R T +G+ K T KD  + ++ G
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGG 98

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=3.4e-37  Score=208.90  Aligned_cols=95  Identities=32%  Similarity=0.542  Sum_probs=66.0

Q ss_pred             CCCCceecCChHHHHHHHH-HhhcCCCCCC-CCceeccCCCCCCccCcccccccCCCCceEEEEeccccccCCCCCcccc
Q 037220            3 NLMGYKFQPSNEQILYLMV-EKRLNPHFSH-HPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHRR   80 (101)
Q Consensus         3 lppG~rF~PTDeELi~~yL-~Ki~g~~~~~-~~I~e~~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R~   80 (101)
                      |||||||+|||+|||.+|| +|++|.+++. ++|.++ |||+.+||+|+...  .+.+.+|||||++++++.++.|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~-Diy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDV-DIYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE---GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeec-ccCccChHHhhhhc--cCCCceEEEEEecccccCCccccccc
Confidence            7999999999999999999 9999999887 789999 99999999999422  23457999999999999999999999


Q ss_pred             CCCCeeeeeccceeeecCCC
Q 037220           81 TKAGHGKITSKDSQIKARNG  100 (101)
Q Consensus        81 ~~~G~Wk~~g~~~~I~~~~g  100 (101)
                      +++|+||++|+.++|.+.+|
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g   97 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGG   97 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TT
T ss_pred             ccceEEeecccccccccccc
Confidence            99999999999999998543

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-04
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		6e-04
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		6e-04

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 6   GYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFC 65
           G++F P++++++   + ++        PI   VD+   +P DL   +   + +  WYFF 
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75
Query: 66  EPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARN 99
               KY   +R +R    G+ K T  D  +  R 
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG 109

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 6   GYKFQPSNEQILY-LMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+++   +  K     FS   I +I D+   +P  L   +K    ++ WYFF
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLP--NKALFGEKEWYFF 79
Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
                KY   +R +R   +G+ K T  D  I
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKII 110

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 6   GYKFQPSNEQILY-LMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+++   +  K     FS   I +I D+   +P  L   +K    ++ WYFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLP--NKALFGEKEWYFF 76
Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
                KY   +R +R   +G+ K T  D  I
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKII 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-16
1ut7_A	171	No apical meristem protein; transcription regulati	5e-16

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 68.5 bits (168), Expect = 3e-16
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 6   GYKFQPSNEQIL--YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYF 63
           G++F P++++++  YL   K          I + VD+   +P DL   +   + +  WYF
Sbjct: 18  GFRFHPTDDELVEHYLC-RKAAGQRLPVPIIAE-VDLYKFDPWDLPERALFGARE--WYF 73

Query: 64  FCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
           F     KY   +R +R    G+ K T  D  +  R   
Sbjct: 74  FTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT 111

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 68.1 bits (167), Expect = 5e-16
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 6   GYKFQPSNEQIL--YLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYF 63
           G++F P++E+++  YL   K     FS   I + +D+   +P  L   +     ++ WYF
Sbjct: 20  GFRFYPTDEELMVQYLC-RKAAGYDFSLQLIAE-IDLYKFDPWVLPNKAL--FGEKEWYF 75

Query: 64  FCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
           F     KY   +R +R   +G+ K T  D  I      
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.5e-41  Score=241.38  Aligned_cols=95  Identities=23%  Similarity=0.480  Sum_probs=84.6

Q ss_pred             CCCCCCceecCChHHHHHHHH-HhhcCCCCCCCCceeccCCCCCCccCcccccccCCCCceEEEEeccccccCCCCCccc
Q 037220            1 MENLMGYKFQPSNEQILYLMV-EKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHR   79 (101)
Q Consensus         1 m~lppG~rF~PTDeELi~~yL-~Ki~g~~~~~~~I~e~~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R   79 (101)
                      +.|||||||+|||||||.||| +|+.|.+++.++|.|+ |||.+|||+||+.+..+  +.+|||||++.+|+++|.|.+|
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCE
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhccC--CceEEEEeccccccCCCCCcee
Confidence            479999999999999999999 9999999999999999 99999999999987643  4799999999999999999999


Q ss_pred             cCCCCeeeeeccceeeecC
Q 037220           80 RTKAGHGKITSKDSQIKAR   98 (101)
Q Consensus        80 ~~~~G~Wk~~g~~~~I~~~   98 (101)
                      +|++|+||++|++++|.++
T Consensus        90 ~t~~G~WkatG~dk~I~~~  108 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPR  108 (174)
T ss_dssp             EETTEEEEECSCCEEECCS
T ss_pred             ecCCceEccCCCCcEEeeC
Confidence            9999999999999999875

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=4.2e-41  Score=238.49  Aligned_cols=95  Identities=26%  Similarity=0.482  Sum_probs=82.4

Q ss_pred             CCCCCCceecCChHHHHHHHH-HhhcCCCCCCCCceeccCCCCCCccCcccccccCCCCceEEEEeccccccCCCCCccc
Q 037220            1 MENLMGYKFQPSNEQILYLMV-EKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHR   79 (101)
Q Consensus         1 m~lppG~rF~PTDeELi~~yL-~Ki~g~~~~~~~I~e~~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R   79 (101)
                      +.|||||||+|||||||.||| +|+.|.+++.++|+|+ |||.+|||+||+.+..  ++++|||||++.+|+++|.|.+|
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhhc--CCccEEEEeccccccCCCCcccc
Confidence            479999999999999999999 9999999999999999 9999999999998653  35799999999999999999999


Q ss_pred             cCCCCeeeeeccceeeecC
Q 037220           80 RTKAGHGKITSKDSQIKAR   98 (101)
Q Consensus        80 ~~~~G~Wk~~g~~~~I~~~   98 (101)
                      +|++|+||++|++++|.++
T Consensus        92 ~t~~G~Wk~tG~~k~I~~~  110 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIISTE  110 (171)
T ss_dssp             EETTEEEEEEEEEEEEEET
T ss_pred             cCCCCEEeccCCCceEEec
Confidence            9999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-11

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.4 bits (133), Expect = 1e-11
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 6   GYKFQPSNEQ-ILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+ ++  +  K     FS   I +I D+   +P  L   +    ++  WYFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARNGL 101
                KY   +R +R   +G+ K T  D  I      
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-40  Score=231.57  Aligned_cols=95  Identities=26%  Similarity=0.482  Sum_probs=81.9

Q ss_pred             CCCCCCceecCChHHHHHHHH-HhhcCCCCCCCCceeccCCCCCCccCcccccccCCCCceEEEEeccccccCCCCCccc
Q 037220            1 MENLMGYKFQPSNEQILYLMV-EKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHR   79 (101)
Q Consensus         1 m~lppG~rF~PTDeELi~~yL-~Ki~g~~~~~~~I~e~~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R   79 (101)
                      |+|||||||+|||||||.||| +|+.|.+++.++|+++ |||++|||+||+.+..  ++++|||||+++++++++.|.+|
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~-Dvy~~~Pw~Lp~~~~~--~~~~wyFft~~~~k~~~g~r~~R   91 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNR   91 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCE
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceec-cCCcCChhhccchhcc--CcceEEEEeeeccccCCCCcccc
Confidence            689999999999999999999 9999999999999999 9999999999987543  35789999999999999999999


Q ss_pred             cCCCCeeeeeccceeeecC
Q 037220           80 RTKAGHGKITSKDSQIKAR   98 (101)
Q Consensus        80 ~~~~G~Wk~~g~~~~I~~~   98 (101)
                      ++++|+||++|+++.|.++
T Consensus        92 ~~g~G~Wk~~g~~~~i~~~  110 (166)
T d1ut7a_          92 VAGSGYWKATGTDKIISTE  110 (166)
T ss_dssp             EETTEEEEEEEEEEEEEET
T ss_pred             ccCCCEecccCCCceEecC
Confidence            9999999999999998764