Citrus Sinensis ID: 037377

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL
ccHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccccccccccccEEEEEEEEEEEEccEEEccccEEEEccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEEEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEccccEEEEccccEEEEEEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEcccccEEEEEEEEEEEEcEEcccccc
cHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEcccccHHHcccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccEEEEEcccccEcccccccccc
MAIKLIIFLLFVIIFIKSsnaanynvitygakpdgrtdstkpFLKAWASACRSAkastiyvpkgrylikaaefrgpcrnrvtlqidgtivaptnywalgnSGYWILFIKIDrlsviggtfdgkgaGFWACrksgkncpagassitfnWANNILISgltsinsqqTHLVINScnnvnvrnvkvvapdqspntdgihvqastgvtitgvtlktgddcisigpgtrnlfmnnikcgpghgvsigslgkdfnedgvQNITLLNAVftgsdngvrikswarpsnsfVRNVLFQNLImnnvqnpiivdqnycpnnqgcprqssgvkisqvtyrnikgtsktpeavtfdcsptnpcrgirlhdIKLTymnraatssckniggttfgvvmpkscl
MAIKLIIFLLFVIIFIKSSNAANYNVITygakpdgrtdsTKPFLKAWASACRsakastiyvpkgryLIKAaefrgpcrnrvtLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVapdqspntdgihvqastgvTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIkgtsktpeavtfdcsptnpcRGIRLHDIKLTYMNRAATssckniggttfgvvmpkscl
MAikliifllfviifikSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLvinscnnvnvrnvkvvAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL
**IKLIIFLLFVIIFIKSSNAANYNVITYGAKPDG***STKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPD***NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCP****GVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVM*****
*AIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL
MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL
MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 1.0 0.984 0.534 1e-123
O22818405 Probable polygalacturonas no no 0.943 0.901 0.512 1e-105
Q39766407 Polygalacturonase OS=Goss N/A no 0.976 0.928 0.406 5e-82
Q39786407 Polygalacturonase OS=Goss N/A no 0.976 0.928 0.406 8e-82
P35336467 Polygalacturonase OS=Acti N/A no 0.922 0.764 0.430 2e-77
O23147431 Polygalacturonase ADPG1 O no no 0.925 0.830 0.412 1e-76
Q94AJ5444 Probable polygalacturonas no no 0.935 0.815 0.411 4e-76
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.930 0.954 0.420 5e-76
P24548362 Exopolygalacturonase (Fra N/A no 0.899 0.961 0.422 7e-76
Q05967396 Polygalacturonase OS=Nico N/A no 0.987 0.964 0.385 2e-75
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/393 (53%), Positives = 280/393 (71%), Gaps = 6/393 (1%)

Query: 1   MAIKLIIFLL-FVIIFIKSSNAAN---YNVITYGAKPDGRTDSTKPFLKAWASACRSAKA 56
           MA +  +F L  + +F+ +S  A+   YNV + GAK DG+TDSTK FL AWA AC S   
Sbjct: 1   MANRRSLFSLSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNP 60

Query: 57  STIYVPKGRYLIKAAEFRGPCRNR-VTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115
             IYVP G + ++   F GPC+N  +T +I GT+VAP++Y  +GN+  WI F  ++ +++
Sbjct: 61  GVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTI 120

Query: 116 IGGTFDGKGAGFWACRK-SGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNN 174
            GG  DG+G   WAC+   G++CP+GA+++ F+ +NNI++SGL S+NSQ  H+VIN   N
Sbjct: 121 SGGILDGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQN 180

Query: 175 VNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGP 234
           V ++ V+V     SPNTDGIHVQ S+GVTI    + TGDDC+SIGPGT NL++  + CGP
Sbjct: 181 VQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGP 240

Query: 235 GHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNN 294
           GHG+SIGSLGK+  E GVQN+T+    F+G+ NG+RIKSW RPS  F RN+LFQ+  M N
Sbjct: 241 GHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVN 300

Query: 295 VQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRL 354
           V+NPI++DQ+YCP+N+GCP Q SGV+IS VTY +I GTS T  AV FDCSP +PCR I+L
Sbjct: 301 VENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKL 360

Query: 355 HDIKLTYMNRAATSSCKNIGGTTFGVVMPKSCL 387
            D+KLTY N+AA SSC +  GTT GVV P SCL
Sbjct: 361 EDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
224117798390 predicted protein [Populus trichocarpa] 1.0 0.992 0.775 0.0
224092830390 predicted protein [Populus trichocarpa] 1.0 0.992 0.731 1e-175
255576412387 Polygalacturonase precursor, putative [R 1.0 1.0 0.767 1e-173
255576410388 Polygalacturonase precursor, putative [R 1.0 0.997 0.726 1e-172
255576408388 Polygalacturonase precursor, putative [R 0.976 0.974 0.772 1e-171
224117794390 predicted protein [Populus trichocarpa] 1.0 0.992 0.757 1e-171
15224383392 putative polygalacturonase /pectinase [A 0.994 0.982 0.716 1e-167
449452150392 PREDICTED: polygalacturonase-like [Cucum 0.979 0.966 0.709 1e-165
297824383387 hypothetical protein ARALYDRAFT_903793 [ 0.984 0.984 0.706 1e-164
147783619389 hypothetical protein VITISV_035657 [Viti 0.984 0.979 0.720 1e-164
>gi|224117798|ref|XP_002331634.1| predicted protein [Populus trichocarpa] gi|222874030|gb|EEF11161.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/387 (77%), Positives = 345/387 (89%)

Query: 1   MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIY 60
             +  ++  LF      ++ +A+YNVI +GAKPDG+TDST+PFLKAW++AC SA  STI 
Sbjct: 4   FVVSYVVLFLFCTFQQSNAASASYNVIKFGAKPDGKTDSTQPFLKAWSAACGSASPSTIN 63

Query: 61  VPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTF 120
           VPKGRYL+KA  FRGPC+N++T+QIDGT+VAPT+Y ALGNSGYWILFIK++R+SV GGT 
Sbjct: 64  VPKGRYLLKATVFRGPCKNKITVQIDGTLVAPTDYRALGNSGYWILFIKVNRVSVFGGTL 123

Query: 121 DGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNV 180
           D KGAGFWACRKSG+NCP GA SITFNWAN+ILISGLTSINSQ  HLVINSCNNV VRNV
Sbjct: 124 DAKGAGFWACRKSGQNCPVGARSITFNWANDILISGLTSINSQSMHLVINSCNNVLVRNV 183

Query: 181 KVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSI 240
           +V+APDQSPNTDGIHVQ STGVTITG TL+TGDDCISIGP TRN+ M++IKCGPGHG+SI
Sbjct: 184 RVIAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCISIGPSTRNMLMSSIKCGPGHGISI 243

Query: 241 GSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPII 300
           GSLGKDFNE GV+NITL N++F+GSDNGVRIKSWARPSN FVRNV+FQNLIM NV+NPII
Sbjct: 244 GSLGKDFNEGGVENITLTNSIFSGSDNGVRIKSWARPSNGFVRNVVFQNLIMKNVRNPII 303

Query: 301 VDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLT 360
           VDQNYCPNNQGCPRQSSGVKISQVTYRNI+GTS +PEAVTFDCS +NPCRGI+L DIKLT
Sbjct: 304 VDQNYCPNNQGCPRQSSGVKISQVTYRNIQGTSASPEAVTFDCSSSNPCRGIKLQDIKLT 363

Query: 361 YMNRAATSSCKNIGGTTFGVVMPKSCL 387
           YMN AATSSCKNIGGT+ GV+MP+SC+
Sbjct: 364 YMNTAATSSCKNIGGTSSGVLMPESCI 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092830|ref|XP_002309713.1| predicted protein [Populus trichocarpa] gi|222852616|gb|EEE90163.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576412|ref|XP_002529098.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531449|gb|EEF33282.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255576410|ref|XP_002529097.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531448|gb|EEF33281.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255576408|ref|XP_002529096.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531447|gb|EEF33280.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224117794|ref|XP_002331633.1| predicted protein [Populus trichocarpa] gi|222874029|gb|EEF11160.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15224383|ref|NP_181917.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] gi|3212847|gb|AAC23398.1| putative polygalacturonase [Arabidopsis thaliana] gi|67633606|gb|AAY78727.1| putative polygalacturonase/pectinase [Arabidopsis thaliana] gi|330255247|gb|AEC10341.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449452150|ref|XP_004143823.1| PREDICTED: polygalacturonase-like [Cucumis sativus] gi|449525056|ref|XP_004169536.1| PREDICTED: polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297824383|ref|XP_002880074.1| hypothetical protein ARALYDRAFT_903793 [Arabidopsis lyrata subsp. lyrata] gi|297325913|gb|EFH56333.1| hypothetical protein ARALYDRAFT_903793 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147783619|emb|CAN68140.1| hypothetical protein VITISV_035657 [Vitis vinifera] gi|296084360|emb|CBI24748.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.956 0.943 0.697 2.4e-147
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.956 0.939 0.584 1.6e-125
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.953 0.936 0.596 8e-124
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.953 0.936 0.589 8e-124
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.956 0.953 0.551 1.7e-114
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.950 0.958 0.532 6.8e-111
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.937 0.914 0.486 2.5e-97
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.935 0.893 0.491 2.3e-94
TAIR|locus:2046555 664 AT2G33160 [Arabidopsis thalian 0.930 0.542 0.414 3.1e-74
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.930 0.954 0.412 6.5e-74
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
 Identities = 258/370 (69%), Positives = 308/370 (83%)

Query:    18 SSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPC 77
             S+ A+NYNV+++GAKPDGRTDSTK FL AW +ACRSA A T+ VP+G +L+K  EFRGPC
Sbjct:    23 STAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLKPVEFRGPC 82

Query:    78 RNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNC 137
             R+R+T QI GTIVAP++Y  LGNSGYWILF+K++R+S+IGGT D +GA FWACRKSGK+C
Sbjct:    83 RSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFWACRKSGKSC 142

Query:   138 PAGASSITFNWANNILISGLTSINSQQTHLXXXXXXXXXXXXXXXXAPDQSPNTDGIHVQ 197
             P GA S+TFNWAN++++SGLTSINSQ THL                APDQSPNTDG+HVQ
Sbjct:   143 PVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQ 202

Query:   198 ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITL 257
              S GVT+T  T  TGDDCISIGPGTRNL+M+ + CGPGHG+SIGSLG+D NE GV+NITL
Sbjct:   203 GSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRDANEAGVENITL 262

Query:   258 LNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSS 317
             +N+VF+GSDNGVRIK+WAR S  FVRNVLFQNLIM NVQNPIIVDQNYCP+NQGCP+Q S
Sbjct:   263 INSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPSNQGCPKQGS 322

Query:   318 GVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTT 377
             GVKISQV YRNI+GTS+T +A+TFDCS +NPC+ IRLHDIKLT+  R+ATS+CKNI G  
Sbjct:   323 GVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLTFNGRSATSTCKNIKGVK 382

Query:   378 FGVVMPKSCL 387
              GVVMP+ CL
Sbjct:   383 AGVVMPQGCL 392
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046555 AT2G33160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.53431.00.9847N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01700083
hypothetical protein (390 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-175
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-112
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-101
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-94
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 6e-92
PLN03010409 PLN03010, PLN03010, polygalacturonase 5e-83
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-80
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-19
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 6e-07
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  492 bits (1267), Expect = e-175
 Identities = 231/383 (60%), Positives = 294/383 (76%), Gaps = 1/383 (0%)

Query: 6   IIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGR 65
           ++F L   I + SS +  +NV+++GAKPDG TDST  FLKAW  AC SA ++T+ VP G 
Sbjct: 10  LLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGT 69

Query: 66  YLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGA 125
           +L+K   F GPC++++T Q+ GT+VAP +Y   GNSGYWILF K++R S++GGTFD +  
Sbjct: 70  FLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARAN 129

Query: 126 GFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAP 185
           GFW+CRKSG+NCP G  SI+FN A +++ISG+ S+NSQ +H+ +N C NV VRNVK+VAP
Sbjct: 130 GFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAP 189

Query: 186 DQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGK 245
             SPNTDG HVQ STGVT TG T++TGDDC++IGPGTRN  +  + CGPGHGVSIGSL K
Sbjct: 190 GNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAK 249

Query: 246 DFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNY 305
           + NEDGV+N+T+ ++VFTGS NGVRIKSWARPS  FVRNV FQ+L+M NV+NPII+DQNY
Sbjct: 250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNY 309

Query: 306 CPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTY-MNR 364
           CP ++GCP + SGVKISQVTY+NI+GTS T EA+   CS ++PC GI L DIKLTY    
Sbjct: 310 CPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT 369

Query: 365 AATSSCKNIGGTTFGVVMPKSCL 387
            ATS C N  G + GV+ P SCL
Sbjct: 370 PATSFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010409 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.89
PLN02218431 polygalacturonase ADPG 99.86
PLN03003456 Probable polygalacturonase At3g15720 99.85
PLN03010409 polygalacturonase 99.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.85
PLN02155394 polygalacturonase 99.85
PLN02793443 Probable polygalacturonase 99.84
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.83
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.81
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.73
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.42
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.04
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.88
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.69
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.68
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.62
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.62
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.6
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.56
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.44
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.41
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.37
smart00656190 Amb_all Amb_all domain. 98.35
PLN02480343 Probable pectinesterase 98.33
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.31
PLN02497331 probable pectinesterase 98.3
PLN02634359 probable pectinesterase 98.22
PLN02176340 putative pectinesterase 98.16
PLN02773317 pectinesterase 98.16
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.1
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.07
PRK10531422 acyl-CoA thioesterase; Provisional 98.07
PLN02682369 pectinesterase family protein 97.95
PLN02665366 pectinesterase family protein 97.92
smart00656190 Amb_all Amb_all domain. 97.91
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.91
PLN02304379 probable pectinesterase 97.86
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.85
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.82
PLN02671359 pectinesterase 97.76
PLN02197588 pectinesterase 97.71
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.7
PLN02432293 putative pectinesterase 97.68
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.65
PLN02916502 pectinesterase family protein 97.63
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.62
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.62
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.57
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.57
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.57
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.55
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.55
PLN02301548 pectinesterase/pectinesterase inhibitor 97.55
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.51
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.49
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.47
PLN02314586 pectinesterase 97.47
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.44
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.42
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.4
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.4
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.36
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.3
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.95
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.95
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 96.41
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.39
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 96.13
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.85
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.73
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.35
PLN02480343 Probable pectinesterase 91.26
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 90.85
PLN02665366 pectinesterase family protein 90.39
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.13
PLN02916502 pectinesterase family protein 89.64
PLN02682369 pectinesterase family protein 88.91
PLN02432293 putative pectinesterase 88.57
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.39
PLN02468565 putative pectinesterase/pectinesterase inhibitor 88.38
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 88.31
PLN02488509 probable pectinesterase/pectinesterase inhibitor 87.97
PLN02301548 pectinesterase/pectinesterase inhibitor 87.85
PLN02201520 probable pectinesterase/pectinesterase inhibitor 87.82
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 87.76
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 87.68
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 87.34
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.27
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.11
PLN02176340 putative pectinesterase 86.77
PLN02313587 Pectinesterase/pectinesterase inhibitor 86.77
PLN02497331 probable pectinesterase 86.75
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 86.61
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 86.34
PLN02314586 pectinesterase 86.32
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 86.08
PLN02671359 pectinesterase 85.78
PLN02197588 pectinesterase 85.76
PLN02484587 probable pectinesterase/pectinesterase inhibitor 85.3
PLN02304379 probable pectinesterase 84.81
PRK10531422 acyl-CoA thioesterase; Provisional 83.48
PLN02634359 probable pectinesterase 83.41
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 83.01
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 82.37
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1e-83  Score=623.27  Aligned_cols=382  Identities=60%  Similarity=1.110  Sum_probs=349.3

Q ss_pred             hHHHHHHHhhhccCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEE
Q 037377            6 IIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQI   85 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~   85 (387)
                      +++.||.++..+..+++++||+||||+|||++|||+|||+||++||++.+|++|+||+|+|++++|.|.|||||+++|+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l   89 (394)
T PLN02155         10 LLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKITFQV   89 (394)
T ss_pred             HHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCCCceEEE
Confidence            44444445555666789999999999999999999999999976799889999999999999999999999999999999


Q ss_pred             eeEEEecCCccccCCCceEEEEEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccc
Q 037377           86 DGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQT  165 (387)
Q Consensus        86 ~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~  165 (387)
                      +|+|+++.|+..|.....|+.+.+.+|+.|+||+|||+|+.||..+..+...+.+|+++.|.+|+|++|++++++|||.|
T Consensus        90 ~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w  169 (394)
T PLN02155         90 AGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVS  169 (394)
T ss_pred             eeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCe
Confidence            99999999998887666799999999999999999999999998765444556688999999999999999999999999


Q ss_pred             eeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCC
Q 037377          166 HLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGK  245 (387)
Q Consensus       166 ~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~  245 (387)
                      ++++.+|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||.|..+||++|||+|+
T Consensus       170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~  249 (394)
T PLN02155        170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAK  249 (394)
T ss_pred             EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccc
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEE
Q 037377          246 DFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVT  325 (387)
Q Consensus       246 ~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt  325 (387)
                      +...+.++||+|+||+|.++.+|++||+|.+.++|.|+||+|+|++|+++++||.|++.|++....++...+.+.|+||+
T Consensus       250 ~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It  329 (394)
T PLN02155        250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVT  329 (394)
T ss_pred             cCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEE
Confidence            76678899999999999999999999998755789999999999999999999999999986544555455678999999


Q ss_pred             EEeEEEecCCCceEEEEcCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 037377          326 YRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATSSCKNIGGTTFGVVMPKSCL  387 (387)
Q Consensus       326 ~~nI~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~  387 (387)
                      |+||+++.....++++.|.+..||+||+|+||+++..+ .++.+.|+|+++...++++|++||
T Consensus       330 ~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        330 YKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             EEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence            99999998767789999999999999999999999876 446899999999999999999997

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-15
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 5e-15
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-14
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 4e-14
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 4e-13
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 4e-13
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-11
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 6e-09
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-04
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249
           NTDG  +  STGV I+G T+K  DDCI+I  G    F     C  GHG+SIGS+G   ++
Sbjct: 152 NTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGG-TCSGGHGLSIGSVGG-RDD 209
Query: 250 DGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQN-PIIVDQNYCPN 308
           + V+N+T+ ++  + S NGVRIK+  + +   V  + + N+ ++ + +  I+++Q+Y  N
Sbjct: 210 NTVKNVTISDSTVSNSANGVRIKTIYKETGD-VSEITYSNIQLSGITDYGIVIEQDY-EN 267
Query: 309 NQGCPRQSSGVKISQVTYRNIKGT 332
                  S+G+ I+ VT   + GT
Sbjct: 268 GSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-118
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-113
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-103
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-99
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 8e-98
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 7e-96
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 5e-94
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 3e-93
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 3e-91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 6e-83
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-34
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-33
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 9e-28
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 5e-24
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-13
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-13
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 5e-12
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 7e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  348 bits (895), Expect = e-118
 Identities = 82/379 (21%), Positives = 144/379 (37%), Gaps = 35/379 (9%)

Query: 18  SSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAA-EFRGP 76
                  N+++YGA  D  TD       AWA AC+S     +Y+P G Y +       G 
Sbjct: 15  KGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLTGG 71

Query: 77  CRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG----GTFDGKGAGFWACRK 132
                 +Q+DG I            G  I         +      G   G G  +     
Sbjct: 72  SA--TAIQLDGIIYRTGTAS-----GNMIAVTDTTDFELFSSTSKGAVQGFGYVYH---- 120

Query: 133 SGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTD 192
                  GA  +      +  +  +  +++   H  +++C++  V N+ +   +     D
Sbjct: 121 --AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLD 177

Query: 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGV 252
           GI V   + + +  V +   D+C+++     N+ + +I C    G ++GSLG D     V
Sbjct: 178 GIDVW-GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDV 233

Query: 253 QNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGC 312
            +I   N     S+    IKS     +  V NVL +N I +     + +D  +       
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA 291

Query: 313 PRQSSGVKISQVTYRNIKGTS---KTPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATS 368
                GV+++ +T +N KGT     T   +   CS T PC  + L DI +   +  +   
Sbjct: 292 G---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELY 348

Query: 369 SCKNIGGTTFGVVMPKSCL 387
            C++  G+ + +    S  
Sbjct: 349 LCRSAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.89
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.88
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.88
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.85
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.77
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.76
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.62
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.52
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.48
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.47
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.39
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.32
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.3
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.28
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.2
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.87
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.72
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.62
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.61
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.57
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.57
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.57
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.56
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.56
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.53
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.45
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.44
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.43
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.38
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.37
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.34
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.26
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.17
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.16
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.11
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.04
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.98
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.94
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.66
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.66
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.43
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.33
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.31
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.19
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.96
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.82
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.63
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.56
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 96.37
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.07
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.94
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.57
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.45
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 94.71
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.52
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 92.39
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 87.85
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 85.68
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 84.31
3riq_A543 Tailspike protein; right handed beta-helix, endorh 83.36
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 83.08
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 82.64
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=6.9e-68  Score=524.73  Aligned_cols=333  Identities=23%  Similarity=0.379  Sum_probs=298.2

Q ss_pred             HhhhccCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEec
Q 037377           13 IIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAP   92 (387)
Q Consensus        13 ~~~~~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~   92 (387)
                      -+..+.+++++++|+||||+|||++|||+|||+||++ |++.+|++|+||+|+|++++|.|    ||+++|+++|+|+++
T Consensus        17 ~~~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l----~s~v~l~l~gtL~~s   91 (448)
T 3jur_A           17 HVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHL----KSNIELHVKGTIKFI   91 (448)
T ss_dssp             HCCCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEEC----CTTEEEEESSEEEEC
T ss_pred             hccCCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEe----CCCcEEEEEEEEEec
Confidence            3455567889999999999999999999999999985 77778899999999999999998    699999999999999


Q ss_pred             CCcccc-CC------------CceEEEEEeeeEEEEEc-eEEeCCC--CceecccCC-----------------------
Q 037377           93 TNYWAL-GN------------SGYWILFIKIDRLSVIG-GTFDGKG--AGFWACRKS-----------------------  133 (387)
Q Consensus        93 ~~~~~~-~~------------~~~~i~~~~~~ni~I~G-G~idg~g--~~~~~~~~~-----------------------  133 (387)
                      .++.+| +.            ..+||.+.+++||+|+| |+|||+|  +.||+....                       
T Consensus        92 ~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~  171 (448)
T 3jur_A           92 PDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA  171 (448)
T ss_dssp             CCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHH
T ss_pred             CCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhh
Confidence            999888 31            14689999999999999 9999999  899974321                       


Q ss_pred             -----------CCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccE
Q 037377          134 -----------GKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGV  202 (387)
Q Consensus       134 -----------~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv  202 (387)
                                 +.....||++|.|.+|+|++|+|++++|+|.|++++..|+|++|++++|.++  ++|+||||+.+|+||
T Consensus       172 ~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV  249 (448)
T 3jur_A          172 ERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM  249 (448)
T ss_dssp             HHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEE
T ss_pred             cccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCE
Confidence                       0123579999999999999999999999999999999999999999999987  689999999999999


Q ss_pred             EEEceEEecCCceEEeCCC-----------ceeEEEEeeEE--eCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCCCce
Q 037377          203 TITGVTLKTGDDCISIGPG-----------TRNLFMNNIKC--GPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNG  268 (387)
Q Consensus       203 ~I~n~~i~~gdD~i~~~~~-----------s~ni~i~n~~~--~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~g  268 (387)
                      +|+||+|.++||||++|++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||+|.++.+|
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~G  325 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERA  325 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccce
Confidence            9999999999999999997           89999999999  5567 7999998    467899999999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEeEEEecCCccE-EEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcCCCC
Q 037377          269 VRIKSWARPSNSFVRNVLFQNLIMNNVQNPI-IVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTN  347 (387)
Q Consensus       269 i~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i-~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~~~~  347 (387)
                      ++||++++ ++|.|+||+|+|++|+++.+++ .|++.|+..   +  +...+.|+||+|+||+++. ...++.+.|.++.
T Consensus       326 irIKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~---~--~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~  398 (448)
T 3jur_A          326 LRLKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE---E--GEYLPVVRSVFVKNLKATG-GKYAVRIEGLEND  398 (448)
T ss_dssp             EEEECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC---C--CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTB
T ss_pred             EEEEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC---C--CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCC
Confidence            99999865 6799999999999999999988 999999753   1  2345789999999999998 5679999999999


Q ss_pred             ceecEEEEeEEEEecC
Q 037377          348 PCRGIRLHDIKLTYMN  363 (387)
Q Consensus       348 ~i~~i~~~ni~i~~~~  363 (387)
                      ||+||+|+||++++..
T Consensus       399 p~~~I~~~nv~i~~~~  414 (448)
T 3jur_A          399 YVKDILISDTIIEGAK  414 (448)
T ss_dssp             CEEEEEEEEEEEESCS
T ss_pred             CEeeEEEEEEEEEccc
Confidence            9999999999999764
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-82
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-78
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-74
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-67
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-63
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-62
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-62
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-54
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 7e-04
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 8e-04
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  255 bits (653), Expect = 2e-82
 Identities = 87/376 (23%), Positives = 147/376 (39%), Gaps = 29/376 (7%)

Query: 18  SSNAAN--YNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAA-EFR 74
           S+  A    N+++YGA  D  TD       AWA AC+S     +Y+P G Y +       
Sbjct: 13  STKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLT 69

Query: 75  GPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSG 134
           G       +Q+DG I           SG  I         +   T  G   GF       
Sbjct: 70  GGSA--TAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYH-- 120

Query: 135 KNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGI 194
                GA  +      +  +  +  +++   H  +++C++  V N+ +         DGI
Sbjct: 121 AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGI 179

Query: 195 HVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQN 254
            V  S  + +  V +   D+C+++     N+ + +I C    G ++GSLG D     V +
Sbjct: 180 DVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTD 235

Query: 255 ITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPR 314
           I   N     S+    IKS     +  V NVL +N I +     + +D  +         
Sbjct: 236 IVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG- 292

Query: 315 QSSGVKISQVTYRNIKGTS---KTPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATSSC 370
              GV+++ +T +N KGT     T   +   CS T PC  + L DI +   +  +    C
Sbjct: 293 --DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLC 350

Query: 371 KNIGGTTFGVVMPKSC 386
           ++  G+ + +    S 
Sbjct: 351 RSAYGSGYCLKDSSSH 366
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.85
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.84
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.84
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.83
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.79
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.75
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.64
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.58
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.71
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.49
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.38
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.38
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.02
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.81
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.74
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.74
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.71
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.69
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.51
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.46
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.43
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.87
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 96.54
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.44
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.02
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.52
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.88
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 90.96
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 89.46
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 83.49
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=6.4e-63  Score=485.07  Aligned_cols=335  Identities=24%  Similarity=0.412  Sum_probs=290.0

Q ss_pred             CCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEE-EEeeCCCCCcEEEEEeeEEEecCCcccc
Q 037377           20 NAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKA-AEFRGPCRNRVTLQIDGTIVAPTNYWAL   98 (387)
Q Consensus        20 ~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~-l~l~~~~ks~v~l~~~G~l~~~~~~~~~   98 (387)
                      +.++|||+||||+|||++|||+|||+||+ ||+  +|++|+||+|+|++.+ +.|.++  +++.|+++|+|+++.+...+
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~~~~   91 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTASGN   91 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCCSSE
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCCccC
Confidence            35899999999999999999999999997 586  4779999999998765 999886  78999999999886654432


Q ss_pred             CCCceEEEEEeeeEEEEEc-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEE
Q 037377           99 GNSGYWILFIKIDRLSVIG-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNV  177 (387)
Q Consensus        99 ~~~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i  177 (387)
                      .  ..+....+.+.+.+.| |+|||+|+.||..      ...+|+++.|.+|+|++|++++++|++.|++++..|++++|
T Consensus        92 ~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~------~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i  163 (422)
T d1rmga_          92 M--IAVTDTTDFELFSSTSKGAVQGFGYVYHAE------GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEV  163 (422)
T ss_dssp             E--EEEEEEEEEEEECSSSCCEEECCTHHHHTT------TCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEE
T ss_pred             E--EEeccCccEEEEEeecceEEecCcceecCC------CCCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEE
Confidence            1  1223334445566677 9999999999953      35678999999999999999999999999999999999999


Q ss_pred             EeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEEE
Q 037377          178 RNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITL  257 (387)
Q Consensus       178 ~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i  257 (387)
                      +|++|.++. .+|+||||+.+ +||+|+||++.++||||+++++++||+|+|++|..+||++|||+|.   ...++||+|
T Consensus       164 ~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV~v  238 (422)
T d1rmga_         164 YNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVY  238 (422)
T ss_dssp             EEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEEEE
T ss_pred             EeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEEEE
Confidence            999999864 68999999976 5899999999999999999999999999999999999999999864   456999999


Q ss_pred             EeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecC---
Q 037377          258 LNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSK---  334 (387)
Q Consensus       258 ~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~---  334 (387)
                      +||++.++..|++||++.  +.|.|+||+|+|++|+++++||.|++.|++....   ......|+||+|+||+++..   
T Consensus       239 ~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT~~~~~  313 (422)
T d1rmga_         239 RNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGTEANGA  313 (422)
T ss_dssp             EEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEEESCTT
T ss_pred             EeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEEecCCc
Confidence            999999999999999873  5689999999999999999999999999753322   22457899999999999864   


Q ss_pred             CCceEEEEcCCCCceecEEEEeEEEEecC-Cccceeeecccccc
Q 037377          335 TPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATSSCKNIGGTT  377 (387)
Q Consensus       335 ~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~~~~~~  377 (387)
                      ...++++.|++..||+||+|+||+|+.++ +.+.+.|+|++|+.
T Consensus       314 ~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~  357 (422)
T d1rmga_         314 TRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSG  357 (422)
T ss_dssp             TSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEES
T ss_pred             ccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeE
Confidence            35689999999999999999999999876 56668999999865
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure