Citrus Sinensis ID: 037259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAKKCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNGYREDLGKNGE
Secondary Structure (PSIPRED)
cccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgkwaseivdpkkgvrVCLGTFDIVEEVARSYAEAAKRnrynmakldfadlllpitpapakkccmlfpELKRFLTSmvcwrlpstcsIKWLFEIGngyredlgknge
Flexible Loop (DISEMBL)
mgkwaseivdpkkgvrvcLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAKKCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNgyredlgknge
Low Complexity Region (SEG)
MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAKKCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNGYREDLGKNGE
Disordered region (IsUnstruct)
*******IVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAKKCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNGYR********
Disordered Region (DISOPRED)
*GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFAD*********************************************************
Disordered Region (DISEMBL)
MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAKKCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNGYREDLGKNGE
Disordered Region (DISPRO)
*GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLL********************F*TSMVCWRLPSTCSIKWLFEIGNGYREDL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAKKCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNGYREDLGKNGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9FGF8	391	Ethylene-responsive trans	yes	no	0.532	0.145	0.561	3e-10
P42736	248	Ethylene-responsive trans	no	no	0.607	0.262	0.455	7e-10
Q6K7E6	365	Ethylene-responsive trans	no	no	0.523	0.153	0.524	1e-09
Q8H0T5	211	Ethylene-responsive trans	no	no	0.439	0.222	0.617	2e-08
P93007	218	Ethylene-responsive trans	no	no	0.551	0.270	0.476	1e-07
O22259	171	Ethylene-responsive trans	no	no	0.439	0.274	0.595	1e-07
Q9FH54	248	Ethylene-responsive trans	no	no	0.439	0.189	0.553	6e-07
Q9LYU3	212	Ethylene-responsive trans	no	no	0.457	0.231	0.530	7e-07
O80340	222	Ethylene-responsive trans	no	no	0.476	0.229	0.509	1e-06
Q9FE67	200	Ethylene-responsive trans	no	no	0.439	0.235	0.531	2e-06

>sp|Q9FGF8|ABR1_ARATH Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 38/57 (66%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPA 58
           GKWA+EI DP K  RV LGTFD  E  AR+Y EAA R R N AKL+F + +  + PA
Sbjct: 194 GKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPA 250

Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 14/79 (17%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLL-------- 53
           GKWA+EI DP+KGVRV LGTF+  EE A +Y  AAK+ R + AKL+F DL          
Sbjct: 88  GKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTP 147

Query: 54  ------PITPAPAKKCCML 66
                      PAKK C++
Sbjct: 148 PPSSPRSTDQPPAKKVCVV 166

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7E6|ERF1_ORYSJ Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DP+KGVRV LGTF+  EE AR+Y   A+R R   AK++F     P  P  A+
Sbjct: 129 GKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF-----PEAPTTAQ 183

Query: 62  K 62
           K
Sbjct: 184 K 184

Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H0T5|ERF73_ARATH Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 34/47 (72%)

Query: 2  GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
          G+WA+EI DP KGVRV LGTF+  EE AR+Y   AKR R   AKL+F
Sbjct: 34 GRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLL----LPITP 57
           GKWA+EI DP K  RV LGTFD  EE A +Y +AA   R + AKL+F + +      + P
Sbjct: 79  GKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYP 138

Query: 58  APA 60
           +PA
Sbjct: 139 SPA 141

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
           GKWA+EI DP KGVRV LGTF   +E AR+Y  AA + R   AKL+F
Sbjct: 59  GKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
           GKWA+EI DPKK  RV LGTF+  E  A +Y EAA + + + AKL+F
Sbjct: 99  GKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 2  GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFAD 50
          GKWA+EI DPKK  RV LGTF+  EE A +Y  AA + +   AKL+F +
Sbjct: 48 GKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query: 2  GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLL 52
          G++A+EI DP K  RV LGTFD  EE AR+Y  AA+  R   AK +F   L
Sbjct: 34 GRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFL 84

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 2  GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
          G++A+EI DP K  RV LGTFD  EE AR+Y  AA+  R + AK +F
Sbjct: 42 GRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
62131147	256	putative ethylene responsive element bin	0.635	0.265	0.594	4e-13
55419648	255	AP2/EREBP transcription factor ERF-2 [Go	0.635	0.266	0.579	4e-13
351637705	261	ethylene response factor [Rumex palustri	0.532	0.218	0.580	1e-11
10798644	226	AP2 domain-containing transcription fact	0.859	0.407	0.412	2e-11
255551851	247	conserved hypothetical protein [Ricinus	0.654	0.283	0.482	3e-11
224110340	248	AP2/ERF domain-containing transcription	0.635	0.274	0.481	6e-11
28268684	264	AP2/ERF-domain protein [Solanum tuberosu	0.542	0.219	0.587	6e-11
302398557	252	AP2D domain class transcription factor [	0.607	0.257	0.520	8e-11
388496754	259	unknown [Medicago truncatula]	0.588	0.243	0.578	8e-11
351734446	166	uncharacterized protein LOC100527415 [Gl	0.654	0.421	0.540	1e-10

>gi|62131147|gb|AAX68525.1| putative ethylene responsive element binding protein 2 [Gossypium hirsutum]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DP KGVRV LGT++  EE AR+Y EAAKR R   AKL+F      +T  PAK
Sbjct: 100 GKWAAEIRDPHKGVRVWLGTYNTAEEAARAYDEAAKRIRGEKAKLNFPQTPH-LTQPPAK 158

Query: 62  KCCMLFPEL 70
           K CM+ PEL
Sbjct: 159 KRCMMAPEL 167

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55419648|gb|AAV51937.1| AP2/EREBP transcription factor ERF-2 [Gossypium hirsutum]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DP KGVR+ LGT++  EE AR+Y EAAKR R + AKL+F      +T  PAK
Sbjct: 99  GKWAAEIRDPHKGVRIWLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPQTPR-LTQPPAK 157

Query: 62  KCCMLFPEL 70
           K CM+ PEL
Sbjct: 158 KRCMMAPEL 166

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351637705|gb|AEQ58799.1| ethylene response factor [Rumex palustris]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 5/62 (8%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DPKKGVRV LGTF+  EE AR+Y +AA++ R + AKL+F     P TPAP +
Sbjct: 91  GKWAAEIRDPKKGVRVWLGTFNTAEEAARAYDQAARKIRGDKAKLNF-----PDTPAPKR 145

Query: 62  KC 63
           +C
Sbjct: 146 RC 147

Source: Rumex palustris

Species: Rumex palustris

Genus: Rumex

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10798644|emb|CAC12822.1| AP2 domain-containing transcription factor [Nicotiana tabacum]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DP+KGVRV LGTF+  EE AR+Y EAAKR R + AKL+F +   P +P   +
Sbjct: 74  GKWAAEIRDPQKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFPE---PPSPPAKR 130

Query: 62  KCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGNGY 98
            C    P+  +   S +  + P++  + + +E    Y
Sbjct: 131 HCTSTIPD--QPTRSDLMSQKPASIMLNYGYENQTPY 165

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551851|ref|XP_002516971.1| conserved hypothetical protein [Ricinus communis] gi|223544059|gb|EEF45585.1| conserved hypothetical protein [Ricinus communis]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 17/87 (19%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF------------- 48
           GKWA+EI DP+KGVRV LGTF   EE AR+Y EAAKR R + AKL+F             
Sbjct: 102 GKWAAEIRDPQKGVRVWLGTFSTAEEAARAYDEAAKRIRGDKAKLNFPTPTPLAAPAPAP 161

Query: 49  ---ADLLLPITPAPAKK-CCMLFPELK 71
               ++  P+ P P+KK C M  PE K
Sbjct: 162 AAPTEVEAPVLPPPSKKSCTMSSPETK 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110340|ref|XP_002315490.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222864530|gb|EEF01661.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 13/81 (16%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPIT----- 56
           GKWA+EI DP KGVRV LGT++  +E A++Y EAAKR R + AKL+F     P +     
Sbjct: 107 GKWAAEIRDPHKGVRVWLGTYNTADEAAKAYDEAAKRIRGDKAKLNFPPQPPPTSEAAPP 166

Query: 57  --------PAPAKKCCMLFPE 69
                   P PAKK C+L PE
Sbjct: 167 PPPKSEAAPPPAKKRCILGPE 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28268684|dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 5/63 (7%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DP+KGVRV LGTF+  E+ AR+Y EAAKR R N AKL+F     P    PAK
Sbjct: 106 GKWAAEIRDPQKGVRVWLGTFNTAEDAARAYDEAAKRIRGNKAKLNF-----PAPSPPAK 160

Query: 62  KCC 64
           + C
Sbjct: 161 RQC 163

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398557|gb|ADL36573.1| AP2D domain class transcription factor [Malus x domestica]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 8/73 (10%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLL-------- 53
           GKWA+EI DP KGVRV LGT+D  EE AR+Y EAA R R + AKL+FA            
Sbjct: 99  GKWAAEIRDPYKGVRVWLGTYDTAEEAARAYDEAAVRIRGDKAKLNFAQPPSSSPLPSLA 158

Query: 54  PITPAPAKKCCML 66
           P TP P K+ C++
Sbjct: 159 PDTPPPTKRRCIV 171

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496754|gb|AFK36443.1| unknown [Medicago truncatula]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
           GKWA+EI DP++GVRV LGTF   EE AR+Y  AAKR R + AKL+F D    +T  PAK
Sbjct: 105 GKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDTAAKRIRGDKAKLNFPDTPA-VTAPPAK 163

Query: 62  KCCM 65
           K C+
Sbjct: 164 KQCV 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734446|ref|NP_001235751.1| uncharacterized protein LOC100527415 [Glycine max] gi|255632294|gb|ACU16505.1| unknown [Glycine max]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 4/74 (5%)

Query: 2   GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLP-ITPAPA 60
           GKWA+EI DP+KGVRV LGTF+  EE AR+Y  AAKR R + AKL+F D   P + P   
Sbjct: 91  GKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDNAAKRIRGDKAKLNFPDSKNPCLNPFQL 150

Query: 61  KKCCMLFPELKRFL 74
           K    LF  L+ FL
Sbjct: 151 K---HLFSNLESFL 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2089368	248	EBP "ethylene-responsive eleme	0.523	0.225	0.589	4.1e-11
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.542	0.263	0.534	2.5e-10
TAIR|locus:2176095	391	ABR1 "ABA REPRESSOR1" [Arabido	0.532	0.145	0.561	1.4e-09
TAIR|locus:2194007	262	ERF73 "ethylene response facto	0.887	0.362	0.410	1.8e-09
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.439	0.212	0.583	5.9e-09
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.439	0.274	0.595	7.6e-09
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.457	0.129	0.571	7.8e-09
UNIPROTKB|Q5MFV3	399	BIERF1 "BTH-induced ERF transc	0.523	0.140	0.508	1.1e-08
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.457	0.136	0.530	1.5e-08
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.457	0.255	0.551	2e-08

TAIR|locus:2089368 EBP "ethylene-responsive element binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITP 57
             GKWA+EI DP+KGVRV LGTF+  EE A +Y  AAK+ R + AKL+F DL  P  P
Sbjct:    88 GKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPP 143

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;IMP;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0051707 "response to other organism" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0008219 "cell death" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAP 59
             GKWA+EI DP +  RV LGTFD  E  AR+Y EAA R R N AKL+F + +  + P P
Sbjct:    86 GKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPP 143

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2176095 ABR1 "ABA REPRESSOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/57 (56%), Positives = 38/57 (66%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPA 58
             GKWA+EI DP K  RV LGTFD  E  AR+Y EAA R R N AKL+F + +  + PA
Sbjct:   194 GKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPA 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2194007 ERF73 "ethylene response factor 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/95 (41%), Positives = 51/95 (53%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
             G+WA+EI DP KGVRV LGTF+  EE AR+Y   AKR R   AKL+F +       A AK
Sbjct:    85 GRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAK 144

Query:    62 KCCMLFPELKRFLTSMVCWRLPSTCSIKWLFEIGN 96
                 +    +  L   V    PS+  + +L+E  N
Sbjct:   145 TVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENN 179

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IDA

GO:0034059 "response to anoxia" evidence=IGI

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP;TAS

GO:0071369 "cellular response to ethylene stimulus" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
 Identities = 28/48 (58%), Positives = 34/48 (70%)

Query:     2 GKWASEIVDP-KKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
             GK+A+EI DP KKGVRV LGTFD   E AR Y +AA + R + A L+F
Sbjct:    81 GKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNF 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
             GKWA+EI DP KGVRV LGTF   +E AR+Y  AA + R   AKL+F
Sbjct:    59 GKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFAD 50
             GKWA+EI DP+KG R  LGTFD  EE AR+Y  AA+R R   AK++F +
Sbjct:   137 GKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPE 185

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

UNIPROTKB|Q5MFV3 BIERF1 "BTH-induced ERF transcriptional factor 1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLPITPAPAK 61
             GKWA+EI DP KGVRV LGT++  EE AR+Y   A++ R   AK++F D      PA A+
Sbjct:   148 GKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPD-----EPAVAQ 202

Query:    62 K 62
             K
Sbjct:   203 K 203

GO:0009620 "response to fungus" evidence=IEP

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFAD 50
             GKWA+EI DP++G R+ LGTF   EE AR+Y  AA+R R + AK++F +
Sbjct:   134 GKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPE 182

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query:     2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFAD 50
             GKWA+EI DP K  RV LGTF+  E  AR+Y  AA R R + AKL+F +
Sbjct:    70 GKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-13
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 58.0 bits (141), Expect = 6e-13
 Identities = 28/53 (52%), Positives = 34/53 (64%)

Query: 2  GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLLP 54
          GKW +EI DP KG RV LGTFD  EE AR+Y  AA + R   A+L+F + L  
Sbjct: 11 GKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 56.1 bits (136), Expect = 4e-12
 Identities = 26/50 (52%), Positives = 32/50 (64%)

Query: 2  GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADL 51
          GKW +EI DP  G R+ LGTFD  EE AR+Y  AA + R + A L+F D 
Sbjct: 12 GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.8
PHA00280	121	putative NHN endonuclease	99.14
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.83
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	90.0

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=7.8e-20  Score=114.70  Aligned_cols=51  Identities=51%  Similarity=0.782  Sum_probs=48.4

Q ss_pred             CCceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037259            1 MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADL   51 (107)
Q Consensus         1 wGKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~   51 (107)
                      ||||+|+|+++..|+++|||+|+|+|||++|||.++++++|.++.+|||.+
T Consensus        11 ~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018          11 WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            699999999766699999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.80  E-value=1.1e-19  Score=115.46  Aligned_cols=53  Identities=53%  Similarity=0.808  Sum_probs=50.5

Q ss_pred             CCceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 037259            1 MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLL   53 (107)
Q Consensus         1 wGKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~~~   53 (107)
                      ||||+|+|++|.+++++|||+|+|+||||.|||.++++++|+++.+|||.+.+
T Consensus        10 ~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380       10 WGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            79999999988899999999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.14  E-value=6.9e-11  Score=84.64  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=38.6

Q ss_pred             CceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 037259            2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAK   45 (107)
Q Consensus         2 GKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~   45 (107)
                      |||+|+|+  .+||+++||.|+|+|+|+.||+ ++.++||+|+.
T Consensus        79 ~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         79 EMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            79999999  8999999999999999999997 78899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.83  E-value=8.5e-09  Score=62.84  Aligned_cols=41  Identities=29%  Similarity=0.413  Sum_probs=36.1

Q ss_pred             CceEEEEeCCC-C--CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 037259            2 GKWASEIVDPK-K--GVRVCLGTFDIVEEVARSYAEAAKRNRYN   42 (107)
Q Consensus         2 GKW~AeIr~~~-~--~kr~~LGtFdT~eEAA~AYD~aA~~~~G~   42 (107)
                      ++|+|.|+++. +  +++++||.|++++||+++|+.++++++|+
T Consensus        13 ~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen   13 GRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             TEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            78999999742 2  49999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=90.00  E-value=1.5  Score=25.69  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             ceEEEE--eCCCCC--eEEeecCCCCHHHHHHHHHHHHHHhc
Q 037259            3 KWASEI--VDPKKG--VRVCLGTFDIVEEVARSYAEAAKRNR   40 (107)
Q Consensus         3 KW~AeI--r~~~~~--kr~~LGtFdT~eEAA~AYD~aA~~~~   40 (107)
                      +|...|  .++.+|  ++++-+-|.|..||-.+...+-..+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            688888  366566  66677999999999999887766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-05
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-05

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 2  GKWASEIVDP-KKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
          GK+A+EI DP K G RV LGTF+  E+ A +Y  AA R R + A L+F
Sbjct: 15 GKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 2  GKWASEIVDP-KKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
          GK+A+EI DP K G RV LGTF+  E+ A +Y  AA R R + A L+F
Sbjct: 12 GKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
1gcc_A	63	Ethylene responsive element binding factor 1; tran	7e-14

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 60.0 bits (146), Expect = 7e-14
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 2  GKWASEIVDP-KKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
          GK+A+EI DP K G RV LGTF+  E+ A +Y  AA R R + A L+F
Sbjct: 12 GKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	91.3

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=4.9e-25  Score=140.33  Aligned_cols=51  Identities=47%  Similarity=0.637  Sum_probs=48.9

Q ss_pred             CCceEEEEeCCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037259            1 MGKWASEIVDPK-KGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADL   51 (107)
Q Consensus         1 wGKW~AeIr~~~-~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~   51 (107)
                      ||||+|+|++|. +|+++|||||+|+||||+|||.++++++|.++.+|||.+
T Consensus        11 ~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A           11 WGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             TTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            899999999987 489999999999999999999999999999999999986

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=91.30  E-value=0.033  Score=39.73  Aligned_cols=27  Identities=7%  Similarity=-0.092  Sum_probs=22.6

Q ss_pred             ceEEEEeCCCCCeEEeecCCCCHHHHHHHH
Q 037259            3 KWASEIVDPKKGVRVCLGTFDIVEEVARSY   32 (107)
Q Consensus         3 KW~AeIr~~~~~kr~~LGtFdT~eEAA~AY   32 (107)
                      +|.+.|.  .+ +.++||.|+|.+|||++|
T Consensus       119 k~~~vi~--~~-~~~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M          119 NQKPIIV--IS-PDGIEKEYPSTKCACEEL  145 (174)
T ss_dssp             TCCCEEE--EC-TTSCEEEESCHHHHHHHH
T ss_pred             CCceEEE--Ec-CCceEEeeCCHHHHHHHH
Confidence            5888887  44 567899999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-11

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.6 bits (124), Expect = 6e-11
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 2  GKWASEIVDP-KKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDF 48
          GK+A+EI DP K G RV LGTF+  E+ A +Y  AA R R + A L+F
Sbjct: 12 GKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=9.1e-25  Score=138.20  Aligned_cols=51  Identities=47%  Similarity=0.637  Sum_probs=48.1

Q ss_pred             CCceEEEEeCCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037259            1 MGKWASEIVDPK-KGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADL   51 (107)
Q Consensus         1 wGKW~AeIr~~~-~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~   51 (107)
                      ||||.|+||+|. +++++|||+|+|+||||+|||++|++++|+++.+|||..
T Consensus        11 ~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_          11 WGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             TTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            799999999874 679999999999999999999999999999999999975