Citrus Sinensis ID: 037367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVSFEHFPAESSPDVTNDESIGSTPAEDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
mgkkggggngwFSSVKRVFqsssnkdlpqkscnlYQNRIRFLGVKenvekwpqevpevvsfehfpaesspdvtndesigstpaedrNHAIAVAVATAAAAEAAVAAAQAAAKVVRLagygrhskEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERLQKtkvkededeeEVDEELQNqrsplkqyaaagswdngrgrhqnsEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHqhlsqsnpngrDIVELYAQEGERGQWGWNWLERWMsaqphharnlgpneasyvalpittttttttttddmlsektvemdvitppsssntkmgrfnrelsdsssyippqhkpsfshnvpsymaptqsakak
Flexible Loop (DISEMBL)
mgkkggggngwfssVKRVFQsssnkdlpqkscnLYQNRIRFLGVKENVEKWPQEVPEVVSFehfpaesspdvtNDESIGSTPAEDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAgygrhskeerAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLaherlqktkvkededeeevdeelqnqrsplkqyaaagswdngrgrhqnsekklkenasrkHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITtttttttttddmlsektvemdvitppsssntkmgrFNRELSDSSSYIPPqhkpsfshnvpsyMAPTQSAKAK
Low Complexity Region (SEG)
MgkkggggngWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVSFEHFPAESSPDVTNDESIGSTPAEDRNHaiavavataaaaeaavaaaqaaakvvrlaGYGRHSKEERAATLIQSyyrgylarralralkglvrlQALVRGHNVRKQAQMTMRCMqalvrvqarvrarrlqlaHERLQKTkvkededeeevdeeLQNQRSPLKQYAAAGSWDNGRGRHQNSEKKLKENASRKHESLMKKERslayayayqqqqqqhqhlsqsNPNGRDIVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPIttttttttttDDMLSEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK
Disordered region (IsUnstruct)
*******************************CNLYQNRIRFLGVKENVEKWPQEVPEVVSF***************************AIAVAVATAAAAEAAVAAAQAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRL**************************************************************************************************IVELYAQEGERGQWGWNWLERWMSA*********************************************************************************************
Disordered Region (DISOPRED)
*G****GGNGWFSS*************************************************************************************************************KEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQ******************************EELQNQRSPLKQYAA***************************************************************************GWNWLERWMS***********************************************************************************YMAPTQSAKA*
Disordered Region (DISEMBL)
MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVSFEHFP*************GSTPAEDRNHAIAVAVA****************KVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERLQK********************SPLKQYAAAGS***************************KKERSLAYAYA**************NPNGRDIVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSY**********
Disordered Region (DISPRO)
*****************************************************************************************************************VRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQ***A*SWDNGRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQ*******************AQ*G*RGQWGWNWLERWMSAQPHH*****************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVSFEHFPAESSPDVTNDESIGSTPAEDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERxxxxxxxxxxxxxxxxxxxxxQRSPLKQYAAAGSWDNGRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.429	0.383	0.346	1e-25
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.580	0.351	0.288	4e-20
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.160	0.110	0.553	8e-14
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.316	0.161	0.315	4e-13
Q9FYG2	1016	Calmodulin-binding transc	no	no	0.244	0.097	0.287	0.0008

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 28/202 (13%)

Query: 113 VVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMR 172
           V R AG    SKEE AA LIQS +RG+LARR  + ++G  RL+ L+ G  V++QA +T++
Sbjct: 98  VNRFAG---KSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLK 154

Query: 173 CMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDN 232
           CMQ L RVQ+++R+RR++++           +E++    + LQ     L      G+W+ 
Sbjct: 155 CMQTLSRVQSQIRSRRIRMS-----------EENQARHKQLLQKHAKELGGLKNGGNWNY 203

Query: 233 GRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELY 292
                  S+++++     K+E+ M++ER+LAYA+ +QQ  +       +NP   D     
Sbjct: 204 S----NQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKT--ANPMFMD----- 252

Query: 293 AQEGERGQWGWNWLERWMSAQP 314
                   WGW+WLERWM+ +P
Sbjct: 253 ---PSNPTWGWSWLERWMAGRP 271

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 63/298 (21%)

Query: 128 AATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRAR 187
           +AT IQ  +RGY+AR++ RALKGLVRLQ +VRG++V++Q    M+ MQ +VRVQ+++++R
Sbjct: 324 SATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSR 383

Query: 188 RLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQNSEKKLKEN 247
           R+++   + Q   V++DE +    E            A   +WD+     +  + +    
Sbjct: 384 RIKMLENQAQ---VEKDEAKWAASE------------AGNDNWDDSVLTKEERDSR---- 424

Query: 248 ASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERGQWGWNWLE 307
           + RK ++++K+ERS+AYAY+    ++  ++  +S  + R             QW WNW++
Sbjct: 425 SQRKTDAIIKRERSMAYAYS----RKLWKNSPKSTQDNRSF----------PQW-WNWVD 469

Query: 308 RWMS--------AQPHHARNLGPNEASYVALPITTTTTTTTTTD--DMLSEKTVEMDVIT 357
           R           +QP     L P+      L  ++        +  D  + ++      T
Sbjct: 470 RQNPLASPAPSYSQPQRDFRLTPSRLCPSPLSQSSKQHHIRLDNHFDTSTPRSSRSTFHT 529

Query: 358 PPSSSNTKMGRFNR----------ELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           P    +T   R++R          +  DS +  PP          PSYMAPT SAKAK
Sbjct: 530 PSRPIHTGTSRYSRGRLRGQDSPFKDDDSLTSCPP---------FPSYMAPTVSAKAK 578

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 49/65 (75%)

Query: 126 ERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVR 185
           E AAT +Q+ +RGYLARRA  ALKG++RLQAL+RGH VR+QA  T+  +  +VR+QA  R
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172

Query: 186 ARRLQ 190
            R ++
Sbjct: 173 GREIR 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 81/187 (43%), Gaps = 59/187 (31%)

Query: 125 EERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARV 184
           +E    +IQ+  RG+LARR L   K +++LQA VRGH VR QA  ++RC+QA+V++QA V
Sbjct: 214 DESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMV 273

Query: 185 RARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQNSEKKL 244
           RAR     H     ++V    D+ E +             AAA              +KL
Sbjct: 274 RAR-----HSTKDGSRVSATSDKSEPN-------------AAA--------------QKL 301

Query: 245 KENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERGQWGWN 304
            EN   KH                         L +S P  + I      +  +    WN
Sbjct: 302 LENKFAKH-------------------------LMESTPKTKPIN--IKCDPTKPSSAWN 334

Query: 305 WLERWMS 311
           WLERWMS
Sbjct: 335 WLERWMS 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG2|CMTA4_ARATH Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 119 YGRHSKEERAATLIQSYYRGYLARRALRALK-GLVRLQALVRGHNVRKQAQMTMRCMQAL 177
           +G+      AA  IQ  +RGY  R+    L+  +V++QA VRG+ +RK  ++    ++ L
Sbjct: 849 FGKGRNYNSAALSIQKNFRGYKDRKCFLELRQKVVKIQAHVRGYQIRKNYKVICWAVRIL 908

Query: 178 VRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQR 218
            +V  R R + + L   R Q  +  ED ++E++ +  + Q+
Sbjct: 909 DKVVLRWRRKGVGLRGFR-QDVESTEDSEDEDILKVFRKQK 948

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
224135155	460	predicted protein [Populus trichocarpa]	0.896	0.789	0.628	1e-107
224118286	465	predicted protein [Populus trichocarpa]	0.916	0.797	0.650	1e-100
255551237	452	conserved hypothetical protein [Ricinus	0.918	0.823	0.652	1e-100
225455366	466	PREDICTED: protein IQ-DOMAIN 1-like [Vit	0.903	0.785	0.608	4e-97
302143909	478	unnamed protein product [Vitis vinifera]	0.893	0.757	0.606	5e-96
356509249	462	PREDICTED: protein IQ-DOMAIN 14-like [Gl	0.829	0.727	0.606	3e-86
356551365	464	PREDICTED: protein IQ-DOMAIN 1-like [Gly	0.920	0.803	0.594	2e-85
297816152	471	IQ-domain 21 [Arabidopsis lyrata subsp.	0.925	0.796	0.504	5e-79
6723396	535	SF16-like protein [Arabidopsis thaliana]	0.928	0.702	0.505	1e-78
18408809	471	protein IQ-domain 21 [Arabidopsis thalia	0.928	0.798	0.505	2e-78

>gi|224135155|ref|XP_002321997.1| predicted protein [Populus trichocarpa] gi|222868993|gb|EEF06124.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/407 (62%), Positives = 297/407 (72%), Gaps = 44/407 (10%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVS 60
           MGKKG   +GWF+SVK+VF+SS  K+LP +              K+NVEKW  E PEVVS
Sbjct: 1   MGKKG---SGWFTSVKKVFKSSP-KELPIEKK------------KDNVEKWQHEAPEVVS 44

Query: 61  FEHFPAESSPDVTNDESIGSTPA-EDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGY 119
           FEHFPAESSPDVT+DES  S+P  EDRNH        A A   A AAAQAAA VVRLAGY
Sbjct: 45  FEHFPAESSPDVTHDESNASSPVTEDRNHV------IAVAVATAAAAAQAAANVVRLAGY 98

Query: 120 GRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVR 179
           GR+SKEERAA LIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVR
Sbjct: 99  GRYSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVR 158

Query: 180 VQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQN 239
           VQARVRARRLQL HE+LQ    +EDE    V EE+ N +SPLK Y     WD+   R+++
Sbjct: 159 VQARVRARRLQLTHEKLQMKAEEEDERRLSVVEEIMNPKSPLKSY----KWDS---RNRS 211

Query: 240 SEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERG 299
             K  KENAS+KH+++MK+ER+LAYAYAY+QQQQ    LSQ++PNG++I   +    E+ 
Sbjct: 212 PGKIFKENASKKHDAVMKRERALAYAYAYEQQQQ--PLLSQNSPNGKEIGH-FVDGSEKA 268

Query: 300 QWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDVITPP 359
           QWGWNWLE WMSAQP++ R LGPNE SYV L    TTT T TTDDM SEKTVEMD++TP 
Sbjct: 269 QWGWNWLEGWMSAQPYNVRQLGPNEGSYVTL---NTTTATATTDDM-SEKTVEMDMVTPT 324

Query: 360 SSSNTKMGRFNRELSDSSSYIPPQHKPSF-SHNVPSYMAPTQSAKAK 405
            +SN+ MG  +  LS +      +H+    S NVPSYMAPTQSAKAK
Sbjct: 325 GTSNSNMGILDANLSSN------RHQRQLSSSNVPSYMAPTQSAKAK 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118286|ref|XP_002317781.1| predicted protein [Populus trichocarpa] gi|222858454|gb|EEE96001.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 264/406 (65%), Positives = 299/406 (73%), Gaps = 35/406 (8%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVS 60
           MGKKG    GWF+SVKRVF+SSS K+LP                K+N EKW  E PEVVS
Sbjct: 1   MGKKG---KGWFTSVKRVFKSSSPKELPVGKK------------KDNAEKWQHEAPEVVS 45

Query: 61  FEHFPAESSPDVTNDESIGSTPA-EDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGY 119
            EHFP  SSPDVTNDES  STP  EDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGY
Sbjct: 46  LEHFPTGSSPDVTNDESNVSTPVTEDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGY 105

Query: 120 GRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVR 179
           GR SKEERAA LIQS+YRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMR MQALVR
Sbjct: 106 GRQSKEERAAILIQSFYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRSMQALVR 165

Query: 180 VQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQN 239
           VQARVRARRL+LAHE+LQ+   +EDE    VDE+  N ++PLK Y     WD    R   
Sbjct: 166 VQARVRARRLELAHEKLQRKTEEEDERRLPVDEDFMNPKNPLKSY----KWD----RRNQ 217

Query: 240 SEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQEGERG 299
           S    KENAS+KH+++MK+ER+LAYAYA+QQQQQQ   LSQ++PNG++    +  E E+ 
Sbjct: 218 SSDNFKENASKKHDAVMKRERALAYAYAFQQQQQQQL-LSQNSPNGKETGH-FVNEHEKM 275

Query: 300 QWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDVITPP 359
           QWGWNWLERWMSAQ ++ R  GPNE SYV    T  TTTTTTT + +SEKTVEMD++TP 
Sbjct: 276 QWGWNWLERWMSAQSYNVRQSGPNEGSYV----TVNTTTTTTTTEDMSEKTVEMDMVTPT 331

Query: 360 SSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
            +SN  MG     + D++ Y       S S NV SYMAPTQSAKAK
Sbjct: 332 GTSNPNMG-----MLDTNPYSNRPQWQSSSSNVRSYMAPTQSAKAK 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551237|ref|XP_002516665.1| conserved hypothetical protein [Ricinus communis] gi|223544160|gb|EEF45684.1| conserved hypothetical protein [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 272/417 (65%), Positives = 314/417 (75%), Gaps = 45/417 (10%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVS 60
           MGKKGGG   WFSSVK+VF+SS  K+LP++              K+N EKW  + PE V+
Sbjct: 1   MGKKGGG---WFSSVKKVFKSSPVKELPERK-------------KDNTEKWQLQAPEEVT 44

Query: 61  FEHFPAESSPDVTNDE--SIGSTP--AEDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRL 116
           FEHFPAESSPDVTN+E  S  STP   EDRNHAIAVA+ATAAAAEAAVAAAQAAAKVVRL
Sbjct: 45  FEHFPAESSPDVTNNEESSTTSTPLSVEDRNHAIAVAMATAAAAEAAVAAAQAAAKVVRL 104

Query: 117 AGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQA 176
           AGYGRHS+EERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQA
Sbjct: 105 AGYGRHSREERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQA 164

Query: 177 LVRVQARVRARRLQLAHERLQKTKVKEDED-------EEEVDEELQNQRSPLKQYAAAGS 229
           LVRVQARVRARRLQLAH +LQK KV+E+E+          VDE   N  SPL  Y +   
Sbjct: 165 LVRVQARVRARRLQLAHRKLQK-KVEEEEEEEEEEGRRRSVDERF-NPNSPLTGYGSTEG 222

Query: 230 WDNGRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIV 289
           WDN   RHQ+   ++KE++SRKH+++MK+ER+LAYAYAYQQQ    Q L QS+PNG+++ 
Sbjct: 223 WDN---RHQSISARIKEDSSRKHDAVMKRERALAYAYAYQQQHHHQQPL-QSDPNGKEM- 277

Query: 290 ELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEK 349
             Y  E E+ QWGWNWLERWMS+QP+HAR+LGPNEASY+       TTTTTTTDDM SEK
Sbjct: 278 GFYENEREKAQWGWNWLERWMSSQPYHARHLGPNEASYMT-----LTTTTTTTDDM-SEK 331

Query: 350 TVEMDVITPPSSSNTKMGRFNRELSDSSSYIPP-QHKPSFSHNVPSYMAPTQSAKAK 405
           TVEMDV+TPP      +   N  L D+  Y+   Q + S ++ VPSYMA TQSAKAK
Sbjct: 332 TVEMDVVTPPGI----ISNINNGLLDTPPYLTKHQRQSSLNNYVPSYMASTQSAKAK 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455366|ref|XP_002272529.1| PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera]

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 252/414 (60%), Positives = 296/414 (71%), Gaps = 48/414 (11%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVS 60
           MGKKGGG   W SSVK+VF+S S K+ P+K  N           K +VEK   E PEVVS
Sbjct: 1   MGKKGGG---WLSSVKKVFKSPS-KESPEKKVNF---------SKADVEKCHNEAPEVVS 47

Query: 61  FEHFPAESSPDVTNDESI----GSTPAE-DRNHAIAVAVATAAAAEAAVAAAQAAAKVVR 115
           FEHFPAESSPDVTND+S     GS+P   DR+HAIAVAVATAAAAEAAVAAAQAAAKVVR
Sbjct: 48  FEHFPAESSPDVTNDDSDREEEGSSPVTGDRSHAIAVAVATAAAAEAAVAAAQAAAKVVR 107

Query: 116 LAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ 175
           LAGYGRHSKE+RAAT+IQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ
Sbjct: 108 LAGYGRHSKEDRAATIIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ 167

Query: 176 ALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRG 235
           ALVRVQARVRARRLQLAHE++Q+    EDE E   +EE    + P+K+  A G W+   G
Sbjct: 168 ALVRVQARVRARRLQLAHEKVQQR--VEDEGERTHEEEQPKTKIPVKKLEAEG-WN---G 221

Query: 236 RHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQE 295
           +HQ SE K+KEN +RKH+++MK+ER+LAYA++YQQQ+     +   N  G     L   E
Sbjct: 222 KHQRSE-KMKENQTRKHDAVMKRERALAYAFSYQQQES----IPSRNDGG-----LNDNE 271

Query: 296 GERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDV 355
            E+ QWGWNWLERWM++QP+H R   P++ SY+ LP         TTD+M SEKTVEMDV
Sbjct: 272 REKSQWGWNWLERWMASQPYHFRQSSPHDPSYMTLP---------TTDNM-SEKTVEMDV 321

Query: 356 ITPPSSSNTKMGRFNRELSDSSSYIPP----QHKPSFSHNVPSYMAPTQSAKAK 405
           I+PP   N   G+  + +   S   P     Q K   S NVPSYMAPT+S +AK
Sbjct: 322 ISPPGLDNIYTGQHGQHVVGDSFRTPTDPTRQLKQPSSDNVPSYMAPTKSTRAK 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143909|emb|CBI23014.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 251/414 (60%), Positives = 295/414 (71%), Gaps = 52/414 (12%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVS 60
           MGKKGGG   W SSVK+VF+S S K+ P+K              K +VEK   E PEVVS
Sbjct: 17  MGKKGGG---WLSSVKKVFKSPS-KESPEKK-------------KADVEKCHNEAPEVVS 59

Query: 61  FEHFPAESSPDVTNDESI----GSTPAE-DRNHAIAVAVATAAAAEAAVAAAQAAAKVVR 115
           FEHFPAESSPDVTND+S     GS+P   DR+HAIAVAVATAAAAEAAVAAAQAAAKVVR
Sbjct: 60  FEHFPAESSPDVTNDDSDREEEGSSPVTGDRSHAIAVAVATAAAAEAAVAAAQAAAKVVR 119

Query: 116 LAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ 175
           LAGYGRHSKE+RAAT+IQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ
Sbjct: 120 LAGYGRHSKEDRAATIIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ 179

Query: 176 ALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRG 235
           ALVRVQARVRARRLQLAHE++Q+    EDE E   +EE    + P+K+  A G W+   G
Sbjct: 180 ALVRVQARVRARRLQLAHEKVQQR--VEDEGERTHEEEQPKTKIPVKKLEAEG-WN---G 233

Query: 236 RHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQE 295
           +HQ SE K+KEN +RKH+++MK+ER+LAYA++YQQQ+     +   N  G     L   E
Sbjct: 234 KHQRSE-KMKENQTRKHDAVMKRERALAYAFSYQQQES----IPSRNDGG-----LNDNE 283

Query: 296 GERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDV 355
            E+ QWGWNWLERWM++QP+H R   P++ SY+ LP         TTD+M SEKTVEMDV
Sbjct: 284 REKSQWGWNWLERWMASQPYHFRQSSPHDPSYMTLP---------TTDNM-SEKTVEMDV 333

Query: 356 ITPPSSSNTKMGRFNRELSDSSSYIPP----QHKPSFSHNVPSYMAPTQSAKAK 405
           I+PP   N   G+  + +   S   P     Q K   S NVPSYMAPT+S +AK
Sbjct: 334 ISPPGLDNIYTGQHGQHVVGDSFRTPTDPTRQLKQPSSDNVPSYMAPTKSTRAK 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509249|ref|XP_003523363.1| PREDICTED: protein IQ-DOMAIN 14-like [Glycine max]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 217/358 (60%), Positives = 254/358 (70%), Gaps = 22/358 (6%)

Query: 50  KWPQEVPEVVSFEHFPAESSPDVTNDESI-GSTPA-EDRNHAIAVAVATAAAAEAAVAAA 107
           +W    PE VS EHFPAESSPD+TN+ S+  STP  ED N A+A A ATAAAAEAAVAAA
Sbjct: 38  QWQHVAPEEVSVEHFPAESSPDLTNEGSVTSSTPVTEDTNPAVAFAAATAAAAEAAVAAA 97

Query: 108 QAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQA 167
           QAAA+VVRLAGYGR SKEERAA LIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQA
Sbjct: 98  QAAARVVRLAGYGRQSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQA 157

Query: 168 QMTMRCMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAA 227
           QMTMRCM ALVRVQ RVRARRL+L  E+LQ+ +V E++ + EVDE  Q   SP+K     
Sbjct: 158 QMTMRCMHALVRVQTRVRARRLELTEEKLQR-RVYEEKVQREVDEPKQFL-SPIKMLDMD 215

Query: 228 GSWDNGRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRD 287
           G WD+ R     + +++K+N  RKHE++MK+ER+LAYA+   QQ +QH H+   +PNG D
Sbjct: 216 G-WDSRR----QTSQQIKDNDLRKHEAVMKRERALAYAFNC-QQLKQHMHI---DPNGDD 266

Query: 288 IVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLS 347
           I   Y+ E ER Q  WNWLERWMS+Q   + NL P E  Y  L      T T+TTDDM  
Sbjct: 267 IGS-YSTERERAQLDWNWLERWMSSQ---SPNLRPRETLYRTL-----ATATSTTDDMSE 317

Query: 348 EKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           EKTVEMD+     S++  MG  N E  D+S      H+   S  VPSYMAPTQSAKAK
Sbjct: 318 EKTVEMDMGATLDSTHANMGFINGESFDTSPISNRYHQRHHSAGVPSYMAPTQSAKAK 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551365|ref|XP_003544046.1| PREDICTED: protein IQ-DOMAIN 1-like [Glycine max]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 248/417 (59%), Positives = 290/417 (69%), Gaps = 44/417 (10%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQEVPEVVS 60
           MGKKGG    WFSSVK+VF+SSS KD PQ      + ++       NV +   EV EVVS
Sbjct: 1   MGKKGGS---WFSSVKKVFKSSS-KDSPQP-----EKKVILSTSYSNVYEQQHEVAEVVS 51

Query: 61  FEHFPAESSPD-VTNDE-SIGSTPA--EDRNHAIAVAVATAAAAEAAVAAAQAAAKVVRL 116
           FEHFPAESSPD V+N E S  STP   EDR+HAIAVA ATAAAAEAAV AAQAAA+VVRL
Sbjct: 52  FEHFPAESSPDNVSNAEMSTTSTPVTNEDRSHAIAVAAATAAAAEAAVVAAQAAARVVRL 111

Query: 117 AG-YGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ 175
           AG YGR SKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ
Sbjct: 112 AGSYGRQSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQ 171

Query: 176 ALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRG 235
           ALVRVQARVRARR QL+H   ++ K KE+     V   +    SPL++      WDN R 
Sbjct: 172 ALVRVQARVRARRFQLSHADQEREK-KEEPKPIPVPVPM----SPLRRIDDINDWDNRR- 225

Query: 236 RHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVELYAQE 295
               S  K+KEN  RKHE++MK+ER+LAYA+ YQQQQQ+       N N  D+   Y  E
Sbjct: 226 ---QSSYKIKENDLRKHEAVMKRERALAYAFNYQQQQQKQFLQPDWNGND-DVGTNY--E 279

Query: 296 GERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPITTTTTTTTTTDDMLSEKTVEMDV 355
            E+ QWGWNWLERWMS+QP++ RN+GP+E SY+ L      +TT+TT D +SEKTVEMD+
Sbjct: 280 HEKAQWGWNWLERWMSSQPYNVRNMGPHETSYMTL-----ASTTSTTTDNMSEKTVEMDM 334

Query: 356 ITPPSSSNTK-MGRFNRELSDSSS------YIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           +  P  +NT+ +   N++  D S       +IPP      S N PSYM PTQSAKAK
Sbjct: 335 VATPGPTNTRNVSPMNQDFVDLSPVSNRHRHIPP------SPNRPSYMTPTQSAKAK 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816152|ref|XP_002875959.1| IQ-domain 21 [Arabidopsis lyrata subsp. lyrata] gi|297321797|gb|EFH52218.1| IQ-domain 21 [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 212/420 (50%), Positives = 267/420 (63%), Gaps = 45/420 (10%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQ--EVPEV 58
           MGKKG GG  WFS+VKR    SS KD  ++  N+  N         N + W Q  +  EV
Sbjct: 1   MGKKGSGG--WFSTVKRKVFKSSPKD-SKRENNIGSN---------NADIWQQQHDTQEV 48

Query: 59  VSFEHFPAESSPDVTND-ESIGSTPAE---DRNHAIAVAVATAAAAEAAVAAAQAAAKVV 114
           VSFE+FPAESSP++++D ES  STPA    DR HA+AVA+ATAAAAEAAVAAA AAAKVV
Sbjct: 49  VSFENFPAESSPEISHDVESTASTPATNVGDRKHAMAVAIATAAAAEAAVAAAHAAAKVV 108

Query: 115 RLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCM 174
           RLAGY R ++E+ AA LIQS+YRGYLARRALRALKGLVRLQALVRG++VRKQAQMTM+CM
Sbjct: 109 RLAGYNRQTEEDSAAVLIQSHYRGYLARRALRALKGLVRLQALVRGNHVRKQAQMTMKCM 168

Query: 175 QALVRVQARVRARRLQLAHERLQKTKVKED-----EDEEEVDEELQNQRSPLKQYAAAGS 229
           QALVRVQ RVRARRLQ+AH+R +K   +E+     E   +V   L+ +R   K+      
Sbjct: 169 QALVRVQGRVRARRLQVAHDRFKKQFEEEEKRSGMEKPNKVFANLKTEREKPKKLHEV-- 226

Query: 230 WDNGRGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIV 289
                  ++ S+ +       + E +MK+ER+LAYAY YQ+Q Q        + NG + +
Sbjct: 227 -------NRTSQYQTPGKEKERSEGMMKRERALAYAYTYQRQMQ--------HTNGEEGI 271

Query: 290 ELYAQEGERGQWGWNWLERWMSAQPHHARNL----GPNEASYVALPITTTTTTTTTTDDM 345
            L +   +R QW WNWL+ WMS+QP+  R      GP + +    P   T   TTT+DD 
Sbjct: 272 GLSSNGPDRNQWAWNWLDHWMSSQPYTGRQTGPAPGPGQYNPPPYPPFPTAAATTTSDD- 330

Query: 346 LSEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           +SEKTVEMDV TP S     +G  +RE  D  SY     +     ++PSYMAPT SAKAK
Sbjct: 331 VSEKTVEMDVTTPTSLKANIIGLIDREYIDLGSYRQGHKQRKSPTHIPSYMAPTASAKAK 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6723396|emb|CAB66405.1| SF16-like protein [Arabidopsis thaliana]

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 212/419 (50%), Positives = 268/419 (63%), Gaps = 43/419 (10%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQ--EVPEV 58
           MGKKG GG  WFS+VK+    SS KD  ++  N+  N         N + W Q  +  EV
Sbjct: 1   MGKKGSGG--WFSTVKKKVFKSSPKD-SKRENNIGSN---------NADIWQQQHDTQEV 48

Query: 59  VSFEHFPAESSPDVTND-ESIGSTPAE---DRNHAIAVAVATAAAAEAAVAAAQAAAKVV 114
           VSFEHFPAESSP++++D ES  STPA    DR HA+AVA+ATAAAAEAAVAAAQAAAKVV
Sbjct: 49  VSFEHFPAESSPEISHDVESTASTPATNVGDRKHAMAVAIATAAAAEAAVAAAQAAAKVV 108

Query: 115 RLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCM 174
           RLAGY R ++E+ AA LIQS+YRGYLARRALRALKGLVRLQALVRG++VRKQAQMTM+CM
Sbjct: 109 RLAGYNRQTEEDSAAVLIQSHYRGYLARRALRALKGLVRLQALVRGNHVRKQAQMTMKCM 168

Query: 175 QALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGS-WDNG 233
           QALVRVQ RVRARRLQ+AH+R +K        + E +E+      P K +A   +  +  
Sbjct: 169 QALVRVQGRVRARRLQVAHDRFKK--------QFEEEEKRSGMEKPNKGFANLKTEREKP 220

Query: 234 RGRHQNSEKKLKENASR---KHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVE 290
           +  H+ +   L +   +   + E +MK+ER+LAYAY YQ+Q Q        + N  + + 
Sbjct: 221 KKLHEVNRTSLYQTQGKEKERSEGMMKRERALAYAYTYQRQMQ--------HTNSEEGIG 272

Query: 291 LYAQEGERGQWGWNWLERWMSAQPHHARNL----GPNEASYVALPITTTTTTTTTTDDML 346
           L +   +R QW WNWL+ WMS+QP+  R      GP + +    P   T   TTT+DD +
Sbjct: 273 LSSNGPDRNQWAWNWLDHWMSSQPYTGRQTGPGPGPGQYNPPPYPPFPTAAATTTSDD-V 331

Query: 347 SEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           SEKTVEMDV TP S     +G  +RE  D  SY     +     ++PSYMAPT SAKAK
Sbjct: 332 SEKTVEMDVTTPTSLKGNIIGLIDREYIDLGSYRQGHKQRKSPTHIPSYMAPTASAKAK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408809|ref|NP_566917.1| protein IQ-domain 21 [Arabidopsis thaliana] gi|42572619|ref|NP_974405.1| protein IQ-domain 21 [Arabidopsis thaliana] gi|13605619|gb|AAK32803.1|AF361635_1 AT3g49260/F2K15_120 [Arabidopsis thaliana] gi|21593446|gb|AAM65413.1| SF16-like protein [Arabidopsis thaliana] gi|23308403|gb|AAN18171.1| At3g49260/F2K15_120 [Arabidopsis thaliana] gi|39980284|gb|AAR32943.1| guard cell associated protein [Arabidopsis thaliana] gi|332644995|gb|AEE78516.1| protein IQ-domain 21 [Arabidopsis thaliana] gi|332644996|gb|AEE78517.1| protein IQ-domain 21 [Arabidopsis thaliana]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 212/419 (50%), Positives = 268/419 (63%), Gaps = 43/419 (10%)

Query: 1   MGKKGGGGNGWFSSVKRVFQSSSNKDLPQKSCNLYQNRIRFLGVKENVEKWPQ--EVPEV 58
           MGKKG GG  WFS+VK+    SS KD  ++  N+  N         N + W Q  +  EV
Sbjct: 1   MGKKGSGG--WFSTVKKKVFKSSPKD-SKRENNIGSN---------NADIWQQQHDTQEV 48

Query: 59  VSFEHFPAESSPDVTND-ESIGSTPAE---DRNHAIAVAVATAAAAEAAVAAAQAAAKVV 114
           VSFEHFPAESSP++++D ES  STPA    DR HA+AVA+ATAAAAEAAVAAAQAAAKVV
Sbjct: 49  VSFEHFPAESSPEISHDVESTASTPATNVGDRKHAMAVAIATAAAAEAAVAAAQAAAKVV 108

Query: 115 RLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCM 174
           RLAGY R ++E+ AA LIQS+YRGYLARRALRALKGLVRLQALVRG++VRKQAQMTM+CM
Sbjct: 109 RLAGYNRQTEEDSAAVLIQSHYRGYLARRALRALKGLVRLQALVRGNHVRKQAQMTMKCM 168

Query: 175 QALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGS-WDNG 233
           QALVRVQ RVRARRLQ+AH+R +K        + E +E+      P K +A   +  +  
Sbjct: 169 QALVRVQGRVRARRLQVAHDRFKK--------QFEEEEKRSGMEKPNKGFANLKTEREKP 220

Query: 234 RGRHQNSEKKLKENASR---KHESLMKKERSLAYAYAYQQQQQQHQHLSQSNPNGRDIVE 290
           +  H+ +   L +   +   + E +MK+ER+LAYAY YQ+Q Q        + N  + + 
Sbjct: 221 KKLHEVNRTSLYQTQGKEKERSEGMMKRERALAYAYTYQRQMQ--------HTNSEEGIG 272

Query: 291 LYAQEGERGQWGWNWLERWMSAQPHHARNL----GPNEASYVALPITTTTTTTTTTDDML 346
           L +   +R QW WNWL+ WMS+QP+  R      GP + +    P   T   TTT+DD +
Sbjct: 273 LSSNGPDRNQWAWNWLDHWMSSQPYTGRQTGPGPGPGQYNPPPYPPFPTAAATTTSDD-V 331

Query: 347 SEKTVEMDVITPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           SEKTVEMDV TP S     +G  +RE  D  SY     +     ++PSYMAPT SAKAK
Sbjct: 332 SEKTVEMDVTTPTSLKGNIIGLIDREYIDLGSYRQGHKQRKSPTHIPSYMAPTASAKAK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.441	0.430	0.238	5.6e-10
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.138	0.132	0.446	3.9e-09
TAIR|locus:2200945	527	IQD18 "AT1G01110" [Arabidopsis	0.451	0.347	0.235	5.7e-08
TAIR|locus:2030225	414	iqd8 "AT1G72670" [Arabidopsis	0.244	0.239	0.309	6.9e-08
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.061	0.058	0.56	2.3e-07
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.730	0.554	0.189	1.9e-06
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.202	0.177	0.279	4.5e-05

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
 Identities = 46/193 (23%), Positives = 77/193 (39%)

Query:   218 RSPLKQYAAAGSWDNGRGRHQNSEKKLKENASRKHESLMKKERXXXXXXXXXXXXXXXXX 277
             +S L +    G W + +G   + + KL++    + E   K+ER                 
Sbjct:   166 KSDLLKEVEEG-WCDRKGTVDDIKSKLQQ----RQEGAFKRERALAYALAQKQWRSTTSS 220

Query:   278 XXXXNPNGRDIVELYAQEGERGQWGWNWLERWMSAQPHHARNLGPNEASYVALPIXXXXX 337
                 N +   I  L +QE ++  WGW+WLERWM+A+P   R +   + +    P+     
Sbjct:   221 NLKTNSS---ISYLKSQEFDKNSWGWSWLERWMAARPWETRLMDTVDTAATPPPLPHKHL 277

Query:   338 XXXXXDDMLSEK----TVEMDVITPPSSSNTKMG-RFNRELSDSSSYIPPQHKPSFSHNV 392
                   D++  +    T  +    PP   ++  G  FN E S SSS        S    +
Sbjct:   278 KSPETADVVQVRRNNVTTRVSAKPPPHMLSSSPGYEFN-ESSGSSSICTSTTPVSGKTGL 336

Query:   393 PSYMAPTQSAKAK 405
              S  + +Q+ K K
Sbjct:   337 VSDNSSSQAKKHK 349

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
 Identities = 25/56 (44%), Positives = 29/56 (51%)

Query:   119 YGRHSKEERAATLIQSXXXXXXXXXXXXXXXXXXXXQALVRGHNVRKQAQMTMRCM 174
             Y   S+E RAAT IQ+                    QALVRGH VRKQA +T+RCM
Sbjct:    81 YDEQSRENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCM 136

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
 Identities = 47/200 (23%), Positives = 78/200 (39%)

Query:   122 HSKEERAATLIQSXXXXXXXXXXXXXXXXXXXXQALVRGHNVRKQAQMTMRCMXXXXXXX 181
             +++E  AA +IQ+                    QALVRGHNVRKQA+MT+RCM       
Sbjct:   117 YARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQ 176

Query:   182 XXXXXXXXXXXHERLQKTXXXXXXXXXXXXXX--LQNQRSPLKQ-YAAAGSWDNGRGRHQ 238
                        H+  +K+                L +++S  ++  +AA  WD+      
Sbjct:   177 SRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDD----RP 232

Query:   239 NSEKKLKENASRKHESLMKKERXXXXXXXXXXXXXXXXXXXXXNPNGRDIVELYAQEGER 298
             ++   +K    R+ ++ ++ ++                        G   VEL   E ER
Sbjct:   233 HTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQST---EGHHEVEL---EEER 286

Query:   299 GQWGWNWLERWMSAQPHHAR 318
              +W    L+RWM+ +P   R
Sbjct:   287 PKW----LDRWMATRPWDKR 302

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030225 iqd8 "AT1G72670" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
 Identities = 34/110 (30%), Positives = 46/110 (41%)

Query:   302 GWNWLERWMSAQPHHARNL-GPNEASYVALPIXXXXXXXXXXDDMLSEKTVEMDVITPPS 360
             GWNWL+RW++ +P   R + GP  +S  A                 +  T  +    PP 
Sbjct:   247 GWNWLDRWVADRPWEGRLMEGPTNSSENARKSESSVSEHDTVQVRKNNLTTRVLARPPPM 306

Query:   361 SSNTKMGRFNRELSDSSSYIPPQHKPSFS-----HNVPSYMAPTQSAKAK 405
             SS+          S S+S  P     SF      +  PSYM+ TQS KAK
Sbjct:   307 SSSATSSE-----SSSTSQSPVPFSGSFLEEGGYYRKPSYMSLTQSIKAK 351

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query:   301 WGWNWLERWMSAQPHHARNLGPNEA 325
             WGW+WLERWM+A+P+   +L P+ A
Sbjct:   256 WGWSWLERWMAARPNENHSLTPDNA 280

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 63/332 (18%), Positives = 117/332 (35%)

Query:     1 MXXXXXXXXXWFSSVKRVFQSSSNKDLPQKSCNLYQNRI-RFLGVKENVEKW------PQ 53
             M         W ++VKR F+S + K+    + N + N +      K+   +W        
Sbjct:     1 MGKKSGSSSSWLTAVKRAFRSPTKKE---HNNNAHGNEVDEDEDKKKEKRRWLFRKSTNH 57

Query:    54 EVPEVVSF--EHFPAESSPDVTN--DESIGSTPAEDRNHXXXXXXXXXXXXXXXXXXXXX 109
             + P   S   +  PA+ S + T   + ++ S+  E R                       
Sbjct:    58 DSPVKTSGVGKDAPAQKSTETTTIINPTVLSSVTEQRYDASTPPATVSAASETHPPSTTK 117

Query:   110 XXXXXXXXGYGRHSKEERAATLIQSXXXXXXXXXXXXXXXXXXXXQALVRGHNVRKQAQM 169
                      Y   ++E+ AA +IQ+                    QALVRGHNVRKQA+M
Sbjct:   118 ELPNLTRRTYT--AREDYAAVVIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKM 175

Query:   170 TMRCMXXXXXXXXXXXXXXXXXXHERLQKTXXXXXXXXXXXXXX--LQNQRSPLKQYAA- 226
             T+RCM                  H+  +K+                + ++RS  ++ ++ 
Sbjct:   176 TLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDTQSVLESRYLQEISDRRSMSREGSSI 235

Query:   227 AGSWDNGRGRHQNSEKKLKENASRKHESLMKKERXXXXXXXXXXXXXXXXXXXXXNPNGR 286
             A  WD+      ++ +++K    ++ ++ +++E                           
Sbjct:   236 AEDWDD----RPHTIEEVKAMLQQRRDNALRRESNNSISQAFSHQVRRTRGSYSTGDE-- 289

Query:   287 DIVELYAQEGERGQWGWNWLERWMSAQPHHAR 318
                  Y +E  +      WL+RWM+++P   R
Sbjct:   290 -----YEEERPK------WLDRWMASKPWDKR 310

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
 Identities = 26/93 (27%), Positives = 38/93 (40%)

Query:   222 KQYAAAGSWDNGRGRHQNSEKKLKENASRKHESLMKKERXXXXXXXXXXXXXXXXXXXXX 281
             K+ A   + DN     Q+ EK ++ N   K+E+ M++ER                     
Sbjct:   197 KELAGLKNGDNWNDSIQSKEK-VEANLLSKYEATMRRERALAYSYSHQQNWKNNSKSG-- 253

Query:   282 NPNGRDIVELYAQEGERGQWGWNWLERWMSAQP 314
             NP   D             WGW+WLERWM+ +P
Sbjct:   254 NPMFMD--------PSNPTWGWSWLERWMAGRP 278

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00150136 hypothetical protein (460 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
smart00015	23	smart00015, IQ, Calmodulin-binding motif	2e-05
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	2e-04
pfam13178	105	pfam13178, DUF4005, Protein of unknown function (D	2e-04
cd07138	466	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-ox	6e-04

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 40.4 bits (96), Expect = 2e-05
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 124 KEERAATLIQSYYRGYLARRALR 146
           +  RAA +IQ+ +RGYLAR+  +
Sbjct: 1   RLTRAAIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 126 ERAATLIQSYYRGYLARRALR 146
            +AA  IQ+ +RGYLAR+  +
Sbjct: 1   RKAAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 357 TPPSSSNTKMGRFNRELSDSSSYIPPQHKPSFSHNVPSYMAPTQSAKAK 405
           TP   S++         S+ +      +  + S ++P+YMA T+SAKAK
Sbjct: 2   TPRLLSSSSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAK 50

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 92  VAVATAAAAEAAVAAAQAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARR 143
           V + TAA  + AVAAA+ A        +   S EERAA L++     Y AR 
Sbjct: 30  VPLGTAADVDRAVAAARRA-----FPAWSATSVEERAA-LLERIAEAYEARA 75

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD. Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.8
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.79
PF13178	102	DUF4005: Protein of unknown function (DUF4005)	97.6
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.3
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.96
PTZ00014	821	myosin-A; Provisional	96.47
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.41
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.07
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	95.63
COG5022	1463	Myosin heavy chain [Cytoskeleton]	95.3
smart00015	26	IQ Short calmodulin-binding motif containing conse	94.31
PTZ00014	821	myosin-A; Provisional	93.47
KOG2128	1401	consensus Ras GTPase-activating protein family - I	93.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	90.7
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	81.39

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.80  E-value=2.5e-05  Score=48.43  Aligned_cols=21  Identities=57%  Similarity=1.045  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhhhHHHHHHH
Q 037367          126 ERAATLIQSYYRGYLARRALR  146 (405)
Q Consensus       126 e~AAI~IQsafRGyLaRr~yr  146 (405)
                      +.|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999873

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.79  E-value=8.6e-05  Score=83.02  Aligned_cols=67  Identities=27%  Similarity=0.312  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          123 SKEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAH  193 (405)
Q Consensus       123 ~ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~  193 (405)
                      .....+++.||+.+|||+.|+.| +.+++++.||+++||+++|+..   + ...|++.||..+|++..|+..
T Consensus       670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y  737 (862)
T KOG0160|consen  670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRY  737 (862)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHH
Confidence            34567888899999999999999 8899999999999999999822   2 556777777777777766543

>PF13178 DUF4005: Protein of unknown function (DUF4005)

Probab=97.60  E-value=4.9e-05  Score=64.89  Aligned_cols=14  Identities=79%  Similarity=1.047  Sum_probs=13.8

Q ss_pred             CCCCcccccccccC
Q 037367          392 VPSYMAPTQSAKAK  405 (405)
Q Consensus       392 ~PsYMa~TqSakAK  405 (405)
                      +|+|||+|||||||
T Consensus        34 ~PsYMa~TeSakAK   47 (102)
T PF13178_consen   34 LPSYMAATESAKAK   47 (102)
T ss_pred             CCCccchhhhhhhh
Confidence            99999999999998

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.30  E-value=0.00023  Score=46.20  Aligned_cols=21  Identities=52%  Similarity=0.806  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL  145 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y  145 (405)
                      .+.+|++||+.||||++|+.|
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            467899999999999999988

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.96  E-value=0.004  Score=70.03  Aligned_cols=67  Identities=27%  Similarity=0.280  Sum_probs=59.1

Q ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          122 HSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL  191 (405)
Q Consensus       122 ~~ree~AAI~IQsafRGyLaRr~yr~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~  191 (405)
                      +.....+++.||+.+||+++|+......+++.||..+|+++.|++|   .....+++.||+.+|++..|.
T Consensus       692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence            5577889999999999999998444567889999999999999999   456779999999999999987

>PTZ00014 myosin-A; Provisional

Probab=96.47  E-value=0.0045  Score=69.71  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHH
Q 037367          127 RAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       127 ~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~  167 (405)
                      ..++.||++||||++|+.| +.+.++++||+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4678888888888888888 5677888888888888887653

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.41  E-value=0.002  Score=72.90  Aligned_cols=70  Identities=29%  Similarity=0.375  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMT-------MRCMQALVRVQARVRARRLQLAHE  194 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~t-------Lr~~qAavrIQa~vR~~r~R~s~e  194 (405)
                      -..||..||..||||+.|+.| -.+.-+|+||+.+||+.+|++|...       -...-++-++|+.+|+++.+...|
T Consensus       809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e  886 (975)
T KOG0520|consen  809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE  886 (975)
T ss_pred             chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence            456999999999999999999 7778899999999999999999521       134556778899999988776544

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.07  E-value=0.0079  Score=37.20  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhhHHHHHHH
Q 037367          149 KGLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       149 k~iVrLQAlvRG~lvRrq~  167 (405)
                      +++|.||+.|||+++|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            5788999999999998876

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=95.63  E-value=0.03  Score=61.93  Aligned_cols=56  Identities=23%  Similarity=0.324  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL  191 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~  191 (405)
                      .-.-++.||++|||+++|.+| +++.+++.|+ ++|.+.++-          .+..||.++|+++.+.
T Consensus       695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r  751 (1001)
T KOG0164|consen  695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMR  751 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcc
Confidence            345789999999999999999 5555555556 888555443          3346788888887665

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=95.30  E-value=0.055  Score=63.63  Aligned_cols=44  Identities=34%  Similarity=0.470  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHH
Q 037367          124 KEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       124 ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~  167 (405)
                      .....++.||++|||++.|++| +..+.+..+|.+.+|..+++.+
T Consensus       743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~  787 (1463)
T COG5022         743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV  787 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence            5678999999999999999999 7777776677766766666543

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=94.31  E-value=0.054  Score=35.01  Aligned_cols=20  Identities=30%  Similarity=0.316  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHH
Q 037367          148 LKGLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       148 lk~iVrLQAlvRG~lvRrq~  167 (405)
                      .++++.||+.+||+++|+++
T Consensus         3 ~~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        3 TRAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            46788899999999998877

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=93.47  E-value=0.2  Score=56.74  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          149 KGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL  191 (405)
Q Consensus       149 k~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~  191 (405)
                      ..++.||+++||+++|+++   ++..+++++||+.+|++..++
T Consensus       778 ~~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            3577899999999999998   455789999999999999875

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=93.31  E-value=0.23  Score=58.38  Aligned_cols=71  Identities=27%  Similarity=0.343  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHhhhHH---HHHH--HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          124 KEERAATLIQSYYRGYLA---RRAL--RALKGLVRLQALVRGHNVRKQAQMT----MRCMQALVRVQARVRARRLQLAHE  194 (405)
Q Consensus       124 ree~AAI~IQsafRGyLa---Rr~y--r~lk~iVrLQAlvRG~lvRrq~~~t----Lr~~qAavrIQa~vR~~r~R~s~e  194 (405)
                      ......+-||..+|||+.   +..|  ...+-+|.+|++.||+++|+.+...    ..+|.+.+.||+.+|.+..|..-.
T Consensus       563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~  642 (1401)
T KOG2128|consen  563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK  642 (1401)
T ss_pred             hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence            466788999999999994   2223  5678999999999999999988643    369999999999999999886443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=90.70  E-value=0.29  Score=55.99  Aligned_cols=65  Identities=31%  Similarity=0.338  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHH--------HH---HHHHHHHHHhhHHHHHHHH----------------------HHHH
Q 037367          126 ERAATLIQSYYRGYLARRALRA--------LK---GLVRLQALVRGHNVRKQAQ----------------------MTMR  172 (405)
Q Consensus       126 e~AAI~IQsafRGyLaRr~yr~--------lk---~iVrLQAlvRG~lvRrq~~----------------------~tLr  172 (405)
                      ..-+|+||+++|||-.|+.|+.        .+   ..-++|.-+||+..++.+.                      ...+
T Consensus       833 r~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r  912 (975)
T KOG0520|consen  833 RQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEER  912 (975)
T ss_pred             CCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999998821        12   2335677778876544221                      1235


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037367          173 CMQALVRVQARVRARRLQ  190 (405)
Q Consensus       173 ~~qAavrIQa~vR~~r~R  190 (405)
                      ..+|+++||+.+|.+..+
T Consensus       913 ~~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  913 LTRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHHHhcCHHHH
Confidence            677888899888887766

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.39  E-value=2.9  Score=47.21  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=21.6

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHH
Q 037367          123 SKEERAATLIQSYYRGYLARRAL  145 (405)
Q Consensus       123 ~ree~AAI~IQsafRGyLaRr~y  145 (405)
                      .+.+.||+.||..+|||++|++|
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~   49 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKA   49 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-10
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-09
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-09
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
4e3x_A	563	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit	5e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 121 RHSKEERAATLIQSYYRGYLARRA-LRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVR 179
           R  K   A   IQ   RG+L R+  +R  +  + +Q  VRGH  R  A   +R  +A + 
Sbjct: 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAII 821

Query: 180 VQARVRARRLQLAHERLQ------KTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNG 233
           +Q   R   ++  ++ ++      +  ++      +    L+  +S + Q    G     
Sbjct: 822 IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA-- 879

Query: 234 RGRHQNSEKKLKENASRKHESLMKKE 259
           R  +  + K +          + K+E
Sbjct: 880 RVHYHRTLKAIVYLQCCYRRMMAKRE 905

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 124 KEERAATLIQSYYRGYLARRALRALK-GLVRLQALVRGHNVRKQAQMTMRCMQALVRVQA 182
           +  RAA +IQ + R Y+ R+  + ++   + LQAL+RG+ VR + QM M      + +Q 
Sbjct: 814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQK 872

Query: 183 RVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQNSEK 242
            VR    ++ + R      K     +     +  +R   K    A S +  +  H   E 
Sbjct: 873 HVRGWLARVHYHRTL----KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 243 KLKENASR------KHESLMKKERSL 262
           K+ +   +      +++SL++K  +L
Sbjct: 929 KIMQLQRKIDEQNKEYKSLLEKMNNL 954

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 105 AAAQAAAKVVRLAGYGRHSKEER-AATLIQSYYRGYLAR---RALRALKGLVRLQALVRG 160
            AA    K  R+    +  +  R A   +Q+  RGYL R   + +      + +Q  VRG
Sbjct: 817 RAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG 876

Query: 161 HNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSP 220
              R     T++   A+V +Q   R    +   ++L K + +  E  +++   L+N+   
Sbjct: 877 WLARVHYHRTLK---AIVYLQCCYRRMMAKRELKKL-KIEARSVERYKKLHIGLENKIMQ 932

Query: 221 LKQYAAAGSWDNGRGRHQNSEKKLKENASRKHESLMKKERS 261
           L++          +   QN E K         E     E  
Sbjct: 933 LQR----------KIDEQNKEYKSLLEKMNNLEITYSTETE 963

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 14/162 (8%)

Query: 121 RHSKEERAATLI--QSYYRGYLARRA----LRALKGLVRLQALVRGHNVRKQAQMTMRCM 174
           R S++ ++  L       +    ++A          +  +Q+ +  H   K+ +      
Sbjct: 754 RASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE-KPPKG 812

Query: 175 QALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGR 234
           Q +  ++A   + + +L   + +           E+D          +++A         
Sbjct: 813 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE-------A 865

Query: 235 GRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQ 276
            R +   +K      +K+  ++KK  + A   +      +  
Sbjct: 866 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETG 907

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 11/163 (6%), Positives = 41/163 (25%), Gaps = 5/163 (3%)

Query: 119 YGRHSKEERAATLIQSYYRGYLARRALRAL---KGLVRLQALVRGHNVRKQAQMTMRCMQ 175
                    +   +QS+   +   +        + +  L+A+      + +       + 
Sbjct: 780 SLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVA 839

Query: 176 ALVRVQARVRARR--LQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNG 233
                   + +    L+ A +   +    E + ++++   LQ     LK+     +  + 
Sbjct: 840 PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSV 899

Query: 234 RGRHQNSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQ 276
                 +   +    ++            +             
Sbjct: 900 YLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 18/178 (10%), Positives = 53/178 (29%), Gaps = 20/178 (11%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRALKGLVR---------------LQALVRGHNVRK 165
               + +  + +++ Y     +  L   +  V                L+   + H    
Sbjct: 807 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 866

Query: 166 QAQMTMRCMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYA 225
           + ++  R  +  V +Q   R    +L +    K+      +  +    +Q +   L+ + 
Sbjct: 867 RIEL-KRQKKIAVLLQKYNR-ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFD 924

Query: 226 AAGSWDNGRGRHQ--NSEKKLKENASRKHESLMKKERSLAYAYAYQQQQQQHQHLSQS 281
                  G+      +   +L E        L +++ +   A  +   +   +    +
Sbjct: 925 GECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFF-AQQWTGVKSSAETYKNT 981

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 18/153 (11%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRALK----------GLVRLQALVRGHNVRKQAQMT 170
           R  +     T      R     + +   +           +  +Q+ +  H   K+ +  
Sbjct: 758 REQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE-K 816

Query: 171 MRCMQALVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSW 230
               Q +  ++A   + + +L   + +           E+D          +++A     
Sbjct: 817 PPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE---- 872

Query: 231 DNGRGRHQNSEKKLKENASRKHESLMKKERSLA 263
                R +   +K      +K+  ++KK  + A
Sbjct: 873 ---ALRIELKRQKKIAVLLQKYNRILKKLENWA 902

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 124 KEERAATLIQSYYRGYLARRA-LRALKGLVRLQALVRGHNVRKQAQMTMRCMQA 176
           K   A   IQ   RG+L R+  L   +  + +Q  VRG+  R  A+  +R  +A
Sbjct: 3   KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKA 55

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRALK----GLVRLQALVRGHNVRKQAQMTMRCMQA 176
           R  K        Q+  RGYLAR+A    +     +  +Q  VR                 
Sbjct: 787 RDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXI 846

Query: 177 LVRVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGR 236
              ++   +   +Q   E LQ+TK ++ + E E+ +EL+ + + L +        N    
Sbjct: 847 XPLLKVTRQEEEMQAKDEELQRTKERQQKAEAEL-KELEQKHTQLCEEK------NLLQE 899

Query: 237 HQNSEKKLKENASRKHESLMKKERSL 262
              +E +L   A      L  K++ L
Sbjct: 900 KLQAETELYAEAEEMRVRLAAKKQEL 925

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 18/145 (12%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 119 YGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALV 178
           + +  ++  +   IQ   R ++       +     +  L++     ++ Q     +Q   
Sbjct: 811 FAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTK 870

Query: 179 RVQARVRARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQ 238
             Q +  A       + L++   +  E++  + E+LQ +     +          R R  
Sbjct: 871 ERQQKAEAEL-----KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM------RVRLA 919

Query: 239 NSEKKLKENASRKHESLMKKERSLA 263
             +++L+E        + ++E    
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQ 944

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRALK----GLVRLQALVRGHNVRKQAQMTMRCMQA 176
           R  +  +  ++ Q++ RGYL R+A + L+    GL  +Q  +R   V +  Q      + 
Sbjct: 774 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW----WKL 829

Query: 177 LVRVQA 182
             +V+ 
Sbjct: 830 YSKVKP 835

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 185 RARRLQLAHERLQKTKVKEDEDEEEVDEELQNQRSPLKQYAAAGSWDNGRGRHQNSEKKL 244
           +A RL    E ++K + ++ +  +E+D   +      ++  A    +    R     +K 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE-KAKKDLEEWNQRQSEQVEKN 134

Query: 245 KENASRKHESLMKKERS 261
           K N +R  +    ++  
Sbjct: 135 KIN-NRIADKAFYQQPD 150

>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A Length = 563

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 37  NRIRFLGVKENVEKWPQEVPEVVSFEHFPAESSPDVTNDESIGSTPAEDRNHAIA-VAVA 95
            R       ++++   + +P VV  E           +       P  +  H +A    A
Sbjct: 46  ERDALQKALKDLKGQTEAIPCVVGDEEVWTSDIQYQLS-------PF-NHAHKVAKFCYA 97

Query: 96  TAAAAEAAVAAAQAAAKV-VRLAGYGRHSKEERAATLIQSYYRGYL 140
             A    A+ AA AA K         R     +AA ++    R  +
Sbjct: 98  DKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEV 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.21
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.03
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.87
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.83
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.49
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.09
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.51
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.47
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.38
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.36
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.33
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.33
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.04
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	95.93
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	95.43
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.42
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	89.34
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	87.31
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	86.83
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	82.27

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.21  E-value=3.2e-11  Score=90.69  Aligned_cols=54  Identities=30%  Similarity=0.332  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037367          124 KEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALV  178 (405)
Q Consensus       124 ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAav  178 (405)
                      +.+.|||+||+.||||++|+.| ..+.+++.||+++||+++|+.+ ..++...|++
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA~   57 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAAT   57 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCcc
Confidence            5788999999999999999999 7778999999999999999999 5666666654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.03  E-value=4.9e-10  Score=125.98  Aligned_cols=90  Identities=26%  Similarity=0.287  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 037367          103 AVAAAQAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQ  181 (405)
Q Consensus       103 av~aaqaA~~vvrl~~~~~~~ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQ  181 (405)
                      |+..+|+..+++..+..-...++..||++||++||||++|+.| +.+.+++.||+++||+++|+.+ ..++...+++.||
T Consensus       793 aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ  871 (1080)
T 2dfs_A          793 AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQ  871 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4445666666665443333456788999999999999999999 7788999999999999999988 5566667888888


Q ss_pred             HHHHHHHHHHHH
Q 037367          182 ARVRARRLQLAH  193 (405)
Q Consensus       182 a~vR~~r~R~s~  193 (405)
                      +.+|++++|...
T Consensus       872 ~~~Rg~l~R~~y  883 (1080)
T 2dfs_A          872 KHVRGWLARVHY  883 (1080)
T ss_dssp             HHHTTTHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            888888777543

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.87  E-value=4e-09  Score=76.21  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHH-HHHH--HHHHHHHHHhhHHHHHHH
Q 037367          126 ERAATLIQSYYRGYLARRAL-RALK--GLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       126 e~AAI~IQsafRGyLaRr~y-r~lk--~iVrLQAlvRG~lvRrq~  167 (405)
                      ..+||.||+.||||++|+.| ..+.  +++.||+++||+++|+.+
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            35899999999999999998 3333  888999999999998876

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.83  E-value=1.1e-08  Score=114.99  Aligned_cols=67  Identities=28%  Similarity=0.350  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          126 ERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAH  193 (405)
Q Consensus       126 e~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~  193 (405)
                      ..+|+.||++||||++|+.| +.+.+++.||+++||+++|+++ ..++...|+++||+.||+|++|+..
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y  835 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRY  835 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHH
Confidence            45666666666666666666 5556666666666666666666 4455566666666666666666543

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.49  E-value=3.1e-07  Score=66.18  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          148 LKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA  192 (405)
Q Consensus       148 lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s  192 (405)
                      +.+++.||+.+||+++|+.+ ..++...|++.||+.+||+.+|..
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~   46 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRAN   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHh
Confidence            57899999999999999999 667778899999999999998863

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.09  E-value=1.2e-05  Score=60.06  Aligned_cols=47  Identities=26%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          147 ALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERL  196 (405)
Q Consensus       147 ~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~e~~  196 (405)
                      ...+++.||+.+||+++|+.|   +....+++.||+.+||+.+|.....+
T Consensus         4 ~~~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~~~~   50 (58)
T 2ix7_C            4 LRAACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYAKFL   50 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999   34457999999999999999866543

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.51  E-value=0.00021  Score=54.50  Aligned_cols=42  Identities=29%  Similarity=0.406  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH-HH---HHHHHHHHHHHhhHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL-RA---LKGLVRLQALVRGHNVRKQ  166 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y-r~---lk~iVrLQAlvRG~lvRrq  166 (405)
                      ....++.||+.+|||++|+.| +.   ..++..||..+|+++.++.
T Consensus         5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            344566666666666666666 21   3455566666666665543

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.47  E-value=0.00016  Score=55.01  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhhhHHHHHH-HH---HHHHHHHHHHHhhHHHHH
Q 037367          127 RAATLIQSYYRGYLARRAL-RA---LKGLVRLQALVRGHNVRK  165 (405)
Q Consensus       127 ~AAI~IQsafRGyLaRr~y-r~---lk~iVrLQAlvRG~lvRr  165 (405)
                      ..++.||+.+|||++|+.| +.   ..++..||..+|+++.++
T Consensus         5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3455555555555555555 11   334444455555554443

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.38  E-value=0.00054  Score=52.17  Aligned_cols=45  Identities=22%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          148 LKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA  192 (405)
Q Consensus       148 lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s  192 (405)
                      ...++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus         6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            456899999999999999997766778888899999999988763

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.36  E-value=0.00013  Score=49.06  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHH
Q 037367          123 SKEERAATLIQSYYRGYLARRAL  145 (405)
Q Consensus       123 ~ree~AAI~IQsafRGyLaRr~y  145 (405)
                      .+|+.||++||.+||+|+.|+.+
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~   25 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSL   25 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999764

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.33  E-value=0.00047  Score=52.39  Aligned_cols=45  Identities=20%  Similarity=0.026  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          148 LKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA  192 (405)
Q Consensus       148 lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s  192 (405)
                      ...++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus         4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~   48 (63)
T 2bl0_A            4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN   48 (63)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            356889999999999999997766778888899999999988763

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.33  E-value=9.9e-05  Score=48.18  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHH
Q 037367          123 SKEERAATLIQSYYRGYLARRA  144 (405)
Q Consensus       123 ~ree~AAI~IQsafRGyLaRr~  144 (405)
                      .+++.||++||.+||+||.++.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999999999853

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.13  E-value=0.00065  Score=74.90  Aligned_cols=44  Identities=27%  Similarity=0.381  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHH-HH---HHHHHHHHHHHhhHHHHHHH
Q 037367          124 KEERAATLIQSYYRGYLARRAL-RA---LKGLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       124 ree~AAI~IQsafRGyLaRr~y-r~---lk~iVrLQAlvRG~lvRrq~  167 (405)
                      +...+|+.||++||||++|+.| +.   +.+++.||+.+||+++||..
T Consensus       777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            4456788999999999999998 33   57888899999999888876

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.04  E-value=0.0073  Score=68.55  Aligned_cols=42  Identities=29%  Similarity=0.366  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH-H---HHHHHHHHHHHHhhHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL-R---ALKGLVRLQALVRGHNVRKQ  166 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y-r---~lk~iVrLQAlvRG~lvRrq  166 (405)
                      ...+++.||++||||++|+.| +   .+.+++.||+.+||++.++.
T Consensus       791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346899999999999999999 3   24789999999999999865

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=95.93  E-value=0.016  Score=63.95  Aligned_cols=47  Identities=23%  Similarity=0.165  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          146 RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA  192 (405)
Q Consensus       146 r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s  192 (405)
                      +....++.||+++||+++|+++...+....|++.||+.+|++..++.
T Consensus       777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~  823 (837)
T 1kk8_A          777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  823 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44567889999999999999995444556899999999999998864

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=95.43  E-value=0.027  Score=50.18  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             HHHHHHHhccCCchhhHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHH
Q 037367          109 AAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRA-LKGLVRLQALV  158 (405)
Q Consensus       109 aA~~vvrl~~~~~~~ree~AAI~IQsafRGyLaRr~yr~-lk~iVrLQAlv  158 (405)
                      ++--|++|..  ...=+..|+|+||+.+||||+|+.++- ..|+.++.++.
T Consensus        30 ~~lsvIKLkn--KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           30 CSLSVIKLKN--KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4555666552  233456788888888888888888833 36666666553

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.42  E-value=0.066  Score=60.81  Aligned_cols=46  Identities=20%  Similarity=0.166  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          147 ALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA  192 (405)
Q Consensus       147 ~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s  192 (405)
                      ....++.||+.|||+++|++|...+....|++.||+.+|+|..++.
T Consensus       791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3467889999999999999996555567899999999999988753

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=89.34  E-value=0.45  Score=53.82  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQ  166 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq  166 (405)
                      ...+|+.||. +|||++|++| +++.+++.||.+.|+...|+.
T Consensus       774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~  815 (1052)
T 4anj_A          774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE  815 (1052)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777775 7999999999 778888999988888766554

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=87.31  E-value=0.33  Score=53.30  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL  145 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y  145 (405)
                      ...+|+.||++||||++|++|
T Consensus       767 l~~~~~~iQ~~~Rg~l~R~~~  787 (795)
T 1w7j_A          767 LRAACIRIQKTIRGWLMRKKY  787 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            446788888888888888888

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=86.83  E-value=0.43  Score=43.23  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHH
Q 037367          123 SKEERAATLIQSYYRGYLARRALR  146 (405)
Q Consensus       123 ~ree~AAI~IQsafRGyLaRr~yr  146 (405)
                      .+++.||++||.+||.|+.|+.++
T Consensus       127 ~~e~~aA~~IQra~R~~~~r~~~~  150 (168)
T 4dck_A          127 KHEEVSAMVIQRAFRRHLLQRSLK  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Confidence            568899999999999999988773

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=82.27  E-value=1.5  Score=38.97  Aligned_cols=23  Identities=9%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Q 037367          149 KGLVRLQALVRGHNVRKQAQMTM  171 (405)
Q Consensus       149 k~iVrLQAlvRG~lvRrq~~~tL  171 (405)
                      .++|+||+.+|||++|+++...+
T Consensus        46 ~~~i~iQktvR~~L~rkkhkPRi   68 (148)
T 3gn4_A           46 EACIKMQKTIRMWLCKRRHKPRI   68 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH
Confidence            67899999999999999985433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	7e-07
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	7e-07
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	2e-04
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	0.001

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRALK----GLVRLQALVRGHNVRKQAQ 168
           R  +  +  ++ Q++ RGYL R+A + L+    GL  +Q  +R   V +  Q
Sbjct: 726 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 777

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRAL----KGLVRLQALVRGHNVRKQAQMTMRCMQA 176
           R  K     T  Q+  RG+L R   RA+    + +  +Q  VR     K        M+ 
Sbjct: 730 RDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPW----MKL 785

Query: 177 LVRVQARVR 185
             +++  ++
Sbjct: 786 FFKIKPLLK 794

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 119 YGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVR 159
           Y    +   +   IQ   R ++  +    +K   +++ L++
Sbjct: 754 YRAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 121 RHSKEERAATLIQSYYRGYLARRALRALK 149
           R  K   A   IQ   RG+L R+    ++
Sbjct: 701 RADKLRAACIRIQKTIRGWLMRKKYMRMR 729

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.46
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.33
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.42
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	95.74
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	88.59

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.46  E-value=6.1e-05  Score=79.80  Aligned_cols=44  Identities=25%  Similarity=0.197  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHH-H---HHHHHHHHHHHHhhHHHHHHH
Q 037367          124 KEERAATLIQSYYRGYLARRAL-R---ALKGLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       124 ree~AAI~IQsafRGyLaRr~y-r---~lk~iVrLQAlvRG~lvRrq~  167 (405)
                      ....+|+.||++||||++|+.| +   .+.+++.||+.+||+++||.+
T Consensus       733 ~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         733 KLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3457899999999999999999 3   256899999999999999877

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.33  E-value=0.00014  Score=76.91  Aligned_cols=44  Identities=27%  Similarity=0.405  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHH-HHHH---HHHHHHHHHhhHHHHHHH
Q 037367          124 KEERAATLIQSYYRGYLARRAL-RALK---GLVRLQALVRGHNVRKQA  167 (405)
Q Consensus       124 ree~AAI~IQsafRGyLaRr~y-r~lk---~iVrLQAlvRG~lvRrq~  167 (405)
                      ....+|+.||++||||++|+.| +.+.   +++.||+.+||+++||.+
T Consensus       729 ~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         729 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3467899999999999999999 3332   788999999999999877

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.42  E-value=0.0028  Score=66.83  Aligned_cols=47  Identities=17%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          146 RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA  192 (405)
Q Consensus       146 r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s  192 (405)
                      ...+.++.||++|||+++|+++...+....|++.||+.+|+++.|+.
T Consensus       733 ~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~  779 (794)
T d2mysa2         733 KLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH  779 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34567889999999999999996555667899999999999998763

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.74  E-value=0.0099  Score=62.46  Aligned_cols=47  Identities=21%  Similarity=0.126  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367          147 ALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAH  193 (405)
Q Consensus       147 ~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~  193 (405)
                      ..+.++.||++|||+++|++|........+++.||+.+|++++|+..
T Consensus       730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            45678899999999999999943333455888999999999988643

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=88.59  E-value=0.12  Score=53.29  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH
Q 037367          125 EERAATLIQSYYRGYLARRAL  145 (405)
Q Consensus       125 ee~AAI~IQsafRGyLaRr~y  145 (405)
                      ...+||.||++||||++||+|
T Consensus       705 l~~~~~~iQ~~~R~~l~Rk~~  725 (730)
T d1w7ja2         705 LRAACIRIQKTIRGWLMRKKY  725 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777