Citrus Sinensis ID: 037245

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHccHHHHHHHHcccHHHHHHHHHHcHHHHHHcccccccHHHHHHHcccHHHHHHHHHHccHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccHHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mtefgtdykeptmdqelpatmDHELLNVLrrgdehqirpIAGRMQNIFstmsprgntvLHMAIRFRNHKVIPEILRQQDSLLrkhnlkgetplhiaarvgdpAIVSTILNyvpaitngtesepesllritddegntplhnavrNKHENVVRMLVKkdriplgyinkaeqtplaiaiDSSLTDIACFiidqrpdsldhrlpEELTLLHSAVMRQNY
Flexible Loop (DISEMBL)
mtefgtdykeptmdqelpaTMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKgetplhiaarvgdpAIVSTILNYVPAITNGTESEPESLLRitddegntplhnavrnkhenvVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEeltllhsavmrqny
Low Complexity Region (SEG)
MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY
Disordered region (IsUnstruct)
*************************LNVLR****HQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITN************************VRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR************************
Disordered Region (DISOPRED)
MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY
Disordered Region (DISEMBL)
********KEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY
Disordered Region (DISPRO)
*****TDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHR*PEELTLLHSAVMRQNY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.548	0.225	0.286	2e-08
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.702	0.077	0.313	3e-08
Q1RJR6	273	Putative ankyrin repeat p	yes	no	0.818	0.644	0.225	6e-08
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.344	0.139	0.329	1e-07
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	no	0.697	0.034	0.309	1e-07
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.655	0.099	0.276	1e-07
Q94527	971	Nuclear factor NF-kappa-B	yes	no	0.637	0.141	0.281	1e-07
Q6P6B7	361	Ankyrin repeat domain-con	no	no	0.758	0.451	0.280	3e-07
Q495B1	522	Ankyrin repeat and death	no	no	0.613	0.252	0.296	2e-06
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.674	0.122	0.293	2e-06

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 11/129 (8%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A R  +  ++ +++ ++  ++ + + KG+T LH+A +  +  IV  ++     
Sbjct: 159 GKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME---- 214

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
             +G      SL+   D++GNTPLH AVR     +V+ ++K   +    +NK+ +T L I
Sbjct: 215 -ADG------SLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDI 267

Query: 175 AIDSSLTDI 183
           A  + L +I
Sbjct: 268 AEKTGLHEI 276

Arabidopsis thaliana (taxid: 3702)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 49  STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
           +T + RG T LHMA R    +V+   L Q  + +       +TPLHI+AR+G   IV  +
Sbjct: 443 NTTNVRGETALHMAARSGQAEVV-RYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQL 501

Query: 109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE 168
           L    +    T S            G TPLH A R  HE+V   L+      L    K  
Sbjct: 502 LQQGASPNAATTS------------GYTPLHLAAREGHEDVAAFLLDHG-ASLSITTKKG 548

Query: 169 QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
            TPL +A      ++A  ++ Q+  S D      LT LH A    N
Sbjct: 549 FTPLHVAAKYGKLEVASLLL-QKSASPDAAGKSGLTPLHVAAHYDN 593

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q1RJR6|Y317_RICBR Putative ankyrin repeat protein RBE_0317 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0317 PE=4 SV=1

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 7   DYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR 66
           D+   ++D ++    D ++   L   +E  I           +     GNT+LH AI   
Sbjct: 57  DFYSRSVDNKVIVNFDEDIFRYLINLEEFDI-----------NAEDKNGNTLLHAAIDQG 105

Query: 67  NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
             +V+  +   ++  +   +L G +PLH+A +  +P IV  +L+Y     N         
Sbjct: 106 KSEVVKFLTSYKNLEVNTKDLGGNSPLHLAIKSNNPEIVEMLLSYENINVNE-------- 157

Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACF 186
               D  G+T LH A+R+ +  ++ ML+ ++ I +   +   +TPL  A+ S+  +I   
Sbjct: 158 ---KDKYGDTTLHKAIRSYNHKIIEMLLLREEIDVNEKDNQGETPLHGAVKSNRPEIVKM 214

Query: 187 IIDQRPDSLDHRLPEELTLL 206
           ++  +  ++D +  E  + L
Sbjct: 215 LLSHK--NMDTKQKEIFSFL 232

Rickettsia bellii (strain RML369-C) (taxid: 336407)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query: 47  IFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVS 106
           I      +G T LHMA++ R+ +V+ EIL+   ++L + + KG T LHIA R   P I S
Sbjct: 188 IVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITS 247

Query: 107 TILNYVPAITNGTESEPESLLRITD 131
            +L +     N   ++ E+ + + D
Sbjct: 248 LLLTFTAIEVNAINNQKETAMDLAD 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 50  TMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
           T + RG T LHMA R    +V+   L Q  + +       +TPLHI+AR+G   IV  +L
Sbjct: 461 TTNVRGETALHMAARSGQAEVV-RYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLL 519

Query: 110 NYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQ 169
               +    T S            G TPLH + R  HE+V   L+      L    K   
Sbjct: 520 QQGASPNAATTS------------GYTPLHLSAREGHEDVAAFLLDHG-ASLSITTKKGF 566

Query: 170 TPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
           TPL +A      ++A  ++ Q+  S D      LT LH A    N
Sbjct: 567 TPLHVAAKYGKLEVANLLL-QKSASPDAAGKSGLTPLHVAAHYDN 610

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 51  MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN 110
           ++ +G + LH+ I  +N + IP  L ++ + +      G TPLH AA +G   I   +L 
Sbjct: 766 LTSKGFSALHLGIIGKNEE-IPFFLVEKGANVNDKTNSGVTPLHFAAGLGKANIFRLLL- 823

Query: 111 YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT 170
                + G + + E      D     P+H AV N H  +VR+L++KD   +   N   + 
Sbjct: 824 -----SRGADIKAE------DINSQMPIHEAVSNGHLEIVRILIEKDPSLMNVKNIRNEY 872

Query: 171 PLAIAIDSSLTDIACFII--DQRPDSLDHRLPEELTLLH 207
           P  +A++    DI  + +  D   + +DH      TLLH
Sbjct: 873 PFYLAVEKRYKDIFDYFVSKDANVNEVDHNGN---TLLH 908

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q94527|NFKB1_DROME Nuclear factor NF-kappa-B p110 subunit OS=Drosophila melanogaster GN=Rel PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 49  STMSPRGNTVLHMAIRF-RNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVST 107
           ST++  G++ LH+A +  R H + P +    +  L+  N  G TPLH+A +    + V +
Sbjct: 635 STLNADGDSALHVACQQDRAHYIRPLLGMGCNPNLK--NNAGNTPLHVAVKEEHLSCVES 692

Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA 167
            LN VP +        +  L +T+D+G TPLH A+R    +V + L+  DR  +   N  
Sbjct: 693 FLNGVPTV--------QLDLSLTNDDGLTPLHMAIRQNKYDVAKKLISYDRTSISVANTM 744

Query: 168 E-QTPLAIAIDSSLTDIACFIIDQRPDSL 195
           +    L +A+     ++   I+D + ++L
Sbjct: 745 DGNNALHMAVLEQSVELLVLILDAQNENL 773

Plays a key role in the humoral immune response. Rel-p68 subunit translocates to the nucleus where it binds to the promoter of the Cecropin A1 gene and probably other antimicrobial peptide genes. I-kappa-B kinase complex (ird5 and key) and PGRP-LC are essential signaling components in transmitting the lipopolysaccharide (LPS) signal leading to cact degradation for NF-kappa-B (rel) activation.

Drosophila melanogaster (taxid: 7227)

>sp|Q6P6B7|ANR16_HUMAN Ankyrin repeat domain-containing protein 16 OS=Homo sapiens GN=ANKRD16 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 26/189 (13%)

Query: 7   DYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR 66
           DYK P  +    A+M H             +R + GR   +   +     T L MA   +
Sbjct: 70  DYKRPLHE---AASMGHR----------DCVRYLLGRGAAV-DCLKKADWTPLMMACTRK 115

Query: 67  NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
           N  VI E++    + L K N  G    HIA+R GDP I+  +L   P        + ES 
Sbjct: 116 NLGVIQELVEHGANPLLK-NKDGWNSFHIASREGDPLILQYLLTVCPGAW-----KTESK 169

Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACF 186
           +R       TPLH A  + H   V++L+K+ +    Y +    T L  AI     D+A  
Sbjct: 170 IR------RTPLHTAAMHGHLEAVKVLLKRCQYEPDYRDNCGVTALMDAIQCGHIDVARL 223

Query: 187 IIDQRPDSL 195
           ++D+    L
Sbjct: 224 LLDEHGACL 232

Homo sapiens (taxid: 9606)

>sp|Q495B1|AKD1A_HUMAN Ankyrin repeat and death domain-containing protein 1A OS=Homo sapiens GN=ANKDD1A PE=2 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 23/155 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL---NY 111
           GNT LH+A   R H  + + L      L + N +G T LH AA    P  V  +L   + 
Sbjct: 192 GNTALHLAAG-RGHMAVLQRLVDIGLDLEEQNAEGLTALHSAAGGSHPDCVQLLLRAGST 250

Query: 112 VPAIT------------NGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRML 153
           V A+T            +G+E     L+       + D +G +PLH AVR+    +VR+L
Sbjct: 251 VNALTQKNLSCLHYAALSGSEDVSRVLIHAGGCANVVDHQGASPLHLAVRHNFPALVRLL 310

Query: 154 VKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
           +  D   +  ++  +QTPL +A + +  DIA  ++
Sbjct: 311 INSDS-DVNAVDNRQQTPLHLAAEHAWQDIADMLL 344

Homo sapiens (taxid: 9606)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 55   GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
            G T+LH A +  N  ++  +++ +  +  K N  GET LH AA  G+  +VS +      
Sbjct: 931  GETILHFAAKSGNLNLVNWLIKNKADIHAKTN-SGETILHFAAESGNLNLVSLL------ 983

Query: 115  ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
            I NGT+      +    D+G T LH AV + + N+V +L+ K  I +     + +T L  
Sbjct: 984  IHNGTD------INTKTDDGLTALHYAVESGNLNLVSLLIHKG-IDVNAKTNSGETILHF 1036

Query: 175  AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
            A+D    D+   ++ +  D ++ +  + LT LH AV   N
Sbjct: 1037 AVDLGSLDLVSLLMVRGAD-VNAKTDDGLTALHYAVESDN 1075

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
147790979	1398	hypothetical protein VITISV_003041 [Viti	0.795	0.122	0.370	2e-20
147865209	563	hypothetical protein VITISV_038601 [Viti	0.897	0.342	0.343	6e-20
147820412	624	hypothetical protein VITISV_004974 [Viti	0.753	0.259	0.389	2e-18
302143222	617	unnamed protein product [Vitis vinifera]	0.753	0.262	0.389	2e-18
255547566	581	ankyrin repeat-containing protein, putat	0.893	0.330	0.306	2e-18
147799695	595	hypothetical protein VITISV_033922 [Viti	0.646	0.233	0.372	4e-18
147852485	625	hypothetical protein VITISV_042249 [Viti	0.855	0.294	0.317	2e-17
297745183	270	unnamed protein product [Vitis vinifera]	0.762	0.607	0.359	2e-17
224117416	451	predicted protein [Populus trichocarpa]	0.893	0.425	0.324	2e-17
224109440	577	predicted protein [Populus trichocarpa]	0.893	0.332	0.314	4e-17

>gi|147790979|emb|CAN70274.1| hypothetical protein VITISV_003041 [Vitis vinifera]

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 36  QIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD--SLLRKHNLKGETPL 93
           ++  I  R  ++   ++P  NTVLH+A +F   + +  IL Q    SLL++ N  GETP+
Sbjct: 51  EVSDILKRFHDLGDKLTPMENTVLHIAAQFGEQERVQLILEQPSGSSLLQRINKLGETPV 110

Query: 94  HIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 153
           H+AAR G        LN V A+ +  E+E    LR+ + EG+T LH AVR  H  VVR+L
Sbjct: 111 HLAAREGH-------LNVVQALIDA-ETERVEFLRMKNQEGDTALHEAVRYHHPKVVRLL 162

Query: 154 VKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ 213
           ++KD       N    TPL +A +    D+   I+D R  S DHR     T LH+AV+ +
Sbjct: 163 IEKDTEFTYGPNDKGNTPLYMAAERGFDDLVNIILDNRRSSPDHRGLMGRTALHAAVISK 222

Query: 214 N 214
           +
Sbjct: 223 H 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865209|emb|CAN79828.1| hypothetical protein VITISV_038601 [Vitis vinifera]

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 21  MDHELLNVLRRGD-EHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD 79
           MD +L      G  ++ +R I     ++   ++P  NTVLH+A +F   K +  IL++  
Sbjct: 35  MDPQLYKAAAGGKTKYDLRZILKNFXDLGDELTPMENTVLHIAAQFGKQKCVDLILKEHS 94

Query: 80  --SLLRKHNLKGETPLHIAARVGDPAIVSTILNYV------PA-ITNGTESEPESLLRIT 130
             SLLR+ N  G+TPLH+AAR G   +V  +++        P+ I NG E   E +LR  
Sbjct: 95  DSSLLRRVNKHGDTPLHLAAREGYQKVVEALIHAAKPQPPQPSDIENGVEFH-EGMLRTM 153

Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
           + EG+T LH AVR +H  VV++L+K+D       N    TPL +A +    D+   I++ 
Sbjct: 154 NQEGDTALHEAVRYRHPKVVKLLIKEDAKFTYGPNHKGNTPLYMAAERGFDDLVDIILEN 213

Query: 191 RPDSLDHRLPEELTLLHSAVMRQN 214
              S DHR  +  T LH+AV+ ++
Sbjct: 214 SVTSSDHRGLKGRTALHAAVISKH 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 52  SPRGNTVLHMAIRFRNHKVIPEILRQQD--SLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
           S R NT LH+A R  N K++  +L +    SLL + N K ETPLHIAAR G   +V  ++
Sbjct: 42  SHRKNTALHIAARVGNKKMVEALLSEGTPASLLTE-NSKHETPLHIAARSGHVHVVKFLI 100

Query: 110 NYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYINKAE 168
           ++    T+      + +LR+ + EGNTPLH AVRN H + V +LV+  D   L  +N A 
Sbjct: 101 DWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAG 160

Query: 169 QTPLAIAIDSSLTDIACFII-DQRPDSLDHRLPEELTLLHSAVMRQN 214
           ++PL +A+D   ++I   I+ +  P SL HR  +  T+LH A++R +
Sbjct: 161 ESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRAD 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 52  SPRGNTVLHMAIRFRNHKVIPEILRQQD--SLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
           S R NT LH+A R  N K++  +L +    SLL + N K ETPLHIAAR G   +V  ++
Sbjct: 42  SHRKNTALHIAARVGNKKMVEALLSEGTPASLLTE-NSKHETPLHIAARSGHVHVVKFLI 100

Query: 110 NYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYINKAE 168
           ++    T+      + +LR+ + EGNTPLH AVRN H + V +LV+  D   L  +N A 
Sbjct: 101 DWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAG 160

Query: 169 QTPLAIAIDSSLTDIACFII-DQRPDSLDHRLPEELTLLHSAVMRQN 214
           ++PL +A+D   ++I   I+ +  P SL HR  +  T+LH A++R +
Sbjct: 161 ESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRAD 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547566|ref|XP_002514840.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223545891|gb|EEF47394.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 21  MDHELLNVLRRGDEHQIRPIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD 79
           MD  L   +  GD +    + G+    +F   + + NT+LH+A +    +V   ++    
Sbjct: 1   MDPSLYQAITSGDLNCFDNLIGKNASKLFQVTADQENTILHVAAKLETLQVAERVIGLCP 60

Query: 80  SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLH 139
           SLL K N  G++PLHIAAR+G   +   ++N    +    E E   LLR+ + + +T LH
Sbjct: 61  SLLHKPNYNGDSPLHIAARLGRVRMCRLLINCADLLEVEVEKE---LLRMQNLDHDTALH 117

Query: 140 NAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL 199
           +AVRN H   VR+L+++D      INKA ++PL +A+D    +I+  I+   P     + 
Sbjct: 118 DAVRNGHFETVRLLIQQDSQLTRVINKAGESPLFLAVDRRSYEISQHILQAAPAVCSFKG 177

Query: 200 PEELTLLHSAVMRQNY 215
              + +LH+A++R ++
Sbjct: 178 RNSMNVLHAAIIRADF 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799695|emb|CAN77325.1| hypothetical protein VITISV_033922 [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 14/153 (9%)

Query: 73  EILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDD 132
           E +R    LL + N+KG+TPLH A+R G P +V   ++   A+ +  E+ P +LLR+ + 
Sbjct: 35  EAIRLNPELLSEANMKGDTPLHTASRTGCPRMVELFISCSEALCDDIENAPRNLLRMVNQ 94

Query: 133 EGNTPLHNAVRNK-------------HENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS 179
           EG+T LH AVRN              H +VV++LVK D   L   NKA ++PL +A++  
Sbjct: 95  EGDTALHVAVRNGHLDTALHAAVKYDHLDVVKLLVKADIELLHMDNKANESPLYLAVERG 154

Query: 180 LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR 212
           L D   +++++ P    HR  + LT LH+AV+R
Sbjct: 155 LFDFTKYMLNKCPKC-SHRGTKGLTALHAAVVR 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852485|emb|CAN80653.1| hypothetical protein VITISV_042249 [Vitis vinifera]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 31  RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD--SLLRKHNLK 88
           R  ++ +  I  +  ++   ++P  NTVLH+A +F   K +  IL++    SLLR+ N  
Sbjct: 46  RKTKYGLGEILKKFHDLGDELTPMENTVLHIAAQFGKQKCVNLILKEHSDSSLLRRVNEH 105

Query: 89  GETPLHIAARVGDPAIVSTILNYV------PAITNGTESEPESLLRITDDEGNTPLHNAV 142
           G+TPLH+AAR G   +V  +++        P+         + +LR  + EG+T LH AV
Sbjct: 106 GDTPLHLAAREGYQKVVEALIHAAKPQPPQPSDIESGVKFHQGMLRTMNREGDTALHEAV 165

Query: 143 RNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEE 202
           R +H  VV++L+K+D +     N    TPL +A +    D+   I++    S DHR  + 
Sbjct: 166 RYRHPKVVKLLIKEDPMFTYGPNHKGNTPLYMAAERGFDDLVDIILENFVTSPDHRGLKG 225

Query: 203 LTLLHSAVMRQN 214
            T LH+AV+ ++
Sbjct: 226 RTALHAAVISKH 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745183|emb|CBI39175.3| unnamed protein product [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 51  MSPRGNTVLHMAIRFRNHKVIPEIL--RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
           ++P+ NT+LH+A +F     +  IL  R   SLL + NLKG+TPLH+AAR G   +   +
Sbjct: 100 LTPKRNTILHIAAQFGQIDCVNWILQFRPLSSLLLQPNLKGDTPLHLAAREGYWMVTQAL 159

Query: 109 LNYVPAITNGTE-SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA 167
           +    A+ +G+     + +LR+T++E +T LH AVR  H NVV++L+ KD   +   N +
Sbjct: 160 IEAAKALPSGSGIGADKMMLRMTNNENDTALHEAVRYNHSNVVKLLILKDPDFIYGANFS 219

Query: 168 EQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
             TPL +A +    ++   IID    S  H      T LH+AV+  N
Sbjct: 220 GGTPLYMAAERGFHELVQIIIDNTRTSPAHSGLTGRTALHAAVICNN 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117416|ref|XP_002317569.1| predicted protein [Populus trichocarpa] gi|222860634|gb|EEE98181.1| predicted protein [Populus trichocarpa]

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 21  MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
           MD  L  V++ G+ + +  +      + + ++P+GNT LH+A++F +  V+ EI  +  S
Sbjct: 1   MDSRLYRVVKSGNVYILLQLLNEKPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRS 60

Query: 81  LLRKHNLKGETPLHIAARVGDPAIVSTI----LNYVPAITNGTESEPESLLRITDDEGNT 136
           LL + N  G++PLH+AAR G  +IV  +    L+     T   ++    +LR  ++E NT
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFDILRQGNNENNT 120

Query: 137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD 196
            LH AVRN + +VV++L++ D     + N A ++PL +A      DI   I+   P S  
Sbjct: 121 VLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPAS-A 179

Query: 197 HRLPEELTLLHSAVMRQ 213
           H   E  T LH+AV+ +
Sbjct: 180 HGGSEGQTALHAAVIER 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109440|ref|XP_002333254.1| predicted protein [Populus trichocarpa] gi|222835818|gb|EEE74253.1| predicted protein [Populus trichocarpa]

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 21  MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
           MD  L  V + G+ + +  +      + + ++P+GNT LH+A++F +  V+ EI  +  S
Sbjct: 1   MDSRLYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCGS 60

Query: 81  LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAI----TNGTESEPESLLRITDDEGNT 136
           LL + N  G++PLH+AAR G  +IV  ++  + A     T   ++    +LR  ++E NT
Sbjct: 61  LLTRPNSSGDSPLHVAARCGHFSIVDFLVKEILAAKRISTENGKTGKFDILRQGNNENNT 120

Query: 137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD 196
            LH AVRN + +VV++L++ D     + N A ++PL +A      ++   I+   P S  
Sbjct: 121 VLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKNLLNQILISTPAS-A 179

Query: 197 HRLPEELTLLHSAVMRQ 213
           H   E  T LH+AV+ +
Sbjct: 180 HGGSEGQTALHAAVIER 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.758	0.240	0.266	4.5e-12
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.906	0.304	0.268	5e-11
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.897	0.313	0.253	6e-11
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.879	0.272	0.264	1.2e-10
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.883	0.332	0.248	3.7e-10
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.706	0.284	0.298	2.1e-09
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.511	0.175	0.347	5.8e-09
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.865	0.272	0.255	6.6e-09
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.255	0.095	0.436	9e-09
ZFIN|ZDB-GENE-060621-2	3888	ank3b "ankyrin 3b" [Danio reri	0.693	0.038	0.321	1.2e-08

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 44/165 (26%), Positives = 82/165 (49%)

Query:    21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
             M  + +  +R GDE  +R +   +    S+++  GNT+LH+A    +  ++  IL     
Sbjct:    97 MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNAYPG 156

Query:    81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHN 140
             LL K N  GE  LH+AA  G  A+V  +++++  I+       + +    D   +  LH 
Sbjct:   157 LLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNALHV 216

Query:   141 AVRNKHENVVRMLVKKDRIPLGYI-NKAEQTPLAIAIDSSLTDIA 184
             +++ KH  V   LV  ++  L ++ N    +PL +A+++   D+A
Sbjct:   217 SLKRKHLKVASCLVCAEQ-SLSFVANNDGVSPLYLAVEAGQADLA 260

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 54/201 (26%), Positives = 98/201 (48%)

Query:    20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTM-SPRGNTVLHMAIRFRNHKVIPEILRQQ 78
             +M+ E+ + +R G+   +  +        +   +  G+  LH+A  +   +++  I+ + 
Sbjct:    35 SMNPEIFSAMRAGNVKFLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLELVKRIVSEC 94

Query:    79 DSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNG-TESEPE--SLLRITDDEGN 135
               LL + N K + PLH AA  G  A+V   +  V  I++G +E E E  +L  + D +GN
Sbjct:    95 PCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYAMKDIDGN 154

Query:   136 TPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS-SLTDI-ACFIIDQRPD 193
             T LH A++  H      LVK + +     N    +PL  AI + SLT + A   +  +  
Sbjct:   155 TALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMMYVPGQTC 214

Query:   194 SLDHRLPEELTLLHSAVMRQN 214
             +L  +L    +L+H+A+  +N
Sbjct:   215 NLASKLEGRKSLVHAALKAKN 235

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 52/205 (25%), Positives = 102/205 (49%)

Query:    14 DQELPATMDHELLNVLRRGDEHQI-RPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIP 72
             D++    M+  +L  +R GD+  + + I   ++     +  +GN++LH+A    +  ++ 
Sbjct:    30 DKDESEIMNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHIAAALGHVHIVE 89

Query:    73 EILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEP-ESLLRITD 131
              I+    +LL+  NL GET LH+AAR G   IV  ++ ++      TES   ++ +    
Sbjct:    90 FIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFI------TESSSYDAFIAAKS 143

Query:   132 DEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
               G+T LH A++ KH  V   LV  K  +     N  E +PL +A+++   ++   +++ 
Sbjct:   144 KNGDTALHAALKGKHVEVAFCLVSVKHDVSFDK-NNDEASPLYMAVEAGYHELVLKMLES 202

Query:   191 RPD-SLDHRLPEELTLLHSAVMRQN 214
                 S+   +    +++H+A M+ N
Sbjct:   203 SSSPSILASMFSGKSVIHAA-MKAN 226

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 54/204 (26%), Positives = 102/204 (50%)

Query:    24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
             E+ + +  G++  +  +  R  ++    S  G+++LH+A+ + + +++ EI+ +   LL 
Sbjct:   101 EVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLL 160

Query:    84 KHNLKGETPLHIAARVGDPAIVST---ILNYVPAITNGTESEPESLLRITDDEGNTPLHN 140
             + N  G+TPLH+AA  G   IV     ++ +  A     ESE  +   + D +GNT L+ 
Sbjct:   161 EQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYY 220

Query:   141 AVRNKHENVVRMLVKKDR-IP-LGYINKAEQTPLAIAI---DSSLTDIACFIIDQRP--- 192
             A+  ++  +   LV  ++  P LG  NK   + L +AI   D SL      II  +    
Sbjct:   221 AIEGRYFEMAVCLVNANQDAPFLG--NKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKG 278

Query:   193 --DSLDHRLPEELTLLHSAVMRQN 214
                +L+ +L  + +L H A++ Q+
Sbjct:   279 KKSNLESKLQGQKSLAHVALVTQS 302

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 50/201 (24%), Positives = 95/201 (47%)

Query:    21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
             M+ E+ + L  GD+  +  + G    +    S RG++VLH+A R+ + +++  I+ +   
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHLAARWGHLELVKNIISECPC 140

Query:    81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR---ITDDEGNTP 137
             L+ + N K + PLH+AA  G  AIV  ++  V   ++    E    L    + D  GNT 
Sbjct:   141 LVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVLRDKYGNTA 200

Query:   138 LHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII--------D 189
             LH A+  ++  +   LV +++      N    + L +A+++    +   I+        +
Sbjct:   201 LHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILKTAGNNDLE 260

Query:   190 QRPDSLDHRLPEELTLLHSAV 210
              R  +LD +L     L+H A+
Sbjct:   261 GRNSNLDSKLEGRKHLVHVAL 281

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 49/164 (29%), Positives = 83/164 (50%)

Query:    55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL-NYVP 113
             G T LH+A++  N +++ +I+    SL+   N K +TPLH+AAR+G  +I+  +L +   
Sbjct:    27 GGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAE 86

Query:   114 AITNGTESEPESL--LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP 171
             +I +  E+ P  L    + + +G TPLH AV N     +   + K   PL + +   QT 
Sbjct:    87 SIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINK--APLSFDSVTLQTS 144

Query:   172 LAIA-IDSSLTDIACFIIDQRPDSLDHRLPEEL-----TLLHSA 209
               +  + +    +  FI   +  +L  RL  EL     T+LH+A
Sbjct:   145 ETVFHLAARHKKMEAFIFMAKNANL-RRLLYELDGEGNTVLHAA 187

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 42/121 (34%), Positives = 60/121 (49%)

Query:    55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             G T LH A R  + +V+  ++    S+  + + KG+T LH+A +  +  IV  ++   PA
Sbjct:   256 GKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPA 315

Query:   115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
             I           L + D +GNTPLH A       +VR LV  D I L  +NKA  T L I
Sbjct:   316 I-----------LSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDI 364

Query:   175 A 175
             A
Sbjct:   365 A 365

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 50/196 (25%), Positives = 94/196 (47%)

Query:    21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
             M+ E+L+ L  G+E  +  +      +    + RG++VLH+A  + + +++  I+ +   
Sbjct:    87 MNAEMLSTL--GNEEWLEKLRSHGTPLTCLKNDRGDSVLHLAATWSHLELVKNIVSECSC 144

Query:    81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR---ITDDEGNTP 137
             LL + N K + PLH+AAR+G  A+V  ++  V   +     E   +L    + D  G+T 
Sbjct:   145 LLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPYLLKDINGDTA 204

Query:   138 LHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI---DSSLTDIACFIIDQRPDS 194
             L+ A++  +  V   LV  +R       K   +PL +A+   D+SL  +   + +  P  
Sbjct:   205 LNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASL--VKAMLGNDGPQR 262

Query:   195 LDHRLPEELTLLHSAV 210
              +  L     L H+A+
Sbjct:   263 KNLNLEGRKYLAHAAL 278

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query:    55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
             G TVLH+A    + +++  I++   SL+   NL G+TPLH AAR G   IV+ IL
Sbjct:    54 GGTVLHLATELGHKEIVEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQIL 108

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060621-2 ank3b "ankyrin 3b" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 54/168 (32%), Positives = 80/168 (47%)

Query:    49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
             +TM+ RG T LHMA R     V+  ++     +  K     +TPLHI++R+G P IV  +
Sbjct:   423 NTMNVRGETALHMAARAGQANVVKFLVANGADVDAKAK-DDQTPLHISSRLGKPDIVQQL 481

Query:   109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE 168
             L +  A+       P+S    T   G TPLH A R+ H++V  +L+      LG   K  
Sbjct:   482 LQH-GAL-------PDS----TTTSGYTPLHLAARDGHKDVASILLDNGA-SLGITTKKG 528

Query:   169 QTPLAIAIDSSLTDIACFIIDQR--PDSLDHRLPEELTLLHSAVMRQN 214
              TPL +A      ++A  ++ +R  PD+        LT LH A    N
Sbjct:   529 FTPLHVAAKYGKMEVANLLLQKRAPPDAAGK---SGLTPLHVAAHYDN 573

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-05
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	6e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 14/130 (10%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A    + +V+ ++L +  + +   +  G TPLH+AA+ G   IV  +L     
Sbjct: 7   GRTPLHLAASNGHLEVV-KLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +               D +GNTPLH A RN + +VV++L+K         +K  +TPL +
Sbjct: 66  V------------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHL 112

Query: 175 AIDSSLTDIA 184
           A  +   ++ 
Sbjct: 113 AAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 85  HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
            +  G TPLH+AA  G   +V  +L     +               D++G TPLH A +N
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVN------------AKDNDGRTPLHLAAKN 50

Query: 145 KHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELT 204
            H  +V++L++K        +K   TPL +A  +   D+   ++      ++ R  +  T
Sbjct: 51  GHLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRT 108

Query: 205 LLHSAVMRQN 214
            LH A    +
Sbjct: 109 PLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
            G T LH+A +  + +++  +L +   +  + +  G TPLH+AAR G+  +V  +L +  
Sbjct: 39  DGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGA 97

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 154
            +               D +G TPLH A +N H  VV++L+
Sbjct: 98  DVN------------ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 59  LHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNG 118
           LH+A +  N +++  +L +   +        +T LH+AAR G+  IV  +L +   +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
                       D +GNT LH A RN +  +V++L++  
Sbjct: 57  -----------KDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
             D++G TPLH A  N H  VV++L++         +   +TPL +A  +   +I   ++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 189 DQRPDSLDHRLPEELTLLHSAVMRQNY 215
           ++  D ++ R  +  T LH A    N 
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 93  LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM 152
           LH+AA+ G+  +V  +L     +  G                +T LH A RN +  +V++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--------------DTALHLAARNGNLEIVKL 46

Query: 153 LVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
           L++     +   +K   T L +A  +   +I   +++   D
Sbjct: 47  LLEHG-ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 18/152 (11%)

Query: 54  RGNTVLHMAIRFR-NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP--AIVSTILN 110
            G T L  AI  + N   I E L    + +   N  GE  LH+          I+  +++
Sbjct: 105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID 164

Query: 111 Y---VPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL 161
               + A           LL       I D  G TPLH AV N +   V+ L+       
Sbjct: 165 KGVDINAKNR-----VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANP 218

Query: 162 GYINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
             +NK   TPL IAI ++  +I   +++  P 
Sbjct: 219 NLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           + N  L +A+          +    D  L   +L G  PLH AA  GD  IV  +L    
Sbjct: 38  KLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLL---- 93

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN-----VVRMLVKK--DRIPLGYINK 166
                      + +   D +G+TPLH A  N +       V ++L++   D       ++
Sbjct: 94  --------ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 167 AEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
              TPL  A  +   DI   +++   D  + R    +T L  A     
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGR 192

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 91  TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
           T LH AA  G   +V  +L     I              TD++GNT LH A  N +  V+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN------------RTDEDGNTALHIAAENGNLEVL 50

Query: 151 RMLV 154
           ++L+
Sbjct: 51  KLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 56  NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
           +T LH+A R  N +++ ++L +  + +   +  G T LH+AAR G+  IV  +L +
Sbjct: 29  DTALHLAARNGNLEIV-KLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G   +H+AI+     +I ++L ++ +     +  GE+PLH AA  GD A +  ++++   
Sbjct: 157 GCYPIHIAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           I N  ++            G TPLHNA+ + + + + +L+    I    I+ +  TPL  
Sbjct: 216 IMNKCKN------------GFTPLHNAIIH-NRSAIELLINNASINDQDIDGS--TPLHH 260

Query: 175 AID 177
           AI+
Sbjct: 261 AIN 263

Length = 434

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 45  QNIFSTMSP--RGNTVLHMAIR---------FRNHKVIPEILRQQDSLLRKHNLKGETPL 93
           + I     P   G  +LH   R         F+N      I  +   L+ ++N  G+  +
Sbjct: 5   EEIIFASEPDIEGENILHYLCRNGGVTDLLAFKN-----AISDENRYLVLEYNRHGKQCV 59

Query: 94  HIAARVG--DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 151
           HI +     DP     +L    A  NG E             GNTPLH AV  ++  +  
Sbjct: 60  HIVSNPDKADPQEKLKLLMEWGADINGKERV----------FGNTPLHIAVYTQNYELAT 109

Query: 152 MLVKKDRIPLGYINKAEQTPLAIAID 177
            L  +  + +  +N A +TP  +A +
Sbjct: 110 WLCNQPGVNMEILNYAFKTPYYVACE 135

Length = 154

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
            L  TD  GNTPLH A +     +V+ L+K   + L   +    T L +A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 23/111 (20%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKH---------NLKGETPLHIAARVGDPAIV 105
           G+T LH+A    N       +     LL            +  G TPLH AA  GD  IV
Sbjct: 106 GDTPLHLAALNGNPPEGN--IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 106 STILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             +L                     +  G T L  A +N    +V++L+ K
Sbjct: 164 ELLLEAGADPN------------SRNSYGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 133 EGNTPLHNAVRNKHENVVRMLVKK 156
           +GNTPLH A RN H  VV++L++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 81  LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHN 140
            L   +  G+  +HIAA   +  + + I++++  I  G +   + +L     EG+T LH 
Sbjct: 52  ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHL--IELGADINAQEML-----EGDTALHL 104

Query: 141 AVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS 178
           A   +  ++   L  +  I L + N   ++P  +AID+
Sbjct: 105 AAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN 142

Length = 169

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G++ L+ AI   N +++  +L   ++   K+ L+ E PLH AA + D  IV  +L     
Sbjct: 30  GHSALYYAIADNNVRLVCTLL---NAGALKNLLENEFPLHQAATLEDTKIVKILL----- 81

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
            +   +S+        DD+GNT L+ AV + +   V++ VKK+   + Y     +T    
Sbjct: 82  FSGMDDSQ-------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH 134

Query: 175 AIDSSLTDIACFIIDQRPDSLD 196
           A+  +   I  + + + P + D
Sbjct: 135 AVMLNDVSIVSYFLSEIPSTFD 156

Length = 284

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIV 105
           G T LH A      +++ + L ++   + + +  G T LHIAA  G+  ++
Sbjct: 1   GRTALHKAAISGRLELV-KYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 56  NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA-ARVGDPAIVSTILNYVPA 114
           N+ LH A++  N  ++  IL +  +     +  G TPLHI+     D  I+  +L +   
Sbjct: 202 NSPLHHAVKHYNKPIV-HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH--- 257

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
              G +   +S +      G T LH+++++  E  +++L++        +N  + TPL+ 
Sbjct: 258 ---GVDVNAKSYIL-----GLTALHSSIKS--ERKLKLLLEYGADI-NSLNSYKLTPLSS 306

Query: 175 AI 176
           A+
Sbjct: 307 AV 308

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 133 EGNTPLHNAVRNKHENVVRMLVKKD 157
           +G TPLH A  N +  VV++L+ K 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKG 25

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02741	169	hypothetical protein; Provisional	99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.66
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.62
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.56
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.14
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.03
PF13606	30	Ank_3: Ankyrin repeat	99.02
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.98
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.97
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.97
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.95
PF13606	30	Ank_3: Ankyrin repeat	98.94
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.87
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.81
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.78
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.76
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.72
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.55
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.44
KOG0511	516	consensus Ankyrin repeat protein [General function	98.34
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.31
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.17
KOG0511	516	consensus Ankyrin repeat protein [General function	98.16
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.1
KOG2384	223	consensus Major histocompatibility complex protein	98.09
KOG2384	223	consensus Major histocompatibility complex protein	98.07
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.22
KOG2505	591	consensus Ankyrin repeat protein [General function	97.13
KOG2505	591	consensus Ankyrin repeat protein [General function	96.89
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.88
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.64
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.37
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.63
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.62
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.57

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-39  Score=209.93  Aligned_cols=183  Identities=24%  Similarity=0.256  Sum_probs=164.0

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhc-ccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE   90 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~   90 (215)
                      ++...+..++.+|||+||..|+.+++++|++. +..+ +.+|..|+||||.|+..|+.++|+.|+.+.+++++..+..|+
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~  107 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQ  107 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCc
Confidence            34445555566779999999999999999964 4445 788999999999999999999999999887999999999999


Q ss_pred             CHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCc
Q 037245           91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT  170 (215)
Q Consensus        91 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  170 (215)
                      |+||+|+..|+.+++++|+++|+.+            +.+|+.|.||||.|+.-|.++++++|+..++.. +..|..|+|
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i------------~~kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~T  174 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALI------------RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFT  174 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCC------------cccccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCcc
Confidence            9999999999999999999999774            478999999999999999999999999999776 899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          171 PLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       171 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      |||.|..-|+.+....|+++| ++..+.|+.| ||+..|+
T Consensus       175 pL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  175 PLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHH
Confidence            999998888999999999999 9999999988 9988775

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-38  Score=205.56  Aligned_cols=177  Identities=24%  Similarity=0.291  Sum_probs=158.9

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccC-CCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMS-PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      ++.+.++.......++.++...+..++.++ .+|+|||||||..|+.+++.+|++.....++.+|..|+||||+|+..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            346677777777788888888874445555 4999999999999999999999987777888899999999999999999


Q ss_pred             HHHHHHHHhh-cccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          102 PAIVSTILNY-VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       102 ~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      .++|+.|+.+ |++            +|..+..|.||||+|+..|..+++++|+++|+.+ +.+|..|.||||-|+..|.
T Consensus        85 ~evVk~Ll~r~~ad------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGk  151 (226)
T KOG4412|consen   85 DEVVKELLNRSGAD------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGK  151 (226)
T ss_pred             HHHHHHHhcCCCCC------------cceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccc
Confidence            9999999998 666            5578899999999999999999999999999887 7899999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          181 TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       181 ~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      .+++++|+..| +.+|.+|..|+||||.|...|
T Consensus       152 lkvie~Li~~~-a~~n~qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  152 LKVIEYLISQG-APLNTQDKYGFTPLHHALAEG  183 (226)
T ss_pred             hhhHHHHHhcC-CCCCcccccCccHHHHHHhcc
Confidence            99999999999 999999999999999995443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.8e-36  Score=216.67  Aligned_cols=176  Identities=14%  Similarity=0.124  Sum_probs=156.2

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ..+.+|||+|+..|+.+++++|++.++++ +..+  +.||||+|+..|+.+++++|+ ..+++++.++..|.||||+|+.
T Consensus        28 ~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~d--~~TpLh~Aa~~g~~eiV~lLL-~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         28 VHGHSALYYAIADNNVRLVCTLLNAGALK-NLLE--NEFPLHQAATLEDTKIVKILL-FSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCCC--CCCHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHH
Confidence            34556799999999999999999999987 5543  689999999999999999999 5778889999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCC-cHHHHHHhcCCHHHHHHHHHcCCCCccccc-cCCCcHHHHHH
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGN-TPLHNAVRNKHENVVRMLVKKDRIPLGYIN-KAEQTPLAIAI  176 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~  176 (215)
                      .|+.+++++|+++|+++.            ..+..|+ ||||+|+..++.+++++|+++++..   .+ ..|.||||+|+
T Consensus       104 ~g~~eivk~Ll~~gadin------------~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa  168 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLM------------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITI  168 (284)
T ss_pred             cCCHHHHHHHHHCCCCcC------------ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHH
Confidence            999999999999998843            4666664 8999999999999999999987643   22 35899999999


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCccCccH-HHHHHHhCC
Q 037245          177 DSSLTDIACFIIDQRPDSLDHRLPEELTL-LHSAVMRQN  214 (215)
Q Consensus       177 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~-l~~A~~~~~  214 (215)
                      +.|+.+++++|+++| ++++.++..|.|| ||+|+..|+
T Consensus       169 ~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        169 KNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             HcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCC
Confidence            999999999999999 9999999999987 999999886

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=222.26  Aligned_cols=179  Identities=18%  Similarity=0.159  Sum_probs=143.4

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||.|+..|+.+++++|+++|+++ +..+..+.||||.|+..|+.+++++|++.+....+..+..|.||||+|+..|
T Consensus        35 g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~  113 (413)
T PHA02875         35 GISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK  113 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhC
Confidence            455688888888888888888888877 6667778888888888888888888886554444455667888888888888


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..|+.+++++|+++|++. +.++..|.||||+|+..|+
T Consensus       114 ~~~iv~~Ll~~gad~------------~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        114 KLDIMKLLIARGADP------------DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             CHHHHHHHHhCCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            888888888888774            356778888888888888888888888888876 6788888888888888888


Q ss_pred             HHHHHHHHHhCCCCccccCccCc-cHHHHHHHhCC
Q 037245          181 TDIACFIIDQRPDSLDHRLPEEL-TLLHSAVMRQN  214 (215)
Q Consensus       181 ~~~~~~Ll~~g~~~~~~~~~~g~-t~l~~A~~~~~  214 (215)
                      .+++++|+++| ++++..+..|. ||+|+|+..|+
T Consensus       181 ~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~  214 (413)
T PHA02875        181 IAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNK  214 (413)
T ss_pred             HHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCC
Confidence            88888888888 88888877664 78888888775

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=3.4e-34  Score=217.69  Aligned_cols=176  Identities=24%  Similarity=0.271  Sum_probs=160.4

Q ss_pred             HHHHHHHcCChHHHHHHHhc-ccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccC-CCCCCHHHHHHHhCC
Q 037245           24 ELLNVLRRGDEHQIRPIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHN-LKGETPLHIAARVGD  101 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~~~  101 (215)
                      .++.|+..|+.+.++.+++. +.++ +..|.+|.|+||||+.+++++++++|+ .+++++|..+ .-+.||||+|+++|+
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li-~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLI-SHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHH-HcCCCccccCCCCCCCcchHHHHcCc
Confidence            48899999999999999998 8887 888999999999999999999999999 5677778776 678899999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      ..++.+|+++||++.            .+|.+|.+|+|.|++.+++-.+-+++..++++ +.+|.+|+||||+|+.+|..
T Consensus       125 ~~vv~lLlqhGAdpt------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPT------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             HHHHHHHHHcCCCCc------------eecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhccc
Confidence            999999999998854            78999999999999999999999999999776 89999999999999999998


Q ss_pred             HHHHHHHHhCCCCccccC-ccCccHHHHHHHhCCC
Q 037245          182 DIACFIIDQRPDSLDHRL-PEELTLLHSAVMRQNY  215 (215)
Q Consensus       182 ~~~~~Ll~~g~~~~~~~~-~~g~t~l~~A~~~~~~  215 (215)
                      ..+..|++.| +.+..+| ..|.||||+|+..||.
T Consensus       192 ~~v~~LL~f~-a~~~~~d~~~g~TpLHwa~~~gN~  225 (600)
T KOG0509|consen  192 LFVRRLLKFG-ASLLLTDDNHGNTPLHWAVVGGNL  225 (600)
T ss_pred             HHHHHHHHhc-ccccccccccCCchHHHHHhcCCc
Confidence            8899999999 8888887 8999999999999874

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=219.27  Aligned_cols=179  Identities=20%  Similarity=0.342  Sum_probs=157.0

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhc---------------------
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQ---------------------   78 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~---------------------   78 (215)
                      .+.+|||.|+..|+.+++++|+++|+++ +..+..|.||||.|+..|+.+++++|++.+                     
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            3456799999999999999999999998 888999999999999999999999998532                     


Q ss_pred             -cccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 037245           79 -DSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD  157 (215)
Q Consensus        79 -~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  157 (215)
                       +.+++.++..|.||||+|+..|+.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~------------n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV------------NIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC------------CCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence             2345667889999999999999999999999999874            367888999999999999999999999999


Q ss_pred             CCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          158 RIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       158 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      +.. +..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||.|+..+
T Consensus       181 ~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        181 AYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHCC
Confidence            886 678889999999999999999999999999 777777777777777777654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-33  Score=217.11  Aligned_cols=177  Identities=21%  Similarity=0.236  Sum_probs=152.7

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      .+|+.|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|+ ..++.++.++..+.||||.|+..|+.
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLM-KHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccCCCcccHHHHHHHCCCH
Confidence            4689999999999999999999888 777888999999999999999999988 55666777778888999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHH
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTD  182 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  182 (215)
                      ++++.|++.|+....           ..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..|+.+
T Consensus        82 ~~v~~Ll~~~~~~~~-----------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         82 KAVEELLDLGKFADD-----------VFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             HHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHH
Confidence            999999988865432           34567889999999999999999999999887 678888999999999999999


Q ss_pred             HHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          183 IACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       183 ~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++++|+++| ++++.++..|.||||+|+..|+
T Consensus       150 ~v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        150 GIELLIDHK-ACLDIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             HHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCC
Confidence            999999999 8889899999999999998876

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-33  Score=195.79  Aligned_cols=179  Identities=13%  Similarity=0.106  Sum_probs=156.0

Q ss_pred             chhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcC--CcchHHHHHHhccccccccC-CCCCCHH
Q 037245           17 LPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRQQDSLLRKHN-LKGETPL   93 (215)
Q Consensus        17 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~ll~~~~~~~~~~~-~~g~t~l   93 (215)
                      -.+...+||+.|+..|+.+.++.|++.   . +..+..|.||||+|+..+  +.+++++|+ +.+++++.++ ..|.|||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~---~-n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF---V-NDCNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh---h-hccCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHH
Confidence            345556789999999999999999976   3 556889999999999854  889999999 5677888886 5899999


Q ss_pred             HHHHHh---CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCCccccccCC
Q 037245           94 HIAARV---GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR--NKHENVVRMLVKKDRIPLGYINKAE  168 (215)
Q Consensus        94 ~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~  168 (215)
                      |+|+..   ++.+++++|+++|+++            +..+..|.||||.|+.  .++.+++++|++.|+++ +.++..|
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi------------n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g  158 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI------------TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDN  158 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCC
Confidence            998764   4799999999999884            4689999999999876  46899999999999987 7899999


Q ss_pred             CcHHHH-HHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          169 QTPLAI-AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       169 ~t~l~~-a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .||||. ++..++.+++++|+++| ++++.++..|.|||++|+.++-
T Consensus       159 ~t~Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        159 NNILYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhhhh
Confidence            999995 56778999999999999 9999999999999999998764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=203.24  Aligned_cols=169  Identities=20%  Similarity=0.184  Sum_probs=151.7

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCC-CCHHHHHHHhC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG-ETPLHIAARVG  100 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g-~t~l~~a~~~~  100 (215)
                      .+|||.|+..|+.+++++|+.+|+++ +..+..|.||||+|+..|+.+++++|+ ..+++++.++..| .||||+|+..|
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll-~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCcHHHHHHHHcC
Confidence            57899999999999999999999998 889999999999999999999999999 5677788888877 58999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcH-HHHHHHc
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP-LAIAIDS  178 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~-l~~a~~~  178 (215)
                      +.+++++|++++++.              .+ ..|.||||+|+..|+.+++++|+++|+++ +.++..|.|| ||+|+..
T Consensus       140 ~~eivk~LL~~~~~~--------------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        140 DVSIVSYFLSEIPST--------------FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             CHHHHHHHHhcCCcc--------------cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHc
Confidence            999999999987542              22 24899999999999999999999999987 7788889877 9999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCccCccHHHHH
Q 037245          179 SLTDIACFIIDQRPDSLDHRLPEELTLLHSA  209 (215)
Q Consensus       179 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A  209 (215)
                      |+.+++++|+++| ++++.++..| ++|..|
T Consensus       205 ~~~e~v~lLl~~G-a~in~~~~~~-~~l~~~  233 (284)
T PHA02791        205 KDLEMLQALFKYD-INIYSVNLEN-VLLDDA  233 (284)
T ss_pred             CCHHHHHHHHHCC-CCCccCcccC-ccCCCH
Confidence            9999999999999 9999999844 766544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-33  Score=218.75  Aligned_cols=178  Identities=21%  Similarity=0.255  Sum_probs=152.8

Q ss_pred             ccHHHHHHH--HcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcC--CcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           21 MDHELLNVL--RRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        21 ~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      +.+|||.|+  ..|+.+++++|+++|+++ +..+..|.||||.|+..+  +.+++++|+ ..+++++.++..|.||||+|
T Consensus       106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll-~~g~din~~d~~g~tpL~~A  183 (480)
T PHA03100        106 GITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLI-DKGVDINAKNRYGYTPLHIA  183 (480)
T ss_pred             CCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHH-HCCCCcccccCCCCCHHHHH
Confidence            345688888  888888888888888887 777888888888888888  788888888 55667777777888888888


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC------CcHHHHHHhcCC--HHHHHHHHHcCCCCccccccCC
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG------NTPLHNAVRNKH--ENVVRMLVKKDRIPLGYINKAE  168 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~  168 (215)
                      +..|+.+++++|+++|+++.            ..+..+      .||||.|+..++  .+++++|+++|+++ +.++..|
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~~------------~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g  250 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADIN------------AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYG  250 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCcc------------CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCC
Confidence            88888888888888887643            456666      899999999999  99999999999987 7899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          169 QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       169 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .||||+|+..++.+++++|+++| ++++.++..|.||+++|+..++
T Consensus       251 ~TpL~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        251 FTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILNNN  295 (480)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhCC
Confidence            99999999999999999999999 8999999999999999998875

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-33  Score=217.95  Aligned_cols=172  Identities=23%  Similarity=0.350  Sum_probs=118.4

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHH--------------------------
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILR--------------------------   76 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~--------------------------   76 (215)
                      +|||.|+..|+.+++++|+++|+++ +..+..|.||||+||..|+.++++.|++                          
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~  117 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIF  117 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHH
Confidence            4699999999999999999999998 8889999999999998766544443332                          


Q ss_pred             -------------------------------------hccccccccCCC-CCCHHHHHHHhCCHHHHHHHHhhcccccCC
Q 037245           77 -------------------------------------QQDSLLRKHNLK-GETPLHIAARVGDPAIVSTILNYVPAITNG  118 (215)
Q Consensus        77 -------------------------------------~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  118 (215)
                                                           ..+++++.++.. |.||||+|+..|+.+++++|+++|+++.  
T Consensus       118 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n--  195 (477)
T PHA02878        118 KIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN--  195 (477)
T ss_pred             HHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC--
Confidence                                                 234455666666 8999999999999999999999988754  


Q ss_pred             CCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc-CCHHHHHHHHHhCCCCccc
Q 037245          119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS-SLTDIACFIIDQRPDSLDH  197 (215)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~  197 (215)
                                ..+..|.||||.|+..++.+++++|++.|+++ +.++..|.||||+|+.. ++.+++++|+++| ++++.
T Consensus       196 ----------~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~  263 (477)
T PHA02878        196 ----------IPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVNA  263 (477)
T ss_pred             ----------CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCCc
Confidence                      34555556666666655666666666555554 45555556666655543 4555555555555 55554


Q ss_pred             cCc-cCccHHHHH
Q 037245          198 RLP-EELTLLHSA  209 (215)
Q Consensus       198 ~~~-~g~t~l~~A  209 (215)
                      ++. .|.||||+|
T Consensus       264 ~~~~~g~TpLh~A  276 (477)
T PHA02878        264 KSYILGLTALHSS  276 (477)
T ss_pred             cCCCCCCCHHHHH
Confidence            443 455555554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=216.45  Aligned_cols=188  Identities=20%  Similarity=0.153  Sum_probs=126.1

Q ss_pred             HHHHHHHHcC---ChHHHHHHHhcccCcccccCCCCchHHHHHHHcC-CcchHHHHHHhccccccccCCCCCCHHHHHH-
Q 037245           23 HELLNVLRRG---DEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRQQDSLLRKHNLKGETPLHIAA-   97 (215)
Q Consensus        23 ~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~-   97 (215)
                      +|||.|+..+   +.++++.|+++|+++ +..+..|.||||+|+..+ ..+++++|+ ..+++++.++..|.||||+|+ 
T Consensus        49 t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl-~~ga~in~~~~~g~tpLh~a~~  126 (471)
T PHA03095         49 TPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLI-KAGADVNAKDKVGRTPLHVYLS  126 (471)
T ss_pred             CHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHhh
Confidence            3455555555   555555555555555 555555556666655555 355555555 344555555555555555555 


Q ss_pred             -HhCCHHHHHHHHhhcccccC-----------------------------------CCCCC-------------------
Q 037245           98 -RVGDPAIVSTILNYVPAITN-----------------------------------GTESE-------------------  122 (215)
Q Consensus        98 -~~~~~~~~~~Ll~~~~~~~~-----------------------------------~~~~~-------------------  122 (215)
                       ..++.+++++|+++|+++..                                   ....+                   
T Consensus       127 ~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~  206 (471)
T PHA03095        127 GFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVR  206 (471)
T ss_pred             CCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHH
Confidence             23344555555555544322                                   21111                   


Q ss_pred             ----ccccccccCCCCCcHHHHHHhcCCH--HHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 037245          123 ----PESLLRITDDEGNTPLHNAVRNKHE--NVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD  196 (215)
Q Consensus       123 ----~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  196 (215)
                          .+..++.+|..|+||||+|+..+..  .+++.|+..|+++ +.++..|+||||+|+..|+.+++++|+++| ++++
T Consensus       207 ~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~g-ad~n  284 (471)
T PHA03095        207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIALG-ADIN  284 (471)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCc
Confidence                2333456677778888888777653  5777788888876 788899999999999999999999999999 9999


Q ss_pred             ccCccCccHHHHHHHhCC
Q 037245          197 HRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       197 ~~~~~g~t~l~~A~~~~~  214 (215)
                      .++..|.||||+|+.+|+
T Consensus       285 ~~~~~g~tpl~~A~~~~~  302 (471)
T PHA03095        285 AVSSDGNTPLSLMVRNNN  302 (471)
T ss_pred             ccCCCCCCHHHHHHHhCC
Confidence            999999999999998876

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-32  Score=211.30  Aligned_cols=188  Identities=20%  Similarity=0.202  Sum_probs=168.1

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      .|..|+..|+.+.++.++..++...+..+..|.||||.|+..|+.+++++|+ ..+++++..+..|.||||.|+..|+.+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            5889999999999999998776654778889999999999999999999999 667888889999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCC-----------CccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 037245          104 IVSTILNYVPAITNGTES-----------EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL  172 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  172 (215)
                      ++++|+++|++.......           ..+..++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.|||
T Consensus        83 iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpL  161 (434)
T PHA02874         83 IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPI  161 (434)
T ss_pred             HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHH
Confidence            999999999875321111           033456778899999999999999999999999999987 78899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          173 AIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       173 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |+|+..++.+++++|+++| ++++.++..|.||||+|+..|+
T Consensus       162 h~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g~  202 (434)
T PHA02874        162 HIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGD  202 (434)
T ss_pred             HHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCC
Confidence            9999999999999999999 9999999999999999999886

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=211.26  Aligned_cols=187  Identities=17%  Similarity=0.211  Sum_probs=129.1

Q ss_pred             HHHHHHHH--cCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           23 HELLNVLR--RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        23 ~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      ++||.++.  ..+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+ ..+++++.+|..|.||||+|+..+
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL-~~GAdin~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLL-THGADPNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcC
Confidence            44554432  33455666666666665 556666666666666666666666666 345555666666666666655543


Q ss_pred             --CHHHHHHHHhhcccccCCCC-CC--------------------ccccccccCCCCCcHHHHHHhcC--CHHHHHHHHH
Q 037245          101 --DPAIVSTILNYVPAITNGTE-SE--------------------PESLLRITDDEGNTPLHNAVRNK--HENVVRMLVK  155 (215)
Q Consensus       101 --~~~~~~~Ll~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~  155 (215)
                        ..+++++|+++|+++..... .+                    .+..++..|..|+||||+|+..+  ..+++++|++
T Consensus       117 ~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~  196 (446)
T PHA02946        117 DEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMK  196 (446)
T ss_pred             CchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence              25556666666655442111 00                    22335678889999999987754  4689999999


Q ss_pred             cCCCCccccccCCCcHHHHHHHcC--CHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          156 KDRIPLGYINKAEQTPLAIAIDSS--LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 ~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +|+++ +.+|..|.||||+|+..+  +.+++++|+. | ++++.+|..|.||||+|+..++
T Consensus       197 ~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        197 LGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             cCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCC
Confidence            99987 788999999999999876  7889999884 7 8999999999999999998765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.2e-33  Score=211.80  Aligned_cols=185  Identities=23%  Similarity=0.203  Sum_probs=164.9

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccC-CCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMS-PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE   90 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~   90 (215)
                      ++..++. .+.++||+|+.+++.+++++|+++|+++ |... ..+.||||||++.|++.+|..|+ +++++++.+|.+|.
T Consensus        70 ~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLl-qhGAdpt~~D~~G~  146 (600)
T KOG0509|consen   70 SVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLL-QHGADPTLKDKQGL  146 (600)
T ss_pred             CCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHH-HcCCCCceecCCCC
Confidence            3444554 5556799999999999999999999999 6666 77899999999999999999999 78999999999999


Q ss_pred             CHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCc
Q 037245           91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT  170 (215)
Q Consensus        91 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  170 (215)
                      +|+|+|++.|+.-++.+|+.++++            +|.+|.+|+|||++|+.++.-..+..|+..++......+..|.|
T Consensus       147 ~~lHla~~~~~~~~vayll~~~~d------------~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~T  214 (600)
T KOG0509|consen  147 TPLHLAAQFGHTALVAYLLSKGAD------------IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNT  214 (600)
T ss_pred             cHHHHHHHhCchHHHHHHHHhccc------------CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCc
Confidence            999999999999999999999966            55899999999999999999888999999999984334489999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHh
Q 037245          171 PLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       171 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      |||+|+..|+..++. |+..|.++.+.+|.+|.||+.+|.++
T Consensus       215 pLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  215 PLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999999999 55555599999999999999999765

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.6e-32  Score=208.70  Aligned_cols=180  Identities=16%  Similarity=0.205  Sum_probs=127.4

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHc--CCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRF--RNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      +++.++..++.+.++.++......      .+.++||.++..  .+.+++++|+ ..+.+++.+|..|.||||+|+..|+
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~~~------g~~~~Lh~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~G~TpLh~Aa~~g~   84 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIEPS------GNYHILHAYCGIKGLDERFVEELL-HRGYSPNETDDDGNYPLHIASKINN   84 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccCCC------CCChHHHHHHHhcCCCHHHHHHHH-HCcCCCCccCCCCCCHHHHHHHcCC
Confidence            378888999999999999763221      247899987754  3567999999 5678899999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCC-----------------------cccccc-ccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 037245          102 PAIVSTILNYVPAITNGTESE-----------------------PESLLR-ITDDEGNTPLHNAVRNKHENVVRMLVKKD  157 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~-----------------------~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  157 (215)
                      .+++++|+++|+++......+                       .++.++ ..+..|.|||+ |+..+..+++++|++.|
T Consensus        85 ~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g  163 (446)
T PHA02946         85 NRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG  163 (446)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc
Confidence            999999999998865322111                       111112 12344445554 33334455555555555


Q ss_pred             CCCccccccCCCcHHHHHHHcC--CHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          158 RIPLGYINKAEQTPLAIAIDSS--LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       158 ~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      ++. +..+..|+||||.|+..+  ..+++++|+++| ++++.+|..|.||||+|+..|
T Consensus       164 ad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        164 FEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             ccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcC
Confidence            544 456667777777766544  357788888888 888888888888888888765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=210.58  Aligned_cols=160  Identities=21%  Similarity=0.235  Sum_probs=142.1

Q ss_pred             HHHHHHhcccCcccccCCC-CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhccc
Q 037245           36 QIRPIAGRMQNIFSTMSPR-GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA  114 (215)
Q Consensus        36 ~~~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  114 (215)
                      ++++|+++|+++ +..+.. |.||||+|+..|+.+++++|+ ..+++++.++..|.||||.|+..++.+++++|+++|++
T Consensus       149 iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            555566667777 777777 999999999999999999999 56788899999999999999999999999999999988


Q ss_pred             ccCCCCCCccccccccCCCCCcHHHHHHhc-CCHHHHHHHHHcCCCCcccccc-CCCcHHHHHHHcCCHHHHHHHHHhCC
Q 037245          115 ITNGTESEPESLLRITDDEGNTPLHNAVRN-KHENVVRMLVKKDRIPLGYINK-AEQTPLAIAIDSSLTDIACFIIDQRP  192 (215)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~  192 (215)
                      +            +.+|..|.||||+|+.. ++.+++++|+++|+++ +..+. .|.||||+|  .++.+++++|+++| 
T Consensus       227 i------------n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-  290 (477)
T PHA02878        227 T------------DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYG-  290 (477)
T ss_pred             C------------CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCC-
Confidence            4            46889999999999975 6899999999999998 55554 799999999  46789999999999 


Q ss_pred             CCccccCccCccHHHHHHHhC
Q 037245          193 DSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       193 ~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      ++++..+..|.||||+|+..+
T Consensus       291 adin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        291 ADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHHc
Confidence            999999999999999998754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.2e-32  Score=212.27  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=118.6

Q ss_pred             HHHcCChHHHHHHHhcccCcccccCCCCchHHHHHH--HcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC--CHH
Q 037245           28 VLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAI--RFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG--DPA  103 (215)
Q Consensus        28 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~  103 (215)
                      |+..++.+++++|+++|+++ +..+..|.||||+|+  ..|+.+++++|+ ..+++++.++..|.||||.|+..+  +.+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCChHH
Confidence            55555555555555555555 555555555555555  555555555555 334445555555555555555555  555


Q ss_pred             HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCC------CcHHHHHHH
Q 037245          104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE------QTPLAIAID  177 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~------~t~l~~a~~  177 (215)
                      ++++|+++|++            ++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|      .||||.|+.
T Consensus       158 iv~~Ll~~g~d------------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~  224 (480)
T PHA03100        158 ILKLLIDKGVD------------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAAC  224 (480)
T ss_pred             HHHHHHHCCCC------------cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHH
Confidence            55555555544            3456778888888888888888888888888876 5666666      788888888


Q ss_pred             cCC--HHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          178 SSL--TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       178 ~~~--~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .++  .+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       225 ~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~~~  262 (480)
T PHA03100        225 YNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYNNN  262 (480)
T ss_pred             hCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCC
Confidence            888  88888888888 8888888889999999988775

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-31  Score=208.38  Aligned_cols=181  Identities=13%  Similarity=0.161  Sum_probs=153.3

Q ss_pred             hccHHHHHHHHc-----CChHHHHHHHhcccCcccccCCCCchHHHHHHHcC---CcchHHHHHHhccccccccCCCCCC
Q 037245           20 TMDHELLNVLRR-----GDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR---NHKVIPEILRQQDSLLRKHNLKGET   91 (215)
Q Consensus        20 ~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~ll~~~~~~~~~~~~~g~t   91 (215)
                      .+.+|||.|+..     +..+++++|+++|+++ +..+..|.||||+|+..+   +.+++++|+ +.+++++.++..|.|
T Consensus        70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~t  147 (489)
T PHA02798         70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTLLDKDGFT  147 (489)
T ss_pred             CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccccCCCCCc
Confidence            345569988764     6789999999999998 999999999999999875   678999999 677889999999999


Q ss_pred             HHHHHHHhCC---HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhc----CCHHHHHHHHHcCCCC----
Q 037245           92 PLHIAARVGD---PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN----KHENVVRMLVKKDRIP----  160 (215)
Q Consensus        92 ~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~ll~~~~~~----  160 (215)
                      |||+|+..++   .+++++|+++|+++..           ..+..|.||||.++..    ++.+++++|+++|+.+    
T Consensus       148 pL~~a~~~~~~~~~~vv~~Ll~~gadin~-----------~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~  216 (489)
T PHA02798        148 MLQVYLQSNHHIDIEIIKLLLEKGVDINT-----------HNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN  216 (489)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHhCCCccc-----------ccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence            9999999987   8999999999988543           1245678888887653    3678888888776543    


Q ss_pred             ----------------------------------ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHH
Q 037245          161 ----------------------------------LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLL  206 (215)
Q Consensus       161 ----------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l  206 (215)
                                                        .+.+|..|.||||+|+..++.+++++|+++| ++++.++..|.|||
T Consensus       217 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-Adin~~d~~G~TpL  295 (489)
T PHA02798        217 KSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-GDINIITELGNTCL  295 (489)
T ss_pred             ccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-CcccccCCCCCcHH
Confidence                                              2446678999999999999999999999999 99999999999999


Q ss_pred             HHHHHhCC
Q 037245          207 HSAVMRQN  214 (215)
Q Consensus       207 ~~A~~~~~  214 (215)
                      +.|+.+|+
T Consensus       296 ~~A~~~~~  303 (489)
T PHA02798        296 FTAFENES  303 (489)
T ss_pred             HHHHHcCc
Confidence            99998875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.98  E-value=8.6e-31  Score=209.47  Aligned_cols=174  Identities=19%  Similarity=0.120  Sum_probs=149.5

Q ss_pred             hhccHHHHHHHH--cCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCc--chHHHHHHhccccccccCCCCCCHHH
Q 037245           19 ATMDHELLNVLR--RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNH--KVIPEILRQQDSLLRKHNLKGETPLH   94 (215)
Q Consensus        19 ~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~ll~~~~~~~~~~~~~g~t~l~   94 (215)
                      ..+.+|||.|+.  .++.+++++|+++|+++ +.++..|.||||+|+..|+.  +++++|+ +.+++++.++..|.||||
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~~G~TPLh  252 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCVNGMSPIM  252 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCCCCCCHHH
Confidence            445667998764  46789999999999999 99999999999999999864  8999999 678899999999999999


Q ss_pred             HHH-------------------------------------HhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcH
Q 037245           95 IAA-------------------------------------RVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTP  137 (215)
Q Consensus        95 ~a~-------------------------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (215)
                      .|+                                     ..|+.+++++|+++|++            ++.+|..|+||
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd------------IN~kD~~G~TP  320 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK------------LHYKDSAGRTC  320 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc------------eeccCCCCCCH
Confidence            763                                     33566677777777765            45789999999


Q ss_pred             HHHHHh--cCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH--------------cCCHHHHHHHHHhCCCCccccCcc
Q 037245          138 LHNAVR--NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAID--------------SSLTDIACFIIDQRPDSLDHRLPE  201 (215)
Q Consensus       138 l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~~  201 (215)
                      ||+|+.  .++.+++++|+++|+++ +.+|..|+||||+|+.              .++.+++++|+++| ++++.++..
T Consensus       321 LH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~  398 (764)
T PHA02716        321 LHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCL  398 (764)
T ss_pred             HHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCC
Confidence            999764  45789999999999987 7899999999999865              36889999999999 999999999


Q ss_pred             CccHHHH
Q 037245          202 ELTLLHS  208 (215)
Q Consensus       202 g~t~l~~  208 (215)
                      |.||||.
T Consensus       399 G~TPLh~  405 (764)
T PHA02716        399 GYTPLTS  405 (764)
T ss_pred             CCChHHH
Confidence            9999994

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=9.4e-31  Score=205.98  Aligned_cols=179  Identities=18%  Similarity=0.200  Sum_probs=141.3

Q ss_pred             cHHHHHHHHcC------ChHHHHHHHhcccCcccccCCCCchHHHHHHHc---CCcchHHHHHHhccccc-cccCCCCCC
Q 037245           22 DHELLNVLRRG------DEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRF---RNHKVIPEILRQQDSLL-RKHNLKGET   91 (215)
Q Consensus        22 ~~~l~~a~~~~------~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~~-~~~~~~g~t   91 (215)
                      .+|||.|+..+      ..++++.|+++|+++ +.++..|.||||.|+..   ++.+++++|+ +.++++ +.++..|.|
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll-~~Gadin~~~d~~g~t  147 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLL-SKGINVNDVKNSRGYN  147 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHH-HCCCCcccccCCCCCC
Confidence            45688777654      357888888888888 88888888888877654   5678888888 556777 678888888


Q ss_pred             HHHHHHHh--CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcC----CHHHHHHHHHcCCCC-----
Q 037245           92 PLHIAARV--GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK----HENVVRMLVKKDRIP-----  160 (215)
Q Consensus        92 ~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~-----  160 (215)
                      |||+|+..  ++.+++++|+++|+++..           ..+..|.||||.|+..+    +.+++++|++.|++.     
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~-----------~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFE-----------KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccc-----------cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            88887764  577888888888877543           14556777877776543    677777777776653     


Q ss_pred             --------------------------------ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHH
Q 037245          161 --------------------------------LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHS  208 (215)
Q Consensus       161 --------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~  208 (215)
                                                      .+.+|..|+||||+|+..++.+++++|+++| ++++.++..|.||||+
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~  295 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTY  295 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHH
Confidence                                            1345667999999999999999999999999 9999999999999999


Q ss_pred             HHHhCC
Q 037245          209 AVMRQN  214 (215)
Q Consensus       209 A~~~~~  214 (215)
                      |+.+|+
T Consensus       296 A~~~~~  301 (494)
T PHA02989        296 AIKHGN  301 (494)
T ss_pred             HHHcCC
Confidence            999886

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3.7e-30  Score=200.23  Aligned_cols=177  Identities=23%  Similarity=0.284  Sum_probs=113.0

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhc----ccc------------------
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQ----DSL------------------   81 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~----~~~------------------   81 (215)
                      |||.||..+..+..+.|++.++++ ...+.+|++|+|.|+.+|..++.+.++.++    ...                  
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~  235 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG  235 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc
Confidence            366666666666556666666665 444555555555555555555555444311    111                  


Q ss_pred             ------------------------------ccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC
Q 037245           82 ------------------------------LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD  131 (215)
Q Consensus        82 ------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  131 (215)
                                                    ++..|.+|.||||+|++.|+.+++..|+..|+++.            .++
T Consensus       236 g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~------------~kn  303 (929)
T KOG0510|consen  236 GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN------------SKN  303 (929)
T ss_pred             CCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc------------ccC
Confidence                                          34456666667777777777777777766666633            566


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCcc---ccCccCccHHH
Q 037245          132 DEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD---HRLPEELTLLH  207 (215)
Q Consensus       132 ~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~---~~~~~g~t~l~  207 (215)
                      .++.||||.|+.+|++.+++.|++ .+.-..+..|..|.||||.|++.|+.++++.|+++| +...   ..|.+|.||||
T Consensus       304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH  382 (929)
T KOG0510|consen  304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALH  382 (929)
T ss_pred             CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC-hhhhcccccccCCchhhh
Confidence            777777777777777777777777 444445666777777777777777777777777777 4444   44777888888


Q ss_pred             HHHHhCC
Q 037245          208 SAVMRQN  214 (215)
Q Consensus       208 ~A~~~~~  214 (215)
                      .|+.+|+
T Consensus       383 ~Aa~~g~  389 (929)
T KOG0510|consen  383 LAAKYGN  389 (929)
T ss_pred             HHHHhcc
Confidence            8877775

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=190.59  Aligned_cols=176  Identities=11%  Similarity=0.058  Sum_probs=155.3

Q ss_pred             HHHHcCChHHHHHHHhcccCccc------ccCCCCchHHHHHHH--cCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           27 NVLRRGDEHQIRPIAGRMQNIFS------TMSPRGNTVLHMAIR--FRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        27 ~a~~~~~~~~~~~ll~~~~~~~~------~~~~~g~t~L~~A~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      +|+..+..+++++|+.++.++ +      .++..+.|+||.++.  .++.+++++|+ .+|++++.+  .+.||||.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~--~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKI--ECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCC--CCCCHHHHHHH
Confidence            788999999999999999997 5      577889999999999  89999999999 778888764  45899999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS  178 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  178 (215)
                      .++.+++++|+++|++.....      ..+..+..+.+++|.+...+..+++++|+++|++. +.++..|.||||+|+..
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~  231 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDV------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYA  231 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccc------cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHc
Confidence            999999999999997532211      01122345778999999999999999999999987 88999999999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          179 SLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       179 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |+.+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       232 g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        232 GYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999 9999999999999999999884

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=200.69  Aligned_cols=191  Identities=21%  Similarity=0.240  Sum_probs=164.3

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      ...|+|+|+..|+.++++.|++.+.++ +..|..|.||||.||..++.+..+.|+ +.++++...+.+|+.|+|.|+++|
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~~k~Li-~~~a~~~K~~~~~~~~iH~aa~s~  198 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEAKKELI-NKGADPCKSDIDGNFPIHEAARSG  198 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHHHHHHH-hcCCCCCcccCcCCchHHHHHHhc
Confidence            345699999999999999999999999 999999999999999999999777777 677777788888888888888888


Q ss_pred             CHHHHHHHHh-----hcccccCCCCCC------------------------------------ccccccccCCCCCcHHH
Q 037245          101 DPAIVSTILN-----YVPAITNGTESE------------------------------------PESLLRITDDEGNTPLH  139 (215)
Q Consensus       101 ~~~~~~~Ll~-----~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~l~  139 (215)
                      ..++.+..+.     .+..++......                                    ...+++..|.+|.||||
T Consensus       199 s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH  278 (929)
T KOG0510|consen  199 SKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLH  278 (929)
T ss_pred             chhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHH
Confidence            8888887777     333332222222                                    23346778999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHH-hCCCCccccCccCccHHHHHHHhCC
Q 037245          140 NAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID-QRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       140 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +|++.|..+.++.|+..|+++ +.++.++.||||.|+.+|+++.++.|++ .+....+..|-.|.||||.|++.|.
T Consensus       279 ~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH  353 (929)
T KOG0510|consen  279 YAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH  353 (929)
T ss_pred             HHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH
Confidence            999999999999999999998 7899999999999999999999999999 6678888899999999999998875

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.2e-29  Score=203.62  Aligned_cols=174  Identities=21%  Similarity=0.245  Sum_probs=102.0

Q ss_pred             HHHHHHHcC-ChHHHHHHHhcccCcccccCCCCchHHHHHHHcC-CcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           24 ELLNVLRRG-DEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        24 ~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      |||.|+..| +.+.++.|+..|.++ +..+..|.||||+|+..+ +.++++.|+ ..+++++.+|..|.||||+|+..++
T Consensus       310 pLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl-~~gadin~~d~~G~TpLh~Aa~~~~  387 (682)
T PHA02876        310 PLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNN  387 (682)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHH-HcCCCCccCCCCCCCHHHHHHHcCC
Confidence            345454444 344455555555444 444455555555554432 334444444 4455555566666666666666666


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCccccccCCCcHHHHHHHcC-
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-ENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS-  179 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~-  179 (215)
                      .+++++|+++|+++.            ..+..|.||||+|+..+. ..++++|+++|+++ +.++..|+||||+|+..+ 
T Consensus       388 ~~iv~~Ll~~gad~~------------~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadi-n~~d~~G~TpLh~Aa~~~~  454 (682)
T PHA02876        388 VVIINTLLDYGADIE------------ALSQKIGTALHFALCGTNPYMSVKTLIDRGANV-NSKNKDLSTPLHYACKKNC  454 (682)
T ss_pred             HHHHHHHHHCCCCcc------------ccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCC-CcCCCCCChHHHHHHHhCC
Confidence            666666666665532            445556666666665443 34566666666665 566777777777777655 


Q ss_pred             CHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          180 LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       180 ~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      ..+++++|+++| ++++.++..|.||+++|+.++
T Consensus       455 ~~~iv~lLl~~G-ad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        455 KLDVIEMLLDNG-ADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             cHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhC
Confidence            467777777777 777777777777777776543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.97  E-value=2.6e-29  Score=207.58  Aligned_cols=173  Identities=15%  Similarity=0.206  Sum_probs=159.5

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.++|+.|+..|+.++++.|++.|.++ +..|..|.||||+|+..|+.+++++|+ ..+++++.+|.+|.||||.|+..|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCCCCCHHHHHHHhC
Confidence            456799999999999999999999999 999999999999999999999999999 568889999999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|++.++.              .....+.++||.|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus       603 ~~~iv~~L~~~~~~--------------~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~  667 (823)
T PLN03192        603 HHKIFRILYHFASI--------------SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDH  667 (823)
T ss_pred             CHHHHHHHHhcCcc--------------cCcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            99999999987754              22345778999999999999999999999997 7899999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCccC-ccHHHHHHH
Q 037245          181 TDIACFIIDQRPDSLDHRLPEE-LTLLHSAVM  211 (215)
Q Consensus       181 ~~~~~~Ll~~g~~~~~~~~~~g-~t~l~~A~~  211 (215)
                      .+++++|+++| ++++..+..| .+|..++..
T Consensus       668 ~~iv~~Ll~~G-Adv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        668 VDMVRLLIMNG-ADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHH
Confidence            99999999999 9999999888 899988754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4e-29  Score=203.77  Aligned_cols=177  Identities=17%  Similarity=0.171  Sum_probs=150.2

Q ss_pred             ccHHHHHHHHcCCh-HHHHHHHhcccCcccccCCCCchHHHHHHHcC-CcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           21 MDHELLNVLRRGDE-HQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        21 ~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      +.+|||.|+..++. ++++.|++.|.++ +..+..|.||||+|+..| ..++++.|+ ..+++++.++..|.||||+|+.
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLI-MLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHH-HcCCCCCCcccCCCcHHHHHHH
Confidence            45568888888876 5788888888887 778888888888888887 477787777 5677788888888888888887


Q ss_pred             h-CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH
Q 037245           99 V-GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAID  177 (215)
Q Consensus        99 ~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~  177 (215)
                      . ++.+++++|+++|++            ++.+|..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+.
T Consensus       351 ~~~~~~iv~lLl~~gad------------in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        351 LDRNKDIVITLLELGAN------------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALC  417 (682)
T ss_pred             hCCcHHHHHHHHHcCCC------------CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHH
Confidence            5 467888888888877            4468899999999999999999999999999997 7788899999999987


Q ss_pred             cCC-HHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          178 SSL-TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       178 ~~~-~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      .+. ..++++|+++| ++++.+|..|.||||+|+..|
T Consensus       418 ~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        418 GTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             cCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhC
Confidence            655 56789999999 999999999999999999876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=4.3e-29  Score=199.77  Aligned_cols=166  Identities=19%  Similarity=0.187  Sum_probs=146.3

Q ss_pred             HcCChHHHHHHHhcc-cCccccc-CCCCchHHHHHHHc--CCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC--HH
Q 037245           30 RRGDEHQIRPIAGRM-QNIFSTM-SPRGNTVLHMAIRF--RNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD--PA  103 (215)
Q Consensus        30 ~~~~~~~~~~ll~~~-~~~~~~~-~~~g~t~L~~A~~~--~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~--~~  103 (215)
                      +.++.+++++|+++| +++ +.. +..|.||||.|+..  ++.+++++|+ +.+++++.+|..|.||||+|+..|+  .+
T Consensus       151 ~~v~leiVk~LLe~G~ADI-N~~~d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNL-NYVCKKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCc-ccccCCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence            468999999999999 998 777 88999999998754  5679999999 6778999999999999999999995  48


Q ss_pred             HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHH-------------------------------------HhcCC
Q 037245          104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA-------------------------------------VRNKH  146 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-------------------------------------~~~~~  146 (215)
                      ++++|+++|+++.            .++..|+||||.|                                     +..|+
T Consensus       229 IVklLLe~GADVN------------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~  296 (764)
T PHA02716        229 VIKKIIELGGDMD------------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNID  296 (764)
T ss_pred             HHHHHHHcCCCCC------------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCC
Confidence            9999999998844            6788899999865                                     34577


Q ss_pred             HHHHHHHHHcCCCCccccccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCccccCccCccHHHHHHH
Q 037245          147 ENVVRMLVKKDRIPLGYINKAEQTPLAIAID--SSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM  211 (215)
Q Consensus       147 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~  211 (215)
                      .+++++|+++|++. +.++..|+||||+|+.  .++.+++++|+++| ++++.+|..|.||||+|+.
T Consensus       297 leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-ADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        297 ISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-NDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-CCCccCCCCCCCHHHHHHH
Confidence            89999999999987 7899999999998764  46789999999999 9999999999999999875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-29  Score=187.16  Aligned_cols=178  Identities=19%  Similarity=0.185  Sum_probs=156.6

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcc-cCc-------ccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCH
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRM-QNI-------FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETP   92 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~-~~~-------~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   92 (215)
                      +.+||.+|+++|+.+++++|+++. +++       +.-....|-+||..|+..|++++|+.|+ +.++.+|.......||
T Consensus        42 g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~-~~ga~VN~tT~TNStP  120 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLL-RRGASVNDTTRTNSTP  120 (615)
T ss_pred             CCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHH-HhcCccccccccCCcc
Confidence            345699999999999999999953 222       1233457889999999999999999999 5568899888899999


Q ss_pred             HHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 037245           93 LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL  172 (215)
Q Consensus        93 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  172 (215)
                      |-.||.-|+.+++++|+++|+++.            ..|..|.|+|+.|+..|+.+++++|++.|++. +.++..|.|+|
T Consensus       121 LraACfDG~leivKyLvE~gad~~------------IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTAL  187 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGADPE------------IANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTAL  187 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCCCc------------ccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHH
Confidence            999999999999999999998854            78999999999999999999999999999998 78999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          173 AIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       173 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |.|++.|+.+++++|+++| +-+.. |..|-|||..|+..|.
T Consensus       188 H~caEsG~vdivq~Ll~~g-a~i~~-d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  188 HDCAESGSVDIVQLLLKHG-AKIDV-DGHGMTPLLLAAVTGH  227 (615)
T ss_pred             HhhhhcccHHHHHHHHhCC-ceeee-cCCCCchHHHHhhhcc
Confidence            9999999999999999999 77664 4459999999998874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=2e-28  Score=192.37  Aligned_cols=185  Identities=15%  Similarity=0.142  Sum_probs=126.9

Q ss_pred             HHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcC---CcchHHHHHHhccccccccCCCCCCHHHHHHHhC-C
Q 037245           26 LNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR---NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG-D  101 (215)
Q Consensus        26 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~-~  101 (215)
                      ..++..++.+++++|+++|+++ +..+..|.||||+|+..+   +.+++++|+ ..+++++.++..|.||||+|+..+ .
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v-n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc-ccCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCc
Confidence            4567788999999999999999 899999999999999998   999999999 678889999999999999999999 5


Q ss_pred             HHHHHHHHhhcccccCCCCCC-----------------------ccccccccCCCCCcHHHHHHhcC--CHHHHHHHHHc
Q 037245          102 PAIVSTILNYVPAITNGTESE-----------------------PESLLRITDDEGNTPLHNAVRNK--HENVVRMLVKK  156 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~  156 (215)
                      .+++++|+++|+++......+                       .+..++..+..|.||||.++..+  ..+++++|++.
T Consensus        97 ~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~  176 (471)
T PHA03095         97 LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDA  176 (471)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            999999999998854322211                       12223333444444444444332  23444444444


Q ss_pred             CCCCccccccCCCcHHHHHHHc--CCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          157 DRIPLGYINKAEQTPLAIAIDS--SLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       157 ~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |++. +..+..|.||||.++..  +..++++.|+++| ++++.+|..|.||||+|+..|+
T Consensus       177 g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~  234 (471)
T PHA03095        177 GADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSS  234 (471)
T ss_pred             CCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCC
Confidence            4443 22344455555544432  3455555566555 5666666666666666665553

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.7e-28  Score=190.51  Aligned_cols=170  Identities=16%  Similarity=0.177  Sum_probs=147.1

Q ss_pred             HHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHc-----CCcchHHHHHHhccccccccCCCCCCHHHHHHHhC---
Q 037245           29 LRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRF-----RNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG---  100 (215)
Q Consensus        29 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~---  100 (215)
                      ...++.+++++|+++|+++ +..+..|.||||.|+..     +..+++++|+ +.+++++.++..|.||||+|+..+   
T Consensus        46 ~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll-~~GadiN~~d~~G~TpLh~a~~~~~~~  123 (489)
T PHA02798         46 RDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIVKILI-ENGADINKKNSDGETPLYCLLSNGYIN  123 (489)
T ss_pred             CCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH-HCCCCCCCCCCCcCcHHHHHHHcCCcC
Confidence            3345899999999999999 99999999999998864     5689999999 678889999999999999999976   


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC---HHHHHHHHHcCCCCcccc-ccCCCcHHHHHH
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH---ENVVRMLVKKDRIPLGYI-NKAEQTPLAIAI  176 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~-~~~~~t~l~~a~  176 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..+.   .+++++|++.|+++ +.. +..|.||||.++
T Consensus       124 ~~~iv~~Ll~~Gadv------------n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        124 NLEILLFMIENGADT------------TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYF  190 (489)
T ss_pred             hHHHHHHHHHcCCCc------------cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHH
Confidence            789999999999884            4689999999999999887   99999999999987 444 457899999887


Q ss_pred             Hc----CCHHHHHHHHHhCCC---------------------------------------CccccCccCccHHHHHHHhC
Q 037245          177 DS----SLTDIACFIIDQRPD---------------------------------------SLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       177 ~~----~~~~~~~~Ll~~g~~---------------------------------------~~~~~~~~g~t~l~~A~~~~  213 (215)
                      ..    ++.+++++|+++| +                                       ++|.+|..|.||||+|+.+|
T Consensus       191 ~~~~~~~~~~ivk~Li~~G-a~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~  269 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNG-FIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHN  269 (489)
T ss_pred             HhccccCCHHHHHHHHHCC-CCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcC
Confidence            64    4789999999887 4                                       34557778999999999887


Q ss_pred             C
Q 037245          214 N  214 (215)
Q Consensus       214 ~  214 (215)
                      +
T Consensus       270 ~  270 (489)
T PHA02798        270 N  270 (489)
T ss_pred             c
Confidence            6

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=5e-28  Score=194.04  Aligned_cols=177  Identities=11%  Similarity=0.043  Sum_probs=145.4

Q ss_pred             hccHHHHHHHHc---CChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcch----HHHHHHhccccccccCCCCCCH
Q 037245           20 TMDHELLNVLRR---GDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKV----IPEILRQQDSLLRKHNLKGETP   92 (215)
Q Consensus        20 ~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----~~~ll~~~~~~~~~~~~~g~t~   92 (215)
                      .+.+|||.|+..   |+.++++.|+++|+++ +..+..|.||||+|+..|+.++    ++.|++..+. .+..+  ..++
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~--~~~~  106 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND--FNIF  106 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC--cchH
Confidence            345679997555   8899999999999999 8899999999999999998654    5667654442 23333  2367


Q ss_pred             HHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCCccccc---cC
Q 037245           93 LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAV--RNKHENVVRMLVKKDRIPLGYIN---KA  167 (215)
Q Consensus        93 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~---~~  167 (215)
                      ++.|+..++.+++++|+++|+++            +..+..|+||||.++  ..++.+++++|+++|+++ +..+   ..
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gadi------------n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~  173 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFDL------------SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEY  173 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCCC------------CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccccccc
Confidence            77899999999999999999884            468889999999654  468999999999999987 4333   23


Q ss_pred             C-----------CcHHHHHHH-----------cCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          168 E-----------QTPLAIAID-----------SSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       168 ~-----------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |           .||||+|+.           .++.+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       174 g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             ccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHHHcCC
Confidence            3           599999986           46889999999999 9999999999999999999886

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.5e-28  Score=189.02  Aligned_cols=179  Identities=13%  Similarity=0.171  Sum_probs=145.5

Q ss_pred             ccHHHHHHHH-c-CChHHHHHHHhcccCcccccCCCCchHHHHHHHcC------CcchHHHHHHhccccccccCCCCCCH
Q 037245           21 MDHELLNVLR-R-GDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR------NHKVIPEILRQQDSLLRKHNLKGETP   92 (215)
Q Consensus        21 ~~~~l~~a~~-~-~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~------~~~~~~~ll~~~~~~~~~~~~~g~t~   92 (215)
                      +.++|+.++. . ++.++++.|+++|+++ +..+ .+.||||.|+..+      ..+++++|+ +.+++++.++..|.||
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~~g~tp  111 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAVLRNREITSNKIKKIVKLLL-KFGADINLKTFNGVSP  111 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHHHhccCcchhhHHHHHHHHH-HCCCCCCCCCCCCCcH
Confidence            3444654443 3 3789999999999999 7665 5789999998754      357899999 6788899999999999


Q ss_pred             HHHHHHh---CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhc--CCHHHHHHHHHcCCCCccccccC
Q 037245           93 LHIAARV---GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN--KHENVVRMLVKKDRIPLGYINKA  167 (215)
Q Consensus        93 l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~  167 (215)
                      ||.|+..   ++.+++++|+++|+++.           +..+..|+||||+|+..  ++.+++++|+++|+++....+..
T Consensus       112 L~~a~~~~~~~~~eiv~~Ll~~Gadin-----------~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~  180 (494)
T PHA02989        112 IVCFIYNSNINNCDMLRFLLSKGINVN-----------DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY  180 (494)
T ss_pred             HHHHHHhcccCcHHHHHHHHHCCCCcc-----------cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc
Confidence            9988765   67899999999998852           25788999999998754  58999999999999984336788


Q ss_pred             CCcHHHHHHHcC----CHHHHHHHHHhCCCCcc--------------------------------------ccCccCccH
Q 037245          168 EQTPLAIAIDSS----LTDIACFIIDQRPDSLD--------------------------------------HRLPEELTL  205 (215)
Q Consensus       168 ~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~--------------------------------------~~~~~g~t~  205 (215)
                      |.||||+|++.+    +.+++++|+++| ++++                                      .+|..|.||
T Consensus       181 g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~Tp  259 (494)
T PHA02989        181 GLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNP  259 (494)
T ss_pred             CCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCH
Confidence            999999997764    899999999998 5544                                      445668899


Q ss_pred             HHHHHHhCC
Q 037245          206 LHSAVMRQN  214 (215)
Q Consensus       206 l~~A~~~~~  214 (215)
                      ||+|+..|+
T Consensus       260 L~~Aa~~~~  268 (494)
T PHA02989        260 LLISAKVDN  268 (494)
T ss_pred             HHHHHHhcC
Confidence            999988775

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=7.8e-29  Score=202.44  Aligned_cols=188  Identities=23%  Similarity=0.244  Sum_probs=147.9

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcC-CcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR-NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      |||.|+..++..+++.+++++++. +..+..|.|++|+|+..+ ..+....++ +.+.+++.....|.||||+|...|+.
T Consensus       410 plh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~-~~g~~~n~~s~~G~T~Lhlaaq~Gh~  487 (1143)
T KOG4177|consen  410 PLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLL-QYGADPNAVSKQGFTPLHLAAQEGHT  487 (1143)
T ss_pred             eeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHh-hcCCCcchhccccCcchhhhhccCCc
Confidence            366666666666666666666666 666777777777777776 555555555 56666777777777777777777777


Q ss_pred             HHHHHHHhhcccccCCCCCC---------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCc
Q 037245          103 AIVSTILNYVPAITNGTESE---------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL  161 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  161 (215)
                      +++..|++.++.........                     .+..++.++..+.||||.|+.+|+.++|++|+++|++. 
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-  566 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-  566 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-
Confidence            77777777663322222211                     34556788899999999999999999999999999998 


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCCC
Q 037245          162 GYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY  215 (215)
Q Consensus       162 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~  215 (215)
                      +.++..|+||||.|+..|+.+++++|+++| +++|..+.+|.|||++|++.|.+
T Consensus       567 ~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA~~lg~~  619 (1143)
T KOG4177|consen  567 NAKDKLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPLHIAVRLGYL  619 (1143)
T ss_pred             cccCCCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchhHHHHHhccc
Confidence            788899999999999999999999999999 99999999999999999999864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=5.9e-28  Score=178.09  Aligned_cols=155  Identities=19%  Similarity=0.216  Sum_probs=145.8

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      -.+.+||..|+..|+.++|+.|+.+++++ |.......|||.-||.-|+++++++|+ .++++++..+..|.|.|++||.
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLv-E~gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLV-EHGADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHH-HcCCCCcccccCCCeeEEeeec
Confidence            44567899999999999999999999998 888888899999999999999999999 7888999999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS  178 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  178 (215)
                      .|+.+++++|++.|++            +|.++..|+|+||.++..|+++++++|+.+|+.+  .+|..|.|||..|+..
T Consensus       160 kGh~~I~qyLle~gAD------------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGAD------------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVT  225 (615)
T ss_pred             cCchHHHHHHHHhCCC------------cchhcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhh
Confidence            9999999999999988            4578999999999999999999999999999987  3888899999999999


Q ss_pred             CCHHHHHHHHH
Q 037245          179 SLTDIACFIID  189 (215)
Q Consensus       179 ~~~~~~~~Ll~  189 (215)
                      |..++|++|++
T Consensus       226 G~~~iVe~L~~  236 (615)
T KOG0508|consen  226 GHTDIVERLLQ  236 (615)
T ss_pred             cchHHHHHHhc
Confidence            99999999995

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.9e-27  Score=176.27  Aligned_cols=165  Identities=16%  Similarity=0.072  Sum_probs=142.7

Q ss_pred             hhccHHHHHHHH--cCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcccccccc-----CCCCCC
Q 037245           19 ATMDHELLNVLR--RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKH-----NLKGET   91 (215)
Q Consensus        19 ~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~-----~~~g~t   91 (215)
                      ...+++||.++.  .|+.+++++|+++|+++ +..  .+.||||.|+..++.+++++|++.+..+.+..     +..+.+
T Consensus       114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t  190 (437)
T PHA02795        114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYT  190 (437)
T ss_pred             ccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccc
Confidence            446788999999  99999999999999999 653  45899999999999999999995543333322     234789


Q ss_pred             HHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcH
Q 037245           92 PLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP  171 (215)
Q Consensus        92 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  171 (215)
                      ++|.|...++.+++++|+++|+++            +.++..|.||||+|+..|+.+++++|+++|+++ +.++..|.||
T Consensus       191 ~l~~a~~~~~~eIve~LIs~GADI------------N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~~G~Tp  257 (437)
T PHA02795        191 RGFLVDEPTVLEIYKLCIPYIEDI------------NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMSNGYTC  257 (437)
T ss_pred             hhHHHHhcCHHHHHHHHHhCcCCc------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCH
Confidence            999999999999999999999884            468999999999999999999999999999997 7899999999


Q ss_pred             HHHHHHcCC--------HHHHHHHHHhCCCCccccCc
Q 037245          172 LAIAIDSSL--------TDIACFIIDQRPDSLDHRLP  200 (215)
Q Consensus       172 l~~a~~~~~--------~~~~~~Ll~~g~~~~~~~~~  200 (215)
                      ||+|+..|+        .+++++|+++| ++++....
T Consensus       258 Lh~Aa~~g~~~~~~~~~~eIvelLL~~g-adI~~~~~  293 (437)
T PHA02795        258 LDVAVDRGSVIARRETHLKILEILLREP-LSIDCIKL  293 (437)
T ss_pred             HHHHHHcCCcccccccHHHHHHHHHhCC-CCCCchhH
Confidence            999999984        69999999999 77766543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.3e-26  Score=159.53  Aligned_cols=144  Identities=12%  Similarity=0.122  Sum_probs=124.2

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC--CHHHHHHHHhhcccccCCCCCCccccccc
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG--DPAIVSTILNYVPAITNGTESEPESLLRI  129 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  129 (215)
                      ...+.+|||.|+..++.++|+.|++.    .+..+..|.||||+|+..+  +.+++++|+++|+++.            .
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn------------~   81 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN------------F   81 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC------------c
Confidence            35578999999999999999999843    4567889999999999865  8999999999998854            4


Q ss_pred             cC-CCCCcHHHHHHhc---CCHHHHHHHHHcCCCCccccccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCccccCccCc
Q 037245          130 TD-DEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYINKAEQTPLAIAID--SSLTDIACFIIDQRPDSLDHRLPEEL  203 (215)
Q Consensus       130 ~~-~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~g~  203 (215)
                      .+ ..|.||||+|+..   +..+++++|+++|+++ +.++..|.||||.|+.  .++.+++++|+++| ++++.+|..|.
T Consensus        82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~  159 (209)
T PHA02859         82 KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNN  159 (209)
T ss_pred             cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCC
Confidence            54 5799999998753   4799999999999997 7899999999999876  46899999999999 99999999999


Q ss_pred             cHHHHH-HHhC
Q 037245          204 TLLHSA-VMRQ  213 (215)
Q Consensus       204 t~l~~A-~~~~  213 (215)
                      ||||.+ +..+
T Consensus       160 t~Lh~~a~~~~  170 (209)
T PHA02859        160 NILYSYILFHS  170 (209)
T ss_pred             cHHHHHHHhcC
Confidence            999965 4444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=177.40  Aligned_cols=182  Identities=12%  Similarity=0.021  Sum_probs=145.1

Q ss_pred             hhccHHHHHHHHcC---ChHHHHHHHhcccCcccccCCCCchHHHHHHHcC--CcchHHHHHHhc-cccccccCCCCCCH
Q 037245           19 ATMDHELLNVLRRG---DEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRQQ-DSLLRKHNLKGETP   92 (215)
Q Consensus        19 ~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~ll~~~-~~~~~~~~~~g~t~   92 (215)
                      ..+.+|||+|+..|   +.+++++|+++|+++ +.+|..|.||||+|+..+  +.+++++|++.+ ++..+..+..+.+|
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            45678899999997   599999999999999 999999999999999977  799999999543 34456677778999


Q ss_pred             HHHHHH--hCCHHHHHHHHh-hcccccCCCCCCcccccccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCc------c
Q 037245           93 LHIAAR--VGDPAIVSTILN-YVPAITNGTESEPESLLRIT-DDEGNTPLHNAVRNKHENVVRMLVKKDRIPL------G  162 (215)
Q Consensus        93 l~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~------~  162 (215)
                      |+.++.  +++.+++++|++ .+.++...        .+.. +..|.+|++++...+.++++++|+++|+...      .
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~--------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKN--------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhh--------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            999988  889999999997 44453321        0111 1378999999999999999999999999872      1


Q ss_pred             ccccCCC-cHHHHH------HHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          163 YINKAEQ-TPLAIA------IDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       163 ~~~~~~~-t~l~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      ..+.... |.||++      ...++.+++++|+++| +++|.+|..|.||||++.
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~~G~TpLh~~~  243 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDEGGSLPIQYYW  243 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH
Confidence            1233333 444433      3556899999999999 999999999999999643

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=4.3e-26  Score=152.95  Aligned_cols=185  Identities=16%  Similarity=0.125  Sum_probs=161.3

Q ss_pred             CCCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCC
Q 037245           11 PTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE   90 (215)
Q Consensus        11 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~   90 (215)
                      .-++..++. +-.+++.++-+++...++.++..+... +..+..+.+|+.+++...+++.+..+.   ...++..|..|.
T Consensus        87 ~~~~~t~p~-g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~Gf  161 (296)
T KOG0502|consen   87 DAIDETDPE-GWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEFGF  161 (296)
T ss_pred             CCCCCCCch-hhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHh---hccccCccccCc
Confidence            344444444 444588899999999999999999888 888999999999999888777775544   456788999999


Q ss_pred             CHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCc
Q 037245           91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT  170 (215)
Q Consensus        91 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  170 (215)
                      |||.+|+..|++.+|++|++.|+++.            ..-+...++|.+|++.|.+++++.|+.++.+. |..|.+|-|
T Consensus       162 TpLiWAaa~G~i~vV~fLL~~GAdp~------------~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgT  228 (296)
T KOG0502|consen  162 TPLIWAAAKGHIPVVQFLLNSGADPD------------ALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGT  228 (296)
T ss_pred             hHhHHHHhcCchHHHHHHHHcCCChh------------hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCc
Confidence            99999999999999999999998843            56677889999999999999999999999987 899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          171 PLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       171 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ||.+|++.++.++++.|+..| +++++.+..|++++..|+..|+
T Consensus       229 pLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhh
Confidence            999999999999999999999 9999999999999999998774

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=5.6e-25  Score=148.99  Aligned_cols=145  Identities=20%  Similarity=0.189  Sum_probs=117.2

Q ss_pred             cccCcccccCCCCchHHHHHHHcCCc----chHHHHHHhccccccccCCCCCCHHHHHHHhCCHHH---HHHHHhhcccc
Q 037245           43 RMQNIFSTMSPRGNTVLHMAIRFRNH----KVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAI---VSTILNYVPAI  115 (215)
Q Consensus        43 ~~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~---~~~Ll~~~~~~  115 (215)
                      ++.++ +..+..+.++||.||+.|+.    +++++|+ ..+..++.+|..|+||||+|+..|+.+.   +++|+++|+++
T Consensus         9 ~~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            34555 55677788899999999887    4455555 5666778888899999999999887654   78999998774


Q ss_pred             cCCCCCCccccccccC-CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 037245          116 TNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD  193 (215)
Q Consensus       116 ~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  193 (215)
                      .            .++ ..|.||||+|+..++.+++++|+. .|+++ +.++..|.||||+|+..++.+++++|+++| +
T Consensus        87 n------------~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a  152 (166)
T PHA02743         87 N------------ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANG-A  152 (166)
T ss_pred             C------------CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-C
Confidence            3            566 479999999999999999999995 67776 678889999999999999999999999999 8


Q ss_pred             CccccCccCc
Q 037245          194 SLDHRLPEEL  203 (215)
Q Consensus       194 ~~~~~~~~g~  203 (215)
                      +++.++..|.
T Consensus       153 ~~~~~~~~~~  162 (166)
T PHA02743        153 VCDDPLSIGL  162 (166)
T ss_pred             CCCCcccCCc
Confidence            8888887664

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=7.7e-26  Score=162.01  Aligned_cols=154  Identities=20%  Similarity=0.242  Sum_probs=139.2

Q ss_pred             ccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh-----CCHHHHHHHHhhcccccCCCCCC
Q 037245           48 FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV-----GDPAIVSTILNYVPAITNGTESE  122 (215)
Q Consensus        48 ~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~~~  122 (215)
                      +|..|.+|.|+||+++.++++++|+.||+.+-.+++.++.-|+||+++++..     .+.++|.-|++.| +++.     
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNa-----  334 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNA-----  334 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccch-----
Confidence            3678999999999999999999999999999999999999999999998764     4678899999877 3222     


Q ss_pred             ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccC
Q 037245          123 PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEE  202 (215)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g  202 (215)
                            .....|+|+|++|+.+|+.++++.|+..|++. |..|.+|.|+|+.|++.|+.+|+++|+....++....|.+|
T Consensus       335 ------KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  335 ------KASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             ------hhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCC
Confidence                  13457999999999999999999999999998 89999999999999999999999999999889999999999


Q ss_pred             ccHHHHHHHhCC
Q 037245          203 LTLLHSAVMRQN  214 (215)
Q Consensus       203 ~t~l~~A~~~~~  214 (215)
                      -|+|.+|...|.
T Consensus       408 STAl~IAleagh  419 (452)
T KOG0514|consen  408 STALSIALEAGH  419 (452)
T ss_pred             chhhhhHHhcCc
Confidence            999999998874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.4e-24  Score=179.70  Aligned_cols=146  Identities=26%  Similarity=0.273  Sum_probs=133.2

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD  131 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  131 (215)
                      +..+.++|+.||..|+.++++.|+ +.+.+++..|..|.||||+|+..|+.+++++|+++|+++            +.+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi------------n~~d  588 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV------------HIRD  588 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC------------CCcC
Confidence            445679999999999999999999 678889999999999999999999999999999999874            4688


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHH
Q 037245          132 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM  211 (215)
Q Consensus       132 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~  211 (215)
                      .+|+||||.|+..|+.+++++|+..++..   ....+.++||.|+..|+.+++++|+++| ++++.+|..|.||||+|+.
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999877654   2345779999999999999999999999 9999999999999999999


Q ss_pred             hCC
Q 037245          212 RQN  214 (215)
Q Consensus       212 ~~~  214 (215)
                      .|+
T Consensus       665 ~g~  667 (823)
T PLN03192        665 EDH  667 (823)
T ss_pred             CCc
Confidence            886

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.7e-24  Score=170.75  Aligned_cols=182  Identities=16%  Similarity=0.165  Sum_probs=131.0

Q ss_pred             hhhccHHHHHHH------HcCChHHHHHHHhcccCcccccCCCCchHHHH--HHHcCCcchHHHHHH-----------h-
Q 037245           18 PATMDHELLNVL------RRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHM--AIRFRNHKVIPEILR-----------Q-   77 (215)
Q Consensus        18 ~~~~~~~l~~a~------~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~~~~ll~-----------~-   77 (215)
                      .+..+|.||+.+      ..+..++++.|+++|+++ +.+|..|.||||+  +...++.+++++|++           . 
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~  271 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQ  271 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccc
Confidence            344556677443      457889999999999999 9999999999995  555577999999996           0 


Q ss_pred             -------------------ccccccc--------------------cCCCCCC---------------------HHHHHH
Q 037245           78 -------------------QDSLLRK--------------------HNLKGET---------------------PLHIAA   97 (215)
Q Consensus        78 -------------------~~~~~~~--------------------~~~~g~t---------------------~l~~a~   97 (215)
                                         .+.++..                    .+..|.+                     .||.-.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~  351 (672)
T PHA02730        272 PYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYL  351 (672)
T ss_pred             hhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHH
Confidence                               3444333                    4555654                     677777


Q ss_pred             HhC---CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC----HHHHHHHHHcCCC-CccccccCCC
Q 037245           98 RVG---DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKDRI-PLGYINKAEQ  169 (215)
Q Consensus        98 ~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~-~~~~~~~~~~  169 (215)
                      ..+   +.+++++|+++|+++.            .. ..|.||||+|+..+.    .+++++|+++|+. +.+..+..|.
T Consensus       352 ~~~~~v~ieIvelLIs~GAdIN------------~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~  418 (672)
T PHA02730        352 HYGDMVSIPILRCMLDNGATMD------------KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGR  418 (672)
T ss_pred             hcCCcCcHHHHHHHHHCCCCCC------------cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCC
Confidence            755   5899999999998855            32 567888887777664    7888888888763 3466777788


Q ss_pred             cHHHH---HHHcC---------CHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          170 TPLAI---AIDSS---------LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       170 t~l~~---a~~~~---------~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ||||.   |...+         ..+++++|+++| ++++.+|..|.||||+|+..++
T Consensus       419 T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-ADINakD~~G~TPLh~Aa~~~~  474 (672)
T PHA02730        419 LCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-DDIDMIDNENKTLLYYAVDVNN  474 (672)
T ss_pred             chHhHHHHHHhccccccccchhHHHHHHHHHhcc-cchhccCCCCCCHHHHHHHhCC
Confidence            88873   32221         234578888888 7788888888888888877654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-25  Score=167.35  Aligned_cols=184  Identities=22%  Similarity=0.229  Sum_probs=166.4

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      .+..|+..|+.+-++.|+..++.+ +..+.+|.|+||.+|...+.+||++|+ ..++.++..|..++||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccccCCcchhhcccccHH
Confidence            467888899999999999999999 999999999999999999999999999 778899999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCCC-----------------------------------------------ccccccccCCCCCc
Q 037245          104 IVSTILNYVPAITNGTESE-----------------------------------------------PESLLRITDDEGNT  136 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~  136 (215)
                      ++++|+++|+++.+.....                                               -+.+.+..+..|.|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            9999999999865544443                                               22334455667999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHH
Q 037245          137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM  211 (215)
Q Consensus       137 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~  211 (215)
                      .||.|+..|..++++.|+++|... +.+|..|+||||.|+.-|..+++++|+++| ++.+.....|.||+..|..
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhh-cccchhhhcCCCCccchhh
Confidence            999999999999999999999998 789999999999999999999999999999 9999999999999988754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=3.7e-24  Score=176.11  Aligned_cols=186  Identities=19%  Similarity=0.157  Sum_probs=143.7

Q ss_pred             hhhccHHHHHHHHcCChHHHHHHHhc--ccCcccccCCCCchHHH-HHHHcCCcchHHHHHHhccccccccCCCCCCHHH
Q 037245           18 PATMDHELLNVLRRGDEHQIRPIAGR--MQNIFSTMSPRGNTVLH-MAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLH   94 (215)
Q Consensus        18 ~~~~~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~   94 (215)
                      .......++.|+..|+.+.++.++++  +.++ +..|..|.|||| .|+..++.++++.|++ .+.    ++..|.||||
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~-~g~----~~~~G~T~Lh   87 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLN-LSC----RGAVGDTLLH   87 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHh-CCC----CCCcChHHHH
Confidence            34555679999999999999999998  7788 888999999999 8888889999998884 443    6778999999


Q ss_pred             HHHHhC---CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc------
Q 037245           95 IAARVG---DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN------  165 (215)
Q Consensus        95 ~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~------  165 (215)
                      .|+..+   ...++..+...+.+....  ..........+..|.||||+|+..++.+++++|+++|+++ +.+.      
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~  164 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPL--ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFV  164 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCch--hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhh
Confidence            998732   223333333333210000  0000001122457999999999999999999999999887 3331      


Q ss_pred             --------cCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          166 --------KAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       166 --------~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                              ..|.||||.|+..++.+++++|+++| ++++.+|..|+||||+|+..+
T Consensus       165 ~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       165 KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhh
Confidence                    35899999999999999999999999 999999999999999998875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=1.4e-24  Score=177.92  Aligned_cols=175  Identities=21%  Similarity=0.218  Sum_probs=145.1

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      -++||+|+..|+.++++.+++.++.. +.....+.+++|.|...+....++.++ ..+..++.++..|+||||.|+.+|+
T Consensus       475 ~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~-~~ga~v~~~~~r~~TpLh~A~~~g~  552 (1143)
T KOG4177|consen  475 FTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILL-EHGANVDLRTGRGYTPLHVAVHYGN  552 (1143)
T ss_pred             CcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHh-hcCCceehhcccccchHHHHHhcCC
Confidence            34466666666666666666666555 555566666666666666666666666 5567788889999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .++|++|+++|++..            .++..|+||||.|+..|..++++.|+++|+.+ +..+.+|.|||+.|++.|..
T Consensus       553 v~~VkfLLe~gAdv~------------ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-na~d~~g~TpL~iA~~lg~~  619 (1143)
T KOG4177|consen  553 VDLVKFLLEHGADVN------------AKDKLGYTPLHQAAQQGHNDIAELLLKHGASV-NAADLDGFTPLHIAVRLGYL  619 (1143)
T ss_pred             chHHHHhhhCCcccc------------ccCCCCCChhhHHHHcChHHHHHHHHHcCCCC-CcccccCcchhHHHHHhccc
Confidence            999999999999855            57899999999999999999999999999998 89999999999999999999


Q ss_pred             HHHHHHHHhCCCC-----ccccCccCccHHHHHHHh
Q 037245          182 DIACFIIDQRPDS-----LDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       182 ~~~~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~  212 (215)
                      ++++.|+..+ +.     .......|.+|...+..+
T Consensus       620 ~~~k~l~~~~-~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  620 SVVKLLKVVT-ATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             chhhHHHhcc-CccccccchhhhhcccChhhHHHHh
Confidence            9999999999 66     677788999999877554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.2e-23  Score=163.02  Aligned_cols=180  Identities=14%  Similarity=0.102  Sum_probs=143.2

Q ss_pred             chhhccHHHHHHHHcC-------ChHHHHHHHhcccCcccccCCCCchHHHHHHHcC--CcchHHHHHHhccc-------
Q 037245           17 LPATMDHELLNVLRRG-------DEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFR--NHKVIPEILRQQDS-------   80 (215)
Q Consensus        17 ~~~~~~~~l~~a~~~~-------~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~ll~~~~~-------   80 (215)
                      ++..+.+|||+|+..+       +.++++.|+++|+++ +..|..|.||||+|+.+.  +.++++.|++....       
T Consensus       171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~  249 (631)
T PHA02792        171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNI  249 (631)
T ss_pred             CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhH
Confidence            3344677899999999       899999999999999 889999999999999998  66777777652100       


Q ss_pred             --------------c-----------------------------------------------------------------
Q 037245           81 --------------L-----------------------------------------------------------------   81 (215)
Q Consensus        81 --------------~-----------------------------------------------------------------   81 (215)
                                    .                                                                 
T Consensus       250 l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId  329 (631)
T PHA02792        250 LSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMID  329 (631)
T ss_pred             HHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence                          0                                                                 


Q ss_pred             --ccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCC--CCcHHHHHHhcCCH---HHHHHHH
Q 037245           82 --LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE--GNTPLHNAVRNKHE---NVVRMLV  154 (215)
Q Consensus        82 --~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~~~~---~~~~~ll  154 (215)
                        .+........+++.|+..++.+++++|+++|+++            +..|..  +.||||.|+.....   +++++++
T Consensus       330 ~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI------------N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI  397 (631)
T PHA02792        330 EGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV------------VEDDDNIINIMPLFPTLSIHESDVLSILKLCK  397 (631)
T ss_pred             CCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch------------hhhcCCCCChhHHHHHHHhccHhHHHHHHHHH
Confidence              0000112345566777777777777777777774            355655  46999988776654   4688899


Q ss_pred             HcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHH
Q 037245          155 KKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM  211 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~  211 (215)
                      ++|+++ +.++..|.||||+|+..++.+++++|+++| ++++.++..|.|||++|+.
T Consensus       398 s~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        398 PYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             hcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            999987 789999999999999999999999999999 9999999999999999975

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.5e-23  Score=168.46  Aligned_cols=185  Identities=15%  Similarity=-0.003  Sum_probs=141.2

Q ss_pred             hccHHHHHHHHcCChH----HHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHH
Q 037245           20 TMDHELLNVLRRGDEH----QIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHI   95 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~   95 (215)
                      .+.+|||.|+..|+.+    +++.|++++... +..+  ..+++++|+..++.+++++|+ ..+++++.+|..|.||||.
T Consensus        67 ~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll-~~Gadin~~d~~g~T~L~~  142 (661)
T PHA02917         67 RQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLV-EHGFDLSVKCENHRSVIEN  142 (661)
T ss_pred             CCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHH-HcCCCCCccCCCCccHHHH
Confidence            3456699999999854    557787765433 3333  236778899999999999999 6789999999999999996


Q ss_pred             HH--HhCCHHHHHHHHhhcccccCCCCC-Cccc-cccccCCCCCcHHHHHHh-----------cCCHHHHHHHHHcCCCC
Q 037245           96 AA--RVGDPAIVSTILNYVPAITNGTES-EPES-LLRITDDEGNTPLHNAVR-----------NKHENVVRMLVKKDRIP  160 (215)
Q Consensus        96 a~--~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~a~~-----------~~~~~~~~~ll~~~~~~  160 (215)
                      ++  ..++.+++++|+++|+++...... ..+. ..+.....+.||||+|+.           .++.+++++|+++|+++
T Consensus       143 ~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv  222 (661)
T PHA02917        143 YVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP  222 (661)
T ss_pred             HHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc
Confidence            54  578999999999999986532110 0000 011223345699999986           45789999999999997


Q ss_pred             ccccccCCCcHHHHHHHcCCH--HHHHHHHHhCCCCcc----ccCccCccHHHHHHH
Q 037245          161 LGYINKAEQTPLAIAIDSSLT--DIACFIIDQRPDSLD----HRLPEELTLLHSAVM  211 (215)
Q Consensus       161 ~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~g~~~~~----~~~~~g~t~l~~A~~  211 (215)
                       +.++..|.||||+|+..|+.  +++++|++ | ++++    ..+..|.+|+++|+.
T Consensus       223 -n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g-~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        223 -SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-G-IDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             -ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-C-CcccccccccCcccccchHHHHH
Confidence             88999999999999999985  79999984 7 5554    566778899998883

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.2e-23  Score=142.45  Aligned_cols=132  Identities=15%  Similarity=0.183  Sum_probs=113.8

Q ss_pred             HHHHHHHHcCCh----HHHHHHHhcccCcccccCCCCchHHHHHHHcCCcch---HHHHHHhccccccccC-CCCCCHHH
Q 037245           23 HELLNVLRRGDE----HQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKV---IPEILRQQDSLLRKHN-LKGETPLH   94 (215)
Q Consensus        23 ~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---~~~ll~~~~~~~~~~~-~~g~t~l~   94 (215)
                      .+||.|++.|+.    +++++|++.+..+ +..|..|+||||+|+..++.+.   +++|+ ..+++++.++ ..|.||||
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll-~~Gadin~~d~~~g~TpLh   99 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLV-NMGADINARELGTGNTLLH   99 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHH-HcCCCCCCCCCCCCCcHHH
Confidence            359999999998    5666777888887 8889999999999999988775   67888 6778889888 58999999


Q ss_pred             HHHHhCCHHHHHHHHh-hcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCC
Q 037245           95 IAARVGDPAIVSTILN-YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQ  169 (215)
Q Consensus        95 ~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  169 (215)
                      +|+..++.+++++|++ .|+++            +..+..|.||||+|+..++.+++++|+++|++. +.++..|.
T Consensus       100 ~A~~~g~~~iv~~Ll~~~gad~------------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~  162 (166)
T PHA02743        100 IAASTKNYELAEWLCRQLGVNL------------GAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIGL  162 (166)
T ss_pred             HHHHhCCHHHHHHHHhccCCCc------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCCc
Confidence            9999999999999995 78774            467889999999999999999999999999887 66666553

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=9.8e-24  Score=143.53  Aligned_cols=130  Identities=19%  Similarity=0.303  Sum_probs=114.4

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHh-----ccccccccCCCCCCHHHHHHHhCC----HHHHHHHHhhcccccCCC
Q 037245           49 STMSPRGNTVLHMAIRFRNHKVIPEILRQ-----QDSLLRKHNLKGETPLHIAARVGD----PAIVSTILNYVPAITNGT  119 (215)
Q Consensus        49 ~~~~~~g~t~L~~A~~~~~~~~~~~ll~~-----~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~  119 (215)
                      +.++..|.||||+|+..|+.++++.|+..     .+..++.+|..|.||||+|+..|+    .+++++|+++|+++.   
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin---   91 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN---   91 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC---
Confidence            45677899999999999999999988642     246788899999999999999998    588999999998743   


Q ss_pred             CCCccccccccCC-CCCcHHHHHHhcCCHHHHHHHHHc-CCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          120 ESEPESLLRITDD-EGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       120 ~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                               .++. .|+||||+|+..++.+++++|+.. ++++ +..+..|.|||++|+..++.+++++|++.+
T Consensus        92 ---------~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         92 ---------AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             ---------CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence                     5564 899999999999999999999984 7765 788999999999999999999999999987

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.1e-23  Score=153.14  Aligned_cols=155  Identities=16%  Similarity=0.127  Sum_probs=132.1

Q ss_pred             CCcchhhccHHHHHHHHcCChHHHHHHHhcccCccccc----CCCCchHHHHHHHcCCcchHHHHHHhcccccccc-CCC
Q 037245           14 DQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTM----SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKH-NLK   88 (215)
Q Consensus        14 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~-~~~   88 (215)
                      ...+..+.+++|+.|+..|+.+++++|+++|+++ +.+    +..|.||||+|+..++.+++++|+ ..+++++.+ +..
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~  103 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEA  103 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCC
Confidence            4456678889999999999999999999999998 765    458999999999999999999999 678889875 467


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCC
Q 037245           89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE  168 (215)
Q Consensus        89 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  168 (215)
                      |.||||.|+..++.+++++|+++|+++.            ..+..|.||||+|+..++..++..+...      ..+..+
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin------------~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~  165 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADIN------------IQTNDMVTPIELALMICNNFLAFMICDN------EISNFY  165 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC------------CCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccc
Confidence            9999999999999999999999998844            6788999999999998888877665532      244556


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhC
Q 037245          169 QTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       169 ~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      .+|++.+   ++.+++++|+.++
T Consensus       166 ~~~~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        166 KHPKKIL---INFDILKILVSHF  185 (300)
T ss_pred             cChhhhh---ccHHHHHHHHHHH
Confidence            7788765   3679999999988

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=8.6e-25  Score=146.73  Aligned_cols=165  Identities=20%  Similarity=0.144  Sum_probs=144.6

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      ++.+++...+.+.+..+.+..   .|..|+.|.|||.||+..|+++.|++|| ..++++..-.....++|.+|++.|..+
T Consensus       132 ~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lgk~resALsLAt~ggytd  207 (296)
T KOG0502|consen  132 PLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALGKYRESALSLATRGGYTD  207 (296)
T ss_pred             hhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhhhhhhhhHhHHhcCChHH
Confidence            577888777766655544443   3778999999999999999999999999 678888888889999999999999999


Q ss_pred             HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHH
Q 037245          104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDI  183 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  183 (215)
                      +|++|+.++.+            +|..|.+|-|||.+|++.++.++++.|+..|++. ...+..|++++..|+..|+. +
T Consensus       208 iV~lLL~r~vd------------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~-t~e~dsGy~~mdlAValGyr-~  273 (296)
T KOG0502|consen  208 IVELLLTREVD------------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV-TQEDDSGYWIMDLAVALGYR-I  273 (296)
T ss_pred             HHHHHHhcCCC------------cceeccCCCceeeeeecCChHHHHHHHHhcCCCc-ccccccCCcHHHHHHHhhhH-H
Confidence            99999999988            4578999999999999999999999999999998 67889999999999999987 8


Q ss_pred             HHHHHHhCCCCccccCccCccHHH
Q 037245          184 ACFIIDQRPDSLDHRLPEELTLLH  207 (215)
Q Consensus       184 ~~~Ll~~g~~~~~~~~~~g~t~l~  207 (215)
                      |+..+++- ...+.++..-.+|+|
T Consensus       274 Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  274 VQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHH-HHHHhhcccCCCCCC
Confidence            99999888 777778877777764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=2.3e-23  Score=171.47  Aligned_cols=194  Identities=15%  Similarity=0.071  Sum_probs=141.0

Q ss_pred             CCCCcchhhccHHHH-HHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcc----hHHHHHHhccc------
Q 037245           12 TMDQELPATMDHELL-NVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHK----VIPEILRQQDS------   80 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~ll~~~~~------   80 (215)
                      +++..+.. +.+||| .|+..++.++++.|++++.     .+..|.||||.|+.. ..+    ++..+......      
T Consensus        44 ~in~~d~~-G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~  116 (743)
T TIGR00870        44 NINCPDRL-GRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGPLEL  116 (743)
T ss_pred             CCCCcCcc-chhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCchhh
Confidence            34444444 445699 8889999999999999886     467799999999872 233    33333322211      


Q ss_pred             ---cccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccc--ccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 037245           81 ---LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR--ITDDEGNTPLHNAVRNKHENVVRMLVK  155 (215)
Q Consensus        81 ---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~ll~  155 (215)
                         ........|.||||+|+..|+.+++++|+++|++++..........-.  .....|.+|||.|+..++.+++++|++
T Consensus       117 ~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~  196 (743)
T TIGR00870       117 ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE  196 (743)
T ss_pred             hccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc
Confidence               011123469999999999999999999999999876422111000000  112468999999999999999999999


Q ss_pred             cCCCCccccccCCCcHHHHHHHcC---------CHHHHHHHHHhCCCC---c----cccCccCccHHHHHHHhCC
Q 037245          156 KDRIPLGYINKAEQTPLAIAIDSS---------LTDIACFIIDQRPDS---L----DHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 ~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~g~~~---~----~~~~~~g~t~l~~A~~~~~  214 (215)
                      +|+++ +..|..|+||||+|+..+         ...+.+++++.+ +.   .    ++.|.+|.||||+|+..|+
T Consensus       197 ~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll-~~~~~~~el~~i~N~~g~TPL~~A~~~g~  269 (743)
T TIGR00870       197 DPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL-DKLRDSKELEVILNHQGLTPLKLAAKEGR  269 (743)
T ss_pred             CCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hccCChHhhhhhcCCCCCCchhhhhhcCC
Confidence            99986 789999999999999886         234556666665 33   3    6789999999999999886

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=150.93  Aligned_cols=159  Identities=18%  Similarity=0.277  Sum_probs=139.7

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHc-----CCcchHHHHHHhccccccccCCCCCCHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRF-----RNHKVIPEILRQQDSLLRKHNLKGETPL   93 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~~~~ll~~~~~~~~~~~~~g~t~l   93 (215)
                      ..++++||+++..+++++|+.|++.|.+-++.++..|+||+++++..     .+.++|..|+ +.+...-.-...|+|+|
T Consensus       266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF-~mgnVNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF-KMGDVNAKASQHGQTAL  344 (452)
T ss_pred             CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH-hccCcchhhhhhcchhh
Confidence            34677899999999999999999999776699999999999999764     4567888888 55543333456899999


Q ss_pred             HHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHH
Q 037245           94 HIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA  173 (215)
Q Consensus        94 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  173 (215)
                      ++|+..|+.++++.|+..|++            +|.+|.+|-|+|+.|+.+|+.++++.|+.+........|.+|.|+|+
T Consensus       345 MLAVSHGr~d~vk~LLacgAd------------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~  412 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGAD------------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALS  412 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCC------------CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhh
Confidence            999999999999999999988            55799999999999999999999999999977777889999999999


Q ss_pred             HHHHcCCHHHHHHHHHh
Q 037245          174 IAIDSSLTDIACFIIDQ  190 (215)
Q Consensus       174 ~a~~~~~~~~~~~Ll~~  190 (215)
                      +|-..|+.+|.-+|-.+
T Consensus       413 IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  413 IALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHhcCchHHHHHHHHH
Confidence            99999999999888655

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.5e-22  Score=158.35  Aligned_cols=79  Identities=11%  Similarity=0.079  Sum_probs=67.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCC--CcHHHHHHHcCCH---HHHHHHHHhCCCCccccCccCccHHHH
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE--QTPLAIAIDSSLT---DIACFIIDQRPDSLDHRLPEELTLLHS  208 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~t~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~~~~g~t~l~~  208 (215)
                      ....++.|+..++.+++++|+++|+++ +.++..|  .||||.|+.....   +++++|+++| ++++.+|..|.||||+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~  416 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYY  416 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHH
Confidence            455688899999999999999999997 6677664  6999988776654   4688999999 9999999999999999


Q ss_pred             HHHhCC
Q 037245          209 AVMRQN  214 (215)
Q Consensus       209 A~~~~~  214 (215)
                      |+..++
T Consensus       417 Aa~~~n  422 (631)
T PHA02792        417 CIESHS  422 (631)
T ss_pred             HHHcCC
Confidence            998775

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=3.2e-23  Score=139.19  Aligned_cols=132  Identities=19%  Similarity=0.208  Sum_probs=107.6

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHh------ccccccccCCCCCCHHHHHHHhCCH---HHHHHHHhhcccccCCC
Q 037245           49 STMSPRGNTVLHMAIRFRNHKVIPEILRQ------QDSLLRKHNLKGETPLHIAARVGDP---AIVSTILNYVPAITNGT  119 (215)
Q Consensus        49 ~~~~~~g~t~L~~A~~~~~~~~~~~ll~~------~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~  119 (215)
                      +.+|..|.||||+|+..|+.  +..+...      .+..+..+|..|.||||+|+..++.   +++++|+++|+++.   
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin---   85 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN---   85 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc---
Confidence            45678899999999999973  2222211      1222445688999999999999987   46889999998744   


Q ss_pred             CCCccccccccC-CCCCcHHHHHHhcCCHHHHHHHHHc-CCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 037245          120 ESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD  196 (215)
Q Consensus       120 ~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  196 (215)
                               .++ ..|+||||+|+..++.+++++|+.+ ++++ +.++..|+||||+|+..++.+++++|+++| ++.+
T Consensus        86 ---------~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736         86 ---------GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             ---------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence                     566 5899999999999999999999985 6665 789999999999999999999999999999 7654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=2.4e-22  Score=130.19  Aligned_cols=143  Identities=22%  Similarity=0.256  Sum_probs=119.6

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      .+..|+..+....|+.|++..++.++.+|.+|+||||.|+..|+.+|++.|+ ..+++.+.+...|+||||.||.-.+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccchh
Confidence            4678889999999999999999888999999999999999999999999998 567788888899999999999999999


Q ss_pred             HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCccccccCCCcHHHHHHHcC
Q 037245          104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-ENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS  179 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~  179 (215)
                      ++..|+++|++++            .......||||.|+..++ ...+++|+......-...+..+.||+.+|.+.+
T Consensus       145 va~~LLqhgaDVn------------A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVN------------AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCccc------------ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999998854            567778899999987665 456677766544433567788899999998875

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=3e-22  Score=136.28  Aligned_cols=125  Identities=20%  Similarity=0.230  Sum_probs=105.6

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC----HHHHHHHHHcC
Q 037245           82 LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKD  157 (215)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~  157 (215)
                      ++.++..|.||||+|++.|+.++++.|+......      ..+..++.+|..|+||||+|+..++    .+++++|+++|
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g   87 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG   87 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            3457789999999999999999999986532000      0122355789999999999999998    58999999999


Q ss_pred             CCCcccccc-CCCcHHHHHHHcCCHHHHHHHHHh-CCCCccccCccCccHHHHHHHhCC
Q 037245          158 RIPLGYINK-AEQTPLAIAIDSSLTDIACFIIDQ-RPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       158 ~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++. +.++. .|.||||+|+..++.+++++|++. | .+++.++..|.||||+|+..++
T Consensus        88 adi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-~~~~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         88 ADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-IDLHFCNADNKSPFELAIDNED  144 (169)
T ss_pred             CCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCCHHHHHHHCCC
Confidence            987 67774 899999999999999999999985 7 8999999999999999998875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=5.9e-22  Score=128.41  Aligned_cols=143  Identities=22%  Similarity=0.186  Sum_probs=125.5

Q ss_pred             hHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCc
Q 037245           57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNT  136 (215)
Q Consensus        57 t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (215)
                      -.+.+|+..+....|+.||+.....++.+|.+|+||||-|+.+|+.++++.|+..|++..            .+...|||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~------------a~T~~GWT  132 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE------------AKTNEGWT  132 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc------------cccccCcc
Confidence            357889999999999999998889999999999999999999999999999999998854            57889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC-HHHHHHHHHhCCCCccccCccCccHHHHHHHh
Q 037245          137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL-TDIACFIIDQRPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       137 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      |||.||..++.+++.+|+++|+++ +....-..||||.|+...+ ...+.+|+......+...+..+.||+.+|-+-
T Consensus       133 PLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  133 PLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             chhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            999999999999999999999998 6777778999999987654 56667776554477788888999999998664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.2e-21  Score=141.23  Aligned_cols=139  Identities=15%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             ccCCCCch-HHHHHHHcCCcchHHHHHHhcccccccc----CCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcc
Q 037245           50 TMSPRGNT-VLHMAIRFRNHKVIPEILRQQDSLLRKH----NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPE  124 (215)
Q Consensus        50 ~~~~~g~t-~L~~A~~~~~~~~~~~ll~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  124 (215)
                      .+|..+.| +||.|+..++.+++++|+ +.|++++.+    +..|.||||+|+..++.+++++|+++|+++.        
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL-~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN--------   97 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAIL-KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN--------   97 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHH-HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC--------
Confidence            34555654 667777778999999999 667788876    4589999999999999999999999998854        


Q ss_pred             cccccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCc
Q 037245          125 SLLRIT-DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEEL  203 (215)
Q Consensus       125 ~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  203 (215)
                          .. +..|.||||.|+..++.+++++|+.+|+++ +.++..|.||||.|++.++.+++..+...+      .+..+.
T Consensus        98 ----~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~------~~~~~~  166 (300)
T PHA02884         98 ----RYAEEAKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDNE------ISNFYK  166 (300)
T ss_pred             ----cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCCc------cccccc
Confidence                43 457999999999999999999999999997 789999999999999998888876655332      344455


Q ss_pred             cHHHH
Q 037245          204 TLLHS  208 (215)
Q Consensus       204 t~l~~  208 (215)
                      +|+++
T Consensus       167 ~~~~~  171 (300)
T PHA02884        167 HPKKI  171 (300)
T ss_pred             Chhhh
Confidence            66654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-21  Score=151.97  Aligned_cols=189  Identities=19%  Similarity=0.185  Sum_probs=125.6

Q ss_pred             cchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHH
Q 037245           16 ELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHI   95 (215)
Q Consensus        16 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~   95 (215)
                      .+..+. ++||.|+.+|+.++++.|++..+-+ ...+..|.+|||+|+-.|+.++++.++ .....++.....|.||||.
T Consensus        45 qd~~gf-Talhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll-~q~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   45 QDYSGF-TLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLL-LQTDILNAVNIENETPLHL  121 (854)
T ss_pred             cCccch-hHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHH-hcccCCCcccccCcCccch
Confidence            333333 3488888888888888888877665 666777888888888888888888777 4446677777788888888


Q ss_pred             HHHhCCHHHHHHHHhhcccccCCCCCCccc---------------------------c--ccccCCCCCcHHHHHHhcCC
Q 037245           96 AARVGDPAIVSTILNYVPAITNGTESEPES---------------------------L--LRITDDEGNTPLHNAVRNKH  146 (215)
Q Consensus        96 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~---------------------------~--~~~~~~~~~~~l~~a~~~~~  146 (215)
                      |++.|+.+++.+|+++|++.....+.....                           .  -..++..+.+|+|.|++.|.
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            888888888888888887755332222000                           0  01223344566677777777


Q ss_pred             HHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          147 ENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       147 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      .++++.|++.|-++ +.. ...-|+||.|+..|..++|.+|++-| ....+++..|.|+|.+-.
T Consensus       202 ~~~~~~ll~ag~di-n~~-t~~gtalheaalcgk~evvr~ll~~g-in~h~~n~~~qtaldil~  262 (854)
T KOG0507|consen  202 VECMQALLEAGFDI-NYT-TEDGTALHEAALCGKAEVVRFLLEIG-INTHIKNQHGQTALDIII  262 (854)
T ss_pred             HHHHHHHHhcCCCc-ccc-cccchhhhhHhhcCcchhhhHHHhhc-cccccccccchHHHHHHH
Confidence            77777777666665 322 23346777777777777777777777 666677777777766543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=3.7e-21  Score=149.55  Aligned_cols=175  Identities=26%  Similarity=0.306  Sum_probs=153.5

Q ss_pred             HHHHHHHcCChHHHHHHHhccc-------------CcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCC
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQ-------------NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE   90 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~-------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~   90 (215)
                      -+..|++.|+.+.+..++++..             +. +..|..|.|+||.|+..|+.++++.|+ ...+.++..+..|.
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~-n~qd~~gfTalhha~Lng~~~is~lll-e~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSH-NLQDYSGFTLLHHAVLNGQNQISKLLL-DYEALLDLCDTKGI   83 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccc-cccCccchhHHHHHHhcCchHHHHHHh-cchhhhhhhhccCc
Confidence            4788999999999999998521             23 667889999999999999999999999 67778888999999


Q ss_pred             CHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCc
Q 037245           91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT  170 (215)
Q Consensus        91 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  170 (215)
                      +|||+|++.|+.++++.++..+..            +|..+..|.+|||.+++++..+++.+|+.+|+++ -.++..+.|
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~------------~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t  150 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDI------------LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKET  150 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccC------------CCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCccccc
Confidence            999999999999999999998844            4578889999999999999999999999999998 578899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCC--------ccccCccCccHHHHHHHhCC
Q 037245          171 PLAIAIDSSLTDIACFIIDQRPDS--------LDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       171 ~l~~a~~~~~~~~~~~Ll~~g~~~--------~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++.+|++.|..++++.|++.. ..        ...++..+-+|+|.|+++|.
T Consensus       151 ~ldlA~qfgr~~Vvq~ll~~~-~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  151 VLDLASRFGRAEVVQMLLQKK-FPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             HHHHHHHhhhhHHHHHHhhhc-cchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            999999999999999999774 22        23355677899999999874

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.6e-21  Score=128.71  Aligned_cols=123  Identities=16%  Similarity=0.137  Sum_probs=97.8

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCH---HHHHHHHHcCCC
Q 037245           83 RKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE---NVVRMLVKKDRI  159 (215)
Q Consensus        83 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~ll~~~~~  159 (215)
                      ..+|..|.||||+|++.|+.  +.++...+.....     ....++..|..|.||||+|+..+..   +++++|++.|++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~-----~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad   83 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE-----NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD   83 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch-----hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC
Confidence            45678899999999999983  3444333221100     0112335688999999999999876   468899999998


Q ss_pred             Cccccc-cCCCcHHHHHHHcCCHHHHHHHHHh-CCCCccccCccCccHHHHHHHhCC
Q 037245          160 PLGYIN-KAEQTPLAIAIDSSLTDIACFIIDQ-RPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       160 ~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      . +.++ ..|.||||+|+..++.+++++|+++ | .+++.++..|.||||+|+..|+
T Consensus        84 i-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-~d~n~~~~~g~tpL~~A~~~~~  138 (154)
T PHA02736         84 I-NGKERVFGNTPLHIAVYTQNYELATWLCNQPG-VNMEILNYAFKTPYYVACERHD  138 (154)
T ss_pred             c-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCCCCHHHHHHHcCC
Confidence            7 6777 5899999999999999999999985 7 9999999999999999998875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-21  Score=136.43  Aligned_cols=155  Identities=23%  Similarity=0.283  Sum_probs=117.3

Q ss_pred             HHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHH
Q 037245           27 NVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVS  106 (215)
Q Consensus        27 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  106 (215)
                      -=|+.|+.-.++..++....-++.-|..|.+||||||..|+..++..|+ ..++.++..+...-||||+|+..|+-++++
T Consensus         6 ~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    6 GWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHH
Confidence            3456666666666666554444778888999999999999999998888 567778888888889999999999999999


Q ss_pred             HHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHH
Q 037245          107 TILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACF  186 (215)
Q Consensus       107 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  186 (215)
                      .|+++.++            +|..+..|+||||+||..|...+.+-|+..|+.. +..+.+|.||+..|.-.-...+.+.
T Consensus        85 kll~~kad------------vnavnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkakp~l~~~l~e~  151 (448)
T KOG0195|consen   85 KLLSRKAD------------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAKPMLKNTLLEI  151 (448)
T ss_pred             HHHHHhcc------------cchhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhchHHHHHHHHH
Confidence            99888777            4468888999999999999988999999888886 6788889999887643322223333


Q ss_pred             HHHhCCCCcc
Q 037245          187 IIDQRPDSLD  196 (215)
Q Consensus       187 Ll~~g~~~~~  196 (215)
                      --+.| ..++
T Consensus       152 aek~g-q~~n  160 (448)
T KOG0195|consen  152 AEKHG-QSPN  160 (448)
T ss_pred             HHHhC-CCCC
Confidence            33445 5554

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.85  E-value=2.4e-20  Score=146.37  Aligned_cols=189  Identities=17%  Similarity=0.160  Sum_probs=154.4

Q ss_pred             HHHHHHHHcCChHHHHHHHhcc---------cCcccccCCCCchHHHHHHHc---CCcchHHHHHHhcccccc----ccC
Q 037245           23 HELLNVLRRGDEHQIRPIAGRM---------QNIFSTMSPRGNTVLHMAIRF---RNHKVIPEILRQQDSLLR----KHN   86 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~---------~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~~~----~~~   86 (215)
                      .++..|...+..+.+..+...+         .+. +.+...|.|+||.|...   ++.++++.|++-.+..++    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            5688888899998888877765         233 56677899999999874   445788888876654443    234


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccccc-----------CCCCCcHHHHHHhcCCHHHHHHHHH
Q 037245           87 LKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRIT-----------DDEGNTPLHNAVRNKHENVVRMLVK  155 (215)
Q Consensus        87 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~a~~~~~~~~~~~ll~  155 (215)
                      ..|.||||+|+.+.+.++|++|++.|||+.++....+-.--+.+           -.-|..||.+|+-.++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            57999999999999999999999999998766553322111111           2357789999999999999999999


Q ss_pred             cCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCC--ccccCccCccHHHHHHHhCC
Q 037245          156 KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDS--LDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +|+++ +.+|..|+|.||..+.....++-..++++| +.  ..+++++|.|||..|++-|.
T Consensus       262 ~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  262 HGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             cCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHHHHHHhhh
Confidence            99998 899999999999999998999999999999 77  88899999999999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1.2e-20  Score=132.17  Aligned_cols=121  Identities=27%  Similarity=0.305  Sum_probs=64.4

Q ss_pred             HHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 037245           75 LRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV  154 (215)
Q Consensus        75 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  154 (215)
                      ++....+++.-|..|.+|||+|++.|+..+++.|+++|+.+            |..+....||||+|+.+|+.++++.|+
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv------------n~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV------------NSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc------------ccccCCCCcchhhhhhcccHHHHHHHH
Confidence            33444445555555555555555555555555555555442            234444455555555555555555555


Q ss_pred             HcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHH
Q 037245          155 KKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA  209 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A  209 (215)
                      +..++. +..+..|.||||+||.-|+-.+++-|+..| +.+++-++.|.|||..|
T Consensus        88 ~~kadv-navnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   88 SRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhh
Confidence            555554 455555555555555555555555555555 55555555555555544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=2.8e-19  Score=108.91  Aligned_cols=89  Identities=27%  Similarity=0.390  Sum_probs=79.4

Q ss_pred             HHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 037245           93 LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL  172 (215)
Q Consensus        93 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  172 (215)
                      ||+|++.|+.+++++|++.+.++.            .    |.||||+|+..|+.+++++|++.|+++ +..+..|+|||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~------------~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L   63 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN------------L----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTAL   63 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT------------S----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC------------C----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHH
Confidence            799999999999999999886522            1    889999999999999999999999987 78889999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccC
Q 037245          173 AIAIDSSLTDIACFIIDQRPDSLDHRL  199 (215)
Q Consensus       173 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~  199 (215)
                      |+|+..++.+++++|+++| ++++.+|
T Consensus        64 ~~A~~~~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   64 HYAAENGNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             HHHHHTTHHHHHHHHHHTT-T-TTSS-
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence            9999999999999999999 9888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=1.9e-18  Score=111.87  Aligned_cols=122  Identities=30%  Similarity=0.459  Sum_probs=78.8

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD  131 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  131 (215)
                      +..|.||||+|+..++.+++++|+ ..+...+..+..|.+|+|.|+..++.+++++|+++++.+            +..+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~------------~~~~   70 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV------------NARD   70 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc------------cccC
Confidence            455667777777777777777766 334444556666677777777777777777777666432            2345


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHH
Q 037245          132 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFI  187 (215)
Q Consensus       132 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  187 (215)
                      ..+.+|+|.|+..++.+++++|++.+... +..+..+.||++.|...++.+++++|
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            56667777777777777777777666443 44556666777777777766666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=2e-19  Score=135.13  Aligned_cols=144  Identities=22%  Similarity=0.276  Sum_probs=127.8

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc---------------------
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD---------------------   79 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~---------------------   79 (215)
                      +.++||.++...+.++++++++.|+++ +..|..|+||||-|+..|+..++++|++.+.                     
T Consensus        73 glTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~  151 (527)
T KOG0505|consen   73 GLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEAT  151 (527)
T ss_pred             cchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcch
Confidence            445699999999999999999999999 9999999999999999999999999996321                     


Q ss_pred             -------------------------------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC
Q 037245           80 -------------------------------------SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE  122 (215)
Q Consensus        80 -------------------------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  122 (215)
                                                           ...+..+..|-|.||.|...|..++.++|++.|.++       
T Consensus       152 ~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-------  224 (527)
T KOG0505|consen  152 LDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV-------  224 (527)
T ss_pred             hHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc-------
Confidence                                                 113445556899999999999999999999999774       


Q ss_pred             ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc
Q 037245          123 PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS  178 (215)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  178 (215)
                           +..|.+||+|||.|+..+..+.++.|+++|+.. +.....|.||+.+|..-
T Consensus       225 -----~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~-d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  225 -----NIKDYDGWTPLHAAAHWGQEDACELLVEHGADM-DAKTKMGETPLDVADEE  274 (527)
T ss_pred             -----ccccccCCCcccHHHHhhhHhHHHHHHHhhccc-chhhhcCCCCccchhhh
Confidence                 478999999999999999999999999999997 78889999999988763

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=4e-19  Score=108.22  Aligned_cols=86  Identities=24%  Similarity=0.355  Sum_probs=77.9

Q ss_pred             HHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHH
Q 037245           25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAI  104 (215)
Q Consensus        25 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  104 (215)
                      ||.|++.|+.+++++|++.+.++ +.    |.||||+|+..|+.+++++|+ +.+.+++.++.+|.||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLL-ENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHH-HTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHH-HhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            78999999999999999999887 33    889999999999999999999 5677889999999999999999999999


Q ss_pred             HHHHHhhccccc
Q 037245          105 VSTILNYVPAIT  116 (215)
Q Consensus       105 ~~~Ll~~~~~~~  116 (215)
                      +++|+++|+++.
T Consensus        75 ~~~Ll~~g~~~~   86 (89)
T PF12796_consen   75 VKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHTTT-TT
T ss_pred             HHHHHHcCCCCC
Confidence            999999998754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=6.3e-18  Score=109.37  Aligned_cols=116  Identities=28%  Similarity=0.437  Sum_probs=105.6

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc
Q 037245           85 HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI  164 (215)
Q Consensus        85 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  164 (215)
                      ++..|.||||.|+..++.+++++|+++++..            +..+..|.+|+|.|+..++.+++++|+..++.. +..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~   69 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NAR   69 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccc
Confidence            4578999999999999999999999998663            357889999999999999999999999999765 667


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          165 NKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       165 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +..+.||+|.|+..++.+++++|++++ .+++..+..|.||+++|...++
T Consensus        70 ~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~  118 (126)
T cd00204          70 DKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGH  118 (126)
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCC
Confidence            888999999999999999999999999 8899999999999999988764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=1.2e-19  Score=146.51  Aligned_cols=188  Identities=18%  Similarity=0.225  Sum_probs=140.4

Q ss_pred             CCCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcccccc-ccCCCC
Q 037245           11 PTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR-KHNLKG   89 (215)
Q Consensus        11 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~g   89 (215)
                      ..++........++|-.||..|+.+.++.|+.+|+++ ..+|+.|.+||..|+..|+...|+.|+.. .+.++ ..|+.+
T Consensus       747 ~~id~~Te~n~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtk  824 (2131)
T KOG4369|consen  747 TVIDPLTEPNIKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTK  824 (2131)
T ss_pred             eeeccccCccccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhccccc
Confidence            3455556666777899999999999999999999999 99999999999999999999999999954 44444 468899


Q ss_pred             CCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC---------
Q 037245           90 ETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP---------  160 (215)
Q Consensus        90 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---------  160 (215)
                      .|+|-+||..|+.+++++|+..|++-.            .++....|||.+|...|.++++..|+.+|..+         
T Consensus       825 dt~lSlacsggr~~vvelLl~~ganke------------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklg  892 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKE------------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLG  892 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhcccc------------ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccC
Confidence            999999999999999999999997743            34555666666666666666666666666543         


Q ss_pred             --------------------------ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          161 --------------------------LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       161 --------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                                                ......+-+|+|.+|+..|+.+++.+|+.+. +++.++-..|.|||.-++.-|
T Consensus       893 isPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~AsgG  970 (2131)
T KOG4369|consen  893 ISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMASGG  970 (2131)
T ss_pred             cchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhcCC
Confidence                                      2222333345555555666666666666666 666666667777776655443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=3e-17  Score=129.18  Aligned_cols=157  Identities=22%  Similarity=0.261  Sum_probs=133.0

Q ss_pred             hccHHHHHHHHc---CChHHHHHHHhcccCcccc----cCCCCchHHHHHHHcCCcchHHHHHHhccccccc--------
Q 037245           20 TMDHELLNVLRR---GDEHQIRPIAGRMQNIFST----MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK--------   84 (215)
Q Consensus        20 ~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~--------   84 (215)
                      -+.+.||.|..+   ++-++++.|++..+.+.+.    ....|.||||.|+.+.+.++|++|++ .+++++.        
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~  220 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFC  220 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccC
Confidence            345679999883   3448899999987765443    34689999999999999999999995 4555432        


Q ss_pred             -c--------------CCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHH
Q 037245           85 -H--------------NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV  149 (215)
Q Consensus        85 -~--------------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  149 (215)
                       .              -..|..||-.|+--++.+++++|+++|+++            +.+|..|+|.||..+.+-..++
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~------------~aqDS~GNTVLH~lVi~~~~~M  288 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP------------NAQDSNGNTVLHMLVIHFVTEM  288 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC------------CccccCCChHHHHHHHHHHHHH
Confidence             1              124789999999999999999999999884            4799999999999999989999


Q ss_pred             HHHHHHcCCC--CccccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 037245          150 VRMLVKKDRI--PLGYINKAEQTPLAIAIDSSLTDIACFIIDQ  190 (215)
Q Consensus       150 ~~~ll~~~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  190 (215)
                      ..+++++|+.  . ..+|..|-|||.+|++.|..++.+.++++
T Consensus       289 y~~~L~~ga~~l~-~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  289 YDLALELGANALE-HVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHhcCCCccc-cccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999998  5 57899999999999999999999999998

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=2.2e-16  Score=91.93  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             HHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 037245           93 LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL  172 (215)
Q Consensus        93 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  172 (215)
                      +.+++++|..+-|+-.+..|.+++            . -..|++|||+|+-.|+.+++++|+..|+++ +.+|.+|-|||
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn------------~-~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPL   71 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVN------------E-IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPL   71 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHH------------H-HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHH
Confidence            567889999999999888875533            2 237999999999999999999999999998 78999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHH
Q 037245          173 AIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA  209 (215)
Q Consensus       173 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A  209 (215)
                      ..|+..|+.++|++|+++| ++..++..+|.+.+..+
T Consensus        72 LsAvwEGH~~cVklLL~~G-Adrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   72 LSAVWEGHRDCVKLLLQNG-ADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHhhHHHHHHHHHcC-cccceeCCCchhHHhhc
Confidence            9999999999999999999 99999999999988755

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.67  E-value=3.3e-15  Score=106.58  Aligned_cols=130  Identities=25%  Similarity=0.380  Sum_probs=116.9

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC-----HHHHHHHHhhcc--cccCCCCC
Q 037245           49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD-----PAIVSTILNYVP--AITNGTES  121 (215)
Q Consensus        49 ~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~--~~~~~~~~  121 (215)
                      ...+..+.++++.++..+...++.+++ ..+.+++.++..|.||||+|+..++     .++++.|++.|+  +.      
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~------  139 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLL-ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV------  139 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHH-HcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC------
Confidence            445667899999999999999998888 5566669999999999999999999     999999999998  33      


Q ss_pred             CccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          122 EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                           .+..+..|+||||+|+..|+.++++.+++.++.. +..+..|.|+++.|+..++.++++.+++.+
T Consensus       140 -----~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 -----NNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -----ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                 2367999999999999999999999999999997 678999999999999999999999999864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.66  E-value=8.9e-16  Score=89.41  Aligned_cols=89  Identities=17%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      .+.+++++|..+-++..+..|-++ +..- .|++|||+|+-.|+.+++.+|+ ..++.++.+|..|-|||..|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~~~-ggR~plhyAAD~GQl~ilefli-~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NEIY-GGRTPLHYAADYGQLSILEFLI-SIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HHHh-CCcccchHhhhcchHHHHHHHH-HhccccCCccccCCcHHHHHHHHhhHH
Confidence            478999999999999999999777 5433 8999999999999999999999 778899999999999999999999999


Q ss_pred             HHHHHHhhcccc
Q 037245          104 IVSTILNYVPAI  115 (215)
Q Consensus       104 ~~~~Ll~~~~~~  115 (215)
                      +|++|+++|++-
T Consensus        82 cVklLL~~GAdr   93 (117)
T KOG4214|consen   82 CVKLLLQNGADR   93 (117)
T ss_pred             HHHHHHHcCccc
Confidence            999999999883

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=2.5e-16  Score=118.66  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=104.5

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      .|..|+..|.+++|+..+.+..++ ...+..|-|+||.|++.|+.+||++|+ ..+++++..|.+|+||||+|+..++..
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi-~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLI-EFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHH-hcCCcccCccCCCCchhhhhhhcCchH
Confidence            377899999999999999999998 889999999999999999999999999 788999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHH--HhcCCHHHHHHHHHc
Q 037245          104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA--VRNKHENVVRMLVKK  156 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~ll~~  156 (215)
                      +++.|++.|+-+.+           ..-.++.|+...+  ...|..+|.+||...
T Consensus       631 ~ckqLVe~GaavfA-----------sTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAVFA-----------STLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceEEe-----------eecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            99999999987654           3344566766554  456778899998764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=1.4e-14  Score=103.33  Aligned_cols=121  Identities=27%  Similarity=0.346  Sum_probs=109.9

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC-----HHHHHHHHH
Q 037245           81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-----ENVVRMLVK  155 (215)
Q Consensus        81 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~  155 (215)
                      .....+..+.++++.++..+..+++.+++..++++            +..+..|.||+|+|+..++     .++++.|++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~  132 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV------------NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE  132 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc------------ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH
Confidence            34455667899999999999999999999999885            3789999999999999999     999999999


Q ss_pred             cCC--CCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          156 KDR--IPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 ~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .|+  ......+..|.||||+|+..|+.++++.|++.| ++++.++..|.|+++.|+..++
T Consensus       133 ~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~  192 (235)
T COG0666         133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGR  192 (235)
T ss_pred             cCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccch
Confidence            999  555777999999999999999999999999999 9999999999999999988764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.62  E-value=4.3e-16  Score=126.48  Aligned_cols=179  Identities=16%  Similarity=0.122  Sum_probs=104.1

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      ||+.|...|+.+..+.|++.|.+++-....+.+|+|-+|+..|..+.+..|| ...+.+..+...|.|||.-++..|..+
T Consensus       895 PLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLL-a~~anvehRaktgltplme~AsgGyvd  973 (2131)
T KOG4369|consen  895 PLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLL-AAQANVEHRAKTGLTPLMEMASGGYVD  973 (2131)
T ss_pred             hhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHH-HHhhhhhhhcccCCcccchhhcCCccc
Confidence            4555555555555555555555552222334445555555555555555555 334444555555555555555555555


Q ss_pred             HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHH
Q 037245          104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDI  183 (215)
Q Consensus       104 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  183 (215)
                      +-.+|+..|++.+..          ..-....|+|..++..|+.+.++.|+...+.. ..++.+|.|+|.+|+..|....
T Consensus       974 vg~~li~~gad~nas----------Pvp~T~dtalti~a~kGh~kfv~~lln~~atv-~v~NkkG~T~Lwla~~Gg~lss 1042 (2131)
T KOG4369|consen  974 VGNLLIAAGADTNAS----------PVPNTWDTALTIPANKGHTKFVPKLLNGDATV-RVPNKKGCTVLWLASAGGALSS 1042 (2131)
T ss_pred             cchhhhhcccccccC----------CCCCcCCccceeecCCCchhhhHHhhCCccce-ecccCCCCcccchhccCCcccc
Confidence            555555555554322          11222335556666666666666666655554 5667777777777777777777


Q ss_pred             HHHHHHhCCCCccccCccCccHHHHHHHhCCC
Q 037245          184 ACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY  215 (215)
Q Consensus       184 ~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~  215 (215)
                      +..|++++ ++.+..|....+++.-|.+.|.+
T Consensus      1043 ~~il~~~~-ad~d~qdnr~~S~~maafRKgh~ 1073 (2131)
T KOG4369|consen 1043 CPILVSSV-ADADQQDNRTNSRTMAAFRKGHF 1073 (2131)
T ss_pred             chHHhhcc-cChhhhhcccccccHHHHHhchh
Confidence            77777777 77777777777777777776653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.62  E-value=7.2e-16  Score=84.74  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             HHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHH
Q 037245          153 LVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA  209 (215)
Q Consensus       153 ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A  209 (215)
                      |++++....+..|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            466674445889999999999999999999999999888 99999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.58  E-value=1.6e-14  Score=117.34  Aligned_cols=104  Identities=23%  Similarity=0.260  Sum_probs=94.3

Q ss_pred             HHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcH
Q 037245           92 PLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP  171 (215)
Q Consensus        92 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~  171 (215)
                      .|+.|+..|+.+.++.|+++|+++            +..|..|+||||+|+..|+.+++++|+++|+++ +..+..|.||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi------------n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~Tp  151 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP------------NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTP  151 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------------CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            488999999999999999999874            467889999999999999999999999999997 7899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHh-------CCCCccccCccCccHHHHH
Q 037245          172 LAIAIDSSLTDIACFIIDQ-------RPDSLDHRLPEELTLLHSA  209 (215)
Q Consensus       172 l~~a~~~~~~~~~~~Ll~~-------g~~~~~~~~~~g~t~l~~A  209 (215)
                      ||+|+..++.+++++|+++       + ++.+..+..|.+|+..+
T Consensus       152 Lh~A~~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        152 LELAEENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchh
Confidence            9999999999999999999       6 77888888888776654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.56  E-value=2.9e-14  Score=115.90  Aligned_cols=87  Identities=22%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      ..|+.|+..|+.+.++.|++.|+++ +..|..|.||||+|+..|+.+++++|+ ..+++++.+|..|.||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL-~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLL-EFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            4588999999999999999999999 899999999999999999999999999 56888999999999999999999999


Q ss_pred             HHHHHHHhh
Q 037245          103 AIVSTILNY  111 (215)
Q Consensus       103 ~~~~~Ll~~  111 (215)
                      +++++|+++
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=1.3e-14  Score=79.34  Aligned_cols=54  Identities=35%  Similarity=0.520  Sum_probs=33.8

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL  109 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  109 (215)
                      |.||||+|+..|+.+++++|++. +.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56777777777777777777743 5666667777777777777777777777764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=7.3e-14  Score=98.22  Aligned_cols=117  Identities=20%  Similarity=0.260  Sum_probs=68.2

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcccccc-ccCCCCCCHHHHHHHhCCH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR-KHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~  102 (215)
                      +|..++..|+.+-...|++...++ +..|..|+|+|..|+..|+.++++.|++ .++++| .++..++||||.|+.+|+.
T Consensus        15 ~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   15 PLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             HHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHHHHcCCc
Confidence            466666666666666666655555 5566666666666666666666666663 333333 3444566666666666666


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV  154 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  154 (215)
                      ++.++|++.|+...            ..|.-|+|+-..|+.-|+-+++..+-
T Consensus        93 dvcrllldaGa~~~------------~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   93 DVCRLLLDAGARMY------------LVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hHHHHHHhccCccc------------cccchhhhHHHHHHHhcchHHHHHHh
Confidence            66666666665422            34555666666666666666665443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=3e-14  Score=77.85  Aligned_cols=54  Identities=30%  Similarity=0.455  Sum_probs=43.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHH
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII  188 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  188 (215)
                      |+||||+|+..|+.+++++|+++|.++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            679999999999999999999998886 778999999999999999999999886

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=5.4e-14  Score=106.31  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             hHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCc
Q 037245           57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNT  136 (215)
Q Consensus        57 t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (215)
                      -.|.-|+..|-+++|+.++ ..-.++...+..|.|+||-|+-.|+.+||++|++.|++            +|..|.+|||
T Consensus       552 aLLLDaaLeGEldlVq~~i-~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan------------VNa~DSdGWT  618 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRII-YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN------------VNAADSDGWT  618 (752)
T ss_pred             HHHHhhhhcchHHHHHHHH-HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc------------ccCccCCCCc
Confidence            3456688899999999888 44556777888999999999999999999999999988            4478999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHH--HHcCCHHHHHHHH
Q 037245          137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA--IDSSLTDIACFII  188 (215)
Q Consensus       137 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~Ll  188 (215)
                      |||.|+..+++.+++.|++.|+.+....-.++.|+..-+  -+-|..++.++|-
T Consensus       619 PLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999999999999999999998766677888888766  3456778888875

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.3e-14  Score=78.73  Aligned_cols=55  Identities=29%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             HHhcc-cCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           40 IAGRM-QNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        40 ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      |++++ .++ +..|..|.||||+|+..|+.+++++|+ ..+.+++.+|..|+||||+|
T Consensus         1 LL~~~~~~~-n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADV-NAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--T-T---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCC-cCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            46677 566 889999999999999999999999999 88999999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=6.2e-13  Score=93.61  Aligned_cols=95  Identities=22%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             CcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHH
Q 037245           15 QELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLH   94 (215)
Q Consensus        15 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~   94 (215)
                      ..++.+++. |..|+..|+.++++.+++.|++++..+...++||||+|+.+|+.++.+.|+ ..++.....+.-|+|+-.
T Consensus        40 ~~D~sGMs~-LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll-daGa~~~~vNsvgrTAaq  117 (396)
T KOG1710|consen   40 QRDPSGMSV-LAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL-DAGARMYLVNSVGRTAAQ  117 (396)
T ss_pred             ccCCCcccH-HHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHH-hccCccccccchhhhHHH
Confidence            344455544 555666666666666666666664455566666666666666666666666 344455555566666666


Q ss_pred             HHHHhCCHHHHHHHHhh
Q 037245           95 IAARVGDPAIVSTILNY  111 (215)
Q Consensus        95 ~a~~~~~~~~~~~Ll~~  111 (215)
                      .|+.-|+.++|..+-.+
T Consensus       118 mAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  118 MAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHhcchHHHHHHhcc
Confidence            66666666666665433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.14  E-value=8.3e-11  Score=88.28  Aligned_cols=90  Identities=19%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      -.+++|++.|+...++-+.=.+.++ +..|.+.+|+||+|+..|+.+++++|++....+++.+|.+|+|||.-|...++.
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            3588999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 037245          103 AIVSTILNYVP  113 (215)
Q Consensus       103 ~~~~~Ll~~~~  113 (215)
                      +++++|-+...
T Consensus       587 ~v~k~L~~~~~  597 (622)
T KOG0506|consen  587 EVVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.03  E-value=1.9e-10  Score=91.91  Aligned_cols=83  Identities=25%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccccc-CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccH
Q 037245          127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINK-AEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL  205 (215)
Q Consensus       127 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~  205 (215)
                      .+..|..|+++||.++..+..++++||+++|.+. ..+|. .|+||||-|+.+|+++++-.|+++| ..+-++|.+|..|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCCCH
Confidence            4478999999999999999999999999999987 55654 6999999999999999999999999 9999999999999


Q ss_pred             HHHHHH
Q 037245          206 LHSAVM  211 (215)
Q Consensus       206 l~~A~~  211 (215)
                      |+.-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            998766

>PF13606 Ank_3: Ankyrin repeat

Probab=99.02  E-value=5.7e-10  Score=52.50  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 037245          167 AEQTPLAIAIDSSLTDIACFIIDQRPDSLD  196 (215)
Q Consensus       167 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  196 (215)
                      +|+||||+|++.|+.+++++|+++| +++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCC
Confidence            4677888888888888888888877 6665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.98  E-value=1.3e-09  Score=52.81  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=26.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q 037245          167 AEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL  199 (215)
Q Consensus       167 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  199 (215)
                      +|+||||+|+..++.+++++|+++| ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCC
Confidence            4778888888888888888888888 8887765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.97  E-value=3.4e-09  Score=81.70  Aligned_cols=121  Identities=24%  Similarity=0.314  Sum_probs=93.5

Q ss_pred             HHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHH
Q 037245           59 LHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL  138 (215)
Q Consensus        59 L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (215)
                      +..|+..+++--++..- ..+..+..++.+..+.||+|+..|+.++|++++++|+.          .++++.+..|.|+|
T Consensus       870 il~av~~~D~~klqE~h-~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----------elld~~de~get~l  938 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH-LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----------ELLDMADETGETAL  938 (1004)
T ss_pred             HHHHHHhccHHHHHHHH-hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----------HHHHHHhhhhhHHH
Confidence            34444445544444443 34455667888888999999999999999999988865          34667888899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          139 HNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       139 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      |.|+-.++..+.++|++.|+.. ...|..|.||-.-|-+.|+.+++.+|-.+.
T Consensus       939 hkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  939 HKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9998888999999999988886 567888999999898889999988887654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.97  E-value=5.3e-10  Score=89.45  Aligned_cols=103  Identities=24%  Similarity=0.305  Sum_probs=82.4

Q ss_pred             HHHcCChHHHHHHHh-cccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCC-CCCCHHHHHHHhCCHHHH
Q 037245           28 VLRRGDEHQIRPIAG-RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL-KGETPLHIAARVGDPAIV  105 (215)
Q Consensus        28 a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~  105 (215)
                      +...+..+-++-++. ++.+..+..|..|+|+||.|+..+..++++||+ +++.++..+|. .|+||||-|+.+|+++++
T Consensus        24 ~~tKs~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~idca  102 (1267)
T KOG0783|consen   24 SKTKSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNIDCA  102 (1267)
T ss_pred             hhhcCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHH-hcCceeeeccccccchHhhHhhhhchHHHH
Confidence            333455544555544 455555788999999999999999999999999 45888888875 699999999999999999


Q ss_pred             HHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHh
Q 037245          106 STILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR  143 (215)
Q Consensus       106 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  143 (215)
                      -.|+++|..+.            ..|++|..||...++
T Consensus       103 ~lLL~~g~SL~------------i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  103 SLLLSKGRSLR------------IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHhcCCceE------------EecccCCCHHHHHhh
Confidence            99999997744            689999999988776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.95  E-value=4.9e-09  Score=80.84  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=105.1

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc-ccccccCCCCCCHHHHHHHhCCH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD-SLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~-~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      -+..|+..+++-.++.....|.++ ..++.+..+.||+|+..|+-++|+++|+..+ ..++..+..|.|+||.|+-.++-
T Consensus       869 eil~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            367788888887778888888888 7889999999999999999999999997654 44667788999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  156 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  156 (215)
                      .+..+|++.|+.+.            -.|..|.||-..|-+.++.+...||-.+
T Consensus       948 ~vc~~lvdagasl~------------ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLR------------KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhhe------------ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999998854            4788999999999999999999988654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.6e-09  Score=50.99  Aligned_cols=28  Identities=39%  Similarity=0.604  Sum_probs=23.2

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhhcccc
Q 037245           88 KGETPLHIAARVGDPAIVSTILNYVPAI  115 (215)
Q Consensus        88 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  115 (215)
                      +|+||||+|++.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788888888888888888888888764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=9.9e-09  Score=77.79  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=80.6

Q ss_pred             ccCCCCCCH------HHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 037245           84 KHNLKGETP------LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD  157 (215)
Q Consensus        84 ~~~~~g~t~------l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  157 (215)
                      .+|.+|.+.      ||.+++.|+.+..--|+..|++.+.           +-...|.||||.|++.|+...++.|+=+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~-----------~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG  190 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANF-----------FHPEKGNTPLHVAAKAGQILQAELLAVYG  190 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCC-----------CCcccCCchhHHHHhccchhhhhHHhhcc
Confidence            355555543      8889999999999999999998664           23457899999999999999999999999


Q ss_pred             CCCccccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 037245          158 RIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ  190 (215)
Q Consensus       158 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  190 (215)
                      +++ ...|.+|.||+.+|...|+-++.+.|++.
T Consensus       191 AD~-~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  191 ADP-GAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCC-CCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            998 78999999999999999999888877653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.87  E-value=1.8e-08  Score=76.39  Aligned_cols=93  Identities=15%  Similarity=0.155  Sum_probs=82.1

Q ss_pred             hhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHH
Q 037245           18 PATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAA   97 (215)
Q Consensus        18 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~   97 (215)
                      ....+.-||..++.|+.++.--|+..|++.+...-..|.||||+|++.|+..=+.+|+ -+++++...|.+|.||+.+|-
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCCCCCcHHHHHH
Confidence            3455667999999999999999999999994444578999999999999999998888 889999999999999999999


Q ss_pred             HhCCHHHHHHHHhh
Q 037245           98 RVGDPAIVSTILNY  111 (215)
Q Consensus        98 ~~~~~~~~~~Ll~~  111 (215)
                      ..|+-++.+-|++.
T Consensus       209 ~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  209 QGGHHELAERLVEI  222 (669)
T ss_pred             hcCchHHHHHHHHH
Confidence            99999988877764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.81  E-value=7.5e-09  Score=78.04  Aligned_cols=94  Identities=18%  Similarity=0.190  Sum_probs=82.6

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc
Q 037245           86 NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN  165 (215)
Q Consensus        86 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  165 (215)
                      +.++..++.+|+..|+...++-+.-.|.++            +..|.+.+|+||.|+..|+++++++|++.-..+.+.+|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~------------~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD  570 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL------------ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD  570 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc------------cccccccchhheeecccCceeHHHHHHHHHcCCCChhh
Confidence            345677899999999999999888788774            46899999999999999999999999998555557899


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          166 KAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       166 ~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      ++|+|||.-|...++.+++++|-+.-
T Consensus       571 Rw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  571 RWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            99999999999999999999998765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.78  E-value=2.2e-08  Score=77.28  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCc---ccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNI---FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      -|.-|+...++..+-.|+.+|...   ....+.+|+|+||.||..|+..+.++|+ -++.++..+|.+|.|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhcc
Confidence            478899999999999999998542   1234677899999999999999999999 899999999999999999999999


Q ss_pred             CHHHHHHHHhhcccc
Q 037245          101 DPAIVSTILNYVPAI  115 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~  115 (215)
                      .-+++..|+++|+..
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999999663

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.76  E-value=4.9e-08  Score=78.66  Aligned_cols=125  Identities=20%  Similarity=0.163  Sum_probs=71.7

Q ss_pred             HHHHHHcCChHHHHHHHhccc----CcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           25 LLNVLRRGDEHQIRPIAGRMQ----NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        25 l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      ...|+..|+...++.+++...    ++ |..|.-|+++|+.|+.+.+.++..+|++. +...       ..+|.+|+..|
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lni-nc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~aI~~~   99 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNI-NCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccch-hccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHHHHHH
Confidence            567777788777777776532    34 56677777777777777777777777732 2111       34577777777


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  160 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  160 (215)
                      ..+.++.++.+.........  ...........+.||+.+|+..++.++++.|+.+|+..
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~--~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLER--SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHhcccccchhcc--ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            77777777776433111000  00000112223445555555555555555555555543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.72  E-value=7e-08  Score=74.61  Aligned_cols=90  Identities=16%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             HHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 037245           93 LHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL  172 (215)
Q Consensus        93 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  172 (215)
                      |.-|....+...+-+|+.+|........        ..+.+|+|+||+|++.|++.+.+.|+-+|++. ..+|..|+|+|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t--------~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l  698 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNET--------CGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhcc--------ccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhh
Confidence            5557777788888899999865432211        45678899999999999999999999999998 68999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhC
Q 037245          173 AIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       173 ~~a~~~~~~~~~~~Ll~~g  191 (215)
                      .+|.+.|.-+++..|+++|
T Consensus       699 ~yar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYG  717 (749)
T ss_pred             hhHhhcccHHHHHHHHHcC
Confidence            9999999999999999999

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=5.8e-08  Score=46.90  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=28.5

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc
Q 037245          133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN  165 (215)
Q Consensus       133 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  165 (215)
                      +|+||||+|+..++.+++++|+++|+++ +.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5899999999999999999999999987 4443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=8.9e-08  Score=73.33  Aligned_cols=88  Identities=23%  Similarity=0.304  Sum_probs=73.6

Q ss_pred             HHHHHHHHcCChHHHHHHHhc--ccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           23 HELLNVLRRGDEHQIRPIAGR--MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      .++|.++...+.+.+...+..  ...+ ...|..|.||||.|+..|+...++.|+ ..++++..++..|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~i-d~~D~~g~TpLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVI-DRRDPPGRTPLHLAVRLGHVEAARILL-SAGADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhcee-ccccCCCCccHHHHHHhcCHHHHHHHH-hcCCCccccccccccHHHHHHHcC
Confidence            358999998888777664433  2344 788999999999999999999999999 667788899999999999999999


Q ss_pred             CHHHHHHHHhhc
Q 037245          101 DPAIVSTILNYV  112 (215)
Q Consensus       101 ~~~~~~~Ll~~~  112 (215)
                      +.+++..++.+-
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            999887777653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=1.8e-07  Score=71.72  Aligned_cols=90  Identities=26%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             CHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCc
Q 037245           91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT  170 (215)
Q Consensus        91 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  170 (215)
                      .|+|.+......+-....+......          -++..|..|+||||+|+..|+...++.|+..|++. ..+|..|++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~----------~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs   90 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSL----------VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWS   90 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhc----------eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-ccccccccc
Confidence            4588888877766655443332221          14578899999999999999999999999999987 689999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhC
Q 037245          171 PLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       171 ~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      |||-|+..|+..++..++.+-
T Consensus        91 ~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   91 PLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHcCCHHHHHHHHHHh
Confidence            999999999998888777654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.55  E-value=4.6e-07  Score=73.28  Aligned_cols=133  Identities=15%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHhcc---ccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccccc
Q 037245           54 RGNTVLHMAIRFRNHKVIPEILRQQD---SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRIT  130 (215)
Q Consensus        54 ~g~t~L~~A~~~~~~~~~~~ll~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  130 (215)
                      .+.--...|+..|+...|+..++...   -.++..|.-|+++|++|..+.+.++.++|+++....       .++.+-..
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            34445678999999999999987543   346778889999999999999999999999986332       01111111


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccc
Q 037245          131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDH  197 (215)
Q Consensus       131 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  197 (215)
                      .. |.-++....-... .....+-..+... ...-.-+.||+++|+..++++|+++|+++| +.+..
T Consensus        97 ~~-~~v~~VE~ll~~~-~~~~~~~~~~d~~-~~~ft~ditPliLAAh~NnyEil~~Ll~kg-~~i~~  159 (822)
T KOG3609|consen   97 AV-GSVPLVELLLVHF-VDAPYLERSGDAN-SPHFTPDITPLMLAAHLNNFEILQCLLTRG-HCIPI  159 (822)
T ss_pred             HH-HHHHHHHHHHhcc-cccchhccccccC-cccCCCCccHHHHHHHhcchHHHHHHHHcC-CCCCC
Confidence            11 1111111110000 0000000011111 223345789999999999999999999999 55444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.44  E-value=2.2e-07  Score=76.47  Aligned_cols=77  Identities=25%  Similarity=0.304  Sum_probs=56.3

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHH
Q 037245          133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM  211 (215)
Q Consensus       133 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~  211 (215)
                      .|.++||.|+..+...+.++|++.|++. +..+..|++|+|.+...|+...+..|+++| ++.+..+.+|++|+++|..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhHHhh
Confidence            4567777777777777777777777774 677777777777777777777777777777 7777777777777777754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.34  E-value=1.9e-06  Score=63.70  Aligned_cols=65  Identities=18%  Similarity=0.318  Sum_probs=56.3

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCC
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE   90 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~   90 (215)
                      -|+.||+.|+.+.++.|++.|.++ |..|....+||.+|+..|+...|++|++ .|+.......+|.
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~  103 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGD  103 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcc
Confidence            499999999999999999999999 9999999999999999999999999994 5555544444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.31  E-value=1.1e-06  Score=72.53  Aligned_cols=127  Identities=17%  Similarity=0.063  Sum_probs=97.0

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhc-ccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      +.+.+|+++..+..-+++.+++- +... ...|..|.-.+|+ |..+.++...+++.-.+..++.+|..|+||||+|...
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            34559999999999999999886 4444 5667777778888 4456777776666567778899999999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  155 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  155 (215)
                      |+..++..|++.|++.....      +++.....|.|+-..|...|+..+.-+|-+
T Consensus       652 G~e~l~a~l~~lga~~~~~t------dps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVT------DPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             CHHHHHHHHHHhcccccccc------CCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999999887754322      234555678888888877777666666644

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.17  E-value=2.6e-06  Score=70.37  Aligned_cols=89  Identities=28%  Similarity=0.467  Sum_probs=78.8

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccccc
Q 037245           87 LKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINK  166 (215)
Q Consensus        87 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  166 (215)
                      ..|.|+||.|+..+..-+.++|+++|++            +|..+..|++|+|.+...|.......++++|+.+ +..+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~------------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~  720 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD------------VNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDP  720 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc------------chhhhccCCCcchhhhhhcccchhhhhccccccc-cccCc
Confidence            4579999999999999999999999988            4478999999999999999999999999999998 78999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHH
Q 037245          167 AEQTPLAIAIDSSLTDIACFII  188 (215)
Q Consensus       167 ~~~t~l~~a~~~~~~~~~~~Ll  188 (215)
                      .|.+|+.+|....+.+++-++.
T Consensus       721 ~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  721 DGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cCcchhhHHhhhccccHHHHHh
Confidence            9999999997776666664443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=9.7e-06  Score=60.14  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCcc
Q 037245          135 NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELT  204 (215)
Q Consensus       135 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t  204 (215)
                      .--|..||+.|+.+.+++|++.|.++ |.+|....+||.+|+-.|+.++|++|+++| +....-..+|..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~R  104 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGDR  104 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcch
Confidence            44578999999999999999988886 899999999999999999999999999999 776655555543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.10  E-value=4.1e-06  Score=69.37  Aligned_cols=126  Identities=19%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHh-hcccccCCCCCCcccccccc
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN-YVPAITNGTESEPESLLRIT  130 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~  130 (215)
                      ...|++.+|.++..+..-++..+++..+......|.+|...+|. |..+..+++-+++. .|..            ++++
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a------------i~i~  637 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA------------IDIR  637 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccc------------cccc
Confidence            44566677777666666666666643232333345555555666 33333444333332 2211            4466


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc-----cCCCcHHHHHHHcCCHHHHHHHHHh
Q 037245          131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN-----KAEQTPLAIAIDSSLTDIACFIIDQ  190 (215)
Q Consensus       131 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~t~l~~a~~~~~~~~~~~Ll~~  190 (215)
                      |..|+||||+|...|...++..|+..|+...-..|     -.|.|+-..|...|+..+.-+|-+.
T Consensus       638 D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  638 DRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            77777777777777777777777766554321111     2456666666666666666665544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.09  E-value=1.4e-05  Score=53.78  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=60.1

Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       126 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      .+|.+|..|||+++.|+..|+.+.+.||+.+|.......+..+.+++.+|-+.|..+.+..|.+.-
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            367899999999999999999999999999995545889999999999999999999999998875

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.07  E-value=1.1e-05  Score=54.12  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=60.7

Q ss_pred             cCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhccc
Q 037245           45 QNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA  114 (215)
Q Consensus        45 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  114 (215)
                      .++ +.+|..|+|+++.|+..|+.+.+.+|+....+.+...|..+.+.+.+|-+.|..+++..|.++..+
T Consensus         3 ~~i-n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNI-NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCc-cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            455 888999999999999999999999999766688889999999999999999999999999987533

>smart00248 ANK ankyrin repeats

Probab=97.39  E-value=0.00045  Score=31.22  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=16.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          168 EQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       168 ~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      +.||+++|+..++.++++.|++++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            456677777667777777777666

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.22  E-value=0.00072  Score=30.47  Aligned_cols=26  Identities=38%  Similarity=0.620  Sum_probs=19.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhhccc
Q 037245           89 GETPLHIAARVGDPAIVSTILNYVPA  114 (215)
Q Consensus        89 g~t~l~~a~~~~~~~~~~~Ll~~~~~  114 (215)
                      |.||+|+|+..++.++++.|++++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56777777777777777777776643

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.13  E-value=0.0015  Score=50.62  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAID  177 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~  177 (215)
                      ...++.|.+++.+.+....      +...+.---|+||+|+.+|.-+++.+||+.|+++ ..+|..|+||++++..
T Consensus       404 p~~ie~lken~lsgnf~~~------pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT------PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCccccccc------ccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCccccccc
Confidence            4567777777766433211      2233344568899999999999999999999887 6899999999988873

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.89  E-value=0.0016  Score=50.49  Aligned_cols=63  Identities=8%  Similarity=-0.063  Sum_probs=50.3

Q ss_pred             HHHHHHHHHcCCCCc-----cccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          147 ENVVRMLVKKDRIPL-----GYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       147 ~~~~~~ll~~~~~~~-----~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      ...+++|.+++....     ...+..-.|+||+|+..|..++|..|++.| +|+.++|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            567778877755431     112223468999999999999999999999 999999999999998775

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.88  E-value=0.026  Score=38.29  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             hHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Q 037245           57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL  109 (215)
Q Consensus        57 t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  109 (215)
                      +.+..|+..+.+++++..-+....    .-...++.+-.||+..+.++|+|+-
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~----~~~~~q~LFElAC~~qkydiV~WI~   96 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN----ERYLNQELFELACEEQKYDIVKWIG   96 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc----chhHHHHHHHHHHHHccccHHHHHh
Confidence            445555555555555444321110    0123344555566666666666663

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.64  E-value=0.028  Score=38.15  Aligned_cols=136  Identities=13%  Similarity=0.070  Sum_probs=93.6

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      -.|.-|++.+-..+++..-+...+.    -....+.+-.||+..+.++|+|+-+. -     .-.+-.+.+.+|....+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn-L-----~i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN-L-----HIYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc-c-----CCCCchhhhhhhhhccch
Confidence            3567788888888877765554322    34567888999999999999999532 1     122345668899999988


Q ss_pred             HHH----HHHHhhcccccCCCCCCccccccccCCCCC----cHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHH
Q 037245          103 AIV----STILNYVPAITNGTESEPESLLRITDDEGN----TPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI  174 (215)
Q Consensus       103 ~~~----~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  174 (215)
                      ++.    .+++++...              ..+.+..    .-|..|+..|-...+...+++|.+..       .++|..
T Consensus       118 sLyslGY~l~~~~~~~--------------~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~  176 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMS--------------EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQ  176 (192)
T ss_pred             hHHHHHHHHHHhhccc--------------ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHH
Confidence            873    233333211              1011111    23567899999999998999887651       289999


Q ss_pred             HHHcCCHHHHHHHHH
Q 037245          175 AIDSSLTDIACFIID  189 (215)
Q Consensus       175 a~~~~~~~~~~~Ll~  189 (215)
                      |+.+++-.++.+++.
T Consensus       177 Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  177 AVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHhhHHHHHHHhhc
Confidence            999999999988774

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.37  E-value=0.041  Score=38.70  Aligned_cols=118  Identities=15%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCC----CCCCHHHHHHH-
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL----KGETPLHIAAR-   98 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~----~g~t~l~~a~~-   98 (215)
                      .|-.|+...+.+-+.-++....+.        .+++.+|+..+..+++.+|+.+..  ...+|.    .+.--+-++.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhHHHHHhh
Confidence            366777777777776666655443        567777777777778888876433  112221    11112333333 


Q ss_pred             -hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 037245           99 -VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  159 (215)
Q Consensus        99 -~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  159 (215)
                       ..+..+++.++++|--..+...        ..-..|.|-|--|+.+++.+++.+|+++|+.
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F--------~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKF--------QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhh--------hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence             2344556666665522111000        1223455666666666666666666666553

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.63  E-value=0.067  Score=31.02  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=36.3

Q ss_pred             HHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhc
Q 037245           25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQ   78 (215)
Q Consensus        25 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~   78 (215)
                      +..|+..|+.++++.+++.+ .+    +   ..++..|+...+.+++++|++..
T Consensus        10 l~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            78899999999999888655 33    1   45788899998999999988654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.62  E-value=0.085  Score=37.16  Aligned_cols=95  Identities=7%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCCccc---c
Q 037245           90 ETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR--NKHENVVRMLVKKDRIPLGY---I  164 (215)
Q Consensus        90 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~---~  164 (215)
                      .+++-+|+..+..+++.+|+++-.- ..      +-....  ..+..-+.++.+  ..+..++++++++|-...+.   +
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~f-t~------~dv~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~  250 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNF-TK------QDVASM--EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQK  250 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcce-ec------chhhhc--CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhc
Confidence            4567778888889999999876311 00      000001  112224555544  34688999999998766443   3


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 037245          165 NKAEQTPLAIAIDSSLTDIACFIIDQRPDS  194 (215)
Q Consensus       165 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  194 (215)
                      -..|.|-|.-|.++++.+++.+|+++| +.
T Consensus       251 ~NSGdtMLDNA~Ky~~~emi~~Llk~G-A~  279 (284)
T PF06128_consen  251 VNSGDTMLDNAMKYKNSEMIAFLLKYG-AI  279 (284)
T ss_pred             cCCcchHHHhHHhcCcHHHHHHHHHcC-cc
Confidence            357999999999999999999999999 53

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.57  E-value=0.11  Score=30.17  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=39.1

Q ss_pred             chHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhh
Q 037245           56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY  111 (215)
Q Consensus        56 ~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  111 (215)
                      ...+..|+.+|+.++++.+++....  +      ...+..|+...+-++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4678999999999999999853321  1      3358999999999999999976

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-04
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		3e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		5e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		9e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		9e-04

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A R   H  I E+L +  + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AAR G   IV  +L     +               D +G TPLH A R
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +TP  +AID+   DIA
Sbjct: 111 EGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDNGNEDIA 150

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A R   H  I E+L +  + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AAR G   IV  +L     +               D +G TPLH A R
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +TP  +AI     DIA
Sbjct: 111 EGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDIA 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G+T LH+A R   H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARV-GHLEIVEVLLKNGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AA+ G   IV  +L Y      G +   +  +      G+TPLH A  
Sbjct: 75  ALDFSGSTPLHLAAKRGHLEIVEVLLKY------GADVNADDTI------GSTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 TGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A R   H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AAR G   IV  +L     +               D +G TPLH A R
Sbjct: 75  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 EGHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +T    G T LH+A     H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAAS-NGHLEIVEVLLKNGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +L G TPLH+AA  G   IV  +L +   +               D++G+TPLH A +
Sbjct: 75  ASDLTGITPLHLAAATGHLEIVEVLLKHGADV------------NAYDNDGHTPLHLAAK 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 YGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A  F  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHF-GHLEIVEVLLKNGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AAR G   IV  +L       NG +      +  +D  G TPLH A +
Sbjct: 75  AKDSLGVTPLHLAARRGHLEIVEVLL------KNGAD------VNASDSHGFTPLHLAAK 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+ K+   +   +K  +T   I+ID+   D+A
Sbjct: 123 RGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +T    G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             ++ G TPLH+AA +G   IV  +L +   +               D  G+TPLH A  
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 MGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +T    G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             ++ G TPLH+AA +G   IV  +L +   +               D  G+TPLH A  
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 MGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A   + H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLA-AIKGHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G+TPLH+AA  G   IV  +L       NG +      +  TD  G TPLH A  
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLK------NGAD------VNATDTYGFTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 AGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLA-AYSGHLEIVEVLLKHGADVD 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             ++ G TPLH+AA  G   IV  +L       NG +      +   D +G TPLH A +
Sbjct: 75  ASDVFGYTPLHLAAYWGHLEIVEVLLK------NGAD------VNAMDSDGMTPLHLAAK 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             +  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 WGYLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ + M   G T LH+A + R H  I E+L +  + + 
Sbjct: 17  KLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
             ++ G TPLH+AA VG   IV  +L Y  A  N  +   ++   I+ D GN  L
Sbjct: 75  ASDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ + M   G T LH+A + R H  I E+L +  + + 
Sbjct: 17  KLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
             ++ G TPLH+AA VG   IV  +L Y  A  N  +   ++   I+ D GN  L
Sbjct: 75  ARDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLA-AYWGHLEIVEVLLKNGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
            ++  G TPLH+AA  G   IV  +L       NG +   +      DD G TPLH A  
Sbjct: 75  AYDTLGSTPLHLAAHFGHLEIVEVLL------KNGADVNAK------DDNGITPLHLAAN 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+I++   D+A
Sbjct: 123 RGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGNEDLA 162

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +T    G+T LH+A +   H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAK-TGHLEIVEVLLKYGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AA  G   IV  +L +   +               D EG TPLH A  
Sbjct: 75  AWDNYGATPLHLAADNGHLEIVEVLLKHGADV------------NAKDYEGFTPLHLAAY 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
           + H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 DGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +    +G+T LH+A  +  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLA-AWIGHPEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AA  G   IV  +L Y   +               D  G TPLH A  
Sbjct: 75  ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------AQDAYGLTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 RGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ + +   G T LH+A     H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLA-AVSGHLEIVEVLLKHGADVD 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             ++ G TPLH+AA  G   IV  +L Y   +               D  G+TPLH A  
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVLLKYGADV------------NAFDMTGSTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 EGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ + M   G T LH+A + R H  I E+L +  + + 
Sbjct: 17  KLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
             +  G TPLH+AA VG   IV  +L Y  A  N  +   ++   I+ D GN  L
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 25  LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
           L+     G++ +++ +     ++ ++ S  G T LH A +   HK I ++L  + + +  
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHYAAK-EGHKEIVKLLISKGADVNA 65
Query: 85  HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
            +  G TPLH AA+ G   IV  +      I+ G +      +   D +G TPLH A + 
Sbjct: 66  KDSDGRTPLHYAAKEGHKEIVKLL------ISKGAD------VNAKDSDGRTPLHYAAKE 113
Query: 145 KHENVVRMLVKK 156
            H+ +V++L+ K
Sbjct: 114 GHKEIVKLLISK 125

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 25  LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
           L+     G++ +++ +     ++ ++ S  G T LH+A     HK + ++L  Q +    
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSD-GKTPLHLAAE-NGHKEVVKLLLSQGADPNA 65
Query: 85  HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
            +  G+TPLH+AA  G   +V  +L+          ++P +     D +G TPLH A  N
Sbjct: 66  KDSDGKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAEN 113
Query: 145 KHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
            H+ VV++L+ +   P    +   +TPL +A
Sbjct: 114 GHKEVVKLLLSQGADP-NTSDSDGRTPLDLA 143

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G+TPLH+AA  G   +V  +L+          ++P +     D +G TPLH A  N H+ 
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAENGHKE 84
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD----SLDHRLPEELT 204
           VV++L+ +   P    +   +TPL +A ++   ++   ++ Q  D      D R P +L 
Sbjct: 85  VVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
Query: 205 LLHS 208
             H 
Sbjct: 144 REHG 147

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +    +GNT LH+A  + +H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADY-DHLEIVEVLLKHGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
            H+  G TPLH+AA  G   IV  +L +  A  N  +   ++   I+ D GN  L
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+ +    H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVN-NGHLEIIEVLLKYAADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AA  G   IV  +L Y   +               D +G TPLH A  
Sbjct: 75  ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------AMDYQGYTPLHLAAE 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
           + H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 DGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A R   H  + ++L +  + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
                  E  + +   D  G TPLH A RN H  VV++L++     +   +K  +TPL +
Sbjct: 56  -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHL 107
Query: 175 AIDSSLTDIACFIID 189
           A  +   ++   +++
Sbjct: 108 AARNGHLEVVKLLLE 122

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ +     G T LH+A  F  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLA-AFNGHLEIVEVLLKNGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPL +AA  G   IV  +L       NG +      +   D EG+TPLH A  
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLL------KNGAD------VNANDMEGHTPLHLAAM 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+ K+   +   +K  +T   I+ID+   D+A
Sbjct: 123 FGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+  +   H  + ++L +   ++      G TPLH+A+  G+  +V  +L +   
Sbjct: 278 GLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +   T+             G +PLH A +  H ++V +L+K    P   ++    TPLAI
Sbjct: 337 VNAKTKL------------GYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAI 383
Query: 175 AID---SSLTDIACFIIDQ 190
           A      S+TD+   + D+
Sbjct: 384 AKRLGYISVTDVLKVVTDE 402

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A     HK I ++L  + +     +  G TPLH AA  G   IV  +L+    
Sbjct: 37  GRTPLHYAAE-NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS---- 91
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
                 ++P +     D +G TPLH A  N H+ +V++L+ K   P    +   +TPL +
Sbjct: 92  ----KGADPNA----KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDL 142
Query: 175 AIDSSLTDIACFIIDQ 190
           A +    +I   +  Q
Sbjct: 143 AREHGNEEIVKLLEKQ 158

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A R   H  + ++L +  + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
                  E  + +   D  G TPLH A RN H  VV++L++
Sbjct: 56  -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G TPLH+AAR G   +V  +L            E  + +   D  G TPLH A RN H  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
           VV++L++     +   +K  +TPL +A  +   ++   +++
Sbjct: 50  VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     ++ ++    G T LH+A  F  H  I E+L +  + + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYF-GHLEIVEVLLKNGADVN 74
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AA  G   +V  +L       NG +      +   D  G TPLH A  
Sbjct: 75  ADDSLGVTPLHLAADRGHLEVVEVLL------KNGAD------VNANDHNGFTPLHLAAN 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 123 IGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 25  LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
           L+     G++ +++ +     ++ ++ S  G T LH A     HK + ++L  + + +  
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAE-NGHKEVVKLLISKGADVNA 65
Query: 85  HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
            +  G TPLH AA  G   +V  +      I+ G +      +   D +G TPLH+A  N
Sbjct: 66  KDSDGRTPLHHAAENGHKEVVKLL------ISKGAD------VNAKDSDGRTPLHHAAEN 113
Query: 145 KHENVVRMLVKK 156
            H+ VV++L+ K
Sbjct: 114 GHKEVVKLLISK 125

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
           +LL   R G + ++R +     +  +     G T LHMA     H  I E+L +  + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAV-GHLEIVEVLLRNGADVN 62
Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             +  G TPLH+AA +G   IV  +L Y      G +   +      D  G TPL+ A  
Sbjct: 63  AVDTNGTTPLHLAASLGHLEIVEVLLKY------GADVNAK------DATGITPLYLAAY 110
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             H  +V +L+K     +   +K  +T   I+ID    D+A
Sbjct: 111 WGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDIGNEDLA 150

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 20  TMDHELLNVLRRGDEH---------QIRPIAGRMQN-IFSTMSPRGNTVLHMAIRFRNHK 69
           T+  E L +  R D H           R ++ R+ + + +     GNT LH ++   N  
Sbjct: 66  TVLQEWLRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFP 125
Query: 70  VIPEILRQQDSLLRKHNLKGETPLHIAA-----------------RVGD---PAIVSTIL 109
           V+ ++L      + K N  G +P+ + A                 R+G+    A  +   
Sbjct: 126 VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185
Query: 110 NYVPAITNGTESEPESLL------RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY 163
             + A+++G     ++LL       + DD+G+T L  A  + H+ +  +L+      +  
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Query: 164 INKAEQTPLAIAIDSSLTDIACFI 187
            ++   T L +A+D+  ++IA  +
Sbjct: 246 TDRDGSTALMVALDAGQSEIASML 269

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 51  MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG---ETPLHIAARVGDPAIVST 107
           ++  G++ LH+AI      +  E++RQ    L   N +    +TPLH+A     P I   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 160
           +L        G   +PE    + D  GNTPLH A        V +L +    P
Sbjct: 64  LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G++  + AI   N +++  +L        K+ L+ E PLH AA + D  IV  +L     
Sbjct: 31  GHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILL----- 82
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
             +G +          DD+GNT L+ AV + +   V++ VKK+     Y     +T    
Sbjct: 83  -FSGLDDSQ------FDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYH 135
Query: 175 AIDSSLTDIACFIIDQRPDSLD 196
           A+  +   I  + + + P + D
Sbjct: 136 AVXLNDVSIVSYFLSEIPSTFD 157

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 51  MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG---ETPLHIAARVGDPAIVST 107
           ++  G++ LH+AI      +  E++RQ    L   N +    +TPLH+A     P I   
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 160
           +L        G   +PE    + D  GNTPLH A        V +L +    P
Sbjct: 61  LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 24  ELLNVLRRGDEHQIRPIAGRMQNI--FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSL 81
           +LL   R G + ++R +   M N   F+T    G + LH+A ++ +      +LR   S 
Sbjct: 5   KLLEAARAGQDDEVRIL---MANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 82  LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA 141
             +  +   TPLH+AA  G   IV  +L +      G +   + +L++T       LH A
Sbjct: 61  DARTKVD-RTPLHMAASEGHANIVEVLLKH------GADVNAKDMLKMT------ALHWA 107
Query: 142 VRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
             + H+ VV +L+K     +   +K  +T   I+ID+   D+A
Sbjct: 108 TEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA 149

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 18  PATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQ 77
           P  MD ++    R G+   +R      +N  +     G + LH A R      + E+L  
Sbjct: 3   PEFMD-DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIM 60
Query: 78  QDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTP 137
           + + +   N   +TPLH+AA  G   IV  +L Y   I               ++ GN P
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVP 108
Query: 138 LHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL 172
           LH A     + V   LV    + +   NK  + P+
Sbjct: 109 LHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPV 142

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72  PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
           PEI R+   LLR  N  LK   G   +H AAR G    + T+L +            ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
           + I D+EGN PLH A +  H  VV  LVK     +G+ N    T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72  PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
           PEI R+   LLR  N  LK   G   +H AAR G    + T+L +            ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
           + I D+EGN PLH A +  H  VV  LVK     +G+ N    T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 52  SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
           S  GNT LH A +  + + + ++L  + + +   +  G TPLH+AA+ G   IV  +L  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-- 62
Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 153
                 G +    S       +GNTP H A +N H  +V++L
Sbjct: 63  ----AKGADVNARS------KDGNTPEHLAKKNGHHEIVKLL 94

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72  PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
           PEI R+   LLR  N  LK   G   +H AAR G    + T+L +            ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
           + I D+EGN PLH A +  H  VV  LVK     +G+ N    T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72  PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
           PEI R+   LLR  N  LK   G   +H AAR G    + T+L +            ++ 
Sbjct: 50  PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
           + I D+EGN PLH A +  H  VV  LVK     +G+ N    T   +A
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	5e-13
2pnn_A	273	Transient receptor potential cation channel subfa	1e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	9e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2etb_A	256	Transient receptor potential cation channel subfam	3e-11
2etb_A	256	Transient receptor potential cation channel subfam	5e-11
2etb_A	256	Transient receptor potential cation channel subfam	6e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T LH+A+   N   I E L          + +G TPLH+A   G  A V  +      
Sbjct: 45  QQTPLHLAVI-TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL------ 97

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAEQ--- 169
             + T     S+L+ T+  G+T LH A  + +  +V +LV    D      +N  E    
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNG 151

Query: 170 -TPLAIAIDSSLTDIACFIIDQR--PDSLDHRLPEELTLLHSAVMRQN 214
            T L +A+D    D+   ++      + + +   +  +       R +
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCGADVNRVTY---QGYSPYQLTWGRPS 196

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 39/177 (22%), Positives = 60/177 (33%), Gaps = 38/177 (21%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKH-------NLKGETPLHIAARVGDPAIVST 107
           G++ LH+AI      +  E++R     ++         N   +TPLH+A     P I   
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIR----QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE- 62

Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN 165
            L     +  G +        + D  GNTPLH A        V +L +          + 
Sbjct: 63  AL-----LGAGCD------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 166 ---KAEQTPLAIAIDSSLTDIACFIIDQR-----PDSLDHRLPEELTLLHSAVMRQN 214
                  T L +A       I   ++         +  + R     T LH AV  QN
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR-----TALHLAVDLQN 163

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.9 bits (159), Expect = 5e-13
 Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 26/166 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL------RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
           GNT LH+A   +       +L          S+L+  N  G T LH+A+  G   IV  +
Sbjct: 78  GNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE-L 135

Query: 109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN--- 165
           L     ++ G +   +         G T LH AV  ++ ++V +L+K        +N   
Sbjct: 136 L-----VSLGADVNAQ-----EPCNGRTALHLAVDLQNPDLVSLLLKCG----ADVNRVT 181

Query: 166 KAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM 211
               +P  +      T I   +     ++L   LPE          
Sbjct: 182 YQGYSPYQLTWGRPSTRIQQQLGQLTLENL-QMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLL-RKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           G+T LH+A     +  I E+L    + +  +    G T LH+A  + +P +VS +L    
Sbjct: 117 GHTCLHLASI-HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LL---- 170

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA 173
            +  G +      +     +G +P           + + L +     L  + ++E    +
Sbjct: 171 -LKCGAD------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE-DEES 222

Query: 174 IAIDSSLTDIA 184
              +S  T+  
Sbjct: 223 YDTESEFTEFT 233

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A  F  H  I + L Q+ +     N+K ETPLH+AAR G   +    L     
Sbjct: 14  GLTPLHVAS-FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK-YL----- 66

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QTP 171
           + N  +      +     +  TPLH A R  H N+V++L++ +       N A     TP
Sbjct: 67  LQNKAK------VNAKAKDDQTPLHCAARIGHTNMVKLLLENN----ANPNLATTAGHTP 116

Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM 211
           L IA      +    ++++          +  T LH A  
Sbjct: 117 LHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAK 155

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           +  T LHMA R   H  + + L Q  + +       +TPLH AAR+G   +V  +L    
Sbjct: 46  KVETPLHMAAR-AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE--- 101

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA 173
              N           +    G+TPLH A R  H   V  L++K+      + K   TPL 
Sbjct: 102 ---NNANPN------LATTAGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLH 151

Query: 174 IAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
           +A       +A  ++++     +      LT LH AV
Sbjct: 152 VAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAV 187

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 5e-14
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G+T LH+A R   H      L ++++       KG TPLH+AA+ G   +   +L     
Sbjct: 113 GHTPLHIAAR-EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE-LL----- 165

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQTP 171
           +                  G TPLH AV + + ++V++L+ +     G  +       TP
Sbjct: 166 LERDAHPN------AAGKNGLTPLHVAVHHNNLDIVKLLLPRG----GSPHSPAWNGYTP 215

Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
           L IA   +  ++A  ++       +    + +T LH A 
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 15/156 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A+   N+  I ++L  +          G TPLHIAA+     +  ++L Y   
Sbjct: 179 GLTPLHVAVHH-NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--- 234

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
              G  +           +G TPLH A +  H  +V +L+ K        NK+  TPL +
Sbjct: 235 ---GGSAN------AESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHL 284

Query: 175 AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
                   +A  +I      +D       T LH A 
Sbjct: 285 VAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A +   H  +  +L  + +     N  G TPLH+ A+ G   +   ++     
Sbjct: 245 GVTPLHLAAQ-EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---- 299

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
             +G   +       T   G TPLH A    +  +V+ L++     +    K   +PL  
Sbjct: 300 --HGVMVD------ATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQ 350

Query: 175 AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
           A     TDI   ++       +    +  T L  A 
Sbjct: 351 AAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAK 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 5e-11
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A  + N K++ + L Q  + +      G +PLH AA+ G   IV+ +L     
Sbjct: 311 GYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK---- 365

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             NG              +G TPL  A R  + +V  +L   
Sbjct: 366 --NGASPN------EVSSDGTTPLAIAKRLGYISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 24/129 (18%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G TPLH+A+ +G   IV  +L        G          +++ +  TPLH A R  H  
Sbjct: 14  GLTPLHVASFMGHLPIVKNLLQ------RGASPN------VSNVKVETPLHMAARAGHTE 61

Query: 149 VVRMLVKKDRIPLGYINKA---EQTPLAIAIDSSLTDIACFIIDQ--RPDSLDHRLPEEL 203
           V + L++        +N     +QTPL  A     T++   +++    P+          
Sbjct: 62  VAKYLLQNK----AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT---AGH 114

Query: 204 TLLHSAVMR 212
           T LH A   
Sbjct: 115 TPLHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQTPLAIAIDSSLTDIAC 185
              + G TPLH A    H  +V+ L+++        N +    +TPL +A  +  T++A 
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRG----ASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 186 FIIDQRPDSLDHRLPEELTLLHSAV 210
           +++  +   ++ +  ++ T LH A 
Sbjct: 65  YLLQNKAK-VNAKAKDDQTPLHCAA 88

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 32/159 (20%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIV--------- 105
           G   +H+A+   N   +   L      +     +G+ P  +     +  +          
Sbjct: 84  GQKPIHLAVMA-NKTDLVVAL------VEGAKERGQMPESLLNECDEREVNEIGSHVKHC 136

Query: 106 --STILNYVPAITNGTESEP--ESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVK 155
              T L++   +  G E     + L++        D    TPL  A+  ++   + +++ 
Sbjct: 137 KGQTALHW--CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 156 KDRIPLG----YINKAEQTPLAIAIDSSLTDIACFIIDQ 190
                      Y NK   + L  AI  +  D+A   ++ 
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 29/160 (18%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               +H+A R +        L +        N  G T LH+A + G        L     
Sbjct: 20  NMEKIHVAAR-KGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK-YL----- 72

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
            + G           +   G  P+H AV     ++V  LV+          +  Q P ++
Sbjct: 73  ASVGEV--------HSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESL 117

Query: 175 AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
             +    ++       +         +  T LH  V    
Sbjct: 118 LNECDEREVNEIGSHVKHC-------KGQTALHWCVGLGP 150

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 31/177 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL-----KGETPLHIAARVGDPAIVSTIL 109
             T L  A+ F  ++   +++           L     +G + LH A  +    +     
Sbjct: 173 DETPLMRAMEF-RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA-MRF 230

Query: 110 NYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG------- 162
                +  G +        + D+E   PL+ +VR     + + L++K  + L        
Sbjct: 231 -----VEMGIDVN------MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 163 -----YINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
                         +  A D S  ++   + ++  + +   L            +  
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAA 335

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 27/134 (20%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK-------------GETPLHIAARVGD 101
               L++++R     ++ + L Q+  +                        +  AA    
Sbjct: 244 HTVPLYLSVR-AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

Query: 102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL 161
             ++  +           E         + + G        +     V RM +     P+
Sbjct: 303 QEVLQLL------QEKLDEVV------RSLNTGAGGAVKRKKKAAPAVKRMKLAPS-APV 349

Query: 162 GYINKAEQTPLAIA 175
              +++     A++
Sbjct: 350 RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 21/106 (19%)

Query: 88  KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 147
           +    +H+AAR G    V   L     I  G          I +  G T LH A +    
Sbjct: 19  ENMEKIHVAARKGQTDEVR-RL-----IETGVSPT------IQNRFGCTALHLACKFGCV 66

Query: 148 NVVRMLVKK--DRIPLGYINKAE-QTPLAIAIDSSLTDIACFIIDQ 190
           +  + L             +    Q P+ +A+ ++ TD+   +++ 
Sbjct: 67  DTAKYLASVGEV------HSLWHGQKPIHLAVMANKTDLVVALVEG 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 11/66 (16%)

Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKA---EQTPLAIAIDSSLTDIA 184
           +DDE    +H A R    + VR L++                   T L +A      D A
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTALHLACKFGCVDTA 69

Query: 185 CFIIDQ 190
            ++   
Sbjct: 70  KYLASV 75

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.0 bits (170), Expect = 1e-14
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A+  +    + + L +  + +R  +   + PLH AA VG   ++  +     +
Sbjct: 107 GVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
             N             D +G TPL +A+   H +   +LV+K       ++        +
Sbjct: 166 AVN-----------WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 175 AID 177
           A++
Sbjct: 215 ALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
            N  LH A        + E+L  + SLL + +  G  PLH +       I S +      
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL------ 55

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR-IPLGYINKAEQTPLA 173
           ++       +      DD G TP H A    +  VV+ L  +     L  I     T L 
Sbjct: 56  LSKMENVNLDD---YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112

Query: 174 IAIDSSLTDIACFIIDQ 190
           +A+     +++ F+I+ 
Sbjct: 113 LAVGKKWFEVSQFLIEN 129

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.2 bits (160), Expect = 3e-13
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 21/170 (12%)

Query: 46  NIFSTMSPRGNTVLHMAIRFRNHKVIPEIL--RQQDSLLRKHNLKGETPLHIAARVGDPA 103
           N+       G T  H+A     +  + + L  R     L K   +G T LH+A       
Sbjct: 63  NLDDYPDDSGWTPFHIAC-SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 104 IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY 163
           +    L     I NG        +RI D     PLH A       ++ +L    +  + +
Sbjct: 122 VSQ-FL-----IENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 164 INKAEQTPLAIAIDSSLTDIACFIIDQR---PDSLDHRLPEELTLLHSAV 210
            +K   TPL  A+     D A  ++++     D +D+   +       A+
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN---KGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 5e-12
 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 21/142 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK---GETPLHIAARVGDPAIVSTILNY 111
           G   LH ++ F     I   L  +   +   +     G TP HIA  VG+  +V   L  
Sbjct: 36  GRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV-KSL-- 91

Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAE 168
                   + +         ++G T LH AV  K   V + L++        +    K  
Sbjct: 92  ---YDRPLKPDLNK----ITNQGVTCLHLAVGKKWFEVSQFLIENG----ASVRIKDKFN 140

Query: 169 QTPLAIAIDSSLTDIACFIIDQ 190
           Q PL  A       +   +   
Sbjct: 141 QIPLHRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.1 bits (121), Expect = 7e-08
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQ-DSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
               LH A        + E+L     S +   + +G TPL  A   G       ++    
Sbjct: 140 NQIPLHRAASV-GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
           A  +           + D++G      A+   +E V +  + 
Sbjct: 199 AEYD-----------LVDNKGAKAEDVAL---NEQVKKFFLN 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 26/146 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKH-------NLKGETPLHIAARVGDPAIVST 107
           G+T LH+A+  + +      L    +L ++        N   +TPLH+A     P++V  
Sbjct: 9   GDTPLHIAVV-QGNLPAVHRL---VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR- 63

Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN-- 165
           +L     +T G            D  G T  H A  ++    +R L+         +   
Sbjct: 64  LL-----VTAGASPM------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 166 -KAEQTPLAIAIDSSLTDIACFIIDQ 190
                T L +A+++   +    ++++
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK-GETPLHIAARVGDPAIVSTILNYVP 113
           G T LH+A+     +   ++L ++ + +   ++K G +PL  A      ++V  +L    
Sbjct: 116 GLTALHVAV-NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LL---- 169

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQT 170
            + +G               G++ LH+A       +VR LV+         +       T
Sbjct: 170 -LQHGANVN------AQMYSGSSALHSASGRGLLPLVRTLVRSG----ADSSLKNCHNDT 218

Query: 171 PLAIAIDSSLTDIACFIIDQ 190
           PL +A    + DI      +
Sbjct: 219 PLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.6 bits (143), Expect = 7e-11
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G+TPLHIA   G+   V  ++N       G E +      I ++   TPLH AV     +
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLF--QQGGRELD------IYNNLRQTPLHLAVITTLPS 60

Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ---RPDSLDHRLPEELTL 205
           VVR+LV         +++  QT   +A +         ++D        L+ R  + LT 
Sbjct: 61  VVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 206 LHSAVMR 212
           LH AV  
Sbjct: 120 LHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 24/165 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T LH+A+       +  +L    +     +  G+T  H+A     P  +   L     
Sbjct: 46  RQTPLHLAVI-TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR-AL----- 98

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV-------KKDRIPLGYINKA 167
           + +      +  L   + +G T LH AV  + +  V++L+         D        K+
Sbjct: 99  LDSAAPGTLD--LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD-------IKS 149

Query: 168 EQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR 212
            ++PL  A++++   +   ++    + ++ ++    + LHSA  R
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQTPLAIAIDSSLTDIACFI 187
           D++G+TPLH AV   +   V  LV   +     ++      QTPL +A+ ++L  +   +
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 188 IDQ--RPDSLDHRLPEELTLLHSAV 210
           +     P +LD       T  H A 
Sbjct: 66  VTAGASPMALDR---HGQTAAHLAC 87

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             + L +A +  + + + ++L+ +   + +    GET LHIAA   +      ++   P 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYINKA 167
           +     +           EG T LH AV N++ N+VR L+        +    + +    
Sbjct: 63  LVFEPMTS-------ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 168 E-----QTPLAIAIDSSLTDIACFIIDQ 190
                 + PL+ A      +I   +I+ 
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 35/160 (21%)

Query: 54  RGNTVLHMAIRFRNHKVIPEIL-------------RQQDSLLRKHNLKGETPLHIAARVG 100
            G T LH+A+    +  +   L                          GE PL  AA VG
Sbjct: 74  EGQTALHIAVI-NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132

Query: 101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK----- 155
              IV  +L     I +G +      +R  D  GNT LH  +   ++     +       
Sbjct: 133 SEEIVR-LL-----IEHGAD------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

Query: 156 ----KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR 191
                 +      N    TP  +A       +   ++ +R
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 7e-14
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 20/161 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               L  A R  N + +  +L   +      + +  TPLH+AA      IV  +L     
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ-LL----- 77

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTP 171
           + +G +          D  G  PLHNA    H  V  +L+K        +N     + TP
Sbjct: 78  LQHGADVH------AKDKGGLVPLHNACSYGHYEVTELLLKHG----ACVNAMDLWQFTP 127

Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR 212
           L  A   +  ++   ++    D          + +  A   
Sbjct: 128 LHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T LH A   +N   +  +L    +     N  G++ + +A        ++        
Sbjct: 124 QFTPLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL 182

Query: 115 I---TNGTESEPESLLR------ITDDEGNTPLHNAVRNKHEN---VVRMLVKKDRIPLG 162
           +        ++ +  L              T LH AV + H     V  +L++K     G
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-----G 237

Query: 163 ----YINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
                 NK   TPL +A + +  D+   +       ++       T LH A 
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 36/161 (22%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           R +T LH+A  + N   I ++L Q  + +   +  G  PLH A   G   +   +L    
Sbjct: 57  RKSTPLHLAAGY-NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE-LL---- 110

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE--- 168
            + +G            D    TPLH A       V  +L+    D              
Sbjct: 111 -LKHGACVN------AMDLWQFTPLHEAASKNRVEVCSLLLSHGAD------PTLVNCHG 157

Query: 169 QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA 209
           ++ + +A    L +   +                 +LL +A
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGH------------SLLQAA 186

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 55  GNTVLHMAIR--FRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV 112
             T LH A+       K + E+L ++ + + + N    TPLH+AA      ++  +    
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-- 268

Query: 113 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL 172
               +G +          D  G T LH A    H    R+L+         I+    T  
Sbjct: 269 ----HGAKMN------ALDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAA 317

Query: 173 AIAID 177
            +  +
Sbjct: 318 QMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 9e-11
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 25/134 (18%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G   LH A  +  H  + E+L +  + +   +L   TPLH AA      + S +L     
Sbjct: 91  GLVPLHNACSY-GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS-LL----- 143

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +++G +        + +  G + +  A   +    +    K              + L  
Sbjct: 144 LSHGADPT------LVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQA 185

Query: 175 AIDSSLTDIACFII 188
           A ++ L  +   + 
Sbjct: 186 AREADLAKVKKTLA 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T LH+A   R H  + E+L +  + +   +  G+T LH AA  G       +L     
Sbjct: 247 FMTPLHVAAE-RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC-RLL----- 299

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
           ++ G++        I   +G T         +E V ++L +
Sbjct: 300 LSYGSDPS------IISLQGFTAAQMG----NEAVQQILSE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 13/123 (10%)

Query: 88  KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 147
             +  L  AAR G+   +  +L                    +D   +TPLH A      
Sbjct: 23  YKKDELLEAARSGNEEKLMALL-----TPLNVNCH------ASDGRKSTPLHLAAGYNRV 71

Query: 148 NVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLH 207
            +V++L++     +   +K    PL  A      ++   ++      ++     + T LH
Sbjct: 72  RIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLH 129

Query: 208 SAV 210
            A 
Sbjct: 130 EAA 132

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 16/129 (12%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSL---LRKHNLKGETPLHIAARVGDPAIVSTILN 110
            G   L +A    N   I + L Q       +   +  G T LH    V D  + +T   
Sbjct: 147 FGELPLSLAAC-TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 111 ---YVPAITNGTE-SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINK 166
              Y   +  G +      L  IT+ +G TPL  A  +    V+  +++++         
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------I 257

Query: 167 AEQTPLAIA 175
            E      A
Sbjct: 258 HEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 39/186 (20%), Positives = 59/186 (31%), Gaps = 47/186 (25%)

Query: 54  RGNTVLHMAIRFRNHKVIPEIL---------RQQDSLLRKHNLK-----GETPLHIAARV 99
           +G T LH+AI  R +  +  +L                +K   +     GE PL +AA  
Sbjct: 100 KGQTALHIAIE-RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158

Query: 100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML------ 153
              AIV  +L       +         +   D  GNT LH  V      V          
Sbjct: 159 NQLAIVKFLLQNSWQPAD---------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 154 -----VKKDRIPLGYI----NKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELT 204
                +     P   +    N+   TPLA+A  S    +  +I+ +           E  
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--------EPE 261

Query: 205 LLHSAV 210
             H+A 
Sbjct: 262 CRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKH---NLK----GETPLHIA---ARVGDPAI 104
               +  A+   N + +  +L       ++      K    G+T L  A      G    
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-------- 156
           ++ +L+     T+  +    +    +  +G T LH A+  ++  +V +LV+         
Sbjct: 73  IALLLDVA-RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 157 -----DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEEL--TLLHSA 209
                 +          + PL++A  ++   I  F++       D    + +  T+LH+ 
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

Query: 210 VMRQN 214
           V   +
Sbjct: 192 VEVAD 196

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 34/110 (30%)

Query: 54  RGNTVLHMAIRF-RNHKVIPEILRQQDSLLRKH--------------NLKGETPLHIAAR 98
            GNTVLH  +    N     + +    + +                 N KG TPL +AA 
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242

Query: 99  VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
            G   +++ IL                     +       H A  + H +
Sbjct: 243 SGKIGVLAYILQ-------------------REIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 19/105 (18%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYV-PAITNGTESEPESLLRITDDEGNTPLHNAV-- 142
            L     +  A    +   + ++L ++  +    T+SE +       + G T L  A+  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKD-----PETGKTCLLKAMLN 64

Query: 143 -RNKHENVVRMLVKKDR----------IPLGYINKAEQTPLAIAI 176
             N   + + +L+   R                    QT L IAI
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI 109

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 39/166 (23%), Positives = 53/166 (31%), Gaps = 39/166 (23%)

Query: 54  RGNTVLHMAIRFRNHKVIPEIL--------------RQQDSLLRKHNLKGETPLHIAARV 99
           RG T LH+AI  R  K   E+L                Q      +   GE PL +AA  
Sbjct: 92  RGQTALHIAIE-RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150

Query: 100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN---------VV 150
             P IV  +        +         LR  D  GNT LH  V               + 
Sbjct: 151 NQPHIVHYLTENGHKQAD---------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 151 RMLVKKD------RIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
            +L+ K             +N    +PL +A  +    I   II +
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 26/185 (14%)

Query: 55  GNTVLHMAIRFRN---HKVIPEILRQQDSLL----RKHNLKGETPLHIAA---RVGDPAI 104
              +L   +   +    + +   L      L     +    G+T L  A      G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-------- 156
           +  +L+      N  E        +    G T LH A+  + ++ V +LV+K        
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDV-YYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 157 -----DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEEL--TLLHSA 209
                     G      + PL++A  ++   I  ++ +      D R  +    T+LH+ 
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 210 VMRQN 214
           V   +
Sbjct: 184 VAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSL---LRKHNLKGETPLHIAARVGD---PAIVSTI 108
           G   L +A    N   I   L +       LR+ + +G T LH    + D          
Sbjct: 140 GELPLSLAAC-TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 109 LNYVPAITNGTE-SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
             Y   +    +     +L  + +++G +PL  A +     + + +++++
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 63.6 bits (156), Expect = 2e-13
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           RG T+LH+A   +      E L Q  S     +  G TPLH A   G   +V  +L    
Sbjct: 9   RGETLLHIASI-KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE-LL---- 62

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YINKAEQ 169
            + +            T  + ++PLH+A +N H ++V++L+       G     +N    
Sbjct: 63  -LQHKALVN------TTGYQNDSPLHDAAKNGHVDIVKLLLSY-----GASRNAVNIFGL 110

Query: 170 TPLAIAIDSSLTDIA 184
            P+    D S+  + 
Sbjct: 111 RPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 7e-11
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A     H  + E+L Q  +L+     + ++PLH AA+ G   IV  +L     
Sbjct: 43  GWTPLHEACN-HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIV-KLL----- 95

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
           ++ G            +  G  P+        ++++ +  K
Sbjct: 96  LSYGASRN------AVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 145
           N +GET LHIA+  GD   V   L     + NG++        + D  G TPLH A  + 
Sbjct: 7   NHRGETLLHIASIKGDIPSV-EYL-----LQNGSDPN------VKDHAGWTPLHEACNHG 54

Query: 146 HENVVRMLVKK 156
           H  VV +L++ 
Sbjct: 55  HLKVVELLLQH 65

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 11/51 (21%)

Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN---KAEQTPLAIA 175
           T+  G T LH A        V  L++   D       N    A  TPL  A
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD------PNVKDHAGWTPLHEA 50

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 21/155 (13%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVS------- 106
            G   +  A+ +      P+ L  ++  +       +T        G   ++        
Sbjct: 11  PGQVKVFRAL-YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 69

Query: 107 -----TILNYVPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVK 155
                  L+   A   G  S     L         D  G+T L+ A    H+++V ML  
Sbjct: 70  AESIDNPLHE--AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 156 KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
           +  I L   NK   T L  A      DI   ++ +
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL-RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           G+T L+ A     HK I E+L  Q +  L + N  G+T LH AA  G   IV  +L    
Sbjct: 106 GSTALYWACH-GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG- 163

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA 173
           A T+           + + E       A      ++++     D +     N  +     
Sbjct: 164 ARTD-----------LRNIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNAEDYLDDE 211

Query: 174 IA 175
            +
Sbjct: 212 DS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 89  GETPLHIAARVGDPAIVSTILN----------------YVPAITNGTESEPESLLRITDD 132
           G+  +  A    +P     +                  +       T   P + +    +
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE 71

Query: 133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRP 192
             + PLH A +  + + +R  +   R+ +  ++KA  T L  A      DI   +  Q  
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN 130

Query: 193 DSLDHRLPEELTLLHSAVMR 212
             L+ +     T LH+A  +
Sbjct: 131 IELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G+T LH A   + +  I ++L  + +     N++ +    +A      +++         
Sbjct: 140 GDTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKH 146
            T            +++ E      ++    H
Sbjct: 199 RT------------LSNAEDYLDDEDSDLEHH 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLL-RKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           G+T LH+A+       +  +LR   + L +     G TPLH+A      +++  +L    
Sbjct: 158 GHTPLHVAV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--- 213

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA 173
               G +             G TPL +A+   +  + R+L      P       + +P +
Sbjct: 214 ---AGADPT------ARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCS 263

Query: 174 IAIDSSLTDIA 184
            +   S +D  
Sbjct: 264 SSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 21/190 (11%)

Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
            +L  L+    H        +           +    +  +                 L 
Sbjct: 95  CVL--LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152

Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
             N  G TPLH+A    D  +V  +L        G +       +     G TPLH AV 
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVR-LL-----RDAGADLN-----KPEPTCGRTPLHLAVE 201

Query: 144 NKHENVVRMLVKKDRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLP 200
            +  +V+ +L+K                +TPL  A+      +A  +             
Sbjct: 202 AQAASVLELLLKAG----ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGG 256

Query: 201 EELTLLHSAV 210
           ++L+   S+ 
Sbjct: 257 DKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 30/176 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK---GETPLHIAARVGDPAIVSTILNY 111
           G+T LH+A+    H+   + L    +     +L+   G+T LH+AA +G+ + V   L  
Sbjct: 9   GDTALHLAV-IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE-KL-- 64

Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD------------RI 159
                 G          + +  G+T LH A R +      +L++                
Sbjct: 65  ---YAAGAGVL------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

Query: 160 PLGYINKAEQTPLAI-AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
                      P A+ +  +   +      D R   L+    +  T LH AV+ ++
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKD 170

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.0 bits (136), Expect = 8e-10
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 13/103 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A+       + E+L +  +        G TPL  A    +P +   +  +  A
Sbjct: 192 GRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG-A 249

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
                             +  +P  ++  +   +      + D
Sbjct: 250 PEP-----------EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 40/178 (22%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL---------RQQDSLLRKH----NLKGETPLHIAARVGD 101
           G+T LH+A R         +L            D+ L +           P  + ++   
Sbjct: 78  GHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV------- 154
                                        + +G+TPLH AV +K   +VR+L        
Sbjct: 137 ENEEEPRDEDWRLQLE-----------AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 155 KKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR 212
           K +           +TPL +A+++    +   ++    D    R+    T L SA++R
Sbjct: 186 KPE-------PTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QTPLAIAIDSSLTD 182
           +     ++G+T LH AV ++HE  +  L+        Y++      QT L +A       
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFS-AGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 183 IACFIIDQ 190
               +   
Sbjct: 60  TVEKLYAA 67

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.8 bits (159), Expect = 7e-13
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 22/143 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKH----NLK---GETPLHIAARVGDPAIVST 107
           G T L  A   + H  + +IL      L +     N     G   L  A    D + V  
Sbjct: 148 GATALMDAAE-KGHVEVLKIL------LDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA 167
           I + +  + +G +        +  + G TPL  AV  KH  +V+ L++++ I +   +  
Sbjct: 201 ITHLL--LDHGADVN------VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

Query: 168 EQTPLAIAIDSSLTDIACFIIDQ 190
            +T L +A++  L  IA  +  +
Sbjct: 253 GKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.3 bits (155), Expect = 3e-12
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 15/144 (10%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T   +A        + ++   + + + + +  G T    AA  G    +   L     
Sbjct: 72  GATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL-KFL----- 124

Query: 115 ITNG----TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT 170
              G       + +         G T L +A    H  V+++L+ +    +   +   + 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 171 PLAIAI----DSSLTDIACFIIDQ 190
            L  A+    DS +  I   ++D 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDH 208

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.0 bits (144), Expect = 9e-11
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 34/171 (19%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQD-SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
            N +L  A++      + + L +   ++  +    G TPLH A ++    IV  +L    
Sbjct: 5   DNHLLIKAVQN-EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE-LL---- 58

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKA---E 168
            + +G +        +    G TP   A       ++++ + K  D      +N+     
Sbjct: 59  -LRHGADPV------LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD------VNECDFYG 105

Query: 169 QTPLAIAIDSSLTDIACFII---------DQRPDSLDHRLPEELTLLHSAV 210
            T    A          F+           +  +  +       T L  A 
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 145
            ++    L  A +  D  +V   L     +  G     +      ++ G TPLHNAV+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLV-QQL-----LEGGANVNFQ-----EEEGGWTPLHNAVQMS 50

Query: 146 HENVVRMLVKK--DRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQ 190
            E++V +L++   D          +    TP  +A  +    +    + +
Sbjct: 51  REDIVELLLRHGAD------PVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 27/161 (16%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK-GETPLHIAARVGDPAIVSTILNYVP 113
           G++  + AI   N+  +   L    +L    NL   E PLH AA + D  IV  IL    
Sbjct: 31  GHSASYYAIA-DNNVRLVCTLLNAGALK---NLLENEFPLHQAATLEDTKIVK-IL---- 81

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA----EQ 169
            + +G +          DD+GNT L+ AV + +   V++ VKK+      +        +
Sbjct: 82  -LFSGLDDS------QFDDKGNTALYYAVDSGNMQTVKLFVKKN----WRLMFYGKTGWK 130

Query: 170 TPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
           T    A+  +   I  + + + P      L   L+ +H  +
Sbjct: 131 TSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG-ETPLHIAARVGDPAIVSTILNYVP 113
           GNT L+ A+    +    ++  +++  L  +   G +T  + A  + D +IVS  L+ +P
Sbjct: 95  GNTALYYAVD-SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           +                     + +H  ++N H +++ +L+  
Sbjct: 154 ST-------------FDLAILLSCIHITIKNGHVDMMILLLDY 183

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 25/139 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G  +    I     K +   L  +D    K ++ G +  + A    +  +V T+LN    
Sbjct: 1   GMDLSR--INTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLN---- 52

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQTP 171
              G              E   PLH A   +   +V++L+          ++      T 
Sbjct: 53  --AGAL--------KNLLENEFPLHQAATLEDTKIVKILLFSG----LDDSQFDDKGNTA 98

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L  A+DS         + +
Sbjct: 99  LYYAVDSGNMQTVKLFVKK 117

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 16/131 (12%), Positives = 38/131 (29%), Gaps = 26/131 (19%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETP-LHIAARVGDPAIVSTILNYVP 113
             + +H+ I+   H  +  +L    +    +N     P + +A    D  ++   L    
Sbjct: 161 LLSCIHITIKN-GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML-QAL---- 214

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN-KAEQTPL 172
                                 +     V      + +M+++K           +    L
Sbjct: 215 -FKYDIN-------------IYSANLENVLLDDAEIAKMIIEKH----VEYKSDSYTKDL 256

Query: 173 AIAIDSSLTDI 183
            I  ++ L +I
Sbjct: 257 DIVKNNKLDEI 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 114 AITNGTESEPESLLR-----ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE 168
            I      + +S L        D  G++  + A+ + +  +V  L+          N  E
Sbjct: 6   RINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG----ALKNLLE 61

Query: 169 -QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
            + PL  A     T I   ++    D       +  T L+ AV
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAV 103

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.4 bits (153), Expect = 1e-12
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 22/139 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T L + +       I   L +Q +     +  G +P+H AAR G    +  +L     
Sbjct: 36  GKTALQVMMF--GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTL-KVL----- 87

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QTP 171
           + +G +        + D  G  P+H AV+  H  VV  L  +       +++ +    TP
Sbjct: 88  VEHGADVN------VPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTP 136

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L +A+     D+   +   
Sbjct: 137 LELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.5 bits (148), Expect = 5e-12
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 24/127 (18%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           R    L  A    + + +  +L ++       N  G+T L +    G  AI   +L    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK--- 56

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE--- 168
               G          + D  G +P+H+A R    + +++LV+   D      +N  +   
Sbjct: 57  ---QGASPN------VQDTSGTSPVHDAARTGFLDTLKVLVEHGAD------VNVPDGTG 101

Query: 169 QTPLAIA 175
             P+ +A
Sbjct: 102 ALPIHLA 108

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             + LH A     H  I  +L Q  + +   +    TPL  AA       V   L     
Sbjct: 11  KRSPLHAAAE-AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK-YL----- 63

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           I  G   +        D EG+T LH A +  H  VV+ L+   ++ +   +    TP+  
Sbjct: 64  IKAGALVD------PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

Query: 175 AIDSSLTDIACFIIDQ 190
           A +    D+   ++ +
Sbjct: 118 ATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
            N  LH A  F     I EIL      L   N+ G++PLHIAAR      V  +      
Sbjct: 144 ENICLHWAA-FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV-VLF----- 196

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           ++  ++        + + EG TPL  A  N        + K 
Sbjct: 197 LSRDSDVT------LKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T +  A     H  + ++L  + S +   + +    LH AA  G   I   IL     
Sbjct: 111 GWTPMIWATE-YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE-IL----- 163

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +    +          +  G++PLH A R    + V + + +D   +   NK  +TPL  
Sbjct: 164 LAAKCDLH------AVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQC 216

Query: 175 AIDSSLTDIACFIIDQRPDS 194
           A  +S    A  +     DS
Sbjct: 217 ASLNSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL-RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           G+T LH+A + + H  + + L       +   +  G TP+  A       +V  +L    
Sbjct: 77  GSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV-KLL---- 130

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA 173
            ++ G++        I D+E N  LH A  +   ++  +L+      L  +N    +PL 
Sbjct: 131 -LSKGSDIN------IRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLH 182

Query: 174 IAIDSSLTDIACFIIDQ 190
           IA   +  D     + +
Sbjct: 183 IAARENRYDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 7e-11
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T L  A    NH    + L +  +L+   + +G T LH+AA+ G   +V  +L+    
Sbjct: 44  QRTPLMEAAE-NNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTP 171
             N             DD G TP+  A   KH ++V++L+ K       IN     E   
Sbjct: 103 DVN-----------CQDDGGWTPMIWATEYKHVDLVKLLLSKG----SDINIRDNEENIC 147

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L  A  S   DIA  ++  
Sbjct: 148 LHWAAFSGCVDIAEILLAA 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 19/124 (15%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
             +PLH AA  G   I   +L     +  G   +         ++  TPL  A  N H  
Sbjct: 11  KRSPLHAAAEAGHVDIC-HML-----VQAGANID------TCSEDQRTPLMEAAENNHLE 58

Query: 149 VVRMLVKKDRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL 205
            V+ L+K        ++  +    T L +A      ++  +++      ++ +     T 
Sbjct: 59  AVKYLIKAG----ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114

Query: 206 LHSA 209
           +  A
Sbjct: 115 MIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
           +      +PLH A    H ++  MLV+     +   ++ ++TPL  A +++  +   ++I
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 189 DQRPDSLDHRLPEELTLLHSAV 210
                 +D +  E  T LH A 
Sbjct: 65  KAGAL-VDPKDAEGSTCLHLAA 85

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.6 bits (151), Expect = 2e-12
 Identities = 28/142 (19%), Positives = 43/142 (30%), Gaps = 20/142 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T L  A        + E L Q  +  +      E+ L +A   G   IV  +L     
Sbjct: 36  GFTPLMWAAA-HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIV-KML----- 88

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QTP 171
           +  G +          D  G TPL  AV   H   V+ML++                   
Sbjct: 89  LDCGVDVN------EYDWNGGTPLLYAVHGNHVKCVKMLLESG----ADPTIETDSGYNS 138

Query: 172 LAIAIDSSLTDIACFIIDQRPD 193
           + +A+      +   I      
Sbjct: 139 MDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 23/110 (20%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
               +H  A  G+   ++        I              TD+EG TPL  A  +    
Sbjct: 3   NSLSVHQLAAQGEMLYLA-TR-----IEQENVIN------HTDEEGFTPLMWAAAHGQIA 50

Query: 149 VVRMLVKK--DRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQRPD 193
           VV  L++   D              ++ L++A     TDI   ++D   D
Sbjct: 51  VVEFLLQNGAD------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 22/163 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             + +H A     H++    L  Q   +        +PLH A   G  + V  IL     
Sbjct: 59  DWSPMHEAAIH-GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK-IL----- 111

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG-YINKA--EQTP 171
           + +G +            + +TPL NA  +   + V +L++      G  +       +P
Sbjct: 112 LKHGAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQH-----GASVQPESDLASP 160

Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
           +  A      +    +I    + +DH++    T L+ A   Q 
Sbjct: 161 IHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQ 202

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.7 bits (151), Expect = 9e-12
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 23/125 (18%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             + +H A R R H      L      +        TPL++A      A V   L     
Sbjct: 157 LASPIHEAAR-RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK-KL----- 209

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YINKAEQT 170
           + +G +              ++PLH  VR   E +  +L+       G      N   + 
Sbjct: 210 LESGADVN-------QGKGQDSPLHAVVRTASEELACLLMDF-----GADTQAKNAEGKR 257

Query: 171 PLAIA 175
           P+ + 
Sbjct: 258 PVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
              T L++A      +   + L +  + + +     ++PLH   R     +   +++   
Sbjct: 189 HLGTPLYLACE-NQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMD--- 243

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
               G +++        + EG  P+           +
Sbjct: 244 ---FGADTQ------AKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 29/130 (22%)

Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
           +  + G  P       G           +  ++N         L        +P+H A  
Sbjct: 28  QGGMDGSKPAGPRDFPG-----------IRLLSNP--------LMGDAVSDWSPMHEAAI 68

Query: 144 NKHENVVRMLVKKDRIPLGY-INKA---EQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL 199
           + H+  +R L+ +     G+ +N       +PL  A           ++      ++   
Sbjct: 69  HGHQLSLRNLISQ-----GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVT 122

Query: 200 PEELTLLHSA 209
            +  T L +A
Sbjct: 123 ADWHTPLFNA 132

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.6 bits (151), Expect = 2e-12
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T L +      +  I   L  + +     +  G   +H AAR G    +   L     
Sbjct: 38  GRTALQVMKL--GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ-TL----- 89

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +    +        I D+EGN PLH A +  H  VV  LVK     +G+ N    T   +
Sbjct: 90  LEFQADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

Query: 175 AIDSSLTDIACFIIDQ 190
           A      ++   +   
Sbjct: 144 ARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.9 bits (144), Expect = 2e-11
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 21/143 (14%)

Query: 51  MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN 110
           M+      L  A   R        L Q +  +   N  G T L +    G+P I    L 
Sbjct: 1   MAEPWGNELASAAA-RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIA-RRL- 56

Query: 111 YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KA 167
               +  G   +      + D  G   +H+A R    + ++ L++        +N     
Sbjct: 57  ----LLRGANPD------LKDRTGFAVIHDAARAGFLDTLQTLLEFQ----ADVNIEDNE 102

Query: 168 EQTPLAIAIDSSLTDIACFIIDQ 190
              PL +A       +  F++  
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKH 125

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.6 bits (151), Expect = 3e-12
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 24/142 (16%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G+T L  A++  N   I E L  + S +   +  G+TPL  +   G   +    L     
Sbjct: 68  GSTALIWAVK-NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS-YFL----- 120

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN---KAEQ 169
           + +G            + EG TPL  A +     +V+ L++   D      I+       
Sbjct: 121 LEHGANVN------DRNLEGETPLIVASKYGRSEIVKKLLELGAD------ISARDLTGL 168

Query: 170 TPLAIAIDSSLTDIACFIIDQR 191
           T  A A      ++     + R
Sbjct: 169 TAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.2 bits (142), Expect = 6e-11
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 36/144 (25%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK---GETPLHIAARVGDPAIVSTILNY 111
           G  V  +    ++     + LR         N +     TPL +A  +G    +   L  
Sbjct: 8   GEIVEKIKDE-KSINQNLDFLR---------NYRDSYNRTPLMVACMLGMENAID-KL-- 54

Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN---K 166
              + N  + E        D EG+T L  AV+N    +   L+ K  +      +N    
Sbjct: 55  ---VENFDKLE------DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDF 99

Query: 167 AEQTPLAIAIDSSLTDIACFIIDQ 190
           + +TPL  +I    ++++ F+++ 
Sbjct: 100 SGKTPLMWSIIFGYSEMSYFLLEH 123

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G   L    R  N +            ++ + L     L  ++  G+  +V  I+  V  
Sbjct: 5   GQVSLPPGKR-TNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE---Q 169
            +            + +DEG T LHNAV   H  +V+ LV+   +      +N A+    
Sbjct: 63  PS------------LPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGW 104

Query: 170 TPLAIAIDSSLTDIACFIIDQRPD--SLDHRLPEELTLLHSAV 210
           TPL  A   +   +  F+++      ++ +   +        +
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM 147

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A+    H  I + L Q    +   +  G TPLH AA   +  +   ++    A
Sbjct: 70  GITALHNAVC-AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +   T S         D +        +   +    + L       +G +NK     L  
Sbjct: 129 VFAMTYS---------DMQTAADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWD 178

Query: 175 A 175
            
Sbjct: 179 Y 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 15/86 (17%)

Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
           +  G   L    R          +    R+     N      L  +      D+   II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV---KFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 190 QRPDSLDHRLPEE-----LTLLHSAV 210
           +  D      P       +T LH+AV
Sbjct: 59  EVDD------PSLPNDEGITALHNAV 78

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 15/160 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
              + ++A        + E +    SL  + +    T LH A   G   IV   L     
Sbjct: 7   NIMICNLAYSG-KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFL----- 59

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           +  G            DD G +PLH A     + +V+ L+ K    +  +N+   TPL  
Sbjct: 60  LQLGVPVN------DKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHY 112

Query: 175 AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
           A   +  +IA  +++   +  D +   + T +H A  + N
Sbjct: 113 AASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A   +N   I  +L +  +     +    T +H AA  G+  +V  +L Y  +
Sbjct: 106 GCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
                         I D EGNTPLH A   +     + LV +    +   NK E+TPL +
Sbjct: 165 TN------------IQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQV 211

Query: 175 AIDSSLTDIACFIIDQ 190
           A       +    + +
Sbjct: 212 A--KGGLGLILKRLAE 225

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.5 bits (148), Expect = 4e-12
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 20/133 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G + LH+A +   H    E+L +             TPLH+AA  G   IV  +L     
Sbjct: 34  GTSPLHLAAQ-YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVE-VL----- 86

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTP 171
           + +G +          D    T LH A  + H+ VV +L+K        ++   K  +T 
Sbjct: 87  LKHGADVN------AKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTA 136

Query: 172 LAIAIDSSLTDIA 184
             I+ID+   D+A
Sbjct: 137 FDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 21/139 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               L  A R         IL    +     +  G +PLH+AA+ G  +    +L     
Sbjct: 2   LGKKLLEAARA-GQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTT-EVL----- 53

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTP 171
           +  G   +             TPLH A    H N+V +L+K        +N     + T 
Sbjct: 54  LRAGVSRD------ARTKVDRTPLHMAASEGHANIVEVLLKHG----ADVNAKDMLKMTA 103

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L  A + +  ++   +I  
Sbjct: 104 LHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.7 bits (133), Expect = 7e-10
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T LHMA     H  I E+L +  + +   ++   T LH A       +V  +L     
Sbjct: 67  DRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE-LL----- 119

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 153
           I  G +               T    ++ N +E++  +L
Sbjct: 120 IKYGADVH------TQSKFCKTAFDISIDNGNEDLAEIL 152

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 28/152 (18%)

Query: 55  GNTVLHMAIRFRNHKVIP----------EILRQQDSLLRKHNLKGETPLHIAARVGDPAI 104
           G T L +         +           ++     +       KG T LH AA+V +  I
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI 164
           V  ++    +  +             D++G TP+  A +     VV  L+++       +
Sbjct: 295 VKYLVGEKGSNKD-----------KQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASV 339

Query: 165 N---KAEQTPLAIAIDSSLTDIACFIIDQRPD 193
                 + T   +A  ++  +I       RP+
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.3 bits (152), Expect = 8e-12
 Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 22/143 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
                        +  + +       +  +   +    LH  A  G  AI   I      
Sbjct: 61  SLYPNPQGYG-NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVN 118

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI-------NKA 167
           I             I      T LH    N        L+  +              +  
Sbjct: 119 I-------------IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165

Query: 168 EQTPLAIAIDSSLTDIACFIIDQ 190
           E TPL +A+ +    +  +++  
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKA 188

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK---GETPLHIAARVGDPAIVST--IL 109
             + LH A        +   +     L          G T L I A       V++  +L
Sbjct: 199 ERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 110 NYVPAITNG--TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA 167
                +  G   + +  +       +G T LH A +  +  +V+ LV +        ++ 
Sbjct: 258 -----VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED 312

Query: 168 EQTPLAIAIDSSLTDIACFIIDQ 190
            +TP+ +A      ++  ++I Q
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQ 335

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 27/133 (20%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL-RQQDSLLRKH-------NLKGETPLHIAARVGDPAIVS 106
             TVLH      +     E L   +              +    TPL +A       +V+
Sbjct: 125 NRTVLHWIAS-NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183

Query: 107 TILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY-IN 165
             L     +  G +        I +    + LH A  N+   ++  ++      L   I 
Sbjct: 184 -YL-----MKAGADPT------IYNKSERSALHQAAANRDFGMMVYMLNST--KLKGDIE 229

Query: 166 KAE---QTPLAIA 175
           + +    T L I 
Sbjct: 230 ELDRNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 19/154 (12%), Positives = 37/154 (24%), Gaps = 28/154 (18%)

Query: 64  RFRNHKVI--PEILRQQ-DSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTE 120
           R   +  +  P +  ++ +    +     +  L  A+  G        L           
Sbjct: 9   RRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNEL----------- 57

Query: 121 SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL 180
                           P      N ++ +        +IP           L      S 
Sbjct: 58  ----------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY 106

Query: 181 TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
             I   I  +  + +D R     T+LH      +
Sbjct: 107 -AITEPITRESVNIIDPR--HNRTVLHWIASNSS 137

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 7e-12
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
                         +   + L        +H   G T LH+AA  G   ++  +L     
Sbjct: 166 IEAARKEE-ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLL----- 218

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YINKAEQT 170
           I    +      + I D +G TPLH A     E   R+LV+            +NK  QT
Sbjct: 219 IQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVEN-----LCDMEAVNKVGQT 267

Query: 171 PLAIAIDSSLTDIACFIIDQ 190
              +A +  L  +      Q
Sbjct: 268 AFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 21/155 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A    ++  + + L +  + + + + +G  PLH AA  G   I    L     
Sbjct: 73  GLTALHQACID-DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE-YL----- 125

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
           I+ G        +   + EG+TPL  A     E +++  V +  +    I          
Sbjct: 126 ISQGAH------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV---DIE----AARKE 172

Query: 175 AIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA 209
                L D   ++     +          T LH A
Sbjct: 173 EERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVA 206

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 20/159 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
              V   A            L ++ + +   N+ G T LH A    +  +V   L     
Sbjct: 40  DGAVFLAACS-SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK-FL----- 92

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQTP 171
           + NG            D+EG  PLH A    + ++   L+ +      ++        TP
Sbjct: 93  VENGANIN------QPDNEGWIPLHAAASCGYLDIAEYLISQG----AHVGAVNSEGDTP 142

Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
           L IA + ++ ++    ++++   ++    EE  ++    
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           +      +  R+   +   E    +    +            A   GD   V  +L    
Sbjct: 7   KQKRNEQLK-RWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLE--- 61

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQT 170
               G +          + +G T LH A  + + ++V+ LV+        IN+       
Sbjct: 62  ---RGADIN------YANVDGLTALHQACIDDNVDMVKFLVENG----ANINQPDNEGWI 108

Query: 171 PLAIAIDSSLTDIACFIIDQ 190
           PL  A      DIA ++I Q
Sbjct: 109 PLHAAASCGYLDIAEYLISQ 128

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A   + +  + ++L Q    +   +  G TPLH AA  G       IL     
Sbjct: 199 GGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC-RIL----- 251

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
           + N  +      +   +  G T    A  +    +  +  K++
Sbjct: 252 VENLCD------MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 16/108 (14%), Positives = 25/108 (23%), Gaps = 12/108 (11%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRK------HNLKGETPLHIAARVGDPAIVSTI 108
           G T+     +      I          L K           +  +              I
Sbjct: 75  GTTLFFPLFQ-GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133

Query: 109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             Y         S+    L I D  G T L    R +    ++M+   
Sbjct: 134 PLYKLIF-----SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 21/151 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRK------HNLKGETPLHIAARVGDPAIVSTI 108
            + +L+  +R  N +   +I      L+ K         +G T      + G   I  T 
Sbjct: 38  KSNILYDVLRNNNDEARYKISM---FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

Query: 109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH------ENVVRMLVKKDRIPLG 162
                 +  G +      +          +   + N          + +++  +  + L 
Sbjct: 95  ELCKIFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148

Query: 163 YINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
             +K   T L              + D    
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 23/172 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               +  A     ++   E+  +      K ++     L+   R  +      I  ++  
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFL-- 61

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV------VRMLVKKDRIPLGYINKAE 168
           I  G +      ++    EG T      +    ++       ++ ++K    +  + K  
Sbjct: 62  INKGAD------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPY 114

Query: 169 QTPLAIAI------DSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
           +  +   I      ++ +  +   I  Q    L  +    LT L      Q 
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 8/65 (12%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKH-------NLKGETPLHIAARVGDPAIVS 106
               V+   I F       E++     +  +        +  G T L    R   P  + 
Sbjct: 113 PYKIVVFKNI-FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 107 TILNY 111
            + +Y
Sbjct: 172 MMEDY 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.5 bits (148), Expect = 8e-12
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 21/143 (14%)

Query: 52  SPRGNTVLHMAIRFRNHKVIPEIL-RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN 110
           SP     +    R   + V   +     ++ L + +  G +PLH A R G  A+V  +L 
Sbjct: 2   SPEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVE-ML- 58

Query: 111 YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE-- 168
               I  G          + +   +TPLH A  + H ++V+ L++        IN     
Sbjct: 59  ----IMRGARIN------VMNRGDDTPLHLAASHGHRDIVQKLLQYK----ADINAVNEH 104

Query: 169 -QTPLAIAIDSSLTDIACFIIDQ 190
              PL  A       +A  ++  
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVAN 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
            +T LH+A     H+ I + L Q  + +   N  G  PLH A   G   +    L     
Sbjct: 72  DDTPLHLAASH-GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE-DL----- 124

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           + NG          I +  G  P+  A     E +     K 
Sbjct: 125 VANGALVS------ICNKYGEMPVDKAKAPLRELLRERAEKM 160

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.3 bits (150), Expect = 9e-12
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 25/142 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL-RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           G T LH A+   + + + +IL R + + L      G TPL +AAR+    ++   L    
Sbjct: 90  GRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML-EDL---- 143

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN---KAE 168
            I +  +          DD G + LH A    + +   +L+K   +       +     E
Sbjct: 144 -INSHADVN------AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNRE 190

Query: 169 QTPLAIAIDSSLTDIACFIIDQ 190
           +TPL +A      + A  ++D 
Sbjct: 191 ETPLFLAAREGSYETAKVLLDH 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.0 bits (144), Expect = 6e-11
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 19/139 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A R+ +     + L +  +     +  G TPLH A       +   IL     
Sbjct: 57  GETALHLAARY-SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ-IL----- 109

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTP 171
           I N         L     +G TPL  A R   E ++  L+         +N      ++ 
Sbjct: 110 IRNRATD-----LDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSA 160

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L  A   +  D A  ++  
Sbjct: 161 LHWAAAVNNVDAAVVLLKN 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G + LH A    N+     +L +  +     N + ETPL +AAR G       +L     
Sbjct: 157 GKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA-KVL----- 209

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           + +    +      ITD     P   A    H ++VR+L  +
Sbjct: 210 LDHFANRD------ITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 23/137 (16%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR-------ITDDEGNTPL 138
              G TPL IA+  G                    +     +         TD  G T L
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNS-----EEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 139 HNAVRNKHENVVRMLVKK--DRIPLGYIN---KAEQTPLAIAIDSSLTDIACFIIDQRPD 193
           H A R    +  + L++   D       N      +TPL  A+ +    +   +I  R  
Sbjct: 62  HLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115

Query: 194 SLDHRLPEELTLLHSAV 210
            LD R+ +  T L  A 
Sbjct: 116 DLDARMHDGTTPLILAA 132

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.1 bits (147), Expect = 9e-12
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQD-SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
            +  +H     +      +   ++  +L+ K + +G TPL  A+  G+   V  +L    
Sbjct: 2   DSLSIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE--- 57

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QT 170
               G +        I   E  + L  A    + ++V +L+++D      IN  +    T
Sbjct: 58  ---WGADPH------ILAKERESALSLASTGGYTDIVGLLLERD----VDINIYDWNGGT 104

Query: 171 PLAIA 175
           PL  A
Sbjct: 105 PLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             + L +A     +  I  +L ++D  +  ++  G TPL  A R      V  +L     
Sbjct: 69  RESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA---- 123

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
              G +           D G TP+  AV   +  V +++   
Sbjct: 124 --RGADLT------TEADSGYTPMDLAVALGYRKVQQVIENH 157

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.9 bits (144), Expect = 1e-11
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 24/126 (19%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
            +     A++        +    +   + +    G  PLH AA  G   I+   L     
Sbjct: 7   CDKEFMWALK-NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL-EFL----- 59

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE---Q 169
           +  G +          D    TPL +AV   H + V++L+ K  D               
Sbjct: 60  LLKGADIN------APDKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGL 107

Query: 170 TPLAIA 175
           T     
Sbjct: 108 TAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 54.7 bits (133), Expect = 3e-10
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 20/124 (16%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
            +     A + GD   V   +        G +         T + G  PLH A       
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVA------KGEDVN------RTLEGGRKPLHYAADCGQLE 54

Query: 149 VVRMLVKKDRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL 205
           ++  L+ K       IN  +    TPL  A+          ++ +  D    + P+ LT 
Sbjct: 55  ILEFLLLKG----ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTA 109

Query: 206 LHSA 209
             + 
Sbjct: 110 FEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G   LH A        I E L  + + +   +    TPL  A   G  + V  +L     
Sbjct: 40  GRKPLHYAADC-GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK-LL----- 92

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 151
           ++ G +        +   +G T          + +++
Sbjct: 93  LSKGADKT------VKGPDGLTAFEATDNQAIKALLQ 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.9 bits (144), Expect = 1e-11
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 24/141 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A R   H  + ++L +  + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LL----- 54

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE---Q 169
           +  G +          D  G TPLH A RN H  VV++L++   D      +N  +   +
Sbjct: 55  LEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGR 102

Query: 170 TPLAIAIDSSLTDIACFIIDQ 190
           TPL +A  +   ++   +++ 
Sbjct: 103 TPLHLAARNGHLEVVKLLLEA 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           GNT L++A+   N   I + L  + + +   N   ++P   A   G   I++ +L +   
Sbjct: 39  GNTPLNIAVH-NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
             N             +  G   L  A    H + V++L++  R  + + N    T L  
Sbjct: 98  DLN-----------KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146

Query: 175 AI 176
           A+
Sbjct: 147 AV 148

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 145
             +    L  A +     +   IL          + +        D EGNTPL+ AV N 
Sbjct: 3   TYEVGALLEAANQRDTKKVKE-IL-----QDTTYQVD------EVDTEGNTPLNIAVHNN 50

Query: 146 HENVVRMLVKK--DRIPLGYINKA---EQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLP 200
              + + L+ +  D      IN       +P   A     T+I  +++      L+    
Sbjct: 51  DIEIAKALIDRGAD------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104

Query: 201 EELTLLHSAVMR 212
                L  A  +
Sbjct: 105 YGGNALIPAAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 31/115 (26%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLR-------KHNLKGETPLHIAARVGDP----- 102
           G   L  A   + H    ++L     L         +++  G T L  A  + +      
Sbjct: 106 GGNALIPAAE-KGHIDNVKLL-----LEDGREDIDFQNDF-GYTALIEAVGLREGNQLYQ 158

Query: 103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
            IV  +L     + NG +        I D+ G T +  A +  +  + ++L + +
Sbjct: 159 DIV-KLL-----MENGADQS------IKDNSGRTAMDYANQKGYTEISKILAQYN 201

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T L +A     H  I E+L +  + +  ++++G TPLH+AA  G   IV  +L     
Sbjct: 80  GMTPLRLAAL-FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE-VL----- 132

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
           + NG +          D  G T    ++ N +E++  +L K +
Sbjct: 133 LKNGADVN------AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.1 bits (142), Expect = 5e-11
 Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               L  A R         IL    + +   +  G TPLH+AA  G   IV  +L     
Sbjct: 14  LGKKLLEAAR-AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-VL----- 66

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QTP 171
           + NG +          D  G TPL  A    H  +V +L+K        +N  +    TP
Sbjct: 67  LKNGADVN------AVDHAGMTPLRLAALFGHLEIVEVLLKNG----ADVNANDMEGHTP 116

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L +A      +I   ++  
Sbjct: 117 LHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.0 bits (126), Expect = 8e-09
 Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 19/113 (16%)

Query: 81  LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHN 140
               H       L  AAR G    V  IL     + NG +          D  G TPLH 
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVR-IL-----MANGADVN------AEDASGWTPLHL 53

Query: 141 AVRNKHENVVRMLVKKDRIPLGYINKA---EQTPLAIAIDSSLTDIACFIIDQ 190
           A  N H  +V +L+K        +N       TPL +A      +I   ++  
Sbjct: 54  AAFNGHLEIVEVLLKNG----ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 19/139 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A R+ +     + L +  +     +  G TPLH A       +   IL     
Sbjct: 25  GETALHLAARY-SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ-IL----- 77

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTP 171
           I N         L     +G TPL  A R   E ++  L+         +N      ++ 
Sbjct: 78  IRNRATD-----LDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSA 128

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           L  A   +  D A  ++  
Sbjct: 129 LHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G + LH A    N+     +L +  +     N + ETPL +AAR G       +L     
Sbjct: 125 GKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK-VL----- 177

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           + +    +      ITD     P   A    H ++VR+L + 
Sbjct: 178 LDHFANRD------ITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.8 bits (128), Expect = 7e-09
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 67  NHKVIPEILRQQD-SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPES 125
           +   +      Q  SL  + +  GET LH+AAR          L     +    ++    
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA-KRL-----LEASADAN--- 52

Query: 126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIAC 185
              I D+ G TPLH AV    + V ++L++     L        TPL +A   ++  +  
Sbjct: 53  ---IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109

Query: 186 FIIDQ 190
            +I+ 
Sbjct: 110 DLINS 114

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN---KAEQTPLAIAIDSSLTDI 183
            TD  G T LH A R    +  + L++   D       N      +TPL  A+ +    +
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGV 73

Query: 184 ACFIIDQRPDSLDHRLPEELTLLHSAV 210
              +I  R   LD R+ +  T L  A 
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAA 100

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 42/169 (24%)

Query: 54  RGNTVLHMAIRFRNHKVIPEIL---------RQQDSLLRKHNLK----GETPLHIAARVG 100
           +G++ LH+AI  +      ++L         R      +KH       GE PL +AA   
Sbjct: 89  QGHSALHIAIE-KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 160
              +V+ +L       +         L  TD  GNT LH  V                  
Sbjct: 148 QWDVVTYLLENPHQPAS---------LEATDSLGNTVLHALVMIAD-------------- 184

Query: 161 LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA 209
               N  E + L I +   L  +   +        +    + LT L  A
Sbjct: 185 ----NSPENSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 25/184 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL-------RQQDSLLRKHNLKGETPLHIAA---RVGDPAI 104
               L   +     + +  +L       +            G+T L  A    + G  A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-------- 156
           +  +L  +   +   +    +       +G++ LH A+  +    V++LV+         
Sbjct: 62  IMPLLQ-IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 157 ----DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD--SLDHRLPEELTLLHSAV 210
                +   G      + PL++A  +   D+  ++++      SL+       T+LH+ V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 211 MRQN 214
           M  +
Sbjct: 181 MIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 24  ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSL-- 81
           +LL  +  G +  +R      Q    T    G   L +A        +   L +      
Sbjct: 107 KLL--VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPA 163

Query: 82  -LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR------ITDDEG 134
            L   +  G T LH    + D +  ++ L     + +G       L        I++ +G
Sbjct: 164 SLEATDSLGNTVLHALVMIADNSPENSALVI--HMYDGLLQMGARLCPTVQLEEISNHQG 221

Query: 135 NTPLHNAVRNKHENVVRMLVKKD 157
            TPL  A +     + R +++++
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQRE 244

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.9 bits (141), Expect = 7e-11
 Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 41/134 (30%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
            G     +  +   H           + +     + ETP   AAR  D   +        
Sbjct: 13  EGAMEYLIEWK-DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL-------- 60

Query: 114 AITNGTESEPESLLR-----ITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPL 161
                       LL        D+ G T L        +  VR+L +       +D    
Sbjct: 61  ----------SQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---- 106

Query: 162 GYINKAEQTPLAIA 175
               +   T L +A
Sbjct: 107 ---MRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.5 bits (127), Expect = 7e-09
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 28/110 (25%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKH----NLK----GETPLHIAARVGDPAIVS 106
           G T L             + +R    LL +     + +    G T LH+AA    P +V 
Sbjct: 76  GRTALLFVAG-LGSD---KCVR----LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 107 TILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             L     +  G + E      + D+ G T L  A            ++ 
Sbjct: 128 -AL-----VELGADIE------VEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 25/133 (18%)

Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
           +   +G     I  + G           VP+     +            E  TP   A R
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSW------VPSSYIAAD---------VVSEYETPWWTAAR 53

Query: 144 NKHENVVRMLVKKDRIPLGYIN---KAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLP 200
              E  +  L++        ++   +  +T L              + +   D LDHR  
Sbjct: 54  KADEQALSQLLED-----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDM 107

Query: 201 EE-LTLLHSAVMR 212
              LT LH A   
Sbjct: 108 RGGLTALHMAAGY 120

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.8 bits (136), Expect = 7e-11
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A R   H  + ++L +  + +   +  G TPLH+AAR G   +V  +L     
Sbjct: 2   GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LL----- 54

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           +  G +          D  G TPLH A RN H  VV++L++ 
Sbjct: 55  LEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 18/137 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI--LNYV 112
               +H A +  N   + +++ + + L      +G   L    R  D  ++  I  L  +
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSECL------QGFYMLRNLIRRNDEVLLDDIRFLLSI 303

Query: 113 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL 172
           P I     +           + N  L  A+R  ++    +L+    +    +   +    
Sbjct: 304 PGIKALAPTA------TIPGDANELLRLALRLGNQGACALLLSIPSV----LALTKANNY 353

Query: 173 AIAIDSSLTDIACFIID 189
            I       D+    ++
Sbjct: 354 YINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 15/126 (11%)

Query: 54  RGNTVLHMAIR---FRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN 110
           +   +  +A           +  +L   D +++    +      +AA  G   +++ +  
Sbjct: 91  KSEVICFVAAITGCSSALDTL-CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 111 YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG-YINKAEQ 169
             P               +   E       A  N H +V+  L +         I     
Sbjct: 150 LAPTEIMA----------MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199

Query: 170 TPLAIA 175
                A
Sbjct: 200 YAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 17/123 (13%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           R    L+ A   RN K       Q  S   K  +K E    +AA  G  + + T+   + 
Sbjct: 64  RQLLCLYYAHYNRNAK-------QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL- 115

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYINKAEQTPL 172
                     + ++++   E       A  N H +V+  L +      +  I        
Sbjct: 116 --------TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167

Query: 173 AIA 175
            +A
Sbjct: 168 RLA 170

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 24/152 (15%), Positives = 36/152 (23%), Gaps = 30/152 (19%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY--- 111
               L  A   R        L +  +     N  G  P+ +    G   +   +L +   
Sbjct: 12  SADWLATAAA-RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAE 69

Query: 112 VPAITNGTESEP-------------ESLLR------ITDDEGNTPLHNAVRNKHENVVRM 152
                  T + P               L R      + D  G  P+  A    H +V R 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

Query: 153 LVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
           L                    I      +DI 
Sbjct: 130 LRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 13/69 (18%)

Query: 88  KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 147
                L  AA  G    V   L     +  G            +  G  P+   +     
Sbjct: 11  PSADWLATAAARGRVEEV-RAL-----LEAGANPN------APNSYGRRPIQVMMMG-SA 57

Query: 148 NVVRMLVKK 156
            V  +L+  
Sbjct: 58  RVAELLLLH 66

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 9/51 (17%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YINKAEQTPLAIA 175
            + +     L  A        VR L++      G      N   + P+ + 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEA-----GANPNAPNSYGRRPIQVM 52

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 34/141 (24%), Positives = 49/141 (34%), Gaps = 23/141 (16%)

Query: 55  GNTVLHMAIRFRNHKVIPEIL-RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
            +  L  A +        + L   Q    R    +  TPLH AA     ++V   L    
Sbjct: 8   ADRQLLEAAK-AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-EYL---- 61

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG-YINKAE---Q 169
            + +G +          D  G  PLHNA    H  V  +LVK      G  +N A+    
Sbjct: 62  -LQHGADVH------AKDKGGLVPLHNACSYGHYEVAELLVKH-----GAVVNVADLWKF 109

Query: 170 TPLAIAIDSSLTDIACFIIDQ 190
           TPL  A      +I   ++  
Sbjct: 110 TPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 56.2 bits (137), Expect = 2e-10
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 25/142 (17%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           R +T LH A  + N   + E L Q  + +   +  G  PLH A   G   +   +L    
Sbjct: 41  RQSTPLHFAAGY-NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA-ELL---- 94

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYIN---KAE 168
            + +G          + D    TPLH A       + ++L++   D           +  
Sbjct: 95  -VKHGAVVN------VADLWKFTPLHEAAAKGKYEICKLLLQHGAD------PTKKNRDG 141

Query: 169 QTPLAIAIDSSLTDIACFIIDQ 190
            TPL +  D    DI   +   
Sbjct: 142 NTPLDLVKDGDT-DIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 145
           N + +  L  AA+ GD   V  +                      +   +TPLH A    
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-----------IEGRQSTPLHFAAGYN 53

Query: 146 HENVVRMLVKKDRIPLG-YIN---KAEQTPLAIAIDSSLTDIACFIIDQ 190
             +VV  L++      G  ++   K    PL  A      ++A  ++  
Sbjct: 54  RVSVVEYLLQH-----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 62  AIRFRNHKVIPEILRQQDSLLRKHNL-----KGETPLHIAARVGDPAIVSTILNYVPAIT 116
           A++ R+   + +       L  K  L       ET LH+A R  D   +  +      + 
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVD---FLVQ 193

Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI 176
           N         L     +G+T LH      +   +++L++  +  +   N++ +TPL IA 
Sbjct: 194 NSGN------LDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAK 246

Query: 177 DSSLTDIACFII 188
                     + 
Sbjct: 247 RLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 49  STMSPRGNTVLHMAIR--FRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVS 106
           +       T LH+A+R   R    I + L Q    L K   KG T LH      +   + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 107 TILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
            +L    +I             I ++ G TPL  A R KHE+   +L +
Sbjct: 223 LLLRGKASIE------------IANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 53  PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
            +G+T LH      ++    ++L +  + +   N  GETPL IA R+        +   
Sbjct: 203 GKGSTALHYCCL-TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 24/125 (19%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY-- 111
             +  L  A   R        L +  +     N  G  P+ +    G   +   +L +  
Sbjct: 11  SSDAGLATAAA-RGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA 68

Query: 112 -VPAITNGTESEP-------------ESLLR------ITDDEGNTPLHNAVRNKHENVVR 151
                   T + P               L R      + D  G  P+  A    H ++ R
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

Query: 152 MLVKK 156
            L   
Sbjct: 129 YLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 13/73 (17%)

Query: 84  KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
                 +  L  AA  G    V   L     +  G +          +  G  P+   + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETV-RQL-----LEAGADPN------ALNRFGRRPIQVMMM 54

Query: 144 NKHENVVRMLVKK 156
                V  +L+  
Sbjct: 55  G-SAQVAELLLLH 66

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 11/52 (21%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE---QTPLAIA 175
           +     +  L  A        VR L++   D       N      + P+ + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVM 52

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 23/126 (18%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLL-RKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
             T+LH A    N   + +    + +++ +       TPLH A R G  ++V   L    
Sbjct: 42  NVTLLHWAAI-NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV-QL---- 95

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG-YINKA---EQ 169
            +  G +        + D EG + +H A +  H ++V  L+ K     G  ++       
Sbjct: 96  -MKYGADPS------LIDGEGCSCIHLAAQFGHTSIVAYLIAK-----GQDVDMMDQNGM 143

Query: 170 TPLAIA 175
           TPL  A
Sbjct: 144 TPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 13/103 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQD-SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           G T L  A    +      +L   + S+         T LH A   G+  ++S +L    
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE--- 198

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
               G   +        + +G + L  A + K+  ++  L + 
Sbjct: 199 ---AGANVD------AQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 19/139 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               +  A ++         L +    +R+ + +  T LH AA      +V         
Sbjct: 9   STWDIVKATQY-GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK-YY----- 61

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE---QTP 171
           I+ G   +     ++  D  +TPLH A R  H ++V  L+K         +  +    + 
Sbjct: 62  ISKGAIVD-----QLGGDLNSTPLHWATRQGHLSMVVQLMKYG----ADPSLIDGEGCSC 112

Query: 172 LAIAIDSSLTDIACFIIDQ 190
           + +A     T I  ++I +
Sbjct: 113 IHLAAQFGHTSIVAYLIAK 131

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.7 bits (138), Expect = 4e-10
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 22/142 (15%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
             +T LH A R + H  +   L +  +     + +G + +H+AA+ G  +IV+  L    
Sbjct: 75  LNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA-YL---- 128

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHE-NVVRMLVKKDRIPLGYINKAE---- 168
            I  G + +      + D  G TPL  A    H  +  R+L+  +      +N  +    
Sbjct: 129 -IAKGQDVD------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFN----VSVNLGDKYHK 177

Query: 169 QTPLAIAIDSSLTDIACFIIDQ 190
            T L  A+ +  T +   +++ 
Sbjct: 178 NTALHWAVLAGNTTVISLLLEA 199

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY-INKA---EQTPLAIAIDSSLTDIAC 185
            DD     +  A +       R LV+      GY + +      T L  A  ++  D+  
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEA-----GYDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 186 FIIDQ 190
           + I +
Sbjct: 60  YYISK 64

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           GNT LH A +   H    + L  + + +   +  G TPLH+AA+ G   IV  +L     
Sbjct: 9   GNTPLHNAAK-NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK-LL----- 61

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           +  G +            +GNTP H A +N H  +V++L  K
Sbjct: 62  LAKGADVN------ARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 13/85 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           GNT LH+A +   H  I ++L  + + +   +  G TP H+A + G   IV  +L     
Sbjct: 42  GNTPLHLAAK-NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK-LL----- 94

Query: 115 ITNGTESEPESLLRITDDEGNTPLH 139
              G +              +   H
Sbjct: 95  DAKGADVN------ARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE---QTPLAIA 175
               +GNTPLHNA +N H   V+ L+ K  D      +N       TPL +A
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLA 49

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 17/104 (16%)

Query: 86  NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 145
                  L  AAR G    V  IL     + NG +          D  G+TPLH A RN 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVR-IL-----MANGADVA------AKDKNGSTPLHLAARNG 68

Query: 146 HENVVRMLVKK--DRIPLGYINKAEQTPLAIAIDSSLTDIACFI 187
           H  VV++L++   D   +   +K  +T   I+ID+   D+A  +
Sbjct: 69  HLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 24/139 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               L  A R         IL    + +   +  G TPL++A   G   IV  +L     
Sbjct: 14  LGKKLLEAAR-AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVL----- 66

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAE---Q 169
           + NG +          D  G TPLH A    H  +  +L+K   D      +N  +   +
Sbjct: 67  LKNGADVN------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD------VNAQDKFGK 114

Query: 170 TPLAIAIDSSLTDIACFII 188
           T   I+I +   D+A  + 
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 54.3 bits (132), Expect = 7e-10
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T L++A     H  I E+L +  + +   +  G TPLH+AA +G   I   +L     
Sbjct: 47  GLTPLYLATAH-GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE-VL----- 99

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
           + +G +          D  G T    ++ N +E++  +L K +
Sbjct: 100 LKHGADVN------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.5 bits (117), Expect = 8e-08
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 82  LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA 141
              H       L  AAR G    V  IL     + NG +          D+ G TPL+ A
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEV-RIL-----MANGADVN------AKDEYGLTPLYLA 54

Query: 142 VRNKHENVVRMLVKK--DRIPLGYIN---KAEQTPLAIAIDSSLTDIACFIIDQ 190
             + H  +V +L+K   D      +N       TPL +A      +IA  ++  
Sbjct: 55  TAHGHLEIVEVLLKNGAD------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 26/164 (15%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK-GETPLHIAARVGDPAIVSTILNYVP 113
           G T L              +L +  + L   +++ G T LH+AA    P +V   L    
Sbjct: 77  GRTALLFVAG-LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE-AL---- 130

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLGYINK 166
            +  G + E      + D+ G T L  A            ++       +  I +     
Sbjct: 131 -VELGADIE------VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 183

Query: 167 AEQTPLA-IAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSA 209
            E   +  I           +++  +    D    E +  +H A
Sbjct: 184 FEYAEVDEIVEKRGKGKDVEYLVRWK----DGGDCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 22/133 (16%), Positives = 35/133 (26%), Gaps = 41/133 (30%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G     +  +   H           + +     + ETP   AAR  D   +         
Sbjct: 15  GAMEYLIEWK-DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL--------- 61

Query: 115 ITNGTESEPESLLR-----ITDDEGNTPLHNAVRNKHENVVRMLVK-------KDRIPLG 162
                      LL        D+ G T L        +  VR+L +       +D     
Sbjct: 62  ---------SQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD----- 107

Query: 163 YINKAEQTPLAIA 175
              +   T L +A
Sbjct: 108 --MRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 27/134 (20%), Positives = 38/134 (28%), Gaps = 23/134 (17%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI---TDDEGNTPLHNAVRNK 145
           GE    I +R          + Y+    +G          I      E  TP   A R  
Sbjct: 1   GEVNKIIGSRTAG----EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKA 56

Query: 146 HENVVRMLVK------KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL 199
            E  +  L++       D        +  +T L              + +   D LDHR 
Sbjct: 57  DEQALSQLLEDRDVDAVD--------ENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRD 107

Query: 200 PE-ELTLLHSAVMR 212
               LT LH A   
Sbjct: 108 MRGGLTALHMAAGY 121

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 88  KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 147
             E  LH+A +V + A +  ++++   I NG        L     +GNT LH A      
Sbjct: 189 PEELVLHLAVKVANQASLP-LVDF--IIQNGGH------LDAKAADGNTALHYAALYNQP 239

Query: 148 NVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL 199
           + +++L+K  R  +G +N+A +T L IA      +    +   +  +    L
Sbjct: 240 DCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 290

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 55  GNTVLHMAIRFRNHKVIP--EILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV 112
              VLH+A++  N   +P  + + Q    L      G T LH AA    P  +  +L   
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 113 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
                       +L+   ++ G T L  A +  H+    +L +
Sbjct: 250 ------------ALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 23/137 (16%)

Query: 83  RKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAV 142
           R+  L     L  AA  G+  +V   +  +   +              ++EG T LHNA+
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS------------QPNEEGITALHNAI 62

Query: 143 RNKHENVVRMLVKK--DRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQRPDSLDH 197
              + ++V  L+    +      +N  +    TPL  A   + T I   ++         
Sbjct: 63  CGANYSIVDFLITAGAN------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 198 RLPEELTLLHSAVMRQN 214
            L +  T        + 
Sbjct: 117 TLSDGATAFEKCDPYRE 133

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH AI    +  I + L    + +   +  G TPLH AA   D  I    L     
Sbjct: 54  GITALHNAI-CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC-MAL----- 106

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNK--HENVVRMLVKKDRIPLGYINKAEQTPL 172
           + +G       +   T  +G T        +  + +    L   ++  +G +N      L
Sbjct: 107 VQHGAA-----IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYAL 160

Query: 173 AIA 175
              
Sbjct: 161 WDY 163

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 22/119 (18%), Positives = 28/119 (23%), Gaps = 24/119 (20%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK-GETPLHIAARV--GDPAIVSTILN- 110
           G T LH A    N  VI   L Q  + +    L  G T          G     + + + 
Sbjct: 87  GWTPLHCAAS-CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 111 -----------YVPAITNGTESEPESLLRI--------TDDEGNTPLHNAVRNKHENVV 150
                               E   E   R          D    T    A  +  E  V
Sbjct: 146 EQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.4 bits (120), Expect = 9e-08
 Identities = 29/166 (17%), Positives = 47/166 (28%), Gaps = 47/166 (28%)

Query: 54  RGNTVLHMAIRFRN---HKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN 110
            G + L  A++  N         +L      L   +    T LH           S    
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222

Query: 111 Y----------------VPAITNGTESEP---------------------ESLLRITDDE 133
           Y                + + TN  ES+P                      ++L   D  
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 134 GNTPLHNAVRNKHENVVRMLVKKD---RIPLGYINKAEQTPLAIAI 176
           G+T L+ A R  + ++V  L+       I     NK+   P+    
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 52  SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
             +    L   + F   + +P  L    S                +            + 
Sbjct: 60  KMKLEAFLQRLL-FPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS----------FDSL 108

Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG----YINKA 167
           +  + +   +   +L    D+ GNTPLH      +  +V+ LVK      G    Y +  
Sbjct: 109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-----GSNRLYGDNM 163

Query: 168 EQTPLAIAI 176
            ++ L  A+
Sbjct: 164 GESCLVKAV 172

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 16/129 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDS-LLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
            N            + + +        L    +  G TPLH    + +  +V   L    
Sbjct: 96  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK-HL---- 150

Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKH---ENVVRMLVKKDRIPLGYINKAEQT 170
            + +G+           D+ G + L  AV++ +         L+      L   +   +T
Sbjct: 151 -VKHGSN------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRT 203

Query: 171 PLAIAIDSS 179
            L   I +S
Sbjct: 204 ILHHIIITS 212

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 52  SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
                T L  A    N  +  E L Q  + + + +  G  PLH A  +G   +    L  
Sbjct: 232 GQDNATPLIQATA-ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP 171
                          L   D EG  PL  A+   + ++V +L       +     A+   
Sbjct: 291 GAD------------LGARDSEGRDPLTIAMETANADIVTLLRLA---KMREAEAAQGQA 335

Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL 205
                     D +    D  P+ L  R  +  TL
Sbjct: 336 GDETYLDIFRDFSLMASDD-PEKLSRRSHDLHTL 368

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 55  GNTVLHMAIR--FRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV 112
              VLH+A++   +    + + + Q    L      G T LH AA    P  +  +L   
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230

Query: 113 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
             +               ++ G T L  A +  H+    +L +
Sbjct: 231 ALVG------------TVNEAGETALDIARKKHHKECEELLEQ 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 108/302 (35%)

Query: 1   MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQI---RPIAGRMQNIFSTMSPRGNT 57
           M+   T+ ++P+M   +       L N  +   ++ +   +P   +++     + P  N 
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNV 153

Query: 58  VLH-MA---------------------------IRFRNHKVIPEILRQQDSL-------- 81
           ++  +                            +  +N      +L     L        
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 82  -----------LRKHNLKGETPLHIAAR-----------VGDPAIV-------------- 105
                      LR H+++ E    + ++           V +                  
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 106 -STILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI 164
              + +++ A T    S     + +T DE  + L   +            +   +P    
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----------CRPQDLP---- 319

Query: 165 NKAEQT-PLAIAIDSSLTDIACFIIDQ--RPDSLDHRLPEELT--------LLHSAVMRQ 213
            +   T P  ++I      IA  I D     D+  H   ++LT        +L  A  R+
Sbjct: 320 REVLTTNPRRLSI------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 214 NY 215
            +
Sbjct: 374 MF 375

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-38  Score=230.45  Aligned_cols=181  Identities=21%  Similarity=0.231  Sum_probs=169.9

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ..+.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++.....++.++..|.||||+|+.
T Consensus        55 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           55 RTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            34556799999999999999999999999 89999999999999999999999999976666888999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS  178 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  178 (215)
                      .++.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..
T Consensus       134 ~~~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADV------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAARE  200 (253)
T ss_dssp             HTCSSHHHHHHHTTCCT------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHC
Confidence            99999999999999874            467889999999999999999999999999987 78999999999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          179 SLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       179 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++.+++++|+++| ++++.++..|.||+++|+.+|+
T Consensus       201 ~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          201 GSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCC
Confidence            9999999999999 9999999999999999999986

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.4e-38  Score=224.45  Aligned_cols=181  Identities=21%  Similarity=0.231  Sum_probs=169.5

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ..+.+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.....++.++..|.||||+|+.
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            44556799999999999999999999998 88999999999999999999999999976666888899999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS  178 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  178 (215)
                      .++.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..
T Consensus       102 ~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADV------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAARE  168 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             hCcHHHHHHHHHcCCCC------------cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHc
Confidence            99999999999999774            367889999999999999999999999999987 78899999999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          179 SLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       179 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++.+++++|+++| ++++.++..|.||+++|+.+|+
T Consensus       169 ~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          169 GSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcc
Confidence            9999999999999 9999999999999999999886

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2e-38  Score=214.99  Aligned_cols=160  Identities=23%  Similarity=0.417  Sum_probs=146.5

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      ..+|+.|++.|+.++++.|+++|+++ +.+|..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..|+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCC
Confidence            34699999999999999999999999 999999999999999999999999999 5678899999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .+++++|+++|+++            +.+|.+|+||||+|+..|+.+++++|+++|+++ +.++..|+|||++|++.|+.
T Consensus        83 ~~~v~~Ll~~gadv------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           83 KEVVKLLISKGADV------------NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             HHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHCcCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCH
Confidence            99999999999884            468899999999999999999999999999997 78999999999999999999


Q ss_pred             HHHHHHHHhCCCCccc
Q 037245          182 DIACFIIDQRPDSLDH  197 (215)
Q Consensus       182 ~~~~~Ll~~g~~~~~~  197 (215)
                      +++++|+++| +++..
T Consensus       150 ~iv~~Ll~~G-A~ie~  164 (169)
T 4gpm_A          150 EVVKLLEKQG-GWLEH  164 (169)
T ss_dssp             HHHHHHHTC-------
T ss_pred             HHHHHHHHCC-CCcCC
Confidence            9999999999 77654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.4e-38  Score=229.19  Aligned_cols=191  Identities=21%  Similarity=0.269  Sum_probs=167.8

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccC---cccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQN---IFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      .+.+|||+|+..|+.+++++|++++.+   + +..+..|.||||+|+..|+.+++++|+ +.+++++.++..|.||||+|
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A   85 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHLA   85 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-cccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHH
Confidence            344569999999999999999999887   5 788999999999999999999999999 56788899999999999999


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCC-----------------------------------CccccccccCCCCCcHHHHH
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTES-----------------------------------EPESLLRITDDEGNTPLHNA  141 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~a  141 (215)
                      +..|+.+++++|++++++.......                                   .....++..+..|.||||+|
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  165 (282)
T 1oy3_D           86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (282)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence            9999999999999988763221110                                   12234667888999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccc-cCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          142 VRNKHENVVRMLVKKDRIPLGYIN-KAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       142 ~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +..|+.+++++|+++|+++ +..+ ..|.||||+|+..++.+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       166 ~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          166 VIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSC
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCC
Confidence            9999999999999999987 5565 45999999999999999999999999 9999999999999999999886

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.6e-37  Score=221.57  Aligned_cols=191  Identities=18%  Similarity=0.160  Sum_probs=164.6

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhc-ccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccc----cccCCCCCCHHHH
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLL----RKHNLKGETPLHI   95 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~----~~~~~~g~t~l~~   95 (215)
                      +.+|||.|+..|+.+++++|+++ +.++ +..+..|.||||+|+..|+.+++++|++.+....    +.++..|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            34579999999999999999998 8888 8999999999999999999999999996544322    5567799999999


Q ss_pred             HHHhCCHHHHHHHHhhcccccCCCCCC-ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHH
Q 037245           96 AARVGDPAIVSTILNYVPAITNGTESE-PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI  174 (215)
Q Consensus        96 a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  174 (215)
                      |+..|+.+++++|+++|+++....... .....+..+..|.||||+|+..++.+++++|+++|+++ +.+|..|.||||+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~  160 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHI  160 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence            999999999999999998865432211 11122334568999999999999999999999999987 7899999999999


Q ss_pred             HHHcCCHHHH----HHHHHhCCCCc------cccCccCccHHHHHHHhCC
Q 037245          175 AIDSSLTDIA----CFIIDQRPDSL------DHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       175 a~~~~~~~~~----~~Ll~~g~~~~------~~~~~~g~t~l~~A~~~~~  214 (215)
                      |+..++.+++    ++|+++| ++.      +.++..|.||||+|+.+|+
T Consensus       161 A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          161 LILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            9999999988    9999999 666      6899999999999999986

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.9e-37  Score=219.56  Aligned_cols=177  Identities=19%  Similarity=0.186  Sum_probs=112.2

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcc--cCcccc-cCCCCchHHHHHHHcCCcchHHHHHHhc-cccccccCCCCCCHHHHHH
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRM--QNIFST-MSPRGNTVLHMAIRFRNHKVIPEILRQQ-DSLLRKHNLKGETPLHIAA   97 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~~~~~g~t~l~~a~   97 (215)
                      .+|||+|+..|+.+++++|++++  .++ +. .+..|.||||+|+..|+.+++++|++.+ ..+++.++..|.||||+|+
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~  115 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV  115 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTTCCG-GGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHH
Confidence            34466666666666666666666  444 33 5566666666666666666666666322 1455556666666666666


Q ss_pred             HhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH
Q 037245           98 RVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAID  177 (215)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~  177 (215)
                      ..++.+++++|+++|+++            +..+..|.||||+|+..++.+++++|++.|....+..+..|+||||+|+.
T Consensus       116 ~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~  183 (228)
T 2dzn_A          116 GKKWFEVSQFLIENGASV------------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  183 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             HcCCHhHHHHHHHcCCCc------------cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH
Confidence            666666666666666552            34566677777777777777777777776622235666667777777777


Q ss_pred             cCCHHHHHHHH-HhCCCCccccCccCccHHHHHHHh
Q 037245          178 SSLTDIACFII-DQRPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       178 ~~~~~~~~~Ll-~~g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      .++.+++++|+ ++| ++++.+|..|.||+++|+..
T Consensus       184 ~~~~~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          184 EGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             TTCHHHHHHHHHHHC-CCSCCBCTTSCBGGGGCSST
T ss_pred             cCCHHHHHHHHHhcC-CCCCccCCCCCcHHHHHHHH
Confidence            77777777777 566 66777777777777766543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.4e-38  Score=222.79  Aligned_cols=177  Identities=21%  Similarity=0.197  Sum_probs=155.9

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..+
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            445699999999999999999998888 888888999999999999999999888 556777888888999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +.++..|.||||+|+..++
T Consensus       118 ~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          118 RHEIAVMLLEGGANP------------DAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             CHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCC
Confidence            999999999888764            357888999999999999999999999999887 7788899999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          181 TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       181 ~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      .+++++|+++| ++++.++..|.||+++|+..+
T Consensus       185 ~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  216 (231)
T 3aji_A          185 VEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGL  216 (231)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHH
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhH
Confidence            99999999999 999999999999999997655

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.2e-37  Score=219.11  Aligned_cols=186  Identities=20%  Similarity=0.218  Sum_probs=112.3

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA  103 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  103 (215)
                      |||.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+..++.++..|.||||+|+..|+.+
T Consensus        14 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~   91 (237)
T 3b7b_A           14 PLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYE   91 (237)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            355555555555555555555555 555555555555555555555555555 334444555555555555555555555


Q ss_pred             HHHHHHhhc-ccccCCCCCC---------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCc
Q 037245          104 IVSTILNYV-PAITNGTESE---------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL  161 (215)
Q Consensus       104 ~~~~Ll~~~-~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  161 (215)
                      ++++|++++ .++......+                     .+..++..+..|.||||+|+..++.+++++|+++|+++ 
T Consensus        92 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-  170 (237)
T 3b7b_A           92 VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-  170 (237)
T ss_dssp             HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-
T ss_pred             HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-
Confidence            555555554 2211110000                     11123456667777777777777777777777777765 


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          162 GYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       162 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      +..+..|.||||+|+..++.+++++|+++| ++++.++..|.||||+|+.+|
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          171 HAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTC
T ss_pred             CCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHH
Confidence            566777777777777777777777777777 777777777777777777665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-37  Score=221.67  Aligned_cols=166  Identities=20%  Similarity=0.214  Sum_probs=126.4

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.....++.++..|.||||+|+..++
T Consensus        45 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  123 (237)
T 3b7b_A           45 RTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH  123 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Confidence            34577777777777777777777776 66677777777777777777777777755446666666677777777777777


Q ss_pred             HHHHHHHHhhcccccCCCCCC---------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 037245          102 PAIVSTILNYVPAITNGTESE---------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  160 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  160 (215)
                      .+++++|+++|+++......+                     .+..++..+..|.||||+|+..++.+++++|+++|+++
T Consensus       124 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            777777777776654433222                     33445678899999999999999999999999999987


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 037245          161 LGYINKAEQTPLAIAIDSSLTDIACFIID  189 (215)
Q Consensus       161 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  189 (215)
                       +.++..|.|||++|+..++...+..|++
T Consensus       204 -~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          204 -TLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             -TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             -CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             7899999999999999999877766654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=230.45  Aligned_cols=177  Identities=20%  Similarity=0.239  Sum_probs=147.2

Q ss_pred             ccHHHHHHHHcCCh-HHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           21 MDHELLNVLRRGDE-HQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        21 ~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      +.+||+.|+..+.. .+++.|+++|.++ +..|..|.||||+|+..|+.+++++|+ ..+++++.++..|.||++.|+..
T Consensus        52 ~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~~a~~~~~~~~g~t~l~~a~~~  129 (269)
T 4b93_B           52 FCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQ  129 (269)
T ss_dssp             -----------------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHH-HTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHH-hcCCCcCccCCCCCCcccccccc
Confidence            34569999987765 4789999999999 999999999999999999999999999 56778889999999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcC
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS  179 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~  179 (215)
                      ++.+++++|+++|+++            +..|..|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|
T Consensus       130 ~~~~~~~~Ll~~g~~~------------n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          130 GHFQVVKCLLDSNAKP------------NKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             TCHHHHHHHHHTTCCS------------CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTT
T ss_pred             ChHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcC
Confidence            9999999999999874            468899999999999999999999999999987 789999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          180 LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       180 ~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      +.+++++|+++| ++++.+|..|.||||+|++++
T Consensus       197 ~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          197 HVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             CHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred             CHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999 999999999999999998765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.6e-38  Score=225.49  Aligned_cols=186  Identities=19%  Similarity=0.206  Sum_probs=141.0

Q ss_pred             CCcchhhccHHHHHHHHcC-------------ChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccc
Q 037245           14 DQELPATMDHELLNVLRRG-------------DEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS   80 (215)
Q Consensus        14 ~~~~~~~~~~~l~~a~~~~-------------~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~   80 (215)
                      +..+.. +.+|||+|+..|             +.+++++|+++++++.+..+..|.||||+|+..|+.+++++|+ +.+.
T Consensus         4 n~~d~~-g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~   81 (253)
T 1yyh_A            4 NVRGPD-GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASA   81 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTC
T ss_pred             CCCCCC-CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCC
Confidence            334444 456699999977             8999999999999985566899999999999999999999999 5678


Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 037245           81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  160 (215)
Q Consensus        81 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  160 (215)
                      +++.++..|.||||+|+..|+.+++++|+++++..           ++..+..|.||||+|+..++.+++++|++.|+++
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-----------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV  150 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC-----------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence            88999999999999999999999999999998621           3467889999999999999999999999999987


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          161 LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       161 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                       +..+..|.||||+|+..++.+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       151 -~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          151 -NAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             -TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             -CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCC
Confidence             788999999999999999999999999999 9999999999999999999886

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.8e-37  Score=213.13  Aligned_cols=179  Identities=17%  Similarity=0.248  Sum_probs=163.6

Q ss_pred             cHHHHHHHHcCChHHHHHHHhccc-CcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQ-NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      .++|+.|+..|+.+.++.++.++. ++ +..+..|.||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+..|
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALI-DRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            346999999999999999999988 66 889999999999999999999999999 567888999999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|++.+..           .++..+..|.||||+|+..++.+++++|++++....+..+..|.||||+|+..++
T Consensus        84 ~~~~~~~Ll~~~~~-----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           84 RTEILAYMLKHATP-----------DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             CHHHHHHHHHHSCC-----------CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred             CHHHHHHHHhccCc-----------ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence            99999999965532           2446788999999999999999999999999944458899999999999999988


Q ss_pred             -----HHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          181 -----TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       181 -----~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                           .+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       153 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          153 GNQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             CSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             chhhHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCC
Confidence                 99999999999 9999999999999999999886

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.6e-37  Score=217.31  Aligned_cols=178  Identities=20%  Similarity=0.248  Sum_probs=166.3

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      +++|+.|+..|+.+.++.++..++...+..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|+
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH-HhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            446999999999999999999987766888999999999999999999999999 5577888999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.
T Consensus        86 ~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A           86 DEIVKALLVKGAHV------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             HHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCH
Confidence            99999999999774            367889999999999999999999999999987 78899999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          182 DIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       182 ~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +++++|+++| ++++.++..|.||||+|+..|+
T Consensus       153 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          153 KMVHILLFYK-ASTNIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHhcC-CCccccCCCCCCHHHHHHHCCC
Confidence            9999999999 9999999999999999999886

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=7.7e-37  Score=221.09  Aligned_cols=190  Identities=17%  Similarity=0.114  Sum_probs=158.2

Q ss_pred             ccHHHHHHHHcCChH----HHHHHHhcccCcccc----cCCCCchHHHHHHHc---CCcchHHHHHHhcccccc------
Q 037245           21 MDHELLNVLRRGDEH----QIRPIAGRMQNIFST----MSPRGNTVLHMAIRF---RNHKVIPEILRQQDSLLR------   83 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~~~------   83 (215)
                      +.++||.|+..|+.+    ++++|++++.++ +.    .+..|.||||+|+..   |+.+++++|++. +..++      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhc
Confidence            456899999999997    567777789998 76    899999999999999   999999999954 44433      


Q ss_pred             -----ccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC-ccccccccCCCCCcHHHHHHhcCCHHHHHHHHH--
Q 037245           84 -----KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE-PESLLRITDDEGNTPLHNAVRNKHENVVRMLVK--  155 (215)
Q Consensus        84 -----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~--  155 (215)
                           .++..|.||||+|+..|+.+++++|+++|+++....... .....+..+..|.||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                 234679999999999999999999999998854321100 000011112239999999999999999999999  


Q ss_pred             -cCCCCccccccCCCcHHHHHHH--cCCHH-------HHHHHHHhCCCCc-------cccCccCccHHHHHHHhCC
Q 037245          156 -KDRIPLGYINKAEQTPLAIAID--SSLTD-------IACFIIDQRPDSL-------DHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 -~~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~~-------~~~~~~g~t~l~~A~~~~~  214 (215)
                       +|+++ +.++..|+||||+|+.  .++.+       ++++|+++| +++       +.+|..|.||||+|+..|+
T Consensus       160 ~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          160 HQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             SCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             ccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCC
Confidence             88887 7899999999999999  78888       999999999 888       8999999999999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=220.69  Aligned_cols=186  Identities=15%  Similarity=0.157  Sum_probs=129.8

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      .+.+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus        58 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~~A~~~  135 (285)
T 3d9h_A           58 SDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVS  135 (285)
T ss_dssp             CSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHc
Confidence            3445699999999999999999999998 899999999999999999999999999 56788889999999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCC--------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 037245          100 GDPAIVSTILNYVPAITNGTESE--------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  159 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  159 (215)
                      |+.+++++|+++|+++.......                    .+..++..+..|.||||+|+..++.+++++|++.|++
T Consensus       136 ~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  215 (285)
T 3d9h_A          136 GSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD  215 (285)
T ss_dssp             TCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC
Confidence            99999999999998764321111                    2222334444455555555555555555555555444


Q ss_pred             CccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          160 PLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       160 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      + + .+..|.||||+|+..++.+++++|+++| ++++.+|..|.|||++|+
T Consensus       216 ~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          216 V-N-QGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             T-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSC
T ss_pred             C-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHhc
Confidence            3 2 2444555555555555555555555555 555555555555555544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4e-36  Score=215.33  Aligned_cols=178  Identities=18%  Similarity=0.259  Sum_probs=88.8

Q ss_pred             HHHHHHHcCChHHHHHHHh----cccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           24 ELLNVLRRGDEHQIRPIAG----RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      |||.|+..|+.+++++|++    .+.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus        12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~   89 (241)
T 1k1a_A           12 PLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHLACEH   89 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHc
Confidence            4555555555555555554    34444 555555555555555555555555555 33444555555555555555555


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc-cCCCcHHHHHHHc
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN-KAEQTPLAIAIDS  178 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~  178 (215)
                      ++.+++++|+++++....        .++..+..|.||||+|+..++.+++++|++.|+++ +..+ ..|.||||+|+..
T Consensus        90 ~~~~~~~~Ll~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           90 RSPTCLRALLDSAAPGTL--------DLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             TCHHHHHHHHHHSCTTSC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCccc--------cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHc
Confidence            555555555555542100        12233444444444444444444444444444443 2233 3444444444444


Q ss_pred             CCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          179 SLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       179 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      ++.+++++|+++| ++++.++..|.||||+|+..|
T Consensus       161 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          161 NSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             TCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHT
T ss_pred             CCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            4444444444444 444444444444444444444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.5e-37  Score=219.41  Aligned_cols=187  Identities=19%  Similarity=0.169  Sum_probs=167.9

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc---ccccccCCC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD---SLLRKHNLK   88 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~---~~~~~~~~~   88 (215)
                      .++..+.. +.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++...   ..++.++..
T Consensus        38 ~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  115 (241)
T 1k1a_A           38 ELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  115 (241)
T ss_dssp             CSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCccccc-CCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence            33444434 445699999999999999999999998 8889999999999999999999999996543   267788899


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccC
Q 037245           89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA  167 (215)
Q Consensus        89 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  167 (215)
                      |.||||+|+..++.+++++|+++|+++.            ..+ ..|.||||+|+..++.+++++|+++|+++ +..+..
T Consensus       116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  182 (241)
T 1k1a_A          116 GLTALHVAVNTECQETVQLLLERGADID------------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYS  182 (241)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcc------------cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9999999999999999999999998754            445 78999999999999999999999999987 788999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          168 EQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       168 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |.||||+|+..++.+++++|+++| ++++.++..|.||+++|+.+|+
T Consensus       183 g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          183 GSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCc
Confidence            999999999999999999999999 9999999999999999987764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.2e-37  Score=231.47  Aligned_cols=180  Identities=18%  Similarity=0.218  Sum_probs=142.7

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccc---------------
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK---------------   84 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~---------------   84 (215)
                      .+.++||.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++.+. .++.               
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~g~t~L~~A~~~g~   96 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGE-VHSLWHGQKPIHLAVMANK   96 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC-CCCCBTTBCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CccccCCCCHHHHHHHcCC
Confidence            3445699999999999999999998888 8888888999999999888888888885432 2221               


Q ss_pred             -------------------------------------cCCCCCCHHHHHHHhC--CHHHHHHHHhhcccccCCCCCCccc
Q 037245           85 -------------------------------------HNLKGETPLHIAARVG--DPAIVSTILNYVPAITNGTESEPES  125 (215)
Q Consensus        85 -------------------------------------~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~  125 (215)
                                                           ++..|.||||+|+..|  +.+++++|+++|++           
T Consensus        97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-----------  165 (364)
T 3ljn_A           97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-----------  165 (364)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-----------
T ss_pred             HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-----------
Confidence                                                 4445566666666666  66666666666555           


Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC----ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCcc
Q 037245          126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP----LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPE  201 (215)
Q Consensus       126 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  201 (215)
                       ++..+..|.||||+|+..|+.+++++|+++|++.    .+..+..|.||||+|+..|+.+++++|+++| ++++.++..
T Consensus       166 -~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~  243 (364)
T 3ljn_A          166 -PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNE  243 (364)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTT
T ss_pred             -CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCC
Confidence             4467888899999999999999999999888772    2678888999999999999999999999998 889999999


Q ss_pred             CccHHHHHHHhCC
Q 037245          202 ELTLLHSAVMRQN  214 (215)
Q Consensus       202 g~t~l~~A~~~~~  214 (215)
                      |.||||+|+..|+
T Consensus       244 g~tpL~~A~~~g~  256 (364)
T 3ljn_A          244 HTVPLYLSVRAAM  256 (364)
T ss_dssp             SCCHHHHHHHTCC
T ss_pred             CCCHHHHHHHhCh
Confidence            9999999988875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.7e-37  Score=216.84  Aligned_cols=182  Identities=19%  Similarity=0.249  Sum_probs=164.7

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhc-cccccc-cCCCCCCHHHHHHHh
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQ-DSLLRK-HNLKGETPLHIAARV   99 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~-~~~~g~t~l~~a~~~   99 (215)
                      .+|||.|+..|+.+++++|+++++++.+..+..|.||||+|+..|+.+++++|++.+ ...++. .+..|.||||+|+..
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            457999999999999999999999885668999999999999999999999999654 144444 788999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcC
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS  179 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~  179 (215)
                      |+.+++++|+++|+...          ++..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..+
T Consensus        83 ~~~~~~~~Ll~~g~~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  151 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPD----------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVG  151 (228)
T ss_dssp             CCHHHHHHHHSSSSCCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCcc----------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcC
Confidence            99999999999983211          3467889999999999999999999999999987 788999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          180 LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       180 ~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +.+++++|+++|+++++.++..|.||||+|+..|+
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~  186 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  186 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC
Confidence            99999999999989999999999999999999886

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1e-36  Score=223.08  Aligned_cols=178  Identities=22%  Similarity=0.248  Sum_probs=150.1

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc---------------------
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD---------------------   79 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~---------------------   79 (215)
                      +.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++...                     
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           45 GQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            445699999999999999999999999 8999999999999999999999999995331                     


Q ss_pred             -------------------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC-CC
Q 037245           80 -------------------------SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD-DE  133 (215)
Q Consensus        80 -------------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~  133 (215)
                                               ..++.++..|.||||+|+..|+.+++++|+++|+++.            ..+ ..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~~~  191 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN------------KPEPTC  191 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT------------CCCTTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC------------CCCCCC
Confidence                                     2366788899999999999999999999999998854            445 45


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      |+||||+|+..++.+++++|+++|+++ +.++..|.||||+|+..++.+++++|+++| ++++.++..|.|||++|....
T Consensus       192 g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          192 GRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence            999999999999999999999999997 789999999999999999999999999999 999999999999999997654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1e-36  Score=225.06  Aligned_cols=190  Identities=17%  Similarity=0.159  Sum_probs=167.5

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ..+.++|+.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+++++.++..|.||||+|+.
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHH
Confidence            34457899999999999999999999998 899999999999999999999999999 5678899999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCcccc------------------------------------------------cccc
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESL------------------------------------------------LRIT  130 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~------------------------------------------------~~~~  130 (215)
                      .|+.+++++|+++|+++......+...+                                                ....
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            9999999999999988755433331110                                                0123


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       131 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      +..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCC
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence            467999999999999999999999999887 789999999999999999999999999999 999999999999999986


Q ss_pred             Hh
Q 037245          211 MR  212 (215)
Q Consensus       211 ~~  212 (215)
                      +.
T Consensus       274 ~~  275 (299)
T 1s70_B          274 ED  275 (299)
T ss_dssp             SG
T ss_pred             HH
Confidence            53

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-35  Score=216.79  Aligned_cols=193  Identities=14%  Similarity=0.123  Sum_probs=160.6

Q ss_pred             hhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHH
Q 037245           18 PATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAA   97 (215)
Q Consensus        18 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~   97 (215)
                      ...+.+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|+ ..+..++.++..|.||||+|+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~  113 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVNECDFYGFTAFMEAA  113 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTTCCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCcccCCHHHHHH
Confidence            344556799999999999999999999998 888999999999999999999999999 567778888999999999999


Q ss_pred             HhCCHHHHHHHHhhcccccCCCCC----------C----------------------ccccccccCCCCCcHHHHHHhcC
Q 037245           98 RVGDPAIVSTILNYVPAITNGTES----------E----------------------PESLLRITDDEGNTPLHNAVRNK  145 (215)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~~~----------~----------------------~~~~~~~~~~~~~~~l~~a~~~~  145 (215)
                      ..|+.+++++|+++|+++......          +                      .+..++..+..|.||||+|+..+
T Consensus       114 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  193 (285)
T 1wdy_A          114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             HhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence            999999999999999876543211          1                      14455667778888888888888


Q ss_pred             C----HHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHH-hCCCCccccCccCccHHHHHHHhCC
Q 037245          146 H----ENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID-QRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       146 ~----~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +    .+++++|+++|+++ +.++..|.||||+|+..++.+++++|++ .| ++++.++..|.||||+|+.+|+
T Consensus       194 ~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g-~~~~~~~~~g~t~l~~A~~~~~  265 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEH-IEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccC-CCccccCCCCCcHHHHHHHcCc
Confidence            7    78888888888876 6778888888888888888888888888 56 8888888888888888888775

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.8e-36  Score=222.31  Aligned_cols=183  Identities=13%  Similarity=0.089  Sum_probs=163.4

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGET   91 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   91 (215)
                      .++..+..+. +|||+|+..|+.+++++|+++|+++ +..  .|.||||+|+..|+.+++++|+ ..+.+++.++..|.|
T Consensus        23 ~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t   97 (285)
T 3kea_A           23 DTFKADVHGH-SASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNT   97 (285)
T ss_dssp             TTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHH-HTTCCTTCCCTTSCC
T ss_pred             CCCccCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCc
Confidence            3444454444 5699999999999999999999998 665  4899999999999999999999 567888999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC-CcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCc
Q 037245           92 PLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG-NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT  170 (215)
Q Consensus        92 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t  170 (215)
                      |||+|+..|+.+++++|+++|+++            +..+..| .||||+|+..++.+++++|+++|+....  ...|.|
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~ga~~------------~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t  163 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKKNWRL------------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLS  163 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGG------------GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCC------------CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCcc
Confidence            999999999999999999999884            4678888 7999999999999999999999987622  128899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCccccCccCccH-HHHHHHhCC
Q 037245          171 PLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL-LHSAVMRQN  214 (215)
Q Consensus       171 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~-l~~A~~~~~  214 (215)
                      |||+|+..|+.+++++|+++| ++++.++..|.|| ||+|+.+|+
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             HHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCC
Confidence            999999999999999999999 9999999999998 999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.4e-38  Score=223.31  Aligned_cols=184  Identities=18%  Similarity=0.191  Sum_probs=149.1

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhccc----CcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQ----NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      +.+|||.|+..|+.+++++|++.+.    ++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|
T Consensus         8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A   85 (236)
T 1ikn_D            8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLA   85 (236)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHHH
T ss_pred             CCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHH
Confidence            4456889999998888888888765    45 777888889999999888999998888 56777888888888999999


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccccc-CCCcHHHHH
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINK-AEQTPLAIA  175 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~a  175 (215)
                      +..|+.+++++|++++++...      ...++..+..|.||||+|+..++.+++++|+++|+++ +..+. .|.||||+|
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           86 CEQGCLASVGVLTQSCTTPHL------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLA  158 (236)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHH
T ss_pred             HHcCCHHHHHHHHhcccchhH------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHH
Confidence            999999999999888765321      1224567778889999999888899999999888887 56666 888999999


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          176 IDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       176 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +..++.+++++|+++| ++++.++..|.|||++|+.+|+
T Consensus       159 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             HHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCc
Confidence            9988999999999888 8888888889999988887765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.3e-35  Score=221.26  Aligned_cols=101  Identities=17%  Similarity=0.105  Sum_probs=90.6

Q ss_pred             CCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHH
Q 037245           14 DQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPL   93 (215)
Q Consensus        14 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l   93 (215)
                      +..+.. +.+|||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.|||
T Consensus        52 ~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~~~~g~t~L  128 (351)
T 3utm_A           52 HASDGR-KSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPL  128 (351)
T ss_dssp             CCSSTT-CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHH
T ss_pred             ccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHH
Confidence            333433 445699999999999999999999998 999999999999999999999999999 56788889999999999


Q ss_pred             HHHHHhCCHHHHHHHHhhcccccC
Q 037245           94 HIAARVGDPAIVSTILNYVPAITN  117 (215)
Q Consensus        94 ~~a~~~~~~~~~~~Ll~~~~~~~~  117 (215)
                      |+|+..|+.+++++|+++|+++..
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~  152 (351)
T 3utm_A          129 HEAASKNRVEVCSLLLSHGADPTL  152 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcc
Confidence            999999999999999999988654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-35  Score=224.73  Aligned_cols=195  Identities=14%  Similarity=0.146  Sum_probs=170.4

Q ss_pred             CCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc--ccccccCCCCC
Q 037245           13 MDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD--SLLRKHNLKGE   90 (215)
Q Consensus        13 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~--~~~~~~~~~g~   90 (215)
                      ++..+.. +.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++...  ..++..+..|.
T Consensus       159 vn~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~  236 (373)
T 2fo1_E          159 VNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM  236 (373)
T ss_dssp             TTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             CcCCCCC-CCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCC
Confidence            3334433 445699999999999999999999999 8999999999999999999999999995432  67888999999


Q ss_pred             CHHHHHHHhC---CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccC
Q 037245           91 TPLHIAARVG---DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA  167 (215)
Q Consensus        91 t~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  167 (215)
                      ||||+|+..+   +.+++++|+++|+++....    ....+..+..|.||||+|+..|+.+++++|++++....+..+..
T Consensus       237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~  312 (373)
T 2fo1_E          237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDG----AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED  312 (373)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS----GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             CHHHHHHHhCCcchHHHHHHHHHCCCCccccc----ccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC
Confidence            9999999998   8999999999998865321    11233467799999999999999999999999874444889999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          168 EQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       168 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |.||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+.+|+
T Consensus       313 g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          313 GKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999 9999999999999999999886

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-36  Score=217.30  Aligned_cols=178  Identities=20%  Similarity=0.284  Sum_probs=138.2

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCc-------ccccCCCCchHHHHHHHcCCcc-hHHHHHHhccccccccCCCCCCHH
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNI-------FSTMSPRGNTVLHMAIRFRNHK-VIPEILRQQDSLLRKHNLKGETPL   93 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~-------~~~~~~~g~t~L~~A~~~~~~~-~~~~ll~~~~~~~~~~~~~g~t~l   93 (215)
                      .++|+.|+..|+.+++++|++.+.+.       .+..+..+.|||+.|+..+..+ ++++|+ ..+++++.+|.+|.|||
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCcCCCCCCHH
Confidence            35699999999999999999988653       2556778999999999877764 677777 67888999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHH
Q 037245           94 HIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA  173 (215)
Q Consensus        94 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  173 (215)
                      |+|+..|+.+++++|+++++++.            ..+..|.||++.|+..++.+++++|++.|+++ +.++..|+||||
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~  157 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAG------------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLI  157 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTT------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcC------------ccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            99999999999999999998744            67889999999999999999999999999987 789999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          174 IAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       174 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +|+..|+.+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       158 ~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          158 YACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             HHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCC
Confidence            999999999999999999 9999999999999999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=217.45  Aligned_cols=169  Identities=16%  Similarity=0.203  Sum_probs=113.5

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .+|||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+..++.. ..|.||||+|+..|+
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPE-SDLASPIHEAARRGH  169 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCS-CTTSCHHHHHHHHTC
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCC-CCCCCHHHHHHHcCC
Confidence            34577777777777777777777776 6666667777777777777666666663 33333322 235555555555555


Q ss_pred             HHHHHHHHhhcccccCCCCCC---------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 037245          102 PAIVSTILNYVPAITNGTESE---------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  160 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  160 (215)
                      .+++++|+++|+++......+                     .+..++ .+..|.||||+|+..++.+++++|+++|+++
T Consensus       170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  248 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADT  248 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            555555555555443322222                     122233 3778999999999999999999999999987


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccc
Q 037245          161 LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDH  197 (215)
Q Consensus       161 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  197 (215)
                       +.+|..|+|||++|+  ++.+++++|+++..+++..
T Consensus       249 -~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          249 -QAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             -TCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             -CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence             789999999999999  4579999999994366554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.3e-35  Score=202.35  Aligned_cols=169  Identities=21%  Similarity=0.191  Sum_probs=150.9

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .++||.|+..|+.+.++.|+++++...+..+..|.||||+|+..++.+++++|+ +.+.+++.++..|.||||+|+..++
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCC
Confidence            346999999999999999999998855888999999999999999999999999 5677888999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +.++..|.|||++|+..++.
T Consensus        82 ~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           82 TDIVGLLLERDVDI------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             HHHHHHHHTTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcH
Confidence            99999999999774            467889999999999999999999999999987 78999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCccCccH
Q 037245          182 DIACFIIDQRPDSLDHRLPEELTL  205 (215)
Q Consensus       182 ~~~~~Ll~~g~~~~~~~~~~g~t~  205 (215)
                      +++++|++++ +++..++..|.||
T Consensus       149 ~~~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          149 KVQQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHH-HHHSCC-------
T ss_pred             HHHHHHHHHH-HHHhcccCCCCCC
Confidence            9999999999 8888888888776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.6e-35  Score=225.32  Aligned_cols=174  Identities=21%  Similarity=0.222  Sum_probs=117.0

Q ss_pred             HHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHH
Q 037245           25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAI  104 (215)
Q Consensus        25 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  104 (215)
                      ||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..|+.++
T Consensus       216 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~  293 (437)
T 1n11_A          216 LHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGHVPV  293 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            44444444444444444444444 444444444444444444444444444 2333444444444455555555555555


Q ss_pred             HHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHH
Q 037245          105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA  184 (215)
Q Consensus       105 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  184 (215)
                      +++|+++|++            ++..+..|+||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++
T Consensus       294 ~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          294 ADVLIKHGVM------------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             HHHHHHHTCC------------TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCcc------------CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHCChHHHH
Confidence            5555544443            4567888999999999999999999999998887 77888899999999999999999


Q ss_pred             HHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          185 CFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       185 ~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++|+++| ++++.++..|.||+++|++.|+
T Consensus       361 ~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          361 TLLLKNG-ASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             HHHHHTT-CCSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHHHHCc-CCCCCCCCCCCCHHHHHHHcCc
Confidence            9999999 8899999999999999988774

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-35  Score=225.74  Aligned_cols=190  Identities=24%  Similarity=0.267  Sum_probs=126.0

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHCC
Confidence            445699999999999999999998888 888888999999999999999999998 456778888888999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCC---------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 037245          101 DPAIVSTILNYVPAITNGTESE---------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  159 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  159 (215)
                      +.+++++|+++|+++......+                     .+...+..+..|.||||+|+..|+.+++++|+++++.
T Consensus        92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  171 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  171 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            9999999999887754322111                     1111223344445555555555555555555555544


Q ss_pred             CccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          160 PLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       160 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      + +..+..|.||||+|+..++.+++++|+++| .+++.++..|.||||+|+..|+
T Consensus       172 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  224 (437)
T 1n11_A          172 P-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQ  224 (437)
T ss_dssp             T-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTTC
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCC
Confidence            4 344445555555555555555555555555 4455555555555555555443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-34  Score=210.71  Aligned_cols=191  Identities=18%  Similarity=0.230  Sum_probs=134.9

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCccccc-CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTM-SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      .+.++|+.|+..|+.+++++|+++++++ +.. +..|.||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLL-RHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHH
Confidence            3567899999999999999999999998 555 888999999999999999999999 5677888899999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCC---------------------cccccccc----------CCCCCcHHHHHHhcCCH
Q 037245           99 VGDPAIVSTILNYVPAITNGTESE---------------------PESLLRIT----------DDEGNTPLHNAVRNKHE  147 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~---------------------~~~~~~~~----------~~~~~~~l~~a~~~~~~  147 (215)
                      .|+.+++++|+++|+++......+                     .+..++..          +..|.||||.|+..++.
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence            999999999999998754322211                     11111111          34455555555555555


Q ss_pred             HHHHHHHHc-CCCCccccccCCCcHHHHHHHcCC----HHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          148 NVVRMLVKK-DRIPLGYINKAEQTPLAIAIDSSL----TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       148 ~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +++++|++. |.++ +..+..|.||||.|+..++    .+++++|+++| ++++.++..|.||||+|+.+|+
T Consensus       162 ~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          162 EVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCC
Confidence            555555554 4433 4455555555555555555    55555555555 5555555555666666655553

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.2e-35  Score=213.92  Aligned_cols=190  Identities=17%  Similarity=0.165  Sum_probs=154.9

Q ss_pred             cHHHHHHHHcCChHHHHHHHh----cccCcccccC----CCCchHHHHHH---HcCCcchHHHHHHhcc----------c
Q 037245           22 DHELLNVLRRGDEHQIRPIAG----RMQNIFSTMS----PRGNTVLHMAI---RFRNHKVIPEILRQQD----------S   80 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~~~~ll~~~~----------~   80 (215)
                      .++||.|++.|+.+.++.|++    .+.++ +..+    ..|.||||+|+   ..|+.+++++|++...          .
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            457999999999996555555    88887 5444    77999999999   6799999999996432          2


Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC--ccccccccCCCCCcHHHHHHhcCCHHHHHHHHH---
Q 037245           81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE--PESLLRITDDEGNTPLHNAVRNKHENVVRMLVK---  155 (215)
Q Consensus        81 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~---  155 (215)
                      ....++..|.||||+|+..|+.+++++|+++|+++.......  .....+..+..|.||||+|+..|+.+++++|++   
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            234455689999999999999999999999998865321100  000011112679999999999999999999999   


Q ss_pred             cCCCCccccccCCCcHHHHHHHcCC---------HHHHHHHHHhCCCCc-------cccCccCccHHHHHHHhCC
Q 037245          156 KDRIPLGYINKAEQTPLAIAIDSSL---------TDIACFIIDQRPDSL-------DHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 ~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~~g~t~l~~A~~~~~  214 (215)
                      .|+++ +.++..|+||||+|+..++         .+++++|+++| +++       +.++..|.||||+|+.+|+
T Consensus       165 ~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          165 KQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             CCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             cCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCC
Confidence            88887 7899999999999998887         79999999999 888       7899999999999999986

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.1e-34  Score=196.67  Aligned_cols=143  Identities=24%  Similarity=0.355  Sum_probs=135.8

Q ss_pred             hHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCc
Q 037245           57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNT  136 (215)
Q Consensus        57 t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (215)
                      +.|+.||..|+.++|++|+ +.+++++.+|..|.||||+|+..++.+++++|+++|+++            +.++..|+|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~------------~~~d~~g~T   72 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV------------NAKDSDGRT   72 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch------------hhhccCCCC
Confidence            4799999999999999999 567889999999999999999999999999999999884            468899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       137 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+.+|+
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           73 PLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCC
Confidence            999999999999999999999987 789999999999999999999999999999 9999999999999999999886

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-35  Score=223.36  Aligned_cols=191  Identities=17%  Similarity=0.174  Sum_probs=167.5

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHH--------hcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcccccc
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIA--------GRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR   83 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll--------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~   83 (215)
                      .++..+...+.+|||+|+..|+.+++++|+        +.|.++ +..|..|.||||+|+..|+.+++++|+ ..+++++
T Consensus       116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~  193 (373)
T 2fo1_E          116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPT  193 (373)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSC
T ss_pred             cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHH-HCCCCCc
Confidence            444455445667799999999998888776        788998 899999999999999999999999999 5678889


Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcC---CHHHHHHHHHcCCCC
Q 037245           84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK---HENVVRMLVKKDRIP  160 (215)
Q Consensus        84 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~  160 (215)
                      .++..|.||||+|+..|+.+++++|++++..         ...++..+..|.||||+|+..+   +.+++++|+++|+++
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~  264 (373)
T 2fo1_E          194 IYNKSERSALHQAAANRDFGMMVYMLNSTKL---------KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV  264 (373)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH---------HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHhcCcc---------ccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc
Confidence            9999999999999999999999999998721         0124468899999999999988   899999999999886


Q ss_pred             ccc--------cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          161 LGY--------INKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       161 ~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                       +.        .+..|.||||+|+..|+.+++++|+++++++++.++..|.||||+|+.+|+
T Consensus       265 -~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          265 -DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  325 (373)
T ss_dssp             -SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             -ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence             33        566899999999999999999999999779999999999999999999886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=205.30  Aligned_cols=178  Identities=18%  Similarity=0.171  Sum_probs=137.5

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .++||.|+..|+.+++++|++++.++....+..|.||||+|+..++.+++++|+ +.+..++.++..|.||||.|+..|+
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~  121 (240)
T 3eu9_A           43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGH  121 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCH
Confidence            345777777777777777777777663344455777777777777777777777 4455666667777777777777777


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCcccccc-CCCcHHHHHHHcC
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-ENVVRMLVKKDRIPLGYINK-AEQTPLAIAIDSS  179 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~-~~~t~l~~a~~~~  179 (215)
                      .+++++|+++|++            ++..+..|.||||.|+..+. .+++++|++.+++. +..+. .|.||||+|+..+
T Consensus       122 ~~~~~~Ll~~~~~------------~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          122 TSIVAYLIAKGQD------------VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             HHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHhcCCC------------ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcC
Confidence            7777777777655            33567788888888886555 78888888888876 45554 8899999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          180 LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       180 ~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +.+++++|+++| ++++.++..|.|||++|+.+|+
T Consensus       189 ~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          189 NTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             CHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCc
Confidence            999999999999 9999999999999999999886

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.4e-35  Score=213.77  Aligned_cols=193  Identities=16%  Similarity=0.148  Sum_probs=156.8

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhc----ccCccc----ccCCCCchHHHHHHHc---CCcchHHHHHHhcccc------
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGR----MQNIFS----TMSPRGNTVLHMAIRF---RNHKVIPEILRQQDSL------   81 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~----~~~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~------   81 (215)
                      ..+.++||.|+..|+.++++.|++.    +.++ +    ..+..|.||||+|+..   |+.+++++|++.+...      
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRL-TDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCT-TSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhccccc-CCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            3455789999999999999998874    4444 2    4578999999999986   9999999999653211      


Q ss_pred             cc----ccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC--ccccccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 037245           82 LR----KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE--PESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  155 (215)
Q Consensus        82 ~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  155 (215)
                      ++    .++..|.||||+|+..|+.+++++|+++|+++.......  .....+..+..|.||||+|+..++.+++++|++
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ  169 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            22    256789999999999999999999999998865321100  000011222379999999999999999999999


Q ss_pred             ---cCCCCccccccCCCcHHHHHHHcCC---------HHHHHHHHHhCCCCcc-------ccCccCccHHHHHHHhCC
Q 037245          156 ---KDRIPLGYINKAEQTPLAIAIDSSL---------TDIACFIIDQRPDSLD-------HRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       156 ---~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~~-------~~~~~g~t~l~~A~~~~~  214 (215)
                         +|+++ +.++..|+||||+|+..++         .+++++|+++| ++++       .++..|.||||+|+.+|+
T Consensus       170 ~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          170 NSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             cccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhCh
Confidence               88887 7899999999999999988         79999999999 8886       589999999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=8e-35  Score=196.55  Aligned_cols=156  Identities=25%  Similarity=0.328  Sum_probs=146.6

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      ..++|+.|+..|+.+++++|++++.++ +..+..|.||||+|+. ++.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            456899999999999999999999998 8999999999999999 9999999999 567888999999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+...+..+..|.|||++|+..++
T Consensus        82 ~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           82 FLDTLQTLLEFQADV------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             CHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999999774            46788999999999999999999999999998667899999999999999999


Q ss_pred             HHHHHHHHHhC
Q 037245          181 TDIACFIIDQR  191 (215)
Q Consensus       181 ~~~~~~Ll~~g  191 (215)
                      .+++++|+++|
T Consensus       150 ~~~~~~Ll~~G  160 (162)
T 1ihb_A          150 NEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999999

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.4e-34  Score=212.85  Aligned_cols=193  Identities=17%  Similarity=0.204  Sum_probs=133.6

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCC-CCchHHHHHHHcCCcchHHHHHHhcc------------------
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSP-RGNTVLHMAIRFRNHKVIPEILRQQD------------------   79 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~ll~~~~------------------   79 (215)
                      ..++++|+.|++.|+.++|++|+++|+++ +.++. .|+||||+|+..|+.+++++|++.+.                  
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            34567899999999999999999999999 76654 58999999999999999999995421                  


Q ss_pred             --------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcC
Q 037245           80 --------------SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK  145 (215)
Q Consensus        80 --------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  145 (215)
                                    .+++.++..|.||||+|+..|+.+++++|+++|+++.....  ........+..|.||||+|+..|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~--~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK--TKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC--CC-----CTTCSCCHHHHHHHHT
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhc--cccccccccCCCCcHHHHHHHCC
Confidence                          23455667788888888888888888888888877543221  11122334455666666666666


Q ss_pred             CHHHHHHHHHc-CCCC------------------------------------ccccccCCCcHHHHHHHcCCHHHHHHHH
Q 037245          146 HENVVRMLVKK-DRIP------------------------------------LGYINKAEQTPLAIAIDSSLTDIACFII  188 (215)
Q Consensus       146 ~~~~~~~ll~~-~~~~------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  188 (215)
                      +.+++++|+++ |+++                                    .+.++..|+||||+|+..++.+++++|+
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            66666666542 3322                                    1334555667777777777777777776


Q ss_pred             HhCCCCccccCccCccHHHHHHHhCC
Q 037245          189 DQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       189 ~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +.+.++++.+|..|.||||+|+++|+
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A~~~g~  285 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLAVELKL  285 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HhcCCcccCcCCCCCCHHHHHHHcCC
Confidence            65336677777777777777776664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=4.8e-34  Score=194.09  Aligned_cols=158  Identities=25%  Similarity=0.361  Sum_probs=145.7

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ....++|+.|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHH
Confidence            44456799999999999999999999998 889999999999999999999999999 5677888999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHc
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS  178 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~  178 (215)
                      .|+.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +.++..|.|||++|+..
T Consensus        90 ~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADV------------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             TTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHh
Confidence            99999999999999874            367889999999999999999999999999987 78899999999999999


Q ss_pred             CCHHHHHHHHHhC
Q 037245          179 SLTDIACFIIDQR  191 (215)
Q Consensus       179 ~~~~~~~~Ll~~g  191 (215)
                      ++.+++++|+++|
T Consensus       157 ~~~~~~~~L~~~G  169 (169)
T 2y1l_E          157 GNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcC
Confidence            9999999999876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=9.6e-35  Score=217.04  Aligned_cols=184  Identities=14%  Similarity=0.042  Sum_probs=148.3

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCC---cchHHHHHHhccccccccCCCCCCHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRN---HKVIPEILRQQDSLLRKHNLKGETPLHI   95 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~ll~~~~~~~~~~~~~g~t~l~~   95 (215)
                      ..+.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+   .++++.|++.....++.++..|.||||+
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence            34455699999999999999999999999 9999999999999999998   8899999977667899999999999999


Q ss_pred             HHH----hCCHHHHHHHHhhcccccCC--------CCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccc
Q 037245           96 AAR----VGDPAIVSTILNYVPAITNG--------TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  163 (215)
Q Consensus        96 a~~----~~~~~~~~~Ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  163 (215)
                      |+.    .|+.+++++|++.++.+...        .....+..++..+..|.||||.|+.      +++|++++   .+.
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~  278 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---LNA  278 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT---TTC
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---CCC
Confidence            999    89999999999885422110        0001134466789999999999985      89999884   367


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          164 INKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       164 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      ++..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+++|
T Consensus       279 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          279 QDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence            8999999999999999999999999999 999999999999999998775

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-34  Score=204.34  Aligned_cols=170  Identities=19%  Similarity=0.221  Sum_probs=153.7

Q ss_pred             cCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Q 037245           31 RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILN  110 (215)
Q Consensus        31 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  110 (215)
                      .|+.+++++|++++.++....+..|.||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+..|+.+++++|++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            367889999999999985556899999999999999999999999 5577888999999999999999999999999999


Q ss_pred             hcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 037245          111 YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ  190 (215)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  190 (215)
                      +++..           ++..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++
T Consensus        80 ~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (223)
T 2f8y_A           80 NRATD-----------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKN  147 (223)
T ss_dssp             BTTSC-----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCC-----------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            88632           3467889999999999999999999999999987 78899999999999999999999999999


Q ss_pred             CCCCccccCccCccHHHHHHHhCC
Q 037245          191 RPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       191 g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      | ++++.++..|.||||+|+.+|+
T Consensus       148 g-~~~~~~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A          148 G-ANKDMQNNREETPLFLAAREGS  170 (223)
T ss_dssp             T-CCTTCCCTTCCCHHHHHHHHTC
T ss_pred             C-CCCCCcCCCCcCHHHHHHHcCC
Confidence            9 9999999999999999999886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=201.55  Aligned_cols=177  Identities=20%  Similarity=0.237  Sum_probs=160.7

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      ++|+.|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|++.........+..|.||||+|+..|+.
T Consensus        11 ~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~   89 (240)
T 3eu9_A           11 WDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL   89 (240)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred             hHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence            4599999999999999999999998 889999999999999999999999999665544445556699999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC-H
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL-T  181 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-~  181 (215)
                      +++++|+++|+++.            ..+..|.||||.|+..++.+++++|+++|+++ +..+..|.||||+|+..+. .
T Consensus        90 ~~v~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           90 SMVVQLMKYGADPS------------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             HHHHHHHHTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSS
T ss_pred             HHHHHHHHcCCCCc------------ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChH
Confidence            99999999997743            57889999999999999999999999999987 7889999999999996665 8


Q ss_pred             HHHHHHHHhCCCCccccCc-cCccHHHHHHHhCC
Q 037245          182 DIACFIIDQRPDSLDHRLP-EELTLLHSAVMRQN  214 (215)
Q Consensus       182 ~~~~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~  214 (215)
                      +++++|++.| .+++..+. .|.||||+|+.+|+
T Consensus       157 ~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~  189 (240)
T 3eu9_A          157 DPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGN  189 (240)
T ss_dssp             TTHHHHHHTT-CCTTCCCTTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHhcC-CCcchhhccCCCcHHHHHHHcCC
Confidence            9999999999 99999987 99999999999886

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-33  Score=211.94  Aligned_cols=175  Identities=17%  Similarity=0.089  Sum_probs=157.8

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccc----------------
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK----------------   84 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~----------------   84 (215)
                      +.+|||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++.                
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCSSHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCcchHHHhhhh
Confidence            445699999999999999999999999 8899999999999999999999999995 4444433                


Q ss_pred             --------------------------------------cCCCCCCHHHHHHHh---CCHHHHHHHHhhcccccCCCCCCc
Q 037245           85 --------------------------------------HNLKGETPLHIAARV---GDPAIVSTILNYVPAITNGTESEP  123 (215)
Q Consensus        85 --------------------------------------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~  123 (215)
                                                            .+..|.||||+|+..   +..+++++|+++|+++        
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~--------  240 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV--------  240 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT--------
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc--------
Confidence                                                  335678999999998   5589999999999874        


Q ss_pred             cccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCc
Q 037245          124 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEEL  203 (215)
Q Consensus       124 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  203 (215)
                          +..+..|.||||+|+..++.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++| ++++.++..|.
T Consensus       241 ----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~  314 (351)
T 3utm_A          241 ----NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGF  314 (351)
T ss_dssp             ----TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSC
T ss_pred             ----CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCC
Confidence                467889999999999999999999999999987 789999999999999999999999999999 99999999999


Q ss_pred             cHHHHHHH
Q 037245          204 TLLHSAVM  211 (215)
Q Consensus       204 t~l~~A~~  211 (215)
                      ||+++|..
T Consensus       315 tal~~a~~  322 (351)
T 3utm_A          315 TAAQMGNE  322 (351)
T ss_dssp             CHHHHSCH
T ss_pred             ChhhhhhH
Confidence            99999843

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.6e-33  Score=209.45  Aligned_cols=196  Identities=18%  Similarity=0.215  Sum_probs=159.9

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCc--------------------------------ccccCCCCchHH
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNI--------------------------------FSTMSPRGNTVL   59 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--------------------------------~~~~~~~g~t~L   59 (215)
                      +++..+...+.+|||+|+..|+.+++++|+++|+++                                .+..+..|.|||
T Consensus        50 dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l  129 (337)
T 4g8k_A           50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF  129 (337)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred             CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence            344444444566799999999999999999988754                                145677899999


Q ss_pred             HHHHHcCCcchHHHHHHhcccccc----------ccCCCCCCHHHHHHHhCCHHHHHHHHh-hcccccCCCCCC------
Q 037245           60 HMAIRFRNHKVIPEILRQQDSLLR----------KHNLKGETPLHIAARVGDPAIVSTILN-YVPAITNGTESE------  122 (215)
Q Consensus        60 ~~A~~~~~~~~~~~ll~~~~~~~~----------~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~------  122 (215)
                      |+|+..++.+++++|++ .++.++          ..+..|.||||+|+..|+.+++++|++ .|+++.......      
T Consensus       130 ~~A~~~~~~~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~  208 (337)
T 4g8k_A          130 MEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  208 (337)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             HHHHHcCcHHHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence            99999999999999995 444443          344568999999999999999999996 477765443332      


Q ss_pred             -------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHH
Q 037245          123 -------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDI  183 (215)
Q Consensus       123 -------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  183 (215)
                                         .+..++.++..|+||||+|+..++.+++++|+..+...++.+|..|+||||+|++.|+.++
T Consensus       209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence                               3445678889999999999999999999999987444448899999999999999999999


Q ss_pred             HHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          184 ACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       184 ~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |++|+++| ++++.+     +|||+|+.+|+
T Consensus       289 v~~Ll~~G-Ad~n~~-----~~L~~A~~~~~  313 (337)
T 4g8k_A          289 AELLCKRG-ASTDCG-----DLVMTARRNYD  313 (337)
T ss_dssp             HHHHHTTS-CSSTTC-----CHHHHHHHTTC
T ss_pred             HHHHHHCC-CCCCCC-----CHHHHHHHcCC
Confidence            99999999 887754     69999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=211.80  Aligned_cols=176  Identities=20%  Similarity=0.238  Sum_probs=160.4

Q ss_pred             HHHHHHHcCChHHHHHHHhcccC--cccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHH----
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQN--IFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAA----   97 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~----   97 (215)
                      ++|.|+..|+.+.++.++..+.+  + +..|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|+    
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~-n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVV-NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHH-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcC-cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            46778888899999999888766  5 7889999999999999999999999996655589999999999999999    


Q ss_pred             -HhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHH
Q 037245           98 -RVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI  176 (215)
Q Consensus        98 -~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~  176 (215)
                       ..++.+++++|++.|...            +..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~  224 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNIN------------AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCAC  224 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCc------------cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHH
Confidence             678899999999999663            356788999999999999999999999999997 789999999999999


Q ss_pred             HcCCHHHHHHHHH-hCCCCccccCccCccHHHHHHHhCC
Q 037245          177 DSSLTDIACFIID-QRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       177 ~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ..|+.+++++|++ .| ++++.+|..|.||||+|+.+|+
T Consensus       225 ~~g~~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          225 EHGHKEIAGLLLAVPS-CDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             HHTCHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHcCC
Confidence            9999999999999 78 9999999999999999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.5e-34  Score=206.72  Aligned_cols=183  Identities=18%  Similarity=0.154  Sum_probs=159.9

Q ss_pred             CCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc-----ccccccCC
Q 037245           13 MDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD-----SLLRKHNL   87 (215)
Q Consensus        13 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~-----~~~~~~~~   87 (215)
                      ++..+.. +.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++...     ..++..+.
T Consensus        38 ~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           38 LNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCCCCTT-CCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             hhccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC
Confidence            4444443 445699999999999999999999999 8899999999999999999999999996542     23677888


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCcccccc
Q 037245           88 KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDD-EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINK  166 (215)
Q Consensus        88 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  166 (215)
                      .|.||||+|+..|+.+++++|+++|+++.            ..+. .|.||||+|+..++.+++++|+++|+++ +.++.
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~  182 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGADVN------------AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTY  182 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccC
Confidence            99999999999999999999999998854            5665 8999999999999999999999999997 78999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcc--ccCccCccHHHHHHH
Q 037245          167 AEQTPLAIAIDSSLTDIACFIIDQRPDSLD--HRLPEELTLLHSAVM  211 (215)
Q Consensus       167 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~--~~~~~g~t~l~~A~~  211 (215)
                      .|.|||++|+..++.+++++|+++| ++..  .++..|.||.+.+..
T Consensus       183 ~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          183 QGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             TCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC--
T ss_pred             CCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhcc
Confidence            9999999999999999999999999 6555  778888888765543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1e-33  Score=192.08  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=145.8

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcC
Confidence            345799999999999999999999988 899999999999999999999999999 457788889999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||+++|+..|+
T Consensus        81 ~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           81 YTDIVKMLLDCGVDV------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             CHHHHHHHHHHTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHCCCCC------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            999999999999774            467889999999999999999999999999987 7889999999999999999


Q ss_pred             HHHHHHHHHhC
Q 037245          181 TDIACFIIDQR  191 (215)
Q Consensus       181 ~~~~~~Ll~~g  191 (215)
                      .+++++|++++
T Consensus       148 ~~~~~~L~~~~  158 (167)
T 3v31_A          148 RSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999988

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.4e-33  Score=194.43  Aligned_cols=151  Identities=19%  Similarity=0.172  Sum_probs=91.2

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccc
Q 037245           49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR  128 (215)
Q Consensus        49 ~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  128 (215)
                      +.+|..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..++.+++++|+++|+++            +
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~   95 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV------------N   95 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------T
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC------------C
Confidence            3455566666666666666666666663 34455555566666666666666666666666665542            2


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHH
Q 037245          129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHS  208 (215)
Q Consensus       129 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~  208 (215)
                      ..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++| ++++.++..|.||+++
T Consensus        96 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~  173 (192)
T 2rfm_A           96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEAS  173 (192)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHH
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHH
Confidence            44555666666666666666666666666554 455566666666666666666666666666 6666666666666666


Q ss_pred             HHHhCC
Q 037245          209 AVMRQN  214 (215)
Q Consensus       209 A~~~~~  214 (215)
                      |+.+|+
T Consensus       174 A~~~~~  179 (192)
T 2rfm_A          174 ARIFGR  179 (192)
T ss_dssp             HHHTTC
T ss_pred             HHHhCc
Confidence            665554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.2e-33  Score=194.65  Aligned_cols=156  Identities=18%  Similarity=0.191  Sum_probs=146.1

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..+
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcC
Confidence            445699999999999999999999998 889999999999999999999999999 556788899999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +.++..|.||+++|+..++
T Consensus       113 ~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          113 YSEMSYFLLEHGANV------------NDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             CHHHHHHHHHTTCCS------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCc
Confidence            999999999999874            467889999999999999999999999999987 7899999999999999999


Q ss_pred             HHHHHHHHHhC
Q 037245          181 TDIACFIIDQR  191 (215)
Q Consensus       181 ~~~~~~Ll~~g  191 (215)
                      .+++++|++++
T Consensus       180 ~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999886

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.8e-33  Score=193.72  Aligned_cols=165  Identities=18%  Similarity=0.208  Sum_probs=150.7

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGET   91 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   91 (215)
                      .++..+.. +.+|||.|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++..+.+++.++..|.|
T Consensus        31 ~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  108 (201)
T 3hra_A           31 QVDEVDTE-GNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN  108 (201)
T ss_dssp             CTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             CCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCc
Confidence            34444444 345699999999999999999999999 8999999999999999999999999998888889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhhc-ccccCCCCCCccccccccCCCCCcHHHHHHhcCC-----HHHHHHHHHcCCCCccccc
Q 037245           92 PLHIAARVGDPAIVSTILNYV-PAITNGTESEPESLLRITDDEGNTPLHNAVRNKH-----ENVVRMLVKKDRIPLGYIN  165 (215)
Q Consensus        92 ~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~  165 (215)
                      |||+|+..|+.+++++|+++| ++            ++..+..|+||||+|+..++     .+++++|+++|+++ +.++
T Consensus       109 ~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~  175 (201)
T 3hra_A          109 ALIPAAEKGHIDNVKLLLEDGRED------------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKD  175 (201)
T ss_dssp             SHHHHHHTTCHHHHHHHHHHCCCC------------TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC------------cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccC
Confidence            999999999999999999998 55            44688899999999999988     99999999999997 7899


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          166 KAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       166 ~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      ..|.|||++|+..++.+++++|+++|
T Consensus       176 ~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          176 NSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999886

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-32  Score=183.89  Aligned_cols=150  Identities=25%  Similarity=0.328  Sum_probs=133.0

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .++|+.|+..|+.+++++|++++.++ + .+..|.||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            46799999999999999999998876 4 5788999999999999999999999 5677788888999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +.++..|.|||++|+..|+.
T Consensus        80 ~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           80 ANIVEVLLKHGADV------------NAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHHHHTTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCH
Confidence            99999999998774            367888999999999999999999999998887 77888999999999999999


Q ss_pred             HHHHHH
Q 037245          182 DIACFI  187 (215)
Q Consensus       182 ~~~~~L  187 (215)
                      +++++|
T Consensus       147 ~i~~~L  152 (153)
T 1awc_B          147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.5e-33  Score=191.53  Aligned_cols=165  Identities=22%  Similarity=0.287  Sum_probs=151.4

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      ++|+.|+..|+.+++++|++++...++..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..|+.
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            45999999999999999999965544889999999999999999999999999 56788899999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHH
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTD  182 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  182 (215)
                      +++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|+++ +..+..|.||+++|+..++.+
T Consensus        86 ~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~  152 (179)
T 3f6q_A           86 DIVQKLLQYKADI------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLREL  152 (179)
T ss_dssp             HHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHH
T ss_pred             HHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHH
Confidence            9999999999874            467899999999999999999999999999997 789999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCccC
Q 037245          183 IACFIIDQRPDSLDHRLPEE  202 (215)
Q Consensus       183 ~~~~Ll~~g~~~~~~~~~~g  202 (215)
                      ++++|+++| ++++..+..+
T Consensus       153 ~~~~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          153 LRERAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHTT-CCCSCBCCCC
T ss_pred             HHHHHHHhh-cCcccCCccc
Confidence            999999999 8888766544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.4e-32  Score=186.47  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=137.0

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCC
Q 037245           54 RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE  133 (215)
Q Consensus        54 ~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  133 (215)
                      .|.||||.|+..|+.+++++|++. +..++.++..|.||||+|+..|+.+++++|+++|+++            +..+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~   68 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP------------QLLGKG   68 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------CCcCCC
Confidence            578999999999999999999954 6778899999999999999999999999999999774            367889


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      |.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++| ++++.++..|.||+++|+..|
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           69 RESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            999999999999999999999999987 788999999999999999999999999999 999999999999999999988


Q ss_pred             C
Q 037245          214 N  214 (215)
Q Consensus       214 ~  214 (215)
                      +
T Consensus       147 ~  147 (167)
T 3v31_A          147 Y  147 (167)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3e-32  Score=185.68  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=136.1

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG  134 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  134 (215)
                      +.+|||.|+..|+.+++++|++.....++.++..|.||||+|+..|+.+++++|+++|+++            +..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g   69 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP------------HILAKER   69 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TCCCTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------hhhcccC
Confidence            4689999999999999999997777768899999999999999999999999999999874            3678899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          135 NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       135 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++| ++++.++..|.||||+|+..|+
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           70 ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCc
Confidence            99999999999999999999999987 788999999999999999999999999999 9999999999999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1.3e-32  Score=186.22  Aligned_cols=157  Identities=22%  Similarity=0.328  Sum_probs=141.3

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      .+.++|+.|+..|+.++++.|++.+....+..+..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCCCCCHHHHHHHc
Confidence            34567999999999999999999665444778889999999999999999999999 56778889999999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcC
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS  179 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~  179 (215)
                      ++.+++++|+++|+++            +..+..|+||||+|+..++.+++++|+++|+++ +.++..|.||+++|+. +
T Consensus        86 ~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           86 GHYEVAELLVKHGAVV------------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             TCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-T
T ss_pred             CcHHHHHHHHhCCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-C
Confidence            9999999999999874            367889999999999999999999999999987 7899999999999877 8


Q ss_pred             CHHHHHHHHHhC
Q 037245          180 LTDIACFIIDQR  191 (215)
Q Consensus       180 ~~~~~~~Ll~~g  191 (215)
                      +.+++++|+++|
T Consensus       152 ~~~i~~~L~~~g  163 (165)
T 3twr_A          152 DTDIQDLLRGDA  163 (165)
T ss_dssp             CHHHHHHHHTC-
T ss_pred             ChHHHHHHhhcc
Confidence            899999999988

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.3e-32  Score=183.97  Aligned_cols=149  Identities=21%  Similarity=0.210  Sum_probs=137.2

Q ss_pred             cCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccccc
Q 037245           51 MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRIT  130 (215)
Q Consensus        51 ~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  130 (215)
                      ....+.++|+.|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|+.+++++|+++|+++            +..
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~   76 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV------------NAV   76 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------Ccc
Confidence            3456789999999999999999999 557788899999999999999999999999999999774            367


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       131 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      +..|.||||+|+..++.+++++|+++|++. +..+..|.||||+|+..++.+++++|+++| ++++.++..|.|||++|+
T Consensus        77 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E           77 DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISI  154 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence            889999999999999999999999999987 788999999999999999999999999999 999999999999999999


Q ss_pred             HhCC
Q 037245          211 MRQN  214 (215)
Q Consensus       211 ~~~~  214 (215)
                      .+|+
T Consensus       155 ~~~~  158 (169)
T 2y1l_E          155 DNGN  158 (169)
T ss_dssp             HTTC
T ss_pred             HhCC
Confidence            9886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=210.33  Aligned_cols=177  Identities=20%  Similarity=0.160  Sum_probs=156.9

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ....++||.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|+ +.+++++.+|..|.||||+|+.
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLI-TAGANVNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHH
Confidence            34456799999999999999999999998 899999999999999999999999999 5678899999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCcccccccc-CCCCCcHHHHH--HhcCCHHHHHHHHHcCCCCccccccCCCcHHHHH
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRIT-DDEGNTPLHNA--VRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA  175 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a  175 (215)
                      .|+.+++++|+++|+++.            .. +..|+||||+|  +..++.+++++|++.|+++ +..+..+.||++.+
T Consensus        97 ~g~~~~v~~Ll~~ga~~~------------~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~  163 (229)
T 2vge_A           97 CNDTVICMALVQHGAAIF------------ATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDY  163 (229)
T ss_dssp             TTCHHHHHHHHTTTCCTT------------CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCB
T ss_pred             cCCHHHHHHHHHcCCCcc------------cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHH
Confidence            999999999999998854            34 46899999999  9999999999999999987 77888899998865


Q ss_pred             HHcCCHHHHHHHHHhCCCC--ccccCccCccHHHHHHHhCC
Q 037245          176 IDSSLTDIACFIIDQRPDS--LDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       176 ~~~~~~~~~~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +...   ..++|++.| ++  ++.+|..|.||||+|+.+|+
T Consensus       164 ~~~~---~~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          164 SAEF---GDELSFREG-ESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             CCSS---TTBCCBCTT-CEEEEEESSCTTCSSEEEEEETTE
T ss_pred             hhcc---ccccCcccc-ccccccccCCCcccHHHHHHHcCC
Confidence            5443   336788888 77  67789999999999998875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=6.8e-32  Score=181.06  Aligned_cols=152  Identities=23%  Similarity=0.361  Sum_probs=138.5

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcc-cCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRM-QNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      .++|+.|+..|+.+++++|+++. .++ +..+..|.||||+ +..|+.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcC
Confidence            46799999999999999999992 266 8889999999999 9999999999999 567788999999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|+||||+|+..++.+++++|++. +++ +..+..|.|||++|+..++
T Consensus        80 ~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV------------NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CHHHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCC
T ss_pred             cHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCc
Confidence            999999999999774            36788999999999999999999999998 665 7889999999999999999


Q ss_pred             HHHHHHHHHh
Q 037245          181 TDIACFIIDQ  190 (215)
Q Consensus       181 ~~~~~~Ll~~  190 (215)
                      .+++++|+++
T Consensus       146 ~~~v~~Ll~~  155 (156)
T 1bd8_A          146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-32  Score=180.22  Aligned_cols=144  Identities=19%  Similarity=0.207  Sum_probs=132.7

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG  134 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  134 (215)
                      ..++|+.|+..|+.+++++|++. +.+++ .+..|.||||+|+..|+.+++++|+++|+++            +..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g   67 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR------------DARTKVD   67 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCTTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCCCCCC
Confidence            36899999999999999999965 44444 6888999999999999999999999998774            3678899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          135 NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       135 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++| ++++.++..|.|||++|+.+|+
T Consensus        68 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           68 RTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999987 788999999999999999999999999999 9999999999999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.4e-32  Score=200.51  Aligned_cols=176  Identities=23%  Similarity=0.276  Sum_probs=141.7

Q ss_pred             hhccHHHHHHHHc---CChHHHHHHHhcccCc------cc----ccCCCCchHHHHHHHcCCcchHHHHHHhcccccccc
Q 037245           19 ATMDHELLNVLRR---GDEHQIRPIAGRMQNI------FS----TMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKH   85 (215)
Q Consensus        19 ~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~------~~----~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~   85 (215)
                      ..+.+|||+|+..   |+.+++++|++++++.      .+    ..+..|.||||+|+..|+.+++++|+ ..+++++.+
T Consensus        52 ~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll-~~ga~~~~~  130 (273)
T 2pnn_A           52 ETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV-ENGADVQAA  130 (273)
T ss_dssp             TTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH-HTTCCTTCC
T ss_pred             cCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHH-HCCCCcCcc
Confidence            3455679999987   9999999999998652      02    25678999999999999999999999 457788888


Q ss_pred             CC--------------CCCCHHHHHHHhCCHHHHHHHHh---hcccccCCCCCCccccccccCCCCCcHHHHHHhcCC--
Q 037245           86 NL--------------KGETPLHIAARVGDPAIVSTILN---YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH--  146 (215)
Q Consensus        86 ~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~--  146 (215)
                      +.              .|.||||+|+..|+.+++++|++   +|++            ++..|..|+||||+|+..++  
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad------------~~~~d~~g~tpLh~A~~~~~~~  198 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------------ISARDSVGNTVLHALVEVADNT  198 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC------------TTCCCTTSCCHHHHHHHHCCSC
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC------------ceeeCCCCCcHHHHHHHccCcc
Confidence            76              79999999999999999999999   8877            44688999999999999888  


Q ss_pred             -------HHHHHHHHHcCCCCc------cccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHH
Q 037245          147 -------ENVVRMLVKKDRIPL------GYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLH  207 (215)
Q Consensus       147 -------~~~~~~ll~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~  207 (215)
                             .+++++|+++|+++.      +..+..|.||||+|+..|+.+++++|+++|+.++..+...+.+|.+
T Consensus       199 ~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                   899999999988763      2488999999999999999999999999995588888877777654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.4e-33  Score=211.01  Aligned_cols=153  Identities=17%  Similarity=0.197  Sum_probs=133.6

Q ss_pred             cCCCCchHHHHHHHcC--CcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccc
Q 037245           51 MSPRGNTVLHMAIRFR--NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR  128 (215)
Q Consensus        51 ~~~~g~t~L~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  128 (215)
                      .+..|.||||+|+..|  +.+++++|+ ..+++++.++..|.||||+|+..|+.+++++|+++|++..       ...++
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------~~~~~  205 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILV-QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS-------SLRLD  205 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSS-------SCCTT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-------ccccc
Confidence            6778999999999999  999999999 4578899999999999999999999999999999997721       12245


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccc-----------
Q 037245          129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDH-----------  197 (215)
Q Consensus       129 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----------  197 (215)
                      ..+..|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++| ++++.           
T Consensus       206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~  283 (364)
T 3ljn_A          206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTV  283 (364)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBSSSSB
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccCcccc
Confidence            78899999999999999999999999999997 789999999999999999999999999998 55433           


Q ss_pred             -cCccCccHHHHHHHhC
Q 037245          198 -RLPEELTLLHSAVMRQ  213 (215)
Q Consensus       198 -~~~~g~t~l~~A~~~~  213 (215)
                       .+..+++|+++|+..|
T Consensus       284 ~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          284 LPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             CGGGCCCCTTSCSSCCH
T ss_pred             cccccccccchhhhhcc
Confidence             4556778877665543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-32  Score=202.24  Aligned_cols=162  Identities=18%  Similarity=0.152  Sum_probs=150.1

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCC-CCHHHHHHHh
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG-ETPLHIAARV   99 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g-~t~l~~a~~~   99 (215)
                      +.+|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++ .+++++.++..| .||||+|+..
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCSSSGGGSHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHc
Confidence            456799999999999999999999999 8899999999999999999999999994 578889999999 8999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcH-HHHHHH
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDD-EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP-LAIAID  177 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~-l~~a~~  177 (215)
                      |+.+++++|+++|++.              .+. .|.||||+|+..|+.+++++|+++|+++ +..+..|.|| ||+|+.
T Consensus       140 ~~~~~v~~Ll~~g~~~--------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          140 NDVSIVSYFLSEIPST--------------FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAID  204 (285)
T ss_dssp             TCHHHHHHHHTTSCTT--------------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHH
T ss_pred             CCHHHHHHHHhCCCcc--------------ccccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHH
Confidence            9999999999999763              222 7899999999999999999999999987 7899999998 999999


Q ss_pred             cCCHHHHHHHHHhCCCCccccCc
Q 037245          178 SSLTDIACFIIDQRPDSLDHRLP  200 (215)
Q Consensus       178 ~~~~~~~~~Ll~~g~~~~~~~~~  200 (215)
                      .++.+++++|+++| ++++.++.
T Consensus       205 ~~~~~~v~~Ll~~g-ad~~~~~~  226 (285)
T 3kea_A          205 NKDIEMLQALFKYD-INIYSANL  226 (285)
T ss_dssp             HTCHHHHHHHTTSC-BCSTTTTG
T ss_pred             cCCHHHHHHHHHcC-CCCCCCCh
Confidence            99999999999999 99998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.98  E-value=2.6e-33  Score=200.63  Aligned_cols=177  Identities=16%  Similarity=0.115  Sum_probs=128.1

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      .+.+|||.|++.|+.+.++.|+++|.++ +. +..|.||||.|+..|+.+++++|+ ..+.+++.++..|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHc
Confidence            3567799999999999999999999998 54 477899999999999999999999 56668999999999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCC-cHHHHH--H
Q 037245          100 GDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQ-TPLAIA--I  176 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-t~l~~a--~  176 (215)
                      |+.+++++|+++|+++            +..|..|+||||+|+..++.+++++|+++|+++ +..+..|. ||||+|  +
T Consensus        81 g~~~~v~~Ll~~ga~~------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~  147 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNV------------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEM  147 (239)
T ss_dssp             TCHHHHHHHHHHTCCT------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSS
T ss_pred             CCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHh
Confidence            9999999999999874            468889999999999999999999999999998 67777666 999999  7


Q ss_pred             HcCCHHHHHHHHHhCCCCcccc---------CccCccHHHHHHHhC
Q 037245          177 DSSLTDIACFIIDQRPDSLDHR---------LPEELTLLHSAVMRQ  213 (215)
Q Consensus       177 ~~~~~~~~~~Ll~~g~~~~~~~---------~~~g~t~l~~A~~~~  213 (215)
                      ..|+.+++++|+++| ++++..         +..+.++.+++...|
T Consensus       148 ~~g~~~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          148 EEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             STTCCCHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             hhccHHHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCC
Confidence            889999999999999 777765         555677777666555

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=1.2e-31  Score=180.95  Aligned_cols=146  Identities=18%  Similarity=0.212  Sum_probs=134.6

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCC
Q 037245           54 RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE  133 (215)
Q Consensus        54 ~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  133 (215)
                      ...||||.|+..|+.+++++|+ +.+..++.++..|.||||+|+. |+.+++++|+++|+++            +..+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~------------~~~~~~   69 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP------------DLKDRT   69 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT------------TCCCTT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC------------CCCCCC
Confidence            4579999999999999999999 5677888999999999999999 9999999999999774            367889


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhC
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQ  213 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  213 (215)
                      |.||||+|+..++.+++++|+++|+++ +.++..|.||||+|+..++.+++++|+++|+..++.++..|.||||+|+.+|
T Consensus        70 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A           70 GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  148 (162)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC
Confidence            999999999999999999999999887 7889999999999999999999999999994447999999999999999988


Q ss_pred             C
Q 037245          214 N  214 (215)
Q Consensus       214 ~  214 (215)
                      +
T Consensus       149 ~  149 (162)
T 1ihb_A          149 R  149 (162)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=5.9e-32  Score=185.41  Aligned_cols=147  Identities=20%  Similarity=0.187  Sum_probs=135.3

Q ss_pred             CCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCC
Q 037245           53 PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDD  132 (215)
Q Consensus        53 ~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  132 (215)
                      ..+.++|+.|+..|+.+++++|++..+.+++.++..|.||||+|+..|+.+++++|+++|+++            +..+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~   70 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI------------NVMNR   70 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------CCcCC
Confidence            457899999999999999999998778889999999999999999999999999999999774            46788


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHh
Q 037245          133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       133 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      .|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++| ++++.++..|.|||++|+..
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           71 GDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHH
Confidence            9999999999999999999999999987 789999999999999999999999999999 99999999999999999776


Q ss_pred             C
Q 037245          213 Q  213 (215)
Q Consensus       213 ~  213 (215)
                      +
T Consensus       149 ~  149 (179)
T 3f6q_A          149 L  149 (179)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.98  E-value=5e-32  Score=183.37  Aligned_cols=147  Identities=21%  Similarity=0.225  Sum_probs=135.8

Q ss_pred             cCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccccc
Q 037245           51 MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRIT  130 (215)
Q Consensus        51 ~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  130 (215)
                      .+..|.|+||.|+..|+.+++++|++..+..+...+..|.||||+|+..|+.+++++|+++|+++            +..
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~   71 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV------------HAK   71 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC------------Ccc
Confidence            35678899999999999999999997777777888889999999999999999999999999774            467


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       131 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      +..|+||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++| ++++.++..|.||+++|+
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~  149 (165)
T 3twr_A           72 DKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVK  149 (165)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHh
Confidence            889999999999999999999999999987 789999999999999999999999999999 999999999999999986


Q ss_pred             H
Q 037245          211 M  211 (215)
Q Consensus       211 ~  211 (215)
                      .
T Consensus       150 ~  150 (165)
T 3twr_A          150 D  150 (165)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.5e-31  Score=193.33  Aligned_cols=159  Identities=23%  Similarity=0.270  Sum_probs=141.6

Q ss_pred             hhccHHHHHHHHc---CChHHHHHHHhcccCcccc-----------cCCCCchHHHHHHHcCCcchHHHHHHhccccccc
Q 037245           19 ATMDHELLNVLRR---GDEHQIRPIAGRMQNIFST-----------MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK   84 (215)
Q Consensus        19 ~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~-----------~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~   84 (215)
                      ..+.+|||+|+..   |+.+++++|+++++++ +.           .+..|.||||+|+..|+.+++++|+ +.+++++.
T Consensus        41 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~  118 (256)
T 2etb_A           41 STGKTCLMKAVLNLQDGVNACIMPLLQIDKDS-GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV-ENGADVHL  118 (256)
T ss_dssp             TTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT-TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH-HTTCCTTC
T ss_pred             CCCCCHHHHHHHccccchHHHHHHHHhcCCcc-cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHH-HcCCCCCc
Confidence            3445569999999   9999999999998876 32           3477999999999999999999999 55778888


Q ss_pred             cCCC-------------CCCHHHHHHHhCCHHHHHHHHh---hcccccCCCCCCccccccccCCCCCcHHHHHHh--cCC
Q 037245           85 HNLK-------------GETPLHIAARVGDPAIVSTILN---YVPAITNGTESEPESLLRITDDEGNTPLHNAVR--NKH  146 (215)
Q Consensus        85 ~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~  146 (215)
                      ++..             |.||||+|+..|+.+++++|++   +|++            ++..|..|+||||+|+.  .++
T Consensus       119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------------~n~~d~~g~TpLh~A~~~~~~~  186 (256)
T 2etb_A          119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------------LEATDSLGNTVLHALVMIADNS  186 (256)
T ss_dssp             CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------------TTCCCTTSCCHHHHHHHHCCSC
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------------cCccCCCCCCHHHHHHHcccCC
Confidence            8876             9999999999999999999999   8877            44689999999999998  788


Q ss_pred             HH-------HHHHHHHcCCCCc------cccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          147 EN-------VVRMLVKKDRIPL------GYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       147 ~~-------~~~~ll~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      .+       ++++|+++|+++.      +.++..|.||||+|+..|+.+++++|+++|
T Consensus       187 ~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            88       9999999988762      578999999999999999999999999998

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.1e-31  Score=177.82  Aligned_cols=144  Identities=21%  Similarity=0.288  Sum_probs=134.0

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG  134 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  134 (215)
                      +.|+||.|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|+++            +..+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~------------~~~~~~g   68 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP------------NVQDTSG   68 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT------------TCCCTTS
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC------------CCcCCCC
Confidence            56899999999999999999977555788899999999999 9999999999999999874            3678899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          135 NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       135 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++  ++++.++..|.||||+|+.+|+
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           69 TSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc
Confidence            99999999999999999999999887 78899999999999999999999999988  8899999999999999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.4e-31  Score=194.22  Aligned_cols=156  Identities=15%  Similarity=0.276  Sum_probs=143.3

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhccc-CcccccCCCCchHHHHHH-----HcCCcchHHHHHHhccccccccCCCCCCHHH
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQ-NIFSTMSPRGNTVLHMAI-----RFRNHKVIPEILRQQDSLLRKHNLKGETPLH   94 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~   94 (215)
                      +.+|||+|+..|+.+++++|++.|+ ++ +..+..|.||||+|+     ..++.+++++|+ ..+...+..+..|.||||
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll-~~g~~~~~~~~~g~tpLh  188 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTALATLKTQDDIETVLQLF-RLGNINAKASQAGQTALM  188 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHH-HHSCTTCCCTTTCCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHH-HcCCCccccCCCCCCHHH
Confidence            4456999999999999999999998 66 899999999999999     668889999999 455777788889999999


Q ss_pred             HHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCccccccCCCcHHH
Q 037245           95 IAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-KDRIPLGYINKAEQTPLA  173 (215)
Q Consensus        95 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~  173 (215)
                      +|+..|+.+++++|+++|+++            +..|..|+||||+|+..|+.+++++|++ .|+++ +.++..|.|||+
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad~------------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~  255 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEADV------------NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALM  255 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCC------------CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHH
Confidence            999999999999999999884            4688999999999999999999999999 78876 789999999999


Q ss_pred             HHHHcCCHHHHHHHHHhC
Q 037245          174 IAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       174 ~a~~~~~~~~~~~Ll~~g  191 (215)
                      +|+..|+.+++++|+++.
T Consensus       256 ~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          256 VALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHhcc
Confidence            999999999999999987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.4e-31  Score=191.88  Aligned_cols=160  Identities=26%  Similarity=0.329  Sum_probs=140.2

Q ss_pred             hhccHHHHHHH---HcCChHHHHHHHhcccCc----------ccccCCCCchHHHHHHHcCCcchHHHHHHhcccccccc
Q 037245           19 ATMDHELLNVL---RRGDEHQIRPIAGRMQNI----------FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKH   85 (215)
Q Consensus        19 ~~~~~~l~~a~---~~~~~~~~~~ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~   85 (215)
                      ..+.+|||+|+   ..|+.+++++|++.+.+.          ....+..|.||||+|+..|+.+++++|+ ..+++++.+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV-EKGADVHAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHH-HTTCCTTCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHH-hCCCCcCcc
Confidence            33556799999   779999999999988542          1344558999999999999999999999 567788888


Q ss_pred             C--------------CCCCCHHHHHHHhCCHHHHHHHHh---hcccccCCCCCCccccccccCCCCCcHHHHHHhcCC--
Q 037245           86 N--------------LKGETPLHIAARVGDPAIVSTILN---YVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH--  146 (215)
Q Consensus        86 ~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~--  146 (215)
                      +              ..|.||||+|+..|+.+++++|++   +|++            ++..|..|+||||+|+..++  
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~------------~~~~d~~g~TpLh~A~~~~~~~  190 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD------------LRRQDSRGNTVLHALVAIADNT  190 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------------TTCCCTTSCCHHHHHHHHCCSS
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------------CcccCCCCCcHHHHHHHhccCc
Confidence            7              689999999999999999999999   7777            44689999999999998877  


Q ss_pred             -------HHHHHHHHHcCCCCc------cccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          147 -------ENVVRMLVKKDRIPL------GYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       147 -------~~~~~~ll~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                             .+++++|+++|+++.      +..+..|.||||+|+..|+.+++++|+++|
T Consensus       191 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence                   799999999988752      468899999999999999999999999999

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=9.5e-31  Score=193.10  Aligned_cols=173  Identities=20%  Similarity=0.253  Sum_probs=148.8

Q ss_pred             HHHHcCChHHHHHHHhcccCcc--------cccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           27 NVLRRGDEHQIRPIAGRMQNIF--------STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        27 ~a~~~~~~~~~~~ll~~~~~~~--------~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      .++..+..+.++.++.....+.        ...+..|.||||.|+..|+.+++++|+ ..+.+++..+..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHH
Confidence            4667777788888887665431        112345789999999999999999999 4567888999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc-------------
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN-------------  165 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-------------  165 (215)
                      .|+.+++++|+++|+++            +..+..|+||||+|+..|+.+++++|+++|+++ +..+             
T Consensus        83 ~g~~~~v~~Ll~~ga~~------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B           83 DDNVDMVKFLVENGANI------------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             TTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSH
T ss_pred             cCCHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhc
Confidence            99999999999999874            367889999999999999999999999998775 3322             


Q ss_pred             -----------------------------------------------cCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q 037245          166 -----------------------------------------------KAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHR  198 (215)
Q Consensus       166 -----------------------------------------------~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  198 (215)
                                                                     ..|.||||+|+..|+.+++++|+++| ++++.+
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~  228 (299)
T 1s70_B          150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIK  228 (299)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC
T ss_pred             chHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCc
Confidence                                                           35789999999999999999999999 999999


Q ss_pred             CccCccHHHHHHHhCC
Q 037245          199 LPEELTLLHSAVMRQN  214 (215)
Q Consensus       199 ~~~g~t~l~~A~~~~~  214 (215)
                      |..|.||||+|+.+|+
T Consensus       229 d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          229 DYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             CTTCCCHHHHHHHTTC
T ss_pred             CCCCCcHHHHHHhcCC
Confidence            9999999999999886

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=1.6e-30  Score=174.34  Aligned_cols=146  Identities=13%  Similarity=0.142  Sum_probs=111.6

Q ss_pred             cccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccc
Q 037245           49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR  128 (215)
Q Consensus        49 ~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  128 (215)
                      ...+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+ .|+.+++++|+++|+++            +
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~------------~   71 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP------------N   71 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC------------C
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC------------C
Confidence            345677899999999999999999999 557788888999999999985 89999999999998774            4


Q ss_pred             ccCCCCCc-HHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHH
Q 037245          129 ITDDEGNT-PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLH  207 (215)
Q Consensus       129 ~~~~~~~~-~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~  207 (215)
                      ..+..|+| |||+|+..++.+++++|+++|+++ +.++..|.||||+|+..++.+++++|+++| ++++.++..|.||.+
T Consensus        72 ~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAE  149 (156)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccc
Confidence            67888998 999999999999999999999887 788899999999999999999999999999 999999999999887


Q ss_pred             HHH
Q 037245          208 SAV  210 (215)
Q Consensus       208 ~A~  210 (215)
                      -+.
T Consensus       150 ~~~  152 (156)
T 1bi7_B          150 GPS  152 (156)
T ss_dssp             ---
T ss_pred             cCC
Confidence            553

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=5.9e-30  Score=167.78  Aligned_cols=131  Identities=15%  Similarity=0.199  Sum_probs=118.6

Q ss_pred             cCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcc
Q 037245           45 QNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPE  124 (215)
Q Consensus        45 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  124 (215)
                      +++ +..+..|.||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+. ++.+++++|+++|+++.        
T Consensus         3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~--------   71 (136)
T 1d9s_A            3 PGI-HMLGGSSDAGLATAAARGQVETVRQLL-EAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN--------   71 (136)
T ss_dssp             CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS--------
T ss_pred             CCc-cCCCCCCccHHHHHHHcCCHHHHHHHH-HcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC--------
Confidence            455 778899999999999999999999999 4577888899999999999999 99999999999997743        


Q ss_pred             ccccccCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          125 SLLRITDDE-GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       125 ~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                          ..+.. |+||||+|+..++.+++++|+++|+++ +.++..|.||||+|+..++.+++++|+++|
T Consensus        72 ----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           72 ----CADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             ----CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                67778 899999999999999999999999887 788999999999999999999999999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=5.1e-30  Score=191.52  Aligned_cols=167  Identities=17%  Similarity=0.178  Sum_probs=137.7

Q ss_pred             HHHHHHcCChHHHHHHHhcccCcccc-cCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC--
Q 037245           25 LLNVLRRGDEHQIRPIAGRMQNIFST-MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD--  101 (215)
Q Consensus        25 l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~--  101 (215)
                      +|.|+..+..++++.|++.+.++ +. .+..|.||||+|+..|+.+++++|+ +.+++++.++..|.||||+|+..|+  
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            57778888889999999999999 87 8999999999999999999999999 5678899999999999999999998  


Q ss_pred             -HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHh----cCCHHHHHHHHHc--------------------
Q 037245          102 -PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR----NKHENVVRMLVKK--------------------  156 (215)
Q Consensus       102 -~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~--------------------  156 (215)
                       .++++.|++++..           .++..+..|+||||+|+.    .++.+++++|++.                    
T Consensus       179 ~~~~~~~ll~~~~~-----------~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~  247 (327)
T 1sw6_A          179 DSGTFEALLDYLYP-----------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK  247 (327)
T ss_dssp             HTTCHHHHHHHHGG-----------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred             cHHHHHHHHHhhhc-----------cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcc
Confidence             7888888888722           245789999999999999    8999999999987                    


Q ss_pred             CCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          157 DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       157 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      |+++ +..+..|.||||.|+.      +++|++++   ++.++..|.||||+|+.+|+
T Consensus       248 g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~  295 (327)
T 1sw6_A          248 ESKP-NDKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGN  295 (327)
T ss_dssp             -------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCC
T ss_pred             cCCc-ccccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCC
Confidence            5665 7788999999999986      89999884   88999999999999999986

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=4.6e-30  Score=176.59  Aligned_cols=159  Identities=10%  Similarity=0.008  Sum_probs=137.8

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCc----chHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNH----KVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      +|+.|++.|+.+.++.++..+.+.  ..+..|.||||+|+..++.    +++++|+ ..+++++.++..|.||||+|+..
T Consensus         9 ~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            9 TVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             SHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Confidence            599999999999999999887543  2236799999999999875    5899999 67889999999999999999999


Q ss_pred             CC------HHHHHHHHhhcccccCCCCCCccccccccCCCCC-cHHHHHHhcC-----CHHHHHHHHH-cCCCCcccccc
Q 037245          100 GD------PAIVSTILNYVPAITNGTESEPESLLRITDDEGN-TPLHNAVRNK-----HENVVRMLVK-KDRIPLGYINK  166 (215)
Q Consensus       100 ~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~ll~-~~~~~~~~~~~  166 (215)
                      ++      .+++++|+++|+++            +.+|..|+ ||||+|+..+     ..+++++|++ +|+++ +.+|.
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadi------------n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~  152 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADI------------TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDK  152 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCS------------SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCT
T ss_pred             CCcchhhHHHHHHHHHHCCCCC------------CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCC
Confidence            87      57899999999884            46889999 9999999844     3569999999 89987 89999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q 037245          167 AEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL  199 (215)
Q Consensus       167 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  199 (215)
                      .|.||||+|++.++.+++++|.++. ...++++
T Consensus       153 ~G~TpL~~A~~~~~~~~v~~L~~~~-~~~~~~~  184 (186)
T 3t8k_A          153 WGLTALEFVKRCQKPIALKMMEDYI-KKYNLKE  184 (186)
T ss_dssp             TSCCHHHHHHTTTCHHHHHHHHHHH-HHHTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHH-HHHhccc
Confidence            9999999999999999999999887 5555544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=3.6e-29  Score=179.08  Aligned_cols=147  Identities=20%  Similarity=0.180  Sum_probs=103.9

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD  131 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  131 (215)
                      +..|.||||.|+..++.+.++.|+ ..+.+++.. ..|.||||.|+..|+.+++++|+++|+++            +..+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll-~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~d   67 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERI-AHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP------------SLPN   67 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC------------CCCC
T ss_pred             CccccccCchhhhhhhHHHHHHHh-ccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC------------CCcC
Confidence            456899999999999999999999 566666643 67899999999999999999999999773            4678


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCc-cHHHHH-
Q 037245          132 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEEL-TLLHSA-  209 (215)
Q Consensus       132 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~-t~l~~A-  209 (215)
                      ..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++| ++++.++..|. ||+|+| 
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHH
Confidence            99999999999999999999999999987 789999999999999999999999999999 99999998887 999999 


Q ss_pred             -HHhCC
Q 037245          210 -VMRQN  214 (215)
Q Consensus       210 -~~~~~  214 (215)
                       +..|+
T Consensus       146 ~~~~g~  151 (239)
T 1ycs_B          146 EMEEGY  151 (239)
T ss_dssp             SSSTTC
T ss_pred             Hhhhcc
Confidence             55554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=179.09  Aligned_cols=158  Identities=17%  Similarity=0.132  Sum_probs=133.3

Q ss_pred             HHHHHhcccCcc--cccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhccc
Q 037245           37 IRPIAGRMQNIF--STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA  114 (215)
Q Consensus        37 ~~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  114 (215)
                      ++.|++++.++.  +..+..+.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHH-HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            467788887761  234566788999999999999999999 45678899999999999999999999999999999987


Q ss_pred             ccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc-cCCCcHHHHH--HHcCCHHHHHHHHHhC
Q 037245          115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN-KAEQTPLAIA--IDSSLTDIACFIIDQR  191 (215)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g  191 (215)
                      +            +..|..|+||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|  +..++.+++++|+++|
T Consensus        80 ~------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           80 V------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             T------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             C------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            4            467889999999999999999999999999998 5554 6999999999  9999999999999999


Q ss_pred             CCCccccCccCccHHHHH
Q 037245          192 PDSLDHRLPEELTLLHSA  209 (215)
Q Consensus       192 ~~~~~~~~~~g~t~l~~A  209 (215)
                       ++++.++..|.||++.+
T Consensus       147 -a~~~~~~~~~~~~l~~~  163 (229)
T 2vge_A          147 -QSMGLMNSGAVYALWDY  163 (229)
T ss_dssp             -HHTTTSGGGEEEESSCB
T ss_pred             -CCcccccCCchHHHHHH
Confidence             99999999999988744

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=1e-27  Score=154.82  Aligned_cols=124  Identities=30%  Similarity=0.465  Sum_probs=106.8

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCC
Q 037245           54 RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE  133 (215)
Q Consensus        54 ~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  133 (215)
                      +|.||||+|+..|+.+++++|++ .+..++.++..|.||||+|+..++.+++++|+++|+++            +..+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~   67 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKN   67 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC------------cccCCC
Confidence            47889999999999999998884 56677778888999999999999999999999888763            357788


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      |.||||+|+..++.+++++|+++|+++ +.++..|.|||++|+..++.+++++|+++|
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           68 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            899999999999999999999988886 678888999999999999999999999988

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=3.9e-28  Score=159.10  Aligned_cols=125  Identities=22%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             CCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCC
Q 037245           53 PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDD  132 (215)
Q Consensus        53 ~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  132 (215)
                      ..+.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++|+++            +..+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~d~   78 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV------------NAVDA   78 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCC
Confidence            33455555555555555555555 334445555555555555555555555555555555442            23455


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       133 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      .|.||||+|+..++.+++++|+++|++. +..+..|.|||++|+..++.+++++|+++|
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5556666666655666666666555554 455555666666666666666666665543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=7.6e-29  Score=166.20  Aligned_cols=141  Identities=18%  Similarity=0.140  Sum_probs=114.7

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCC-HHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGET-PLHIAA   97 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t-~l~~a~   97 (215)
                      ..+.++||.|+..|+.+++++|++++.++ +..+..|.||||+|+ .++.+++++|+ ..+.+++.++..|.| |||+|+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll-~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHH
Confidence            33456799999999999999999999998 899999999999985 89999999999 567889999999999 999999


Q ss_pred             HhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHH
Q 037245           98 RVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA  175 (215)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a  175 (215)
                      ..|+.+++++|+++|+++            +..+..|+||||+|+..++.+++++|+++|+++ +..+..|.||.+.+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~------------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARL------------DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCS------------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HCCCHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence            999999999999999884            467889999999999999999999999999997 78888999887643

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.3e-27  Score=156.58  Aligned_cols=127  Identities=21%  Similarity=0.346  Sum_probs=115.8

Q ss_pred             chhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           17 LPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        17 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      ....+.++||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|+ +.+.+++.++..|.||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHH
Confidence            3455667899999999999999999999998 899999999999999999999999999 56788899999999999999


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD  157 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  157 (215)
                      +..|+.+++++|+++|+++            +..|..|.|||++|+..++.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADV------------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCC------------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999874            367889999999999999999999999865

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.6e-28  Score=159.23  Aligned_cols=132  Identities=16%  Similarity=0.165  Sum_probs=118.4

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCC-CC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK-GE   90 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-g~   90 (215)
                      .++..+..+ .+|||.|+..|+.+++++|++++.++ +..+..|.||||+|+. ++.+++++|+ +.+.+++.++.. |.
T Consensus         4 ~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            4 GIHMLGGSS-DAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLL-LHGAEPNCADPATLT   79 (136)
T ss_dssp             CCSCCCCCC-SCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHH-HHTCCSSCCBTTTTB
T ss_pred             CccCCCCCC-ccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCCCCC
Confidence            444444444 44699999999999999999999998 8999999999999999 9999999999 567788899999 99


Q ss_pred             CHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 037245           91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  159 (215)
Q Consensus        91 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  159 (215)
                      ||||+|+..|+.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|++
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARL------------DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCC------------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999874            46788999999999999999999999998864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=8.8e-29  Score=170.18  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=125.1

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccC-CCCCCHHHHHHHhCCH----HHHHHHHhhcccccCCCCCCccccccc
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHN-LKGETPLHIAARVGDP----AIVSTILNYVPAITNGTESEPESLLRI  129 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~~~~~  129 (215)
                      ++++|+.|+..|+.+.++.++...   .+.++ ..|.||||+|+..++.    +++++|+++|+++            +.
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv------------n~   70 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI------------KS   70 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS------------SC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC------------CC
Confidence            467899999999999999988543   23344 6799999999999975    5999999999884            46


Q ss_pred             cCCCCCcHHHHHHhcCC------HHHHHHHHHcCCCCccccccCCC-cHHHHHHHcC-----CHHHHHHHHH-hCCCCcc
Q 037245          130 TDDEGNTPLHNAVRNKH------ENVVRMLVKKDRIPLGYINKAEQ-TPLAIAIDSS-----LTDIACFIID-QRPDSLD  196 (215)
Q Consensus       130 ~~~~~~~~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~  196 (215)
                      ++..|+||||+|+..+.      .+++++|+++|+++ +.+|..|. ||||+|+..+     ..+++++|++ +| ++++
T Consensus        71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~  148 (186)
T 3t8k_A           71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLL  148 (186)
T ss_dssp             CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTT
T ss_pred             CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCc
Confidence            88999999999999886      68899999999998 88999999 9999999844     4569999999 89 9999


Q ss_pred             ccCccCccHHHHHHHhCC
Q 037245          197 HRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       197 ~~~~~g~t~l~~A~~~~~  214 (215)
                      .+|..|.||||+|++.|+
T Consensus       149 ~~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A          149 IKDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             CCCTTSCCHHHHHHTTTC
T ss_pred             ccCCCCCCHHHHHHHcCC
Confidence            999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1e-26  Score=150.08  Aligned_cols=125  Identities=28%  Similarity=0.417  Sum_probs=115.9

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.++||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|+ +.+..++.++..|.||||+|+..+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcC
Confidence            345799999999999999999999998 888999999999999999999999999 567788889999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI  159 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  159 (215)
                      +.+++++|+++|+++            +..+..|.|||++|+..++.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~g~~~------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999774            36788999999999999999999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=7.3e-27  Score=153.18  Aligned_cols=128  Identities=24%  Similarity=0.324  Sum_probs=88.6

Q ss_pred             ccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccc
Q 037245           50 TMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI  129 (215)
Q Consensus        50 ~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  129 (215)
                      .++..|.||||+|+..|+.+++++|+ +.+.+++.++..|.||||+|+..++.+++++|+++|+++            +.
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~   71 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV------------NT   71 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc------------cC
Confidence            34667777777777777777777777 445666677777777777777777777777777776653            34


Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       130 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      .+..|.||||+|+..++.+++++|+++|+++ +.++..|.||+++|+..+..+++++|.+.+
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            5666777777777777777777777777765 567777777777777776666666665544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=7.7e-27  Score=172.11  Aligned_cols=139  Identities=21%  Similarity=0.223  Sum_probs=120.1

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccc------cCCCCCCHHHHHHHh---CCHHHHHHHHhhcccccCCCCCCccc
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRK------HNLKGETPLHIAARV---GDPAIVSTILNYVPAITNGTESEPES  125 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~  125 (215)
                      ..++|+.|+..++.+.++.|+ ..+.+++.      .+..|.||||+|+..   ++.+++++|+++|+++          
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv----------  219 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL----------  219 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT----------
T ss_pred             hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC----------
Confidence            457799999999999999999 55666666      688999999999997   8999999999999874          


Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccH
Q 037245          126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL  205 (215)
Q Consensus       126 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~  205 (215)
                        +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.+++++|+++| ++      .|.||
T Consensus       220 --n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tp  289 (301)
T 2b0o_E          220 --DAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFP  289 (301)
T ss_dssp             --TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSC
T ss_pred             --CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCCh
Confidence              468899999999999999999999999999997 789999999999999999999999999999 54      58999


Q ss_pred             HHHHHHhCC
Q 037245          206 LHSAVMRQN  214 (215)
Q Consensus       206 l~~A~~~~~  214 (215)
                      ||+|+..|.
T Consensus       290 Lh~A~~~g~  298 (301)
T 2b0o_E          290 LHVDYSWVI  298 (301)
T ss_dssp             CC-------
T ss_pred             hHHHHhcCC
Confidence            999998874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=2.8e-26  Score=157.60  Aligned_cols=140  Identities=18%  Similarity=0.283  Sum_probs=123.4

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccC-CCCCCHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHN-LKGETPLHIAA   97 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~   97 (215)
                      ..+.+|||.|+..|+.++++.|++ +.++ +..+..|.||||+|+..|+.+++++|+ +.+.+++.++ ..|.||||+|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHH
Confidence            456678999999999999999999 8888 889999999999999999999999999 5677888787 88999999999


Q ss_pred             HhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH
Q 037245           98 RVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAID  177 (215)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~  177 (215)
                      ..|+.+++++|+++|+++            +..|..|+||||+|+..++                  ...+.+++++|+.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~------------~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~  168 (183)
T 3deo_A          119 GYVRPEVVEALVELGADI------------EVEDERGLTALELAREILK------------------TTPKGNPMQFGRR  168 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCT------------TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCC------------cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHH
Confidence            999999999999999874            4688999999999986321                  1346789999999


Q ss_pred             cCCHHHHHHHHHhC
Q 037245          178 SSLTDIACFIIDQR  191 (215)
Q Consensus       178 ~~~~~~~~~Ll~~g  191 (215)
                      .|..+++++|.++.
T Consensus       169 ~~~~~i~~~L~~~~  182 (183)
T 3deo_A          169 IGLEKVINVLEGQV  182 (183)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHhh
Confidence            99999999998653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=3e-26  Score=164.35  Aligned_cols=140  Identities=18%  Similarity=0.277  Sum_probs=125.1

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccC-CCCCCHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHN-LKGETPLHIAA   97 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~   97 (215)
                      ..+.+|||.|+..|+.++++.|++ +.++ +..+..|.||||+|+..|+.+++++|+ ..+.+++.++ ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHH
Confidence            456788999999999999999999 8888 899999999999999999999999999 5677888887 88999999999


Q ss_pred             HhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH
Q 037245           98 RVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAID  177 (215)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~  177 (215)
                      ..|+.+++++|+++|+++            +..+..|.||||+|+..+                  ....+.|||++|+.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~------------~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~  169 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADI------------EVEDERGLTALELAREIL------------------KTTPKGNPMQFGRR  169 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHH
Confidence            999999999999999884            468899999999998521                  22457899999999


Q ss_pred             cCCHHHHHHHHHhC
Q 037245          178 SSLTDIACFIIDQR  191 (215)
Q Consensus       178 ~~~~~~~~~Ll~~g  191 (215)
                      .|+.+++++|++++
T Consensus       170 ~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          170 IGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHhc
Confidence            99999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.8e-27  Score=155.17  Aligned_cols=115  Identities=26%  Similarity=0.283  Sum_probs=78.3

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccc
Q 037245           84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  163 (215)
Q Consensus        84 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  163 (215)
                      .++..|.||||+|+..|+.+++++|+++|+++            +..+..|+||||+|+..++.+++++|+++|++. +.
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~   71 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NT   71 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cC
Confidence            45666777777777777777777777766553            245666777777777777777777777766665 56


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHh
Q 037245          164 INKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       164 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      .+..|.||||+|+..++.+++++|+++| ++++.++..|.||+++|+..
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhc
Confidence            6666777777777777777777777776 66777777777777766543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.9e-29  Score=190.65  Aligned_cols=154  Identities=10%  Similarity=0.094  Sum_probs=113.5

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCc--ccccCCCCchHHHHHHHcCCcchHHHHHHhcccc---ccccCCCCCCHHHHH
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNI--FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSL---LRKHNLKGETPLHIA   96 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~---~~~~~~~g~t~l~~a   96 (215)
                      .+|||.|+..|+.+++++|++++...  ....+..|.||||+|+..|+.+++++|++.+ ++   .+..+.+ .||||+|
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g-ad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHHHSHHH-HHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCC-CCHHHHH
Confidence            36788888888888888888887621  0123456778888888888888888888544 21   1222222 8888888


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCCccccccc--cCCCCCcHHHHHH-hcCCHHHHHHHHHcCCCCccccccCCCcHHH
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESEPESLLRI--TDDEGNTPLHNAV-RNKHENVVRMLVKKDRIPLGYINKAEQTPLA  173 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  173 (215)
                      +..|+.+++++|+++|+++.            .  .+..|.||||+|+ ..|+.+++++|+++|+        .|.|||+
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~------------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~  230 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEA------------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEI  230 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGH------------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCccc------------hhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHH
Confidence            88888888888888887632            3  5667888888888 8888888888888552        2678888


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCcccc
Q 037245          174 IAIDSSLTDIACFIIDQRPDSLDHR  198 (215)
Q Consensus       174 ~a~~~~~~~~~~~Ll~~g~~~~~~~  198 (215)
                      .|+..|+.+++++|+++| ++++.+
T Consensus       231 ~Aa~~g~~evv~lL~~~g-a~~~~~  254 (376)
T 2aja_A          231 HEFEYGEKYVNPFIARHV-NRLKEM  254 (376)
T ss_dssp             CTTTTTTTTHHHHHHHHH-HHHHHH
T ss_pred             HHHHCCCHHHHHHHHhcC-cccccc
Confidence            888888888888888888 665543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=9.8e-27  Score=164.65  Aligned_cols=137  Identities=18%  Similarity=0.171  Sum_probs=109.2

Q ss_pred             cCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhh-cccccCCCCCCccccccc
Q 037245           51 MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY-VPAITNGTESEPESLLRI  129 (215)
Q Consensus        51 ~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~  129 (215)
                      .+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..|+.+++++|+++ |++            ++.
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~------------~~~  135 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE------------LNQ  135 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC------------CCC
T ss_pred             cccccccccccccccCcHHHHHHHH-hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC------------ccc
Confidence            4556789999999999999999999 46677888999999999999999999999999998 766            446


Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccC
Q 037245          130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEE  202 (215)
Q Consensus       130 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g  202 (215)
                      .+..|+||||+|+..|+.+++++|+++|+++ +.++..|.|||++|+..+..++++.|++.+ +...+.+..|
T Consensus       136 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~  206 (222)
T 3ehr_A          136 QNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED  206 (222)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence            8889999999999999999999999999987 789999999999999999999999999999 7777766554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=2.7e-26  Score=169.18  Aligned_cols=137  Identities=19%  Similarity=0.259  Sum_probs=119.3

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccc------cCCCCchHHHHHHHc---CCcchHHHHHHhccccccccCCCCCCHH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFST------MSPRGNTVLHMAIRF---RNHKVIPEILRQQDSLLRKHNLKGETPL   93 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l   93 (215)
                      .+|+.|+..|+.+.++.|+..+.++ +.      .+..|.||||+|+..   ++.+++++|+ ..+++++.+|..|.|||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHH-HHSSCTTCCCTTCCCHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHH-hcCCCCCCCCCCCCCHH
Confidence            4699999999999999999999998 65      688999999999997   8999999999 55788999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHH
Q 037245           94 HIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLA  173 (215)
Q Consensus        94 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  173 (215)
                      |+|+..|+.+++++|+++|+++            +..|..|.|||++|+..++.+++++|+++|++       .|.||||
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~------------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh  291 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALV------------GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLH  291 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhH
Confidence            9999999999999999999884            46889999999999999999999999998764       4789999


Q ss_pred             HHHHcCC
Q 037245          174 IAIDSSL  180 (215)
Q Consensus       174 ~a~~~~~  180 (215)
                      +|+..|+
T Consensus       292 ~A~~~g~  298 (301)
T 2b0o_E          292 VDYSWVI  298 (301)
T ss_dssp             -------
T ss_pred             HHHhcCC
Confidence            9998875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=2.6e-27  Score=162.80  Aligned_cols=129  Identities=19%  Similarity=0.135  Sum_probs=108.6

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD  131 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  131 (215)
                      +..|.||||+|+..|+.++++.|++  +.+++.++..|.||||+|+..|+.+++++|+++|+++.            ..+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------~~~  106 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRD  106 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------cCC
Confidence            4578899999999999999999995  77888899999999999999999999999999987744            455


Q ss_pred             -CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          132 -DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       132 -~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                       ..|+||||+|+..++.+++++|+++|+++ +.++..|.||||+|++.++.                  ..+.+++++|+
T Consensus       107 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~  167 (183)
T 3deo_A          107 MRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGR  167 (183)
T ss_dssp             SSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHH
T ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHH
Confidence             78999999999999999999999999887 78899999999999874322                  23567888887


Q ss_pred             HhC
Q 037245          211 MRQ  213 (215)
Q Consensus       211 ~~~  213 (215)
                      ..|
T Consensus       168 ~~~  170 (183)
T 3deo_A          168 RIG  170 (183)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=7.8e-26  Score=145.54  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=100.6

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccc
Q 037245           86 NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN  165 (215)
Q Consensus        86 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  165 (215)
                      +..|.||||.|+..|+.+++++|+++|+++            +..+..|+||||+|+..++.+++++|+++|+++ +.++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d   70 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPD   70 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCC
Confidence            456789999999999999999999998773            367888999999999999999999999999887 7889


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHh
Q 037245          166 KAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       166 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      ..|+||||+|+..++.+++++|+++| ++++.++..|.||||+|...
T Consensus        71 ~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           71 KHHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCH
Confidence            99999999999999999999999999 99999999999999998543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.7e-27  Score=180.00  Aligned_cols=165  Identities=11%  Similarity=0.042  Sum_probs=131.8

Q ss_pred             HHHHHHH-cCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcccc--ccccCCCCCCHHHHHHHhC
Q 037245           24 ELLNVLR-RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSL--LRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        24 ~l~~a~~-~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~--~~~~~~~g~t~l~~a~~~~  100 (215)
                      .++.+.. .++.+.++++++++.+.        .||||+|+..|+.+++++|++.+...  ....+..|.||||+|+..|
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~--------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G  139 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS--------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG  139 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH--------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc--------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC
Confidence            4555555 57888899998887765        59999999999999999999543311  1123456789999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccc--cccCCCcHHHHHH-H
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY--INKAEQTPLAIAI-D  177 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~~~t~l~~a~-~  177 (215)
                      +.+++++|+++|++...         .+..+.+ .||||+|+..|+.+++++|+++|++. +.  .+..|.||||+|+ .
T Consensus       140 ~~eiv~~Ll~~gad~~~---------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~  208 (376)
T 2aja_A          140 HLHVLNRLCELAPTEIM---------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVG  208 (376)
T ss_dssp             CHHHHHHHHHSCTTTHH---------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHhCCCCccc---------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHH
Confidence            99999999999964210         0112223 89999999999999999999999886 44  7788999999999 9


Q ss_pred             cCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCCC
Q 037245          178 SSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQNY  215 (215)
Q Consensus       178 ~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~  215 (215)
                      .|+.+++++|+++| +       .|.|||++|+.+|+.
T Consensus       209 ~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          209 RGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             TCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTT
T ss_pred             CCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCH
Confidence            99999999999977 3       288999999998863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.1e-25  Score=144.89  Aligned_cols=110  Identities=20%  Similarity=0.215  Sum_probs=69.9

Q ss_pred             CCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCC
Q 037245           53 PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDD  132 (215)
Q Consensus        53 ~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  132 (215)
                      ..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++|+++            +..|.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~d~   71 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI------------NAPDK   71 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT------------TCCCT
T ss_pred             cccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCC
Confidence            44566666666666666666666 344555666666666666666666666666666666552            24566


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHH
Q 037245          133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI  176 (215)
Q Consensus       133 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~  176 (215)
                      .|+||||+|+..++.+++++|+++|+++ +.++..|.||+++|.
T Consensus        72 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           72 HHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD  114 (123)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence            6666666666666666666666666665 556666666766663

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=3.5e-25  Score=158.79  Aligned_cols=130  Identities=18%  Similarity=0.116  Sum_probs=113.7

Q ss_pred             CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccC
Q 037245           52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITD  131 (215)
Q Consensus        52 ~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  131 (215)
                      +..|.||||+|+..|+.+++++|++  +.+++.++..|.||||+|+..|+.+++++|+++|+++.            ..+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------~~~  107 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRD  107 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------CCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------cCC
Confidence            4568999999999999999999995  77889999999999999999999999999999998854            455


Q ss_pred             -CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          132 -DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       132 -~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                       ..|+||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..+.                  ...+.|||++|+
T Consensus       108 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~  168 (244)
T 3ui2_A          108 MRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGR  168 (244)
T ss_dssp             SSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHH
Confidence             78999999999999999999999999987 7899999999999986321                  245789999999


Q ss_pred             HhCC
Q 037245          211 MRQN  214 (215)
Q Consensus       211 ~~~~  214 (215)
                      ..|+
T Consensus       169 ~~g~  172 (244)
T 3ui2_A          169 RIGL  172 (244)
T ss_dssp             HHHH
T ss_pred             HcCh
Confidence            8764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1.1e-25  Score=159.17  Aligned_cols=127  Identities=20%  Similarity=0.254  Sum_probs=110.7

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.++||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++..+.+++.++..|.||||+|+..|
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            356799999999999999999999998 8899999999999999999999999996558899999999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  160 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  160 (215)
                      +.+++++|+++|+++            +..+..|.|||++|+..+..++++.|++.++..
T Consensus       152 ~~~~v~~Ll~~ga~~------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          152 YADIVQLLLAKGART------------DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CHHHHHHHHHHTCCS------------CCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             CHHHHHHHHHcCCCC------------ccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            999999999999884            468899999999999999999999999988876

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=3.5e-24  Score=161.41  Aligned_cols=144  Identities=18%  Similarity=0.204  Sum_probs=93.8

Q ss_pred             CCchHHHHHHHc-CCcchHHHHHHhccccccccC--CCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccccc
Q 037245           54 RGNTVLHMAIRF-RNHKVIPEILRQQDSLLRKHN--LKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRIT  130 (215)
Q Consensus        54 ~g~t~L~~A~~~-~~~~~~~~ll~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  130 (215)
                      .+.|+||.|+.. ++.+++++|+ ..+.+++..+  ..|.||||+|+..|+.+++++|+++|+++            +..
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv------------n~~  264 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV------------NQA  264 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------CCC
Confidence            345678888877 7888887777 4566666666  67778888888888888888888777663            356


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCC--CCccccCccCccHHHH
Q 037245          131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRP--DSLDHRLPEELTLLHS  208 (215)
Q Consensus       131 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~--~~~~~~~~~g~t~l~~  208 (215)
                      |..|+||||+|+..++.+++++|+++|+++ +..|..|.||||+|+..++.+++++|+..+.  ......+..+.|++++
T Consensus       265 d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          265 DSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI  343 (368)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence            777788888888888888888888877776 6777778888888888888888887776652  2233345556666665


Q ss_pred             HHH
Q 037245          209 AVM  211 (215)
Q Consensus       209 A~~  211 (215)
                      +..
T Consensus       344 ~~~  346 (368)
T 3jue_A          344 FRD  346 (368)
T ss_dssp             ---
T ss_pred             HHH
Confidence            543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=7.9e-24  Score=159.51  Aligned_cols=156  Identities=18%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             cHHHHHHHHc-CChHHHHHHHhcccCcccccC--CCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           22 DHELLNVLRR-GDEHQIRPIAGRMQNIFSTMS--PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        22 ~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      .++||.|+.. |+.++++.|+++|.++ +..+  ..|.||||+|+..++.+++++|+ ..+++++.+|..|.||||+|+.
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL-~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHH
Confidence            4579999999 9999999999999999 7777  89999999999999999999999 5688899999999999999999


Q ss_pred             hCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCc--cccccCCCcHHHHHH
Q 037245           99 VGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL--GYINKAEQTPLAIAI  176 (215)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~t~l~~a~  176 (215)
                      .|+.+++++|+++|+++            +..|..|.||||+|+..++.+++++|+..+....  ...+..+.|+++++.
T Consensus       278 ~g~~~~v~~LL~~Gad~------------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          278 LGHTGLACLFLKRGADL------------GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             cCcHHHHHHHHHCcCCC------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            99999999999999884            4688999999999999999999999998754331  234456778887766


Q ss_pred             HcCC--HHHHHHHHHhC
Q 037245          177 DSSL--TDIACFIIDQR  191 (215)
Q Consensus       177 ~~~~--~~~~~~Ll~~g  191 (215)
                      ....  .+..+.|.+++
T Consensus       346 ~~~~~~~~~~ekl~r~~  362 (368)
T 3jue_A          346 DFSLMASDDPEKLSRRS  362 (368)
T ss_dssp             -----------------
T ss_pred             HHHhhcCCCHHHHHhcC
Confidence            5432  23344555444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.5e-23  Score=126.51  Aligned_cols=91  Identities=32%  Similarity=0.511  Sum_probs=84.6

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccC
Q 037245           88 KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA  167 (215)
Q Consensus        88 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  167 (215)
                      +|.||||+|+..|+.+++++|+++|+++            +.++..|+||||+|+..++.+++++|+++|+++ +.++..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~   67 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN   67 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC
Confidence            4899999999999999999999999774            468899999999999999999999999999987 789999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhC
Q 037245          168 EQTPLAIAIDSSLTDIACFIIDQR  191 (215)
Q Consensus       168 ~~t~l~~a~~~~~~~~~~~Ll~~g  191 (215)
                      |.||||+|+..++.+++++|+++|
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           68 GRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999998

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=8.2e-23  Score=149.02  Aligned_cols=123  Identities=19%  Similarity=0.209  Sum_probs=110.2

Q ss_pred             chHHHHHHHcCCcchHHHHHHhcccc------ccccCCCCCCHHHHHHHh---CCHHHHHHHHhhcccccCCCCCCcccc
Q 037245           56 NTVLHMAIRFRNHKVIPEILRQQDSL------LRKHNLKGETPLHIAARV---GDPAIVSTILNYVPAITNGTESEPESL  126 (215)
Q Consensus        56 ~t~L~~A~~~~~~~~~~~ll~~~~~~------~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~  126 (215)
                      .++|+.|+..++.+.++.+++. +.+      ++..+..|.||||+|+..   ++.+++++|+++|+++           
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-----------  198 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-----------  198 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-----------
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-----------
Confidence            4689999999999999999854 444      444578899999999999   8999999999999884           


Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 037245          127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRP  192 (215)
Q Consensus       127 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  192 (215)
                       +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       199 -n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          199 -DKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             -TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             468889999999999999999999999999987 7899999999999999999999999999993

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=5e-23  Score=150.16  Aligned_cols=125  Identities=23%  Similarity=0.314  Sum_probs=114.1

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCc-----ccccCCCCchHHHHHHHc---CCcchHHHHHHhccccccccCCCCCCHHH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNI-----FSTMSPRGNTVLHMAIRF---RNHKVIPEILRQQDSLLRKHNLKGETPLH   94 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~   94 (215)
                      .+|+.|+..|+.+.++.++..|.++     ++..+..|.||||+|+..   ++.+++++|+ ..+++++.+|..|.||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll-~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH-HCCCCccccCCCCCCHHH
Confidence            4699999999999999999999885     144588899999999999   8999999999 567889999999999999


Q ss_pred             HHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 037245           95 IAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP  160 (215)
Q Consensus        95 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  160 (215)
                      +|+..|+.+++++|+++|+++            +..|..|.||||+|+..|+.+++++|+++|+..
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASI------------EIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCC------------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999884            468999999999999999999999999998765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=1e-23  Score=133.97  Aligned_cols=109  Identities=26%  Similarity=0.326  Sum_probs=99.4

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccc
Q 037245           84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY  163 (215)
Q Consensus        84 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  163 (215)
                      .+|..|.||||+|+..|+.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+++|++. +.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NA   70 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS------------SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cc
Confidence            47889999999999999999999999998774            367889999999999999999999999999987 78


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHH
Q 037245          164 INKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLL  206 (215)
Q Consensus       164 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l  206 (215)
                      .+..|.||||+|+..++.+++++|+++| ++++.++..|.+|-
T Consensus        71 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           71 RSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            8999999999999999999999999999 99999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=8.8e-23  Score=124.68  Aligned_cols=91  Identities=35%  Similarity=0.548  Sum_probs=56.1

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG  134 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  134 (215)
                      |.||||+|+..++.+++++|+ +.+.+++.++..|.||||+|+..++.+++++|+++|+++            +..|..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll-~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------------~~~d~~g   68 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNG   68 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTS
T ss_pred             CCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCC
Confidence            556666666666666666666 345555666666666666666666666666666666552            2455566


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCC
Q 037245          135 NTPLHNAVRNKHENVVRMLVKKDR  158 (215)
Q Consensus       135 ~~~l~~a~~~~~~~~~~~ll~~~~  158 (215)
                      +||||+|+..++.+++++|+++|+
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           69 RTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            666666666666666666666554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=1.4e-22  Score=128.73  Aligned_cols=109  Identities=28%  Similarity=0.354  Sum_probs=91.1

Q ss_pred             ccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccc
Q 037245           50 TMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI  129 (215)
Q Consensus        50 ~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  129 (215)
                      .+|..|.||||+|+..++.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+++|+++            +.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV------------NA   70 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT------------TC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------cc
Confidence            46788999999999999999999988 556778888889999999999999999999999988774            35


Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 037245          130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL  172 (215)
Q Consensus       130 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l  172 (215)
                      .+..|.||||+|+..++.+++++|+++|+++ +..+..|.+|-
T Consensus        71 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence            7788999999999999999999999999887 67777777763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=1.8e-19  Score=113.31  Aligned_cols=90  Identities=29%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc
Q 037245           85 HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI  164 (215)
Q Consensus        85 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  164 (215)
                      .+.+|.||||+|+..|+.+++++|+++|+++            +..|..|+||||+|+..++.+++++|+++|+++ +.+
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~   86 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV------------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQ   86 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccc
Confidence            3445555666666666666666666555442            234555566666666666666666666655554 455


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHH
Q 037245          165 NKAEQTPLAIAIDSSLTDIACFI  187 (215)
Q Consensus       165 ~~~~~t~l~~a~~~~~~~~~~~L  187 (215)
                      +..|.||||+|+..++.+++++|
T Consensus        87 d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           87 DKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHh
Confidence            55566666666666666665554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=5.5e-19  Score=111.07  Aligned_cols=88  Identities=19%  Similarity=0.379  Sum_probs=82.0

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAAR   98 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~   98 (215)
                      ..+.++||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|+ ..+++++.++..|.||||+|+.
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccccCCCcHHHHHHH
Confidence            44566799999999999999999999998 889999999999999999999999999 5578899999999999999999


Q ss_pred             hCCHHHHHHH
Q 037245           99 VGDPAIVSTI  108 (215)
Q Consensus        99 ~~~~~~~~~L  108 (215)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            9999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-04

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 35/176 (19%)

Query: 50  TMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK---------HNLKGETPLHIAARVG 100
                G T    A  +   K +  + ++  ++  +             G T L  AA  G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 101 DPAIVSTILNYVPAITNGT--------------------ESEPESLLR------ITDDEG 134
              ++  +L+ + A  N                      E+    LL       +  + G
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 135 NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
            TPL  AV  KH  +V+ L++++ I +   +   +T L +A++  L  IA  +  +
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 46  NIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIV 105
           N    M         ++    + + I  +L    + +     +G+TPL +A       +V
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 106 STILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             +L       N            TD +G T L  AV  K + +  +L K+
Sbjct: 236 QRLLEQEHIEIN-----------DTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 30/174 (17%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
            N +L  A++  +  ++ ++L    ++  +    G TPLH A ++    IV  +L +   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 115 ---------------------ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 153
                                          + +   D  G T    A        ++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 154 VKK---------DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHR 198
            K+          +     + K   T L  A +    ++   ++D+    ++  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
           E N  L  AV+N+  ++V+ L++          +   TPL  A+  S  DI   ++  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 31/263 (11%), Positives = 73/263 (27%), Gaps = 71/263 (26%)

Query: 22  DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEIL------ 75
           +H L+  ++  D   ++ +     N+       G T LH A++     ++  +L      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 76  --------------------------RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
                                       + + + + +  G T    AA  G    +  + 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 110 NYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI----- 164
                       + +         G T L +A    H  V+++L+ +    +        
Sbjct: 126 KRGA--NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 165 --------------------------------NKAEQTPLAIAIDSSLTDIACFIIDQRP 192
                                            +  +TPL +A++     +   +++Q  
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 193 DSLDHRLPEELTLLHSAVMRQNY 215
             ++    +  T L  AV  +  
Sbjct: 244 IEINDTDSDGKTALLLAVELKLK 266

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 87  LKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 146
           ++    L  A +  D  +V  +L     +               ++ G TPLHNAV+   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVN-----------FQEEEGGWTPLHNAVQMSR 51

Query: 147 ENVVRM 152
           E++V +
Sbjct: 52  EDIVEL 57

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 91  TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
           TPLH+A+ +G   IV  +L        G          +++ +  TPLH A R  H  V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ------RGAS------PNVSNVKVETPLHMAARAGHTEVA 49

Query: 151 RMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
           + L++  +  +    K +QTPL  A     T++   +++   +
Sbjct: 50  KYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 24/175 (13%)

Query: 54  RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
           +  T LHMA R  + +V  + L Q  + +       +TPLH AAR+G   +V  +L    
Sbjct: 32  KVETPLHMAARAGHTEVA-KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 114 AITNGTES---------------------EPESLLRITDDEGNTPLHNAVRNKHENVVRM 152
                T +                     E E+       +G TPLH A +     V  +
Sbjct: 91  NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 150

Query: 153 LVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLH 207
           L+++D        K   TPL +A+  +  DI   ++ +             T LH
Sbjct: 151 LLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLH 203

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 9e-10
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 57  TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
           T LH+A    +  ++ + L Q+ +     N+K ETPLH+AAR G   +   +L       
Sbjct: 2   TPLHVASFMGHLPIV-KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ------ 54

Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN 165
           N  +      +     +  TPLH A R  H N+V++L++ +  P     
Sbjct: 55  NKAK------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 97

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 14/184 (7%)

Query: 1   MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLH 60
             E      +        +      L++  +    ++  +    Q   +  +  G T LH
Sbjct: 210 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 269

Query: 61  MAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTE 120
           +  +   H  + ++L +   ++      G TPLH+A+  G+  +V  +L +   +     
Sbjct: 270 LVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---- 324

Query: 121 SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL 180
                        G +PLH A +  H ++V +L+K        ++    TPLAIA     
Sbjct: 325 --------AKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGY 375

Query: 181 TDIA 184
             + 
Sbjct: 376 ISVT 379

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 26/186 (13%)

Query: 44  MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA 103
            +   + M+ +G T LH+A ++   +V  E+L ++D+        G TPLH+A    +  
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 104 IVSTILNYVPAITNGTESEPESLLRI----------------------TDDEGNTPLHNA 141
           IV  +L       +       + L I                         +G TPLH A
Sbjct: 180 IVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

Query: 142 VRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPE 201
            +  H  +V + +   +      NK+  TPL +        +A  +I      +D     
Sbjct: 239 AQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRM 296

Query: 202 ELTLLH 207
             T LH
Sbjct: 297 GYTPLH 302

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 44  MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPA 103
            Q   +  +  G + LH A +  +  ++  +L +  +   + +  G TPL IA R+G  +
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 377

Query: 104 IVSTILNYVPAITNGTESEPESL 126
           +   +       +    S+   +
Sbjct: 378 VTDVLKVVTDETSFVLVSDKHRM 400

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.7 bits (135), Expect = 2e-10
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 53  PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV 112
            +G T LH A +  N  ++  ++ ++ S   K +  G+TP+ +AA+ G   +V  ++   
Sbjct: 185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 113 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
            ++               D   +T    A  N H N+V +  +
Sbjct: 245 ASVE------------AVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 5e-06
 Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 28  VLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL 87
           +L             R       +         +A      +   ++     +       
Sbjct: 126 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 185

Query: 88  KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 147
           KG T LH AA+V +  IV  ++    +  +             D++G TP+  A +    
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----------KQDEDGKTPIMLAAQEGRI 234

Query: 148 NVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
            VV  L+++    +  ++  + T   +A  ++  +I 
Sbjct: 235 EVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 57  TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
           + + +         I E + ++   +        T LH  A          ++ +     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRM 152
               ++        D + NTPL  AV  +   +V  
Sbjct: 61  IAAGADVN----AMDCDENTPLMLAVLARRRRLVAY 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 25  LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
           L    +  +   ++ + G   +        G T + +A +    +V+   L QQ + +  
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV-MYLIQQGASVEA 249

Query: 85  HNLKGETPLHIAARVGDPAIVSTILNY 111
            +    T   +A       IV      
Sbjct: 250 VDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 14/73 (19%)

Query: 90  ETPLHIA-ARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           E+P+ +     G  AI   I               ES+  I      T LH    N    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-------------ESVNIIDPRHNRTVLHWIASNSSAE 47

Query: 149 VVRMLVKKDRIPL 161
               L+  +    
Sbjct: 48  KSEDLIVHEAKEC 60

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
              +G T LH A +  +  +V+ LV +        ++  +TP+ +A      ++  ++I 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 190 QRPDSLDHRLPEELTLLHSAVMRQN 214
           Q    ++     + T    A    +
Sbjct: 243 QGAS-VEAVDATDHTARQLAQANNH 266

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.6 bits (125), Expect = 6e-09
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 82  LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA 141
             K  +K E    +AA  G  + + T+   +           + ++++   E       A
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLL---------TSDEIVKVIQAENYQAFRLA 133

Query: 142 VRNKHENVVRMLVKKDRIP-LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDH 197
             N H +V+  L +      +  I         +A ++    +   + +  P     
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 14/144 (9%)

Query: 54  RGNTVLHMAIRFRNHKVIP--EILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
           +   +  +A        +    +L   D +++    +      +AA  G   +++ +   
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC-- 146

Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE--Q 169
                   E  P  ++ +   E       A  N H +V+  L +        + +AE   
Sbjct: 147 --------ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 198

Query: 170 TPLAIAIDSSLTDIACFIIDQRPD 193
                A+     ++  F++D    
Sbjct: 199 AFRWAAVGRGHHNVINFLLDCPVM 222

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 17/164 (10%), Positives = 36/164 (21%), Gaps = 23/164 (14%)

Query: 41  AGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG 100
               +      +         A+   +H VI        + L    +            G
Sbjct: 183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVI--------NFLLDCPVMLAYAEIHEFEYG 234

Query: 101 DPAIVSTILNYVP-----------AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 149
           +  +   I  +V            +  +G          +        L         + 
Sbjct: 235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 294

Query: 150 VRMLVK----KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
           +R L+     K   P   I       L +A+          ++ 
Sbjct: 295 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 11/123 (8%), Positives = 29/123 (23%), Gaps = 3/123 (2%)

Query: 73  EILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDD 132
             +   +  L   + K    + +        +   +  Y  A  N    +  S       
Sbjct: 30  HFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY-AHYNRNAKQLWSDAHKKGI 88

Query: 133 EGNTPLHNAVRNKHENVVRMLVK--KDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ 190
           +       A      + +  L         +  I         +A ++    +   + + 
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 191 RPD 193
            P 
Sbjct: 149 APT 151

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 6e-08
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G+T LH+A        +  +L +         S     L + +D G T LH A      +
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGF---------SAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
            V  L       L            +A        AC ++  RP 
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPS 103

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKK--DRIPLGYINKAEQTPLAIAI 176
            ++G+T LH AV ++HE  +  L+        L   N   QT L +A 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 12/156 (7%)

Query: 1   MTEFGTDYKEPTMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLH 60
                +D          P T         +   E++  P     +      +  G+T LH
Sbjct: 104 HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

Query: 61  MAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTE 120
           +A+  ++ +++  +      L +     G TPLH+A      +++  +L      T    
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT---- 219

Query: 121 SEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
                        G TPL +A+   +  + R+L   
Sbjct: 220 --------ARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 47  IFSTMSPRGNTVLHMAIRFRNHKVIPEILRQ--QDSLLRKHNLKGETPLHIAARVGDPAI 104
           +F  ++  G+T LH+A+  ++   +  +L        L   N  G+T LH+AA +G+ + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
           V  +      +               +  G+T LH A R +      +L++ 
Sbjct: 61  VEKLYAAGAGVLV------------AERGGHTALHLACRVRAHTCACVLLQP 100

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T    A ++    ++  I+++Q+  ++    + E+  +        +I+  +      
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD----- 243

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
                +    ++L   D  G+T L+ A R  + ++V  L+          NK+   P+  
Sbjct: 244 ----LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDF 298

Query: 175 AI 176
             
Sbjct: 299 GA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV-- 112
           GNT LH      N +++ + L +  S     +  GE+ L  A +  +     T    +  
Sbjct: 107 GNTPLHWLTSIANLELV-KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 113 --PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQT 170
             P +          L  I    G T    A +   + ++  +VKK   P+      +++
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 171 PLAIAIDSSLTDIACFIIDQRPDS--LDHRLPEELTLLHSAVMRQN 214
                       I   +  +   +  L+ +     T L+ A    N
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 4/145 (2%)

Query: 74  ILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE 133
           +  +   +    N                    +  + +  + +   +   +L    D+ 
Sbjct: 47  LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEH 106

Query: 134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFI---IDQ 190
           GNTPLH      +  +V+ LVK       Y +   ++ L  A+ S     +      +D 
Sbjct: 107 GNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 191 RPDSLDHRLPEELTLLHSAVMRQNY 215
               L        T+LH  ++    
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGM 190

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 7/161 (4%)

Query: 56  NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLK---GETPLHIAARVGDPAIVSTILNYV 112
            + L  A++  N+          D L     L+     T LH           S    Y 
Sbjct: 141 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 200

Query: 113 PAITNGT-ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG--YINKAEQ 169
             I  G    +    ++   +E  +  ++    + ++++  L  K  I       +    
Sbjct: 201 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 260

Query: 170 TPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV 210
           T L IA       I   ++D   D         L  +    
Sbjct: 261 TCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 3e-07
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 11/66 (16%)

Query: 91  TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
            PLH A    +   V  +L+  P++               D +G  PLH +V  +   + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLL-----------QKDQDGRIPLHWSVSFQAHEIT 50

Query: 151 RMLVKK 156
             L+ K
Sbjct: 51  SFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 4e-06
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 56  NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP 102
           N  LH A        + E+L  + SLL + +  G  PLH +      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
               LH A    + K+I  +     S +   + +G TPL  A   G       ++    A
Sbjct: 138 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 197

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             +           + D++G      A+   +E V +  +  
Sbjct: 198 EYD-----------LVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 14/135 (10%)

Query: 60  HMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGT 119
                 +    + + L +  + +R  +   + PLH                    +    
Sbjct: 109 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR-----------AASVGSLKLIELL 157

Query: 120 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS 179
               +S +   D +G TPL +A+   H +   +LV+K       ++        +A++  
Sbjct: 158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE- 216

Query: 180 LTDIACFIIDQRPDS 194
              +  F ++   D+
Sbjct: 217 --QVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-05
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 135 NTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI 176
           N PLH A        V+ L+      L   ++  + PL  ++
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV 42

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 7e-07
 Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 22/138 (15%)

Query: 56  NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAI 115
           N ++         + + E +    SL  + +    T LH A   G   IV  +L     +
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 116 TNGTESEPESL---------------------LRITDDEGNTPLHNAVRNKHENVVRMLV 154
            +  ++    L                     +   +  G TPLH A       +  ML+
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 155 KKDRIPLGYINKAEQTPL 172
           +         +  E T +
Sbjct: 124 EGG-ANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A   +N   I  +L +  +     +    T +H AA  G+  ++  +L Y  +
Sbjct: 103 GCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS 161

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
                         I D EGNTPLH A   +     ++LV +    +   NK E+TPL +
Sbjct: 162 T------------NIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQV 208

Query: 175 A 175
           A
Sbjct: 209 A 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
             T +H     + +  +  IL    +     + +G TPLH+A           +++    
Sbjct: 136 EATAMHR-AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS---- 190

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
              G        + I + E  TPL  A +     +++ +V+
Sbjct: 191 --QGAS------IYIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 14/150 (9%)

Query: 60  HMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGT 119
                      I + L  + + +   N  G TPLH AA      I   +L          
Sbjct: 74  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--- 130

Query: 120 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS 179
                      D    T +H A    +  ++ +L    +      +    TPL +A D  
Sbjct: 131 ---------AKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACDEE 180

Query: 180 LTDIACFIIDQRPDSLDHRLPEELTLLHSA 209
             + A  ++ Q    +     EE T L  A
Sbjct: 181 RVEEAKLLVSQGAS-IYIENKEEKTPLQVA 209

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 7e-07
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 13/103 (12%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH+A   + +  + ++L Q    +   +  G TPLH AA  G       ++  +  
Sbjct: 199 GGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 157
           +               +  G T    A  +    +  +  K++
Sbjct: 258 ME------------AVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 60  HMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGT 119
                    +   + L        +H   G T LH+AA  G   ++  +L       N  
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVN-- 226

Query: 120 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
                    I D +G TPLH A     E   R+LV+     +  +NK  QT   +A
Sbjct: 227 ---------IKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 25  LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
           L     +G    ++ +     ++ +     G T LH A  +   +    IL +    +  
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEAC-RILVENLCDMEA 260

Query: 85  HNLKGETPLHIAAR 98
            N  G+T   +A  
Sbjct: 261 VNKVGQTAFDVADE 274

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 21  MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
               L   +    +  ++ +  R  +I +     G + L  A+   N   + ++L Q  +
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGA 168

Query: 81  LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHN 140
            +      G + LH A+  G   +V T++       +G +        + +   +TPL  
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVR------SGAD------SSLKNCHNDTPLMV 216

Query: 141 AVRNKHENVVR 151
           A   +  +++R
Sbjct: 217 ARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G+TPLHIA   G+   V  ++N       G E      L I ++   TPLH AV     +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRE------LDIYNNLRQTPLHLAVITTLPS 54

Query: 149 VVRM 152
           VVR+
Sbjct: 55  VVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-05
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 132 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKA---EQTPLAIA 175
           ++G+TPLH AV   +   V  LV   +     ++      QTPL +A
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 9e-06
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 89  GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
           G++ LH+A    + A+   ++  V    +         L   ++   TPLH AV      
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQV--KGDLAF------LNFQNNLQQTPLHLAVITNQPE 53

Query: 149 VVRM 152
           +   
Sbjct: 54  IAEA 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 60  HMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGT 119
           H+A       ++  ++     +  +    G T LH+A  + +P +VS +L     +    
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--- 172

Query: 120 ESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE 168
                        +G +P           + + L +     L  + ++E
Sbjct: 173 ---------RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 9e-04
 Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN---KAEQTPLAIA 175
           +G++ LH A+ ++ + +   ++++ +  L ++N     +QTPL +A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 55 GNTVLHMAIRFRNHKVIPEILRQ---QDSLLRKHNLKGETPLHIAAR 98
          G++ LH+AI      +  E++RQ     + L   N   +TPLH+A  
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 29/127 (22%)

Query: 59  LHMAIRFRNHKVIPEILRQ-----QDSLLRKHNLKGETPLHIAARVGDPAIVSTI----- 108
           L  A++ R+   + +         +   L   +   ET LH+A R  D   +  +     
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 109 -------------------LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 149
                                   A         ++ + I ++ G TPL  A R KHE+ 
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 150 VRMLVKK 156
             +L + 
Sbjct: 130 EELLTQA 136

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 9e-05
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKK 156
             + +G+T    A       VV ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 55  GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
           G T LH A    N + +  +L    +   + + K ETPL +AAR G       +L+    
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFAN 181

Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 153
                         ITD     P   A    H ++VR+L
Sbjct: 182 RE------------ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 130 TDDEGNTPLHNAVRNKHENVVRML 153
            D  G T LH A R    +  + L
Sbjct: 19  MDKTGETSLHLAARFARADAAKRL 42

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 5e-04
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 127 LRITDDEGNTPLHNAVRNKHENVVRML 153
           +        T    ++ N +E++  +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 8e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLV 154
           L   D  G TPL  A++   +++V +L 
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-39  Score=231.86  Aligned_cols=194  Identities=21%  Similarity=0.242  Sum_probs=168.7

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCc--ccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNI--FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      ..+.+|||+|++.|+.+++++|+++++++  .+.++..|.||||+|+..|+.+++++|+ ..+++++.++.+|.||||+|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccc-cccccccccccccchhhhhh
Confidence            34566799999999999999999998763  2677889999999999999999999999 56788999999999999999


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCC-----------------------------------ccccccccCCCCCcHHHHH
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESE-----------------------------------PESLLRITDDEGNTPLHNA  141 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~a  141 (215)
                      +..++.++++.|++.+..........                                   ....++.++..|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            99999999999988764321111000                                   3334567889999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          142 VRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       142 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +..++.+++++|+++++......+..|.||||+|++.++.+++++|+++| ++++.+|..|.||||+|+.+|+
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSC
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999886667788999999999999999999999999 9999999999999999999886

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2e-35  Score=215.59  Aligned_cols=188  Identities=17%  Similarity=0.146  Sum_probs=165.8

Q ss_pred             hccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHh
Q 037245           20 TMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARV   99 (215)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~   99 (215)
                      ...++|+.||..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++ .+......+..+.+||+.++..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~-~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeecc-cccccccccccccccccccccc
Confidence            3457899999999999999999999998 9999999999999999999999999994 5566777888999999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCC------------------------------------------------ccccccccC
Q 037245          100 GDPAIVSTILNYVPAITNGTESE------------------------------------------------PESLLRITD  131 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~  131 (215)
                      ++.++++.|+++|+.........                                                ........+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            99999999999987654332222                                                011123456


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHH
Q 037245          132 DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVM  211 (215)
Q Consensus       132 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~  211 (215)
                      ..|.||||.|+..++.+++++|++.|+++ +.++..|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|++
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            78999999999999999999999999987 788999999999999999999999999999 9999999999999999975

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=204.97  Aligned_cols=174  Identities=20%  Similarity=0.206  Sum_probs=157.5

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||+|+..|+.+++++++..+... ...+..+.++++.++..++.+++++|+ ..+.+++.++..|.||||+|+..|
T Consensus        37 G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll-~~~~d~~~~d~~g~tpL~~A~~~~  114 (223)
T d1uoha_          37 SRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKN  114 (223)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHHh-ccCceeEeeCCCCCchhhHHHHcC
Confidence            345699999999999999998888877 667778888999999999999999998 455778889999999999999999


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      +.+++++|+++|+++            +..+..|.||||+|+..++.+++++|+..+.++ +..+..|+||||.|+..|+
T Consensus       115 ~~e~~~~Ll~~g~d~------------~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         115 RHEIAVMLLEGGANP------------DAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             CHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCC------------CCcCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCc
Confidence            999999999999774            367889999999999999999999999999886 7899999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          181 TDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       181 ~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      .+++++|+++| ++++.+|..|+||||+|.
T Consensus       182 ~~~v~~LL~~G-ad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         182 VEEAKLLVSQG-ASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHCC
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCCHHHHHH
Confidence            99999999999 999999999999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4e-35  Score=212.42  Aligned_cols=201  Identities=16%  Similarity=0.164  Sum_probs=166.1

Q ss_pred             CCCCCcchhhccHHHHHHHHcCChHHHHHHH--------hcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccc
Q 037245           11 PTMDQELPATMDHELLNVLRRGDEHQIRPIA--------GRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLL   82 (215)
Q Consensus        11 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll--------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~   82 (215)
                      ..++..+...+.+|||+|+..|+.++++.|+        +.|+++ +.+|..|.||||+|+..|+.+++++|+ +.++++
T Consensus        23 ~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll-~~Gad~  100 (277)
T d2fo1e1          23 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLM-KAGADP  100 (277)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCS
T ss_pred             cCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccccccccccc-cccccc
Confidence            3444445444667899999999999888774        567888 889999999999999999999999999 567889


Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHhhcccc---cCCCCCC--------------------------------ccccc
Q 037245           83 RKHNLKGETPLHIAARVGDPAIVSTILNYVPAI---TNGTESE--------------------------------PESLL  127 (215)
Q Consensus        83 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~--------------------------------~~~~~  127 (215)
                      +.++..|.|||+.|+..++.+++..+...+...   .......                                .....
T Consensus       101 n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (277)
T d2fo1e1         101 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK  180 (277)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred             ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccc
Confidence            999999999999999999999999887754221   1100000                                11223


Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHH
Q 037245          128 RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLH  207 (215)
Q Consensus       128 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~  207 (215)
                      +..+..|.|+||.++..++.+++++++.......+.++..|+||||+|++.|+.+++++|+++| ++++.+|..|.||||
T Consensus       181 ~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~  259 (277)
T d2fo1e1         181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQ  259 (277)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHH
T ss_pred             cccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHH
Confidence            4566789999999999999999998776655555788999999999999999999999999999 999999999999999


Q ss_pred             HHHHhCC
Q 037245          208 SAVMRQN  214 (215)
Q Consensus       208 ~A~~~~~  214 (215)
                      +|+++|+
T Consensus       260 ~A~~~~~  266 (277)
T d2fo1e1         260 LAQANNH  266 (277)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=220.67  Aligned_cols=189  Identities=23%  Similarity=0.242  Sum_probs=142.8

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      ||||.||..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+ +.+++++.++..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4699999999999999999999888 888888999999999999999999998 45677888888888888888888777


Q ss_pred             HHHHHHHhhcccccCCCCCC------------------------------------------------------------
Q 037245          103 AIVSTILNYVPAITNGTESE------------------------------------------------------------  122 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~------------------------------------------------------------  122 (215)
                      +++++|+..+++........                                                            
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            77666665443211100000                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 037245          123 --------------------------------------------------------------------------------  122 (215)
Q Consensus       123 --------------------------------------------------------------------------------  122 (215)
                                                                                                      
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence                                                                                            


Q ss_pred             -------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC-----------------------------
Q 037245          123 -------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-----------------------------  160 (215)
Q Consensus       123 -------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-----------------------------  160 (215)
                                   .....+..+..|.+|++.++..++.+++++|+++|+++                             
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             HhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc
Confidence                         00011223445555666666666666666666554331                             


Q ss_pred             ---ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          161 ---LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       161 ---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                         ++.++..|+||||+|++.|+.++|++|+++| ++++.+|.+|.||||+|+++|+
T Consensus       320 g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTC
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCC
Confidence               2567889999999999999999999999999 9999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=204.65  Aligned_cols=188  Identities=18%  Similarity=0.241  Sum_probs=158.2

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccc---cccCCCCCCHHHHHHHh
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLL---RKHNLKGETPLHIAARV   99 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~---~~~~~~g~t~l~~a~~~   99 (215)
                      +|||+||..|+.++++.|+...+...+.+|.+|.||||+|+..|+.+++++|++ .++++   +..+..|.+|+|+++..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-TCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhh-hhccccccccccccccccccccccc
Confidence            589999999999999999987655558899999999999999999999999995 44444   34667889999999999


Q ss_pred             CCHHHHHHHHhhcccccCCCCCC-----------------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 037245          100 GDPAIVSTILNYVPAITNGTESE-----------------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK  156 (215)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  156 (215)
                      +..++++.++..+..........                       .+...+..+..|+||||+|+..++.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            99999888888776543322211                       2223456788999999999999999999999999


Q ss_pred             CCCCccccccCCCcHHHHHHHcCCHHHHHHHHHh-CCCCccccCccCccHHHHHHHh
Q 037245          157 DRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQ-RPDSLDHRLPEELTLLHSAVMR  212 (215)
Q Consensus       157 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~  212 (215)
                      +....+.++..|+||||+|+..++.+++++|+++ | ++++.+|..|.||||+|+..
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g-ad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCCCTTSCCTGGGCSCH
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcC-CCCCCcCCCCCCHHHHHhhH
Confidence            8776688999999999999999999999999975 7 99999999999999998643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=206.30  Aligned_cols=185  Identities=19%  Similarity=0.199  Sum_probs=158.0

Q ss_pred             ccHHHHHHHHcCChHHH----HHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           21 MDHELLNVLRRGDEHQI----RPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~----~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      +.+|||+|+..|+.+++    +.+...+.++ +.+|..|.||||+|+..++.+++++|+ +.+++++.++..|.|||+.+
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~-~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccc-cccccccccccccccccccc
Confidence            45679999999997554    4555677787 889999999999999999999999999 66788899999999999999


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHH
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI  176 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~  176 (215)
                      +..++.++++.|++.+.....      ..........|.||+|.|+..++.+++++++..++......+.+|.||||.|+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~  153 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHL------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV  153 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccchhhhhcccccc------cccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc
Confidence            999999999999998755332      12234556678999999999999999999999998875555678999999999


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          177 DSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       177 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +.|+.+++++|+++| ++++.++..|.||||+|+.+++
T Consensus       154 ~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         154 DLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             HTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSC
T ss_pred             ccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCC
Confidence            999999999999999 9999999999999999998775

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-33  Score=196.35  Aligned_cols=177  Identities=20%  Similarity=0.251  Sum_probs=161.5

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      ..|+.++..|+.+.++.++...+...+..|..|+||||+|+..|+.+++++++. ........+..+.++++.++..++.
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccc-ccccccccccccccccccccccccc
Confidence            368889999999999888877665558999999999999999999999999995 4555666777899999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHH
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTD  182 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  182 (215)
                      +++++|+++++++            +..|..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+|+..+..+
T Consensus        84 ~i~~~Ll~~~~d~------------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~  150 (223)
T d1uoha_          84 EIVKALLGKGAQV------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLK  150 (223)
T ss_dssp             HHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred             chhHHHhccCcee------------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcc
Confidence            9999999999774            468999999999999999999999999999987 788999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          183 IACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       183 ~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++++|++.+ .+++.++..|.||||+|+.+|+
T Consensus       151 ~~~~L~~~~-~~i~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         151 MIHILLYYK-ASTNIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             HHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTC
T ss_pred             hhhhhcccc-ceeeeccCCCCceeccccccCc
Confidence            999999999 9999999999999999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-32  Score=196.58  Aligned_cols=165  Identities=22%  Similarity=0.264  Sum_probs=144.9

Q ss_pred             CcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhc----------------
Q 037245           15 QELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQ----------------   78 (215)
Q Consensus        15 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~----------------   78 (215)
                      ..+..+. +|||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++..                
T Consensus        40 ~~~~~g~-TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  117 (255)
T d1oy3d_          40 LQNDLGQ-TALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (255)
T ss_dssp             CCCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             CcCCCCC-CccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHh
Confidence            3333443 5699999999999999999999999 899999999999999999999998886421                


Q ss_pred             ------------------------------cccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCcccccc
Q 037245           79 ------------------------------DSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR  128 (215)
Q Consensus        79 ------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  128 (215)
                                                    ...++.++..|.||||+|+..++.+++++|++++++...           
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~-----------  186 (255)
T d1oy3d_         118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-----------  186 (255)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-----------
T ss_pred             hhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccc-----------
Confidence                                          122456788899999999999999999999999977543           


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 037245          129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDS  194 (215)
Q Consensus       129 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  194 (215)
                      ..+..|.||||+|+..++.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++| ++
T Consensus       187 ~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G-a~  250 (255)
T d1oy3d_         187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHG-AP  250 (255)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CC
T ss_pred             cccccccccccccccccHHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CC
Confidence            45678999999999999999999999999887 789999999999999999999999999999 64

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-32  Score=189.94  Aligned_cols=190  Identities=16%  Similarity=0.161  Sum_probs=161.5

Q ss_pred             ccHHHHHHHHcCChHHHHHHHh----cccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHH
Q 037245           21 MDHELLNVLRRGDEHQIRPIAG----RMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIA   96 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a   96 (215)
                      +.||||+|+..|+.++++.|++    .|.++ +..|..|.||||+|+..|+.+++++|+ ..++..+.....+.++++.|
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccc-cccccccccccccccccccc
Confidence            5668999999999999999886    67788 889999999999999999999999999 56777888889999999999


Q ss_pred             HHhCCHHHHHHHHhhcccccCCCCCC--------------------------ccccccccCCCCCcHHHHHHhcCCHHHH
Q 037245           97 ARVGDPAIVSTILNYVPAITNGTESE--------------------------PESLLRITDDEGNTPLHNAVRNKHENVV  150 (215)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~  150 (215)
                      ...++.++++.+..............                          ...........+.++++.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            99999999988877654322111111                          0011123456788999999999999999


Q ss_pred             HHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          151 RMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       151 ~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +++++.+... +.++..|.||||+|+..|+.+++++|+++| ++++.+|.+|.||||+|+++|+
T Consensus       161 ~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         161 QLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCC
Confidence            9999999886 678999999999999999999999999999 9999999999999999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-31  Score=178.14  Aligned_cols=154  Identities=25%  Similarity=0.343  Sum_probs=142.9

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      ++||.|+..|+.+++++|+++|+++ +..|..|.||||+|+ .++.+++++|+ ..+.+++.++..+.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccc-ccccccccccccCccccccccccccc
Confidence            5699999999999999999999998 999999999999886 78999999999 56677889999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHH
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTD  182 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  182 (215)
                      +.++.|++++.++            +..+..|.+|+++|+..++.+++++|+++++...+.++..|.||||+|++.++.+
T Consensus        80 ~~~~~l~~~~~~~------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_          80 DTLQTLLEFQADV------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             HHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccccccc------------cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence            9999999998763            3678899999999999999999999999998666889999999999999999999


Q ss_pred             HHHHHHHhC
Q 037245          183 IACFIIDQR  191 (215)
Q Consensus       183 ~~~~Ll~~g  191 (215)
                      ++++|+++|
T Consensus       148 iv~~Ll~~G  156 (156)
T d1ihba_         148 VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=188.16  Aligned_cols=180  Identities=18%  Similarity=0.241  Sum_probs=129.2

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCccccc-CCCCchHHHHHHHcCCcchHHHHHHhcccc------------------
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTM-SPRGNTVLHMAIRFRNHKVIPEILRQQDSL------------------   81 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~------------------   81 (215)
                      ..++|+.|++.|+.+++++|+++|+++ +.+ +..|.||||+|+..|+.+++++|++.....                  
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~di-n~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            356799999999999999999999998 544 567999999999999999999998632100                  


Q ss_pred             ---------------------------------------------------------ccccCCCCCCHHHHHHHhCCHHH
Q 037245           82 ---------------------------------------------------------LRKHNLKGETPLHIAARVGDPAI  104 (215)
Q Consensus        82 ---------------------------------------------------------~~~~~~~g~t~l~~a~~~~~~~~  104 (215)
                                                                               .......|.||||+|++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                     11233458899999999999999


Q ss_pred             HHHHHhh-cccccCCCCCCccccccccCCCCCcHHHHHHhcC----CHHHHHHHHHcCCCCccccccCCCcHHHHHHHcC
Q 037245          105 VSTILNY-VPAITNGTESEPESLLRITDDEGNTPLHNAVRNK----HENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSS  179 (215)
Q Consensus       105 ~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~  179 (215)
                      +++|+++ |+++            +..+..+.+++..+...+    ...++++|+++|+++ +.++..|.||||.|+..+
T Consensus       164 ~~~Ll~~~~~~i------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~  230 (285)
T d1wdya_         164 LKILLDEMGADV------------NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHHHTSCCCT------------TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHhccCCCc------------ccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcC
Confidence            9999975 4443            345556666555443322    245667777776665 556666777777777777


Q ss_pred             CHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          180 LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       180 ~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +.+++++|++++..+++.+|.+|.||||+|+++|+
T Consensus       231 ~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            77777777765336777777777777777776665

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-30  Score=171.08  Aligned_cols=150  Identities=23%  Similarity=0.381  Sum_probs=135.0

Q ss_pred             HHHHHHHcCChHHHHHHHhc-ccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           24 ELLNVLRRGDEHQIRPIAGR-MQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      .|+.|+..|+.++++.|+.+ +.++ +..|..|.||||+|+ .++.+++++|+ ..+.+++..+..|.+|++.++..++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSC-TTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCccccccc-ccccccccccc-cccccccccccccccccccccccccc
Confidence            49999999999999999986 5566 889999999999887 48899999999 45667888899999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHH
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTD  182 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  182 (215)
                      +++++++++++++            +.++..|+||||+|+..|+.+++++|+ .++++ +.++..|+||||+|++.|+.+
T Consensus        82 ~~~~~~l~~~~~~------------n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          82 DTLKVLVEHGADV------------NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHH
T ss_pred             ccccccccccccc------------ccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHH
Confidence            9999999998773            467889999999999999999999887 56665 789999999999999999999


Q ss_pred             HHHHHHHh
Q 037245          183 IACFIIDQ  190 (215)
Q Consensus       183 ~~~~Ll~~  190 (215)
                      ++++|+++
T Consensus       148 iv~~Ll~h  155 (156)
T d1bd8a_         148 LVDILQGH  155 (156)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2.6e-29  Score=174.53  Aligned_cols=179  Identities=19%  Similarity=0.213  Sum_probs=140.5

Q ss_pred             ccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhC
Q 037245           21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG  100 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  100 (215)
                      +.+|||+||..|+.+++++|+..++++ +..+..+.++++.++..++.....................+.++.+.+....
T Consensus        23 G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (209)
T d1ot8a_          23 GETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA  101 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444577777777777777777777766 6666667777777776666665555543333333334455666667666667


Q ss_pred             CHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCC
Q 037245          101 DPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSL  180 (215)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~  180 (215)
                      .....+.|..++++            ++..+..|+|||+.++..+..++++.++..+..+ +..+..|.||||.|+..|+
T Consensus       102 ~~~~~~~L~~~~~~------------~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_         102 IEGMVEDLITADAD------------INAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             CTTHHHHHHHTTCC------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             chhhhhhhhhhccc------------ccccCCCCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccH
Confidence            77777777777655            3467889999999999999999999999999887 7889999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          181 TDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       181 ~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .+++++|+++| ++++.+|..|.||||+|+++|+
T Consensus       169 ~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         169 YEASKALLDNF-ANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCC
Confidence            99999999999 9999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-29  Score=167.05  Aligned_cols=150  Identities=25%  Similarity=0.329  Sum_probs=132.2

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .+||+.|++.|+.++++.|+++|+++ + .+..|.||||+|+..++.+++..++ .........+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            46799999999999999999999876 5 6889999999999999999998888 4454555667788899999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .++++.+..++++..            .++..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.
T Consensus        80 ~~~~~~l~~~~~~~~------------~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          80 ANIVEVLLKHGADVN------------AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHHHHTTTCCTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             ceeeecccccCCccc------------cccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCH
Confidence            999999999887643            57889999999999999999999999999987 78899999999999999999


Q ss_pred             HHHHHH
Q 037245          182 DIACFI  187 (215)
Q Consensus       182 ~~~~~L  187 (215)
                      +++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.7e-29  Score=174.20  Aligned_cols=158  Identities=22%  Similarity=0.224  Sum_probs=137.8

Q ss_pred             chHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC-------------
Q 037245           56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE-------------  122 (215)
Q Consensus        56 ~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------  122 (215)
                      .+|||+||..|+.++++.|++..+..++.+|.+|.||||+|+..|+.+++++|+++|+++.......             
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4799999999999999999988888999999999999999999999999999999998764221111             


Q ss_pred             -------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 037245          123 -------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID  189 (215)
Q Consensus       123 -------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  189 (215)
                                   ........+..+.++++.++..++.+++++|+..+... ...+..|+||||+|+..++.++++.|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccc
Confidence                         11112345567889999999999999999999998887 6788999999999999999999999999


Q ss_pred             hCCCCccccCccCccHHHHHHHhCC
Q 037245          190 QRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       190 ~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .++.+++.++..|.||||+|+.+|+
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccCCchhhhccccc
Confidence            9878999999999999999999886

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=166.46  Aligned_cols=143  Identities=21%  Similarity=0.289  Sum_probs=131.1

Q ss_pred             chHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCC
Q 037245           56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGN  135 (215)
Q Consensus        56 ~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (215)
                      ...|+.||..|+.++|+.|+++.+.+++.+|..|.||||+|+ .++.+++++|++++.++.            ..+..|.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~------------~~~~~~~   69 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN------------VQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT------------CCCTTSC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc------------ccccccc
Confidence            356999999999999999998888899999999999999987 488999999999987743            5677899


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          136 TPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       136 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +|++.++..++.+++++++++++++ +.++..|.||||+|++.|+.+++++|+ .| ++++.++..|.||||+|+++|+
T Consensus        70 ~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          70 SPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccccccccc-ccccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999886 788999999999999999999999887 67 8999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7e-29  Score=164.76  Aligned_cols=143  Identities=18%  Similarity=0.236  Sum_probs=132.8

Q ss_pred             hHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCc
Q 037245           57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNT  136 (215)
Q Consensus        57 t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (215)
                      ++||+||..|+.++|++|+ +.+.+++.+|..|.||||+|+ .++.+++++|+++|+++            +..+..+.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll-~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~------------~~~~~~~~~   68 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP------------DLKDRTGFA   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT------------TCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCcCccCCcccccccccc-ccccccccccccccccc------------ccccccCcc
Confidence            8999999999999999999 567889999999999999886 78999999999999874            367888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          137 PLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       137 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +++.++..+..+.++.++..+... +..+..|.+|+++|+..++.+++++|+++++.+++.++..|.||||+|+++|+
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            999999999999999999998886 77889999999999999999999999999977899999999999999999886

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.4e-28  Score=160.86  Aligned_cols=143  Identities=19%  Similarity=0.220  Sum_probs=129.8

Q ss_pred             chHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCC
Q 037245           56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGN  135 (215)
Q Consensus        56 ~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (215)
                      .|||+.|+..|+.+++++|++. +++++ .+..|.||||+|+..++.++++.++.......            ..+..+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~~~   68 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD------------ARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT------------CCCTTCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCcccccccccccccccccccccccccc------------ccccccc
Confidence            4899999999999999999954 55655 68899999999999999999999998875533            4566778


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          136 TPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       136 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      ++++.++.....+.+++++.++.+. +.++..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+.+|+
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCC
Confidence            8999999999999999999999887 688999999999999999999999999999 9999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-28  Score=169.98  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=145.5

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhc-----cccccccC
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQ-----DSLLRKHN   86 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~-----~~~~~~~~   86 (215)
                      .++..+.. +.+|||+|+..|+.+++++|+++|+++ +..+..|.|||+.|+..++.++++.|+...     ........
T Consensus        31 ~in~~d~~-g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          31 FLNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  108 (221)
T ss_dssp             CCCCCCTT-CCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             CcccCCCC-CCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            44545554 446699999999999999999999999 899999999999999999999999998642     22234455


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccccc
Q 037245           87 LKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINK  166 (215)
Q Consensus        87 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  166 (215)
                      ..|.||||.|+..++.+++++|+..|+.+..           ..+.+|.||||+|+..|+.+++++|+++|+++ +.++.
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~-----------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~  176 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNA-----------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTY  176 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-----------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCT
T ss_pred             cccchhhhHHhhcCChhheeeecccCccccc-----------ccccCCCCccccccccccHHHHHHHHhcCCcc-cccCC
Confidence            6789999999999999999999999977543           34567999999999999999999999999997 88999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCC
Q 037245          167 AEQTPLAIAIDSSLTDIACFIIDQRP  192 (215)
Q Consensus       167 ~~~t~l~~a~~~~~~~~~~~Ll~~g~  192 (215)
                      .|+||||+|+..++.+++++|++.+.
T Consensus       177 ~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         177 QGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             TCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999998873

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=6.6e-30  Score=190.26  Aligned_cols=184  Identities=13%  Similarity=0.063  Sum_probs=139.9

Q ss_pred             ccHHHHHHHHcCChHHHHH---HHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccC--CCCCCHHHH
Q 037245           21 MDHELLNVLRRGDEHQIRP---IAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHN--LKGETPLHI   95 (215)
Q Consensus        21 ~~~~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~--~~g~t~l~~   95 (215)
                      +.++|++|+.+|+.+++++   |+..++++ +..+..|+||||+||..|+.++|++|++ .+++++..+  .+|.||||+
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHHHHHHH
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCCChhHH
Confidence            4578999999999877765   78899998 8899999999999999999999999995 555666554  468999999


Q ss_pred             HHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcc-------------
Q 037245           96 AARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLG-------------  162 (215)
Q Consensus        96 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-------------  162 (215)
                      |+..|+.+++++|++.|+....         .+..+.++.+|++.|+..|+.+++++|++.|++...             
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~---------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEAT---------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHH---------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             HHHHhhHHHHHHHHHcCCcccc---------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            9999999999999999866321         223445567888889999999999999987643200             


Q ss_pred             -------------------cccc----------------CCCcHHHHHHHcCCHHHHHHHHHhCCC----CccccCccCc
Q 037245          163 -------------------YINK----------------AEQTPLAIAIDSSLTDIACFIIDQRPD----SLDHRLPEEL  203 (215)
Q Consensus       163 -------------------~~~~----------------~~~t~l~~a~~~~~~~~~~~Ll~~g~~----~~~~~~~~g~  203 (215)
                                         ....                .+.++++.++..+..+++++|++.+..    ..+..+.+|.
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence                               0000                113567778888899999999988722    2333456789


Q ss_pred             cHHHHHHHhCCC
Q 037245          204 TLLHSAVMRQNY  215 (215)
Q Consensus       204 t~l~~A~~~~~~  215 (215)
                      ||||+|+++|+.
T Consensus       319 T~LhlA~~~Gn~  330 (346)
T d2ajaa1         319 ELLRLALRLGNQ  330 (346)
T ss_dssp             HHHHHHHHHTCT
T ss_pred             cHHHHHHHcCcH
Confidence            999999999973

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.4e-28  Score=177.32  Aligned_cols=176  Identities=13%  Similarity=0.059  Sum_probs=120.8

Q ss_pred             hhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCC---cchHHHHHHhccccccccCCCCCCHHHH
Q 037245           19 ATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRN---HKVIPEILRQQDSLLRKHNLKGETPLHI   95 (215)
Q Consensus        19 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~ll~~~~~~~~~~~~~g~t~l~~   95 (215)
                      ..+.+|||+|+..|+.++++.|+++|+++ +.+|..|.||||.|+..++   ...+..+++.....+...|..|+||||.
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            34556799999999999999999999999 8999999999999998764   2333344433344566788999999999


Q ss_pred             HHHhCC----HH--------HHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHH-----HHHHHHcCC
Q 037245           96 AARVGD----PA--------IVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV-----VRMLVKKDR  158 (215)
Q Consensus        96 a~~~~~----~~--------~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~-----~~~ll~~~~  158 (215)
                      ++..+.    ..        ++.++.+.+....           ......+.++++.+........     +.+++... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI-----------QSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-  251 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE-----------EEC----------------CHHHHHCSHHHHHHHT-
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcch-----------hcccccccchhHHHHhcchHHHHHHHhhHHHHhcC-
Confidence            887543    22        3344555443321           1223334444444433222222     22223322 


Q ss_pred             CCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          159 IPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       159 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                        ++.+|..|+||||+|++.|+.++|++|+++| ++++++|..|.|||++|+
T Consensus       252 --in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 --LNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             --ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence              3678999999999999999999999999999 999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=3.4e-26  Score=165.07  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=136.4

Q ss_pred             CCCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhcc------------
Q 037245           12 TMDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQD------------   79 (215)
Q Consensus        12 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~------------   79 (215)
                      +++..+.. +.+|||+|+..|+.+++++|+++|+++ +.++..|.|||++|+..++.+++.++.....            
T Consensus        66 dvn~~d~~-G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          66 DVNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             CTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CccccCCC-CCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            44555544 455699999999999999999999998 8899999999999999999888776654210            


Q ss_pred             ----------------------------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccc
Q 037245           80 ----------------------------------SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPES  125 (215)
Q Consensus        80 ----------------------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  125 (215)
                                                        ...+..+..|.||||.++..++.+++++++.....           
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~-----------  212 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS-----------  212 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC-----------
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc-----------
Confidence                                              11233556789999999999999999876655422           


Q ss_pred             cccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 037245          126 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID  189 (215)
Q Consensus       126 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  189 (215)
                      ..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|++.|+.++|++|++
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-n~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            13467889999999999999999999999999987 7899999999999999999999999884

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.4e-27  Score=149.61  Aligned_cols=119  Identities=15%  Similarity=0.193  Sum_probs=78.5

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCC
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEG  134 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  134 (215)
                      +.++||+|+..|+.+++++|+ +.+.+++.++..|.||+|.|+ .|+.+++++|+++|+++.            ..+..+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~------------~~~~~~   68 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN------------CADPAT   68 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC------------CCCTTT
T ss_pred             ChhHHHHHHHCCCHHHHHHHH-HcCCccccccccccccccccc-cccccccccccccccccc------------cccccc
Confidence            345677777777777777776 345566666667777776553 566777777777766532            344444


Q ss_pred             C-cHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHH
Q 037245          135 N-TPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII  188 (215)
Q Consensus       135 ~-~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  188 (215)
                      . +|||+|+..|+.+++++|+++|+++ +.+|..|+||||+|++.|+.+++++|+
T Consensus        69 ~~~~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          69 LTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3 5777777777777777777776665 566777777777777777777777665

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1.5e-25  Score=162.82  Aligned_cols=147  Identities=20%  Similarity=0.225  Sum_probs=124.9

Q ss_pred             CCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCC
Q 037245           54 RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE  133 (215)
Q Consensus        54 ~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  133 (215)
                      .+.|+|+.||..|+.++|++|+ +.+++++.+|.+|.||||+|+..|+.+++++|++++++..            ..+..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~------------~~~~~  105 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN------------QPDNE  105 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTT
T ss_pred             CCchHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccc------------ccccc
Confidence            3569999999999999999999 5667899999999999999999999999999999997743            34556


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCC-----------------------------------------------------
Q 037245          134 GNTPLHNAVRNKHENVVRMLVKKDRIP-----------------------------------------------------  160 (215)
Q Consensus       134 ~~~~l~~a~~~~~~~~~~~ll~~~~~~-----------------------------------------------------  160 (215)
                      +.+||+.++..++.+++++|+++++..                                                     
T Consensus       106 ~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (291)
T d1s70b_         106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL  185 (291)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhh
Confidence            677777777777777777777665432                                                     


Q ss_pred             ------ccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          161 ------LGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       161 ------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                            ....+..|.||||.|+..|+.+++++|+++| ++++.++..|.||||+|+..|+
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g~TpL~~A~~~g~  244 (291)
T d1s70b_         186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGK  244 (291)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cccccccccccCCCCChhhHHHHcCChhhhcccccce-ecccccccCCCCHHHHHHHcCC
Confidence                  1124456789999999999999999999999 9999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.8e-27  Score=150.30  Aligned_cols=107  Identities=20%  Similarity=0.207  Sum_probs=100.7

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCC
Q 037245           90 ETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQ  169 (215)
Q Consensus        90 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  169 (215)
                      .|||++|++.|+.+++++|+++|+++            +..+..|+||||+|+..++.+++++|+++|+++ +.++..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~------------n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~   69 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHI   69 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC------------CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc------------cccccccccccccccccccccccccccccccee-eecccccc
Confidence            47999999999999999999999874            468889999999999999999999999999987 78999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCccccCccCccHHHHHH
Q 037245          170 TPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAV  210 (215)
Q Consensus       170 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~  210 (215)
                      ||||+|+..|+.+++++|+++| ++++.+|..|.||||+|.
T Consensus        70 tpLh~A~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          70 TPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCS
T ss_pred             cchhhhhhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHh
Confidence            9999999999999999999999 999999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=170.46  Aligned_cols=152  Identities=22%  Similarity=0.321  Sum_probs=133.8

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .++|+.|+..++.+++++++..+... +..+..|.|||+.|+..++.+++++|+ +.+.+++..+..+.||||.++..++
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll-~~g~~~~~~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHH-HCCCccccccccccccchhhcccCc
Confidence            34688888999999999888888877 777888889999999999999999888 4566777788888899999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLT  181 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  181 (215)
                      .+++++++++|++            ++.+|..|.||||+|++.|+.+++++|+++|+++ +.+|..|.||||+|++.|+.
T Consensus       310 ~~~~~~ll~~g~~------------in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~-n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         310 IKLVKFLLQHQAD------------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             SHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCSSSCCHHHHHHHTTCH
T ss_pred             ceeeeeecccccc------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCH
Confidence            9999999988877            4468899999999999999999999999999997 78999999999999999999


Q ss_pred             HHHHHHH
Q 037245          182 DIACFII  188 (215)
Q Consensus       182 ~~~~~Ll  188 (215)
                      ++|++|.
T Consensus       377 ~iv~~L~  383 (408)
T d1n11a_         377 SVTDVLK  383 (408)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-25  Score=161.98  Aligned_cols=158  Identities=20%  Similarity=0.227  Sum_probs=126.4

Q ss_pred             CchHHHHHHHcCCcchHHHHHHhccccccccC-CCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC-----------
Q 037245           55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHN-LKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE-----------  122 (215)
Q Consensus        55 g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-----------  122 (215)
                      +.|+|+.|+..|+.++|++|++ .+++++.++ ..|.||||+|+..|+.+++++|++++..........           
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            5789999999999999999995 567777554 579999999999999999999999887653333222           


Q ss_pred             -----------------------------------------------------ccccccccCCCCCcHHHHHHhcCCHHH
Q 037245          123 -----------------------------------------------------PESLLRITDDEGNTPLHNAVRNKHENV  149 (215)
Q Consensus       123 -----------------------------------------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~  149 (215)
                                                                           ...........|.||||+|+..++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                 000012334568999999999999999


Q ss_pred             HHHHHHcCCCCccccccCCCcHHHHHHHcC----CHHHHHHHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          150 VRMLVKKDRIPLGYINKAEQTPLAIAIDSS----LTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       150 ~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +++|+++....++..+..+.+++..+...+    ..+++++|+++| ++++.++..|.||||+|+..|+
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~  231 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCc
Confidence            999998743334788888988887765443    457999999999 9999999999999999999886

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.1e-27  Score=148.78  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=107.3

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCC-CHHHHHHHhCC
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE-TPLHIAARVGD  101 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~-t~l~~a~~~~~  101 (215)
                      ++||.|+..|+.+++++|+++|.++ +.++..|.||||.|+ .|+.+++++|+ ..+.+++.++..+. ||||+|++.|+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccc-cccccccccccccccccccccccccc
Confidence            4699999999999999999999999 999999999999775 78999999999 56777888887765 69999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK  155 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  155 (215)
                      .+++++|+++|+++            +..|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~------------~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARL------------DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCS------------SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc------------ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999874            4689999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=4.8e-27  Score=148.28  Aligned_cols=107  Identities=19%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             cHHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCC
Q 037245           22 DHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGD  101 (215)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  101 (215)
                      .+||++|++.|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|+ ..+.+++.+|..|.||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCc
Confidence            36899999999999999999999998 999999999999999999999999999 6678899999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHH
Q 037245          102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAV  142 (215)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  142 (215)
                      .+++++|+++|+++            +..|.+|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~------------~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADK------------TVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCS------------SSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccc------------eeeCCCCCCHHHHHh
Confidence            99999999999884            468999999999884

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-26  Score=146.24  Aligned_cols=121  Identities=18%  Similarity=0.195  Sum_probs=106.5

Q ss_pred             HHHHHHHHcCChHHHHHHHhcccCcccccCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH
Q 037245           23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP  102 (215)
Q Consensus        23 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  102 (215)
                      +.|+.|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+ +.+.+++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhHH
Confidence            4699999999999999999999998 999999999999999999999999999 56778899999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHH--HhcCCHHHHHHHHHc
Q 037245          103 AIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA--VRNKHENVVRMLVKK  156 (215)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~ll~~  156 (215)
                      +++++|+++|+++..           ..+..+.|+++.+  ...|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~v~~-----------~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFA-----------MTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTC-----------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCccc-----------ccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999988653           1234577776654  567788999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.8e-26  Score=144.86  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=107.5

Q ss_pred             chHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCC
Q 037245           56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGN  135 (215)
Q Consensus        56 ~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (215)
                      .++|+.|+..|+.+++++|+ +.+.+++.+|.+|+||||+|+..++.+++++|+++|+++            +..|.+|+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll-~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~------------~~~d~~g~   68 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV------------NAADSDGW   68 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------------TCCCTTCC
T ss_pred             hHHHHHHHHcCCHHHHHHHH-HcCCCcccccccccccccccccccccccccccccccccc------------ccccccCc
Confidence            47899999999999999999 567789999999999999999999999999999999774            46889999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHH--HHcCCHHHHHHHHHhC
Q 037245          136 TPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA--IDSSLTDIACFIIDQR  191 (215)
Q Consensus       136 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~Ll~~g  191 (215)
                      ||||+|+..|+.+++++|+++|+++.......+.||++++  ++.|+.+++++|++.+
T Consensus        69 tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          69 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999999999999999987333334588887765  5778899999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-24  Score=148.43  Aligned_cols=160  Identities=21%  Similarity=0.245  Sum_probs=133.3

Q ss_pred             CCchHHHHHHHcCCcchHHHHHH---hccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhcccccCCCCCC--------
Q 037245           54 RGNTVLHMAIRFRNHKVIPEILR---QQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESE--------  122 (215)
Q Consensus        54 ~g~t~L~~A~~~~~~~~~~~ll~---~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--------  122 (215)
                      +|.||||+||..|+.++++.|++   ..+.+++.+|..|.||||+|+..|+.++++.|+++|++........        
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999885   4677889999999999999999999999999999998765443333        


Q ss_pred             -----------------ccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHH
Q 037245          123 -----------------PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIAC  185 (215)
Q Consensus       123 -----------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  185 (215)
                                       .....+.......++++.+.........+.+..............+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                             011122334556677888888778888888877766655566778899999999999999999


Q ss_pred             HHHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          186 FIIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       186 ~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .++++| ...+.++..|.||||+|+.+|+
T Consensus       162 ~~~~~~-~~~~~~d~~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         162 LLLQHG-ANVNAQMYSGSSALHSASGRGL  189 (228)
T ss_dssp             HHHHTT-CCTTCBCTTSCBHHHHHHHHTC
T ss_pred             hhhhhc-cccccccccCcchHHHHHHcCC
Confidence            999999 9999999999999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.5e-24  Score=141.50  Aligned_cols=121  Identities=23%  Similarity=0.317  Sum_probs=71.4

Q ss_pred             HHHHHHHcCChHHHHHHHhcccCcccc------cCCCCchHHHHHHHc---CCcchHHHHHHhccccccccCCCCCCHHH
Q 037245           24 ELLNVLRRGDEHQIRPIAGRMQNIFST------MSPRGNTVLHMAIRF---RNHKVIPEILRQQDSLLRKHNLKGETPLH   94 (215)
Q Consensus        24 ~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~   94 (215)
                      .|+.|++.++...+..++..|.++ ..      .+..|.||||+|+..   +..+++++|+ +.+++++.+|..|.||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDL-TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCc-CCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHH-HcCCChhhhhhhhccccc
Confidence            477888888888888888877665 22      244556666666643   3445555555 334455555555666666


Q ss_pred             HHHHhCCHHHHHHHHhhcccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 037245           95 IAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR  158 (215)
Q Consensus        95 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  158 (215)
                      +|+..|+.+++++|+++|+++            +.+|..|.||||+|+..++.+++++|++.++
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~------------~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASI------------EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCccc------------cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            666666666666666555542            2445555556655555555555555555443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=3.8e-24  Score=148.19  Aligned_cols=166  Identities=22%  Similarity=0.256  Sum_probs=146.8

Q ss_pred             hHHHHHHHhcccCcccc-cCCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCHHHHHHHHhhc
Q 037245           34 EHQIRPIAGRMQNIFST-MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV  112 (215)
Q Consensus        34 ~~~~~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  112 (215)
                      .++|++|+++|+++ +. .|..|.||||+||..|+.+++++|+ ..+..++.++..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~di-n~~~d~~G~t~L~~A~~~g~~e~v~~Ll-~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAEL-NATMDKTGETSLHLAARFARADAAKRLL-DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCc-CcCcCCCCCCHHHHHHHcCCHHHHHHHH-hhcccccccccccccccccccccccccccccccccc
Confidence            57999999999998 65 6899999999999999999999999 567778899999999999999999998877776654


Q ss_pred             ccccCCCCCCccccccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 037245          113 PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRP  192 (215)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  192 (215)
                      .....           .....+.++.+.+.........+.|...++.. +..+..|.|||+.++..+..++++.+++++ 
T Consensus        80 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~-  146 (209)
T d1ot8a_          80 ATNLN-----------ARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHH-  146 (209)
T ss_dssp             TCCTT-----------CCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             ccccc-----------cccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccc-
Confidence            33221           34556788889999899999999999998886 678899999999999999999999999999 


Q ss_pred             CCccccCccCccHHHHHHHhCC
Q 037245          193 DSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       193 ~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      .+++.+|..|.||||+|+..|+
T Consensus       147 ~~~~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_         147 ANRDAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ccccccccccccccchhccccH
Confidence            9999999999999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.2e-23  Score=138.27  Aligned_cols=129  Identities=18%  Similarity=0.226  Sum_probs=108.0

Q ss_pred             hHHHHHHHcCCcchHHHHHHhccccccc------cCCCCCCHHHHHHHh---CCHHHHHHHHhhcccccCCCCCCccccc
Q 037245           57 TVLHMAIRFRNHKVIPEILRQQDSLLRK------HNLKGETPLHIAARV---GDPAIVSTILNYVPAITNGTESEPESLL  127 (215)
Q Consensus        57 t~L~~A~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  127 (215)
                      ..|..|+..+++..+..++.. +.++..      .+..|.||||+|++.   +..+++++|+++|+++            
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi------------   74 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------------   74 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------------
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh------------
Confidence            346678889999888888743 333332      366799999999985   6789999999999874            


Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q 037245          128 RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRL  199 (215)
Q Consensus       128 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  199 (215)
                      +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.|+.+++++|++.+....+..+
T Consensus        75 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~~~  145 (154)
T d1dcqa1          75 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV  145 (154)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCSSC
T ss_pred             hhhhhhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCcch
Confidence            478999999999999999999999999999987 78999999999999999999999999998744444433

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=6.5e-26  Score=168.56  Aligned_cols=176  Identities=9%  Similarity=0.035  Sum_probs=128.6

Q ss_pred             CCCcchhhccHHHHHHHHcCChHHHHHHHhcccCcccccC--CCCchHHHHHHHcCCcchHHHHHHhcccc--ccccCCC
Q 037245           13 MDQELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMS--PRGNTVLHMAIRFRNHKVIPEILRQQDSL--LRKHNLK   88 (215)
Q Consensus        13 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~ll~~~~~~--~~~~~~~   88 (215)
                      ++..+. .+.+|||+|++.|+.+++++|+++|+++ +..+  ..|.||||+|+..|+.++|++|++.+...  .+.++.+
T Consensus       119 in~~~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~  196 (346)
T d2ajaa1         119 VKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN  196 (346)
T ss_dssp             CC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             ccccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCC
Confidence            344443 4456799999999999999999999988 6544  46899999999999999999999654322  3445566


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhhcccccCC-----CCCC-------------------------ccccccccC-------
Q 037245           89 GETPLHIAARVGDPAIVSTILNYVPAITNG-----TESE-------------------------PESLLRITD-------  131 (215)
Q Consensus        89 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~-------------------------~~~~~~~~~-------  131 (215)
                      +.||++.|+.+|+.+++++|+++|+++...     ....                         .....+..+       
T Consensus       197 ~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  276 (346)
T d2ajaa1         197 YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG  276 (346)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHH
T ss_pred             CcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhccccccc
Confidence            788999999999999999999998654211     0000                         000000011       


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCc----cccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 037245          132 DEGNTPLHNAVRNKHENVVRMLVKKDRIPL----GYINKAEQTPLAIAIDSSLTDIACFIIDQ  190 (215)
Q Consensus       132 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  190 (215)
                      ..+.++++.+...+..+++++|++.+....    ...+..|+||||+|++.|+.++|++|++.
T Consensus       277 ~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         277 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             chhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            112356777888889999999998876431    23345789999999999999999999964

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.2e-20  Score=137.54  Aligned_cols=151  Identities=20%  Similarity=0.176  Sum_probs=98.2

Q ss_pred             ccCccccc-CCCCchHHHHHHHcCCcchHHHHHHhccccccccCCCCCCHHHHHHHhCCH-------HHHHHHHhhcccc
Q 037245           44 MQNIFSTM-SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDP-------AIVSTILNYVPAI  115 (215)
Q Consensus        44 ~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~-------~~~~~Ll~~~~~~  115 (215)
                      +.++ +.. |..|.||||+||..|+.++|++|+ +.+++++.+|..|+||||.|+..++.       ++++.+...    
T Consensus        96 ~~dv-n~~~D~~G~T~LH~Aa~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----  169 (301)
T d1sw6a_          96 QLNL-NIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----  169 (301)
T ss_dssp             CCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----
T ss_pred             CCCc-CcCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----
Confidence            3455 433 889999999999999999999999 56788999999999999999987652       344444322    


Q ss_pred             cCCCCCCccccccccCCCCCcHHHHHHhcCC----H--------HHHHHHHHcCCCCccccccCCCcHHHHHHHcCCHHH
Q 037245          116 TNGTESEPESLLRITDDEGNTPLHNAVRNKH----E--------NVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDI  183 (215)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~--------~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  183 (215)
                                 +...|..|+||||.++..+.    .        .++.++...+..........+.++++.+........
T Consensus       170 -----------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
T d1sw6a_         170 -----------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI  238 (301)
T ss_dssp             -----------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHH
T ss_pred             -----------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHH
Confidence                       23578889999998875443    2        244556666655544455556666666655444333


Q ss_pred             HHH-----HHHhCCCCccccCccCccHHHHHHHhCC
Q 037245          184 ACF-----IIDQRPDSLDHRLPEELTLLHSAVMRQN  214 (215)
Q Consensus       184 ~~~-----Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  214 (215)
                      +..     ++.   ..+|.+|..|+||||+|+++|+
T Consensus       239 ~~~~~~~~~~~---~~in~~D~~G~TpLh~A~~~g~  271 (301)
T d1sw6a_         239 LENLDLKWIIA---NMLNAQDSNGDTCLNIAARLGN  271 (301)
T ss_dssp             HHHCSHHHHHH---HTTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHhhHHHHh---cCccCCCCCCCCHHHHHHHcCC
Confidence            332     222   3378899999999999999987