Citrus Sinensis ID: 037386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEccccccccccccEEEEEEcccEEEEEEEcccccccccccccccccccccccccccHHHHHHHcccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccccccccHHcccccccccEEccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEcccEEEEEEEEccccccccccccccccccccccccccHHHHHHHcccccccEEEEEEccc
Coil and Loop (DISEMBL)
MKKQVCASNIILVIVSIVFLVTYgsveagtckpsgkirgkkpppgqcnkennsdcckegklytiyrcsppvtghtkatltinsfekngegggpsecdnkyhsdddpvvalstgwynkgsrclnyiniygngksvkakvvdecdstvgcdsvhdyqppcpnnivdgSKAVWKAlgvptsrgeldihwsda
Flexible Loop (DISEMBL)
MKKQVCASNIILVIVSIVFLVTYGSVeagtckpsgkirgkkpppgqcnkennsdcckeGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALgvptsrgeldihwsda
Low Complexity Region (SEG)
MKKQVCASNiilvivsivflvTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA
Disordered region (IsUnstruct)
****VCASNIILVIVSIVFLVTYGSVEAGTC***********************CCKEGKLYTIYRCSPPVTGHTKATLTIN***********************PVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR**L*******
Disordered Region (DISOPRED)
*********IILVIVSIVFLVTYGSVEA***************************CKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA
Disordered Region (DISEMBL)
MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSG***************NNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA
Disordered Region (DISPRO)
**KQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q6H5X0	192	Putative ripening-related	yes	no	0.904	0.890	0.518	1e-43
Q9M4H4	220	Ripening-related protein	no	no	0.708	0.609	0.629	4e-41
Q7XVA8	183	Putative ripening-related	no	no	0.915	0.945	0.530	1e-39
P84527	189	Kiwellin OS=Actinidia del	N/A	no	0.793	0.793	0.532	2e-38
Q9FWU1	216	Putative ripening-related	no	no	0.820	0.717	0.521	3e-38
Q9FWT5	213	Ripening-related protein	no	no	0.888	0.788	0.491	3e-37
Q8LN49	276	Putative ripening-related	no	no	0.846	0.579	0.472	1e-36
Q7XD65	162	Putative ripening-related	no	no	0.539	0.629	0.442	8e-21
Q7XD66	167	Putative ripening-related	no	no	0.619	0.700	0.484	1e-20

>sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 111/185 (60%), Gaps = 14/185 (7%)

Query: 12  LVIVSIVFL------VTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIY 65
           LV+VS+  L         G   AG C PSG +R  +    Q       DCCK G+ Y  Y
Sbjct: 15  LVLVSLPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQ-------DCCKAGRSYPTY 67

Query: 66  RCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYI 125
            CSP  TG TKA +T+N FE  G+GG PSECD K+H + + VVALSTGWY  G RC   I
Sbjct: 68  ACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKNI 127

Query: 126 NIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR-GELDI 184
            I  NG+SV AKVVDECDS  GCD  H YQPPC  N+VD S+AVW AL +     GE DI
Sbjct: 128 RINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDI 187

Query: 185 HWSDA 189
            WSDA
Sbjct: 188 TWSDA 192

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M4H4|GRI22_VITVI Ripening-related protein grip22 OS=Vitis vinifera GN=grip22 PE=2 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 96/135 (71%), Gaps = 1/135 (0%)

Query: 56  CKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWY 115
           CK GK    Y CSPP+T  T A LT N+FEK G+GGGPS CDNKYH + + +VALSTGWY
Sbjct: 86  CKGGKPKNTYTCSPPITSSTPAVLTNNNFEKGGDGGGPSACDNKYHDNSERIVALSTGWY 145

Query: 116 NKGSRCLNYINIYG-NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALG 174
           N GSRC   I I   NG+SV AKVVDECDS  GCD  H  QPPC NNIVDGS AVW ALG
Sbjct: 146 NGGSRCGKMIRITAQNGRSVLAKVVDECDSMHGCDKEHAGQPPCDNNIVDGSNAVWNALG 205

Query: 175 VPTSRGELDIHWSDA 189
           +  + GE+D+ WS A
Sbjct: 206 LDINIGEVDVTWSMA 220

Vitis vinifera (taxid: 29760)

>sp|Q7XVA8|RIP1_ORYSJ Putative ripening-related protein 1 OS=Oryza sativa subsp. japonica GN=Os04g0364800 PE=3 SV=2

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/183 (53%), Positives = 112/183 (61%), Gaps = 10/183 (5%)

Query: 10  IILVIVSIVFLVTYG-SVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCS 68
           + L I  +V +   G S   G C PSG IR       Q       DCCK G+ Y  Y CS
Sbjct: 8   LALAIAGVVLVSLPGLSRGDGECNPSGAIRSSTTHRCQ-------DCCKAGQSYPTYTCS 60

Query: 69  PPVTGH-TKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINI 127
           PP TG  T A +T+N F+  G+GGGPSECD  YHS+ + VVALSTGWY  GSRC   + I
Sbjct: 61  PPTTGSSTDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRI 120

Query: 128 YGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVP-TSRGELDIHW 186
             NG+SV AKVVDECDS  GCD  H YQPPC  N+VD S+AVW ALG+     GE DI W
Sbjct: 121 NANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITW 180

Query: 187 SDA 189
           SDA
Sbjct: 181 SDA 183

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P84527|KIWEL_ACTDE Kiwellin OS=Actinidia deliciosa PE=1 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 103/169 (60%), Gaps = 19/169 (11%)

Query: 22  TYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTI 81
           T  S + G CKPSG +  +                  GK Y  Y CSPPVT  T A LT 
Sbjct: 39  TTHSHQPGGCKPSGTLTCR------------------GKSYPTYDCSPPVTSSTPAKLTN 80

Query: 82  NSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG-NGKSVKAKVVD 140
           N F + G+ GGPSECD  YH++++ +VALSTGWYN GSRC   I I   NGKSV AKVVD
Sbjct: 81  NDFSEGGDDGGPSECDESYHNNNERIVALSTGWYNGGSRCGKMIRITASNGKSVSAKVVD 140

Query: 141 ECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA 189
           ECDS  GCD  H  QPPC NNIVDGS AVW ALG+  + G +DI WS A
Sbjct: 141 ECDSRHGCDKEHAGQPPCRNNIVDGSNAVWSALGLDKNVGVVDITWSMA 189

Kissper is an anion-selective pore-forming peptide.

Actinidia deliciosa (taxid: 3627)

>sp|Q9FWU1|RIP4_ORYSJ Putative ripening-related protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0490666 PE=3 SV=2

 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 110/163 (67%), Gaps = 8/163 (4%)

Query: 31  CKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGH--TKATLTINSFEKNG 88
           C  SG + GK    G+CN+ + SDCC  G+ Y  +RCSPPV+    T ATLT+NSF + G
Sbjct: 56  CHISGFLHGKA---GKCNRAHGSDCCVTGRRYPQFRCSPPVSSARPTPATLTLNSFARGG 112

Query: 89  EGGGPSECDNKYHSDDDPVVALSTGWY--NKGSRCLNYINIY-GNGKSVKAKVVDECDST 145
           +GGG S CD ++H D   VVALS+GW   +  SRC   I +  GNG+S  A+VVDECDS 
Sbjct: 113 DGGGRSSCDGRFHPDTAMVVALSSGWLRLDGASRCNRMIRVAAGNGRSALARVVDECDSV 172

Query: 146 VGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSD 188
            GCD+ H+++PPCPN++VDGS AVWKALG+    GE  + WSD
Sbjct: 173 NGCDAEHNFEPPCPNDVVDGSPAVWKALGLDEGVGEFKVTWSD 215

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FWT5|RIP3_ORYSJ Ripening-related protein 3 OS=Oryza sativa subsp. japonica GN=Os10g0490100 PE=2 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 108/175 (61%), Gaps = 7/175 (4%)

Query: 19  FLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGH---T 75
           F      +++ +C+PSG I G     G CN +N S+CC++G  Y  Y CSPPV      T
Sbjct: 42  FFPHRSLLQSSSCQPSGAITGTS---GDCNADNGSECCQDGVQYMTYACSPPVAAGGTGT 98

Query: 76  KATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNG-KSV 134
            A LT+NSF   G+GGG   C  +++ D   VVALSTGW++  SRC   + I  +G  SV
Sbjct: 99  AALLTLNSFADGGDGGGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASV 158

Query: 135 KAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSDA 189
            A VVDECDS  GCDS H+++PPC NNIVDGS AVW ALG+    GE  I WSDA
Sbjct: 159 TAMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA 213

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LN49|RIP5_ORYSJ Putative ripening-related protein 5 OS=Oryza sativa subsp. japonica GN=Os10g0490500 PE=3 SV=1

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 106/184 (57%), Gaps = 24/184 (13%)

Query: 7   ASNIILVIVSIVFLVT-YGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIY 65
           A   +L  +S   L +    V AG C+PSG + GK    G C K N+ DCC++GK Y  Y
Sbjct: 2   AMIFLLAALSTTHLASSLRPVAAGACRPSGYLPGKS---GNCEKSNDPDCCEDGKAYPQY 58

Query: 66  RCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYI 125
           R                 FEK  +GGGPSECDN YHSD + VVALSTGW+   +RC + +
Sbjct: 59  R-----------------FEKGKDGGGPSECDNAYHSDGELVVALSTGWFAGTARCGHRV 101

Query: 126 NIY---GNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGEL 182
            I    G G+SV AKVVDECDS  GCD  H+Y+ PC NNIVD S AVW ALG+  + G  
Sbjct: 102 RITASGGGGRSVVAKVVDECDSVHGCDGEHNYEAPCGNNIVDASPAVWDALGLDKNVGME 161

Query: 183 DIHW 186
            I W
Sbjct: 162 HITW 165

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XD65|RIP7_ORYSJ Putative ripening-related protein 7 OS=Oryza sativa subsp. japonica GN=Os10g0489400 PE=3 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 20/122 (16%)

Query: 77  ATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINI--------- 127
           A +T+N FEK  +GGGP+ CD  YHSD + +VALST W+  G RC   I I         
Sbjct: 50  AVMTVNGFEKGEDGGGPAACDGHYHSDGELIVALSTEWFAGGRRCHRRIRITPSEHGRRG 109

Query: 128 -YGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHW 186
             G  ++V+A VVDECDS  G          C +++VD S AVW+ALG+ T  GE+ + W
Sbjct: 110 GGGGRRAVEATVVDECDSRRG----------CKDDVVDSSPAVWRALGLDTDSGEVRVTW 159

Query: 187 SD 188
           SD
Sbjct: 160 SD 161

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XD66|RIP6_ORYSJ Putative ripening-related protein 6 OS=Oryza sativa subsp. japonica GN=Os10g0489301 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 78/130 (60%), Gaps = 13/130 (10%)

Query: 64  IYRCSPPVTGH--TKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRC 121
           + RCS P      T A +T+N FE+  +GGGP+ CD +YHSD   V ALSTGW+  G RC
Sbjct: 47  MRRCSSPAVSEDGTPAVMTVNGFEEGEDGGGPAACDGRYHSDRSLVAALSTGWFAGGRRC 106

Query: 122 LNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR 179
              I I    NG+SV A VVDECDS  G          C ++IVD S AVW ALG+ T+ 
Sbjct: 107 HRGIRITSRQNGRSVVATVVDECDSRHG---------GCKDDIVDTSAAVWSALGLDTNV 157

Query: 180 GELDIHWSDA 189
           GE+ + WSDA
Sbjct: 158 GEVPVTWSDA 167

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
224067882	188	predicted protein [Populus trichocarpa]	0.984	0.989	0.748	6e-76
255577889	187	Kiwellin, putative [Ricinus communis] gi	0.978	0.989	0.717	3e-75
255545110	187	Kiwellin, putative [Ricinus communis] gi	0.978	0.989	0.738	5e-75
224127059	188	predicted protein [Populus trichocarpa]	0.989	0.994	0.710	8e-74
224067880	188	predicted protein [Populus trichocarpa]	0.915	0.920	0.748	1e-72
255579859	187	Kiwellin, putative [Ricinus communis] gi	0.978	0.989	0.680	4e-70
255541550	187	Kiwellin, putative [Ricinus communis] gi	0.978	0.989	0.691	7e-70
147818444	188	hypothetical protein VITISV_009241 [Viti	0.941	0.946	0.698	1e-69
225454170	176	PREDICTED: putative ripening-related pro	0.925	0.994	0.704	2e-68
225454174	188	PREDICTED: putative ripening-related pro	0.941	0.946	0.698	5e-68

>gi|224067882|ref|XP_002302580.1| predicted protein [Populus trichocarpa] gi|222844306|gb|EEE81853.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 160/191 (83%), Gaps = 5/191 (2%)

Query: 1   MKKQVCASNIILVIVSIVFLVTYG-SVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEG 59
           MKKQVC+S      VS +FL T   S+EA TCKPSG IRG+KPPP QCN+EN+SDCC +G
Sbjct: 1   MKKQVCSS---AFFVSFLFLATLCLSIEAQTCKPSGNIRGRKPPPNQCNQENDSDCCADG 57

Query: 60  KLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGS 119
           KLY I++CSP VTG TKATLT+NSFEK G+GG PSECDN YHSDD PVVALSTGWYN G+
Sbjct: 58  KLYPIFKCSPGVTGRTKATLTLNSFEKGGDGGAPSECDNHYHSDDTPVVALSTGWYNHGN 117

Query: 120 RCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR 179
           RCLN+INI+GNGKSVKA VVDECDST+GCDS HDYQPPC NNIVD SKAVWKALGVP S 
Sbjct: 118 RCLNFINIHGNGKSVKAMVVDECDSTMGCDSDHDYQPPCANNIVDASKAVWKALGVPESD 177

Query: 180 -GELDIHWSDA 189
            G +DI+WSDA
Sbjct: 178 WGGMDIYWSDA 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577889|ref|XP_002529817.1| Kiwellin, putative [Ricinus communis] gi|223530694|gb|EEF32566.1| Kiwellin, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 161/191 (84%), Gaps = 6/191 (3%)

Query: 1   MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGK 60
           MKKQ C+    + ++  +FL    SVE+ TC+PSGKIRG+K PPGQCN+EN+SDCC +GK
Sbjct: 1   MKKQACSK---VFLICFMFLAV-SSVESQTCRPSGKIRGRKSPPGQCNRENDSDCCVQGK 56

Query: 61  LYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSR 120
           +YT Y+CSPPVTGHTKATLT+NSF   G+GG PSECDN+YHSDD+ VVALSTGW++  SR
Sbjct: 57  MYTTYKCSPPVTGHTKATLTVNSFAPGGDGGAPSECDNQYHSDDELVVALSTGWFDNKSR 116

Query: 121 CLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV--PTS 178
           CLNYI I+GNG+SVKAKVVDECDST+GCDS HDYQPPCPNNIVD SKAVWKALGV  P S
Sbjct: 117 CLNYIMIHGNGQSVKAKVVDECDSTMGCDSDHDYQPPCPNNIVDASKAVWKALGVSDPDS 176

Query: 179 RGELDIHWSDA 189
            GE+DI+WSDA
Sbjct: 177 VGEMDIYWSDA 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545110|ref|XP_002513616.1| Kiwellin, putative [Ricinus communis] gi|223547524|gb|EEF49019.1| Kiwellin, putative [Ricinus communis]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 163/191 (85%), Gaps = 6/191 (3%)

Query: 1   MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGK 60
           MKKQ+C SNI  +    VFLV   SVE+ TC+PSGKIRG KPPPGQCN+EN+SDCC +GK
Sbjct: 1   MKKQIC-SNIFFLC--FVFLVIT-SVESQTCRPSGKIRGTKPPPGQCNQENDSDCCVQGK 56

Query: 61  LYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSR 120
           +YT Y+CSPPVTGHTKATLT+NSF   G+GG PSECDN+YHSD++ VVALSTGW++  SR
Sbjct: 57  MYTTYKCSPPVTGHTKATLTVNSFAPGGDGGAPSECDNQYHSDNELVVALSTGWFDDKSR 116

Query: 121 CLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV--PTS 178
           CLN+I I+GNGKSVKAKVVDECDST+GCDS HDYQPPCPNNIVD SKAVWKALGV  P +
Sbjct: 117 CLNHIMIHGNGKSVKAKVVDECDSTMGCDSDHDYQPPCPNNIVDASKAVWKALGVSDPDN 176

Query: 179 RGELDIHWSDA 189
            GE+DI+WSDA
Sbjct: 177 VGEMDIYWSDA 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127059|ref|XP_002329376.1| predicted protein [Populus trichocarpa] gi|222870426|gb|EEF07557.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 135/190 (71%), Positives = 160/190 (84%), Gaps = 3/190 (1%)

Query: 1   MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGK 60
           MKKQV  S+++L+ +S +F  +   VEA TC+PSGKI G+K P GQCN+EN+S CC +G+
Sbjct: 1   MKKQV-WSSVLLICLSFLFASSL-CVEAQTCRPSGKIMGRKAPKGQCNEENDSLCCIKGR 58

Query: 61  LYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSR 120
           LYT Y+CSPP T HTKATLT+NSFEK G+GG PSECDN+YHSDD PVVALSTGW+N  SR
Sbjct: 59  LYTTYKCSPPATNHTKATLTLNSFEKGGDGGAPSECDNQYHSDDTPVVALSTGWFNHKSR 118

Query: 121 CLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR- 179
           CLNYINIYGNG+SVKA VVDECDST+GCD+ HDYQPPCPNNIVD SKAVW AL VP ++ 
Sbjct: 119 CLNYINIYGNGRSVKAMVVDECDSTMGCDADHDYQPPCPNNIVDASKAVWTALEVPLNQW 178

Query: 180 GELDIHWSDA 189
           GE++IHWSDA
Sbjct: 179 GEMEIHWSDA 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067880|ref|XP_002302579.1| predicted protein [Populus trichocarpa] gi|222844305|gb|EEE81852.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 150/175 (85%), Gaps = 2/175 (1%)

Query: 17  IVFLVTYG-SVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGHT 75
           +V ++TY   +EA  C+PSG+IRG  PPP QCN+EN+SDCCK+GK YT Y+CSP V+ HT
Sbjct: 14  VVLVLTYALHIEAQQCRPSGQIRGTNPPPDQCNQENDSDCCKDGKYYTTYKCSPLVSSHT 73

Query: 76  KATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSVK 135
           KATLT+NSFE  G+GG PSECDN+YHSDD PVVALSTGWYN GSRCLNY+NI+GNGKSVK
Sbjct: 74  KATLTLNSFEGGGDGGAPSECDNQYHSDDTPVVALSTGWYNHGSRCLNYVNIHGNGKSVK 133

Query: 136 AKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR-GELDIHWSDA 189
           A VVDECDST+GCDS HDYQPPC NNIVD SKAVWKALGVP S  GE+DI+WSDA
Sbjct: 134 AMVVDECDSTMGCDSDHDYQPPCANNIVDASKAVWKALGVPESDWGEMDIYWSDA 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579859|ref|XP_002530766.1| Kiwellin, putative [Ricinus communis] gi|223529682|gb|EEF31626.1| Kiwellin, putative [Ricinus communis]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/191 (68%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGK 60
           MKKQVC++    +++    ++     E+ TC+PSGK+RG KPPPGQCN+E++SDCC +G+
Sbjct: 1   MKKQVCSN----ILLICFLVLLLNGAESQTCRPSGKVRGTKPPPGQCNQEHDSDCCVQGR 56

Query: 61  LYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSR 120
           +YT Y+CSPPVTG+TKATLTINSF   G+GG PSECDNKYHSDD+ VVALSTGW++  SR
Sbjct: 57  MYTTYKCSPPVTGNTKATLTINSFAPGGDGGAPSECDNKYHSDDELVVALSTGWFDNKSR 116

Query: 121 CLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV--PTS 178
           CLNYI I+GNGKSV+AKVVDECDST+GCDS HDYQPPCPNNIVD SKAVW ALGV  P  
Sbjct: 117 CLNYITIHGNGKSVRAKVVDECDSTMGCDSEHDYQPPCPNNIVDASKAVWNALGVSDPDD 176

Query: 179 RGELDIHWSDA 189
            G +DI+WSDA
Sbjct: 177 VGAMDINWSDA 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541550|ref|XP_002511839.1| Kiwellin, putative [Ricinus communis] gi|223549019|gb|EEF50508.1| Kiwellin, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 156/191 (81%), Gaps = 6/191 (3%)

Query: 1   MKKQVCASNIILVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGK 60
           MKKQVC++    ++++   ++     E+ TC PSGKIRG+KPPPGQCN+E++SDCC EGK
Sbjct: 1   MKKQVCSN----ILLTCFLVLLLNGAESQTCGPSGKIRGRKPPPGQCNQEHDSDCCVEGK 56

Query: 61  LYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSR 120
           +YT Y CSPPVTGHTKA LTINSF   G+GGGPSECDNKYHSDD+ VVALSTGW+++ SR
Sbjct: 57  MYTTYNCSPPVTGHTKAALTINSFAPGGDGGGPSECDNKYHSDDELVVALSTGWFDRKSR 116

Query: 121 CLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV--PTS 178
           CLNYI I+GNGKSVKAKVVDECDST+GCDS HDYQPPCPNNIVD SKA+W  LGV  P  
Sbjct: 117 CLNYIMIHGNGKSVKAKVVDECDSTMGCDSDHDYQPPCPNNIVDASKAIWNTLGVSDPDD 176

Query: 179 RGELDIHWSDA 189
            G ++I WSDA
Sbjct: 177 VGAMEIVWSDA 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818444|emb|CAN71973.1| hypothetical protein VITISV_009241 [Vitis vinifera]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 148/179 (82%), Gaps = 1/179 (0%)

Query: 12  LVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPV 71
           L++++I+F   + +V+   C PSGKIRGKKPPPG+CN+ N+SDCCKEGKLYT Y+CSP V
Sbjct: 10  LLLMAILFFTDFLNVDGQVCHPSGKIRGKKPPPGECNQGNDSDCCKEGKLYTTYKCSPTV 69

Query: 72  TGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNG 131
           + HTKA LT+N FEK+ +GG PSECDN+YHSDD PVVALSTGWYNKGSRCLN I I  NG
Sbjct: 70  SSHTKAYLTLNGFEKDEDGGAPSECDNQYHSDDTPVVALSTGWYNKGSRCLNNITITANG 129

Query: 132 KSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGE-LDIHWSDA 189
           +SV A VVDECDST+GCDS HDYQPPC NNIVD S+AVW+ALGVP  + E LDI W+DA
Sbjct: 130 RSVVAMVVDECDSTMGCDSDHDYQPPCANNIVDASRAVWEALGVPRDQWEGLDITWTDA 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454170|ref|XP_002273508.1| PREDICTED: putative ripening-related protein 2-like [Vitis vinifera]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 146/176 (82%), Gaps = 1/176 (0%)

Query: 15  VSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPVTGH 74
           ++I+F + + +VE   C PSGKIRGKKPPPG+CN+ N+SDCCKEGKLYT Y+CSP ++ H
Sbjct: 1   MAILFFIDFLNVEGQVCHPSGKIRGKKPPPGECNQGNDSDCCKEGKLYTTYKCSPTLSSH 60

Query: 75  TKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNGKSV 134
           TKA LT+N FEK+ +GG PSECDN+YHSDD PVVALSTGWYNKGSRCLN I I  NG+SV
Sbjct: 61  TKAYLTLNGFEKDEDGGAPSECDNQYHSDDTPVVALSTGWYNKGSRCLNNITITANGRSV 120

Query: 135 KAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR-GELDIHWSDA 189
            A VVDECDST+GCDS HDYQPPC NNIVD S+AVWKALGVP  + G LDI W++A
Sbjct: 121 VAMVVDECDSTMGCDSDHDYQPPCANNIVDASRAVWKALGVPRDQWGGLDITWTNA 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454174|ref|XP_002273597.1| PREDICTED: putative ripening-related protein 2-like [Vitis vinifera]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 145/179 (81%), Gaps = 1/179 (0%)

Query: 12  LVIVSIVFLVTYGSVEAGTCKPSGKIRGKKPPPGQCNKENNSDCCKEGKLYTIYRCSPPV 71
           L++++I+      +VE   C PSGKIRGKKPPPG+CN+ N+SDCCKEGKLYT Y+CSP V
Sbjct: 10  LLLIAILVFTDCLNVEGQVCHPSGKIRGKKPPPGECNQGNDSDCCKEGKLYTTYKCSPTV 69

Query: 72  TGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYGNG 131
           + H+KA LT+N FEK+ +GG PSECDN YHSDD PVVALSTGWYNKGSRCLN I I  NG
Sbjct: 70  SSHSKAYLTLNGFEKDEDGGAPSECDNHYHSDDTPVVALSTGWYNKGSRCLNNITITANG 129

Query: 132 KSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSR-GELDIHWSDA 189
           +SV A VVDECDST+GCDS HDYQPPC NNIVD S+AVWKALGVP  + G LDI W+DA
Sbjct: 130 RSVVAMVVDECDSTMGCDSDHDYQPPCANNIVDASRAVWKALGVPQDQWGGLDITWTDA 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6H5X0	RIP2_ORYSJ	No assigned EC number	0.5189	0.9047	0.8906	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II001463 hypothetical protein (188 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
pfam03330	77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	2e-04

>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 25/91 (27%)

Query: 107 VVALSTGWYNKGSRCLNYINIYGN-----------GKSVKAKVVDECDSTVGCDSVHDYQ 155
             A S   YN G+ C     +               +SV   + D C             
Sbjct: 1   TAAGSASLYNDGTACGECYQVKCLTAAHPTGTCRVLRSVTVTITDRC------------- 47

Query: 156 PPCPNNIVDGSKAVWKALGVPTSRGELDIHW 186
           P  P    D S   ++AL  P   G + + +
Sbjct: 48  PFPPRRHFDLSGPAFEALAKP-RAGIVPVEY 77

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.79
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.68
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.39
PLN00193	256	expansin-A; Provisional	99.28
PLN00050	247	expansin A; Provisional	99.24
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	98.75
PLN03023	247	Expansin-like B1; Provisional	98.73
PRK10672	361	rare lipoprotein A; Provisional	98.69
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	98.32
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	98.25
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	97.9
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	97.65

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.79  E-value=7.9e-19  Score=138.89  Aligned_cols=93  Identities=24%  Similarity=0.390  Sum_probs=79.1

Q ss_pred             ceEEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe-----------CCcEEEEEEeecCCC
Q 037386           76 KATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG-----------NGKSVKAKVVDECDS  144 (189)
Q Consensus        76 ~a~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~-----------nGkSV~a~VVD~Cds  144 (189)
                      ....+.|+|++    +.++||+ ..+.+++++|||++..|++++.||++++|+.           |||+|+++|+|+|+ 
T Consensus        21 ~~~G~AT~Y~~----~~~gAC~-~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP-   94 (125)
T PLN03024         21 ATPGIATFYTS----YTPSACY-RGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCP-   94 (125)
T ss_pred             ccceEEEEeCC----CCCcccc-CCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCC-
Confidence            34456789974    3456997 4577889999999999999999999999983           68999999999994 


Q ss_pred             CCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEEEEEE
Q 037386          145 TVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWS  187 (189)
Q Consensus       145 ~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~ItWs  187 (189)
                                 ++|. ++||||+++|++|+ +.+.|+++|+|.
T Consensus        95 -----------~~C~-~~~DLS~~AF~~iA-~~~aG~v~V~y~  124 (125)
T PLN03024         95 -----------SGCA-STLDLSREAFAQIA-NPVAGIINIDYI  124 (125)
T ss_pred             -----------CCCC-CceEcCHHHHHHhc-CccCCEEEEEEe
Confidence                       2575 59999999999999 789999999996

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.68  E-value=6.2e-17  Score=116.29  Aligned_cols=65  Identities=38%  Similarity=0.704  Sum_probs=57.5

Q ss_pred             EEeeccccCCCCCCccEEEEEe-----C-----C--cEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 037386          108 VALSTGWYNKGSRCLNYINIYG-----N-----G--KSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV  175 (189)
Q Consensus       108 VALstgw~~~~~~CGk~I~It~-----n-----G--kSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~  175 (189)
                      ||++..||+++..||++++++.     .     .  |+|+|+|+|+|             |+|.+++||||+++|++|+ 
T Consensus         2 ~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~C-------------p~~~~~~lDLS~~aF~~la-   67 (78)
T PF03330_consen    2 AAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRC-------------PGCPPNHLDLSPAAFKALA-   67 (78)
T ss_dssp             EEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE--------------TTSSSSEEEEEHHHHHHTB-
T ss_pred             eEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccC-------------CCCcCCEEEeCHHHHHHhC-
Confidence            7899999999999999999986     1     2  99999999999             7899999999999999999 


Q ss_pred             CCCCcEEEEEE
Q 037386          176 PTSRGELDIHW  186 (189)
Q Consensus       176 ~~~~G~i~ItW  186 (189)
                      +.+.|+++|+|
T Consensus        68 ~~~~G~i~V~w   78 (78)
T PF03330_consen   68 DPDAGVIPVEW   78 (78)
T ss_dssp             STTCSSEEEEE
T ss_pred             CCCceEEEEEC
Confidence            78999999999

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.39  E-value=6.9e-13  Score=98.90  Aligned_cols=77  Identities=19%  Similarity=0.331  Sum_probs=60.7

Q ss_pred             eEEeeccccCCCCCCccEEEEEe--------CCcEEEEEEeecCCCCCCCCCCCCCCCCCC--CCeeecCHHHHHHhCCC
Q 037386          107 VVALSTGWYNKGSRCLNYINIYG--------NGKSVKAKVVDECDSTVGCDSVHDYQPPCP--NNIVDGSKAVWKALGVP  176 (189)
Q Consensus       107 VVALstgw~~~~~~CGk~I~It~--------nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~--~n~IDlS~avf~aLg~~  176 (189)
                      .+|+++.+|+++..||.+++|+-        +|++|+++|+|+|+...+..++  -..-|.  ..|+|||..+|.+|+ .
T Consensus         1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~--~~~~C~~~~~hfDLS~~AF~~iA-~   77 (87)
T smart00837        1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSND--NGGWCNPPRKHFDLSQPAFEKIA-Q   77 (87)
T ss_pred             CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCcccccccc--CCCccCCCCcCeEcCHHHHHHHh-h
Confidence            37999999999999999999982        4579999999999753221100  002263  479999999999999 7


Q ss_pred             CCCcEEEEEE
Q 037386          177 TSRGELDIHW  186 (189)
Q Consensus       177 ~~~G~i~ItW  186 (189)
                      ...|+|+|+|
T Consensus        78 ~~~Gvi~v~y   87 (87)
T smart00837       78 YKAGIVPVKY   87 (87)
T ss_pred             hcCCEEeeEC
Confidence            8999999987

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PLN00193 expansin-A; Provisional

Probab=99.28  E-value=2e-11  Score=106.86  Aligned_cols=105  Identities=18%  Similarity=0.304  Sum_probs=74.2

Q ss_pred             Eeeecc-CCCCCCCCCCCCCc---CCCCCceEEeeccccCCCCCCccEEEEEe----------CCcEEEEEEeecCCCCC
Q 037386           81 INSFEK-NGEGGGPSECDNKY---HSDDDPVVALSTGWYNKGSRCLNYINIYG----------NGKSVKAKVVDECDSTV  146 (189)
Q Consensus        81 ~t~f~~-g~~gGg~gaCg~~~---~sd~d~VVALstgw~~~~~~CGk~I~It~----------nGkSV~a~VVD~Cds~~  146 (189)
                      .|+|.. .+.|..-||||..-   ....-+++||++..|+++..||.+++|+-          +|++|+++|+|.||...
T Consensus        35 AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~  114 (256)
T PLN00193         35 ATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNY  114 (256)
T ss_pred             EEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcc
Confidence            467752 11121236999531   11245899999999999999999999984          47799999999996421


Q ss_pred             CCCCCCCCCCCCC--CCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386          147 GCDSVHDYQPPCP--NNIVDGSKAVWKALGVPTSRGELDIHWSD  188 (189)
Q Consensus       147 gCd~~~~~~p~C~--~n~IDlS~avf~aLg~~~~~G~i~ItWs~  188 (189)
                      +  .+.+...-|.  ..|+|||..+|.+|+ ....|+++|+|+-
T Consensus       115 ~--~~~~~ggwC~~~~~HFDLS~~AF~~iA-~~~~Giv~V~yrR  155 (256)
T PLN00193        115 A--LPNNNGGWCNPPLQHFDMAQPAWEKIG-IYRGGIVPVLFQR  155 (256)
T ss_pred             c--ccccCCCcCCCCCcccccCHHHHHHHh-hhcCCeEeEEEEE
Confidence            1  0000011263  379999999999999 6789999999963

>PLN00050 expansin A; Provisional

Probab=99.24  E-value=4.1e-11  Score=104.47  Aligned_cols=92  Identities=18%  Similarity=0.292  Sum_probs=69.6

Q ss_pred             CCCCCCc-C--CCCCceEEeeccccCCCCCCccEEEEEe-CC------cEEEEEEeecCCCCCCCCCCCCCCCCCC--CC
Q 037386           94 SECDNKY-H--SDDDPVVALSTGWYNKGSRCLNYINIYG-NG------KSVKAKVVDECDSTVGCDSVHDYQPPCP--NN  161 (189)
Q Consensus        94 gaCg~~~-~--sd~d~VVALstgw~~~~~~CGk~I~It~-nG------kSV~a~VVD~Cds~~gCd~~~~~~p~C~--~n  161 (189)
                      ||||..- .  ....+++||++..|+++..||.+++|+- ++      ++|+++|+|+||...+..  .+...-|.  ..
T Consensus        44 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~--~~~~gwC~~~~~  121 (247)
T PLN00050         44 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALP--NNDGGWCNPPQQ  121 (247)
T ss_pred             cccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcC--ccCCCcCCCCCc
Confidence            6999432 1  1256899999999999999999999995 32      489999999997432210  00011263  48


Q ss_pred             eeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386          162 IVDGSKAVWKALGVPTSRGELDIHWSD  188 (189)
Q Consensus       162 ~IDlS~avf~aLg~~~~~G~i~ItWs~  188 (189)
                      |+|||+.+|.+|+ ....|+|+|+|+-
T Consensus       122 hFDLS~~AF~~iA-~~~aGii~V~yRR  147 (247)
T PLN00050        122 HFDLSQPVFQKIA-QYKAGIVPVQYRR  147 (247)
T ss_pred             ccccCHHHHHHHh-hhcCCeeeeEEEE
Confidence            9999999999999 7889999999963

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=98.75  E-value=1.4e-08  Score=79.99  Aligned_cols=56  Identities=20%  Similarity=0.432  Sum_probs=41.3

Q ss_pred             CCCCCccEEEEEe--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCC---CCcEEEEEEEe
Q 037386          117 KGSRCLNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPT---SRGELDIHWSD  188 (189)
Q Consensus       117 ~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~---~~G~i~ItWs~  188 (189)
                      +...|||+++||.  +|.+++++|||+|                .++.|||.+.||.+|-.+-   ..|.+.|+|+|
T Consensus        56 gq~~CGkClrVTNt~tga~~~~RIVDqC----------------snGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~f  116 (119)
T PF00967_consen   56 GQDSCGKCLRVTNTATGAQVTVRIVDQC----------------SNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEF  116 (119)
T ss_dssp             SGGGTT-EEEEE-TTT--EEEEEEEEE-----------------SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEE
T ss_pred             CcccccceEEEEecCCCcEEEEEEEEcC----------------CCCCcccChhHHhhhccCCcccccceEEEEEEE
Confidence            3568999999996  7999999999999                4567999999999996322   37899999987

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PLN03023 Expansin-like B1; Provisional

Probab=98.73  E-value=7.4e-08  Score=84.21  Aligned_cols=79  Identities=18%  Similarity=0.245  Sum_probs=62.5

Q ss_pred             CCCCCCc---CCCCCceEEeeccccCCCCCCccEEEEEe------CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeee
Q 037386           94 SECDNKY---HSDDDPVVALSTGWYNKGSRCLNYINIYG------NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVD  164 (189)
Q Consensus        94 gaCg~~~---~sd~d~VVALstgw~~~~~~CGk~I~It~------nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~ID  164 (189)
                      ||||..-   ....-.++|++ ..|+++.-||.+.+|+-      .+++|+++|+|.|             ++ ...|+|
T Consensus        44 GACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd~~-------------~~-~~~hFd  108 (247)
T PLN03023         44 GACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYG-------------EG-DKTDFI  108 (247)
T ss_pred             ccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEeCC-------------CC-CCCccc
Confidence            4898421   22346789998 99999999999999983      4668999999999             33 357999


Q ss_pred             cCHHHHHHhCCC------CCCcEEEEEEE
Q 037386          165 GSKAVWKALGVP------TSRGELDIHWS  187 (189)
Q Consensus       165 lS~avf~aLg~~------~~~G~i~ItWs  187 (189)
                      ||..+|.+|+.+      ...|+|+|+++
T Consensus       109 LS~~AF~~iA~pg~~~~l~~aGiv~v~Yr  137 (247)
T PLN03023        109 LSPRAYARLARPNMAAELFAYGVVDVEYR  137 (247)
T ss_pred             cCHHHHHHHhCccccchhccCcEEEeEEE
Confidence            999999999842      34699999874

>PRK10672 rare lipoprotein A; Provisional

Probab=98.69  E-value=6.1e-07  Score=82.21  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=80.1

Q ss_pred             CCCCCCccccCCeEEeeeecCCCcccccceEEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEE
Q 037386           48 NKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINI  127 (189)
Q Consensus        48 ~~~~~~~cc~~g~~Y~~~~csp~v~~~t~a~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~I  127 (189)
                      +.....+-=+.|+.|+..+=    ...-.......||... -.|..++-|+.|+. ..+.+|-.+-      --+..|+|
T Consensus        54 ~~~~n~~Y~v~G~~Y~~~~~----~~~~~~~G~ASwYg~~-f~G~~TA~Ge~~~~-~~~tAAH~tL------Plps~vrV  121 (361)
T PRK10672         54 NPTANQDYQRNGKSYKIVQD----PSNFSQAGLAAIYDAE-AGSNLTASGERFDP-NALTAAHPTL------PIPSYVRV  121 (361)
T ss_pred             CccCCCCeEECCEEEEeCcc----CCCcceEEEEEEeCCc-cCCCcCcCceeecC-CcCeeeccCC------CCCCEEEE
Confidence            34444456678999998541    1223345666777653 34678999977754 5666665432      57789999


Q ss_pred             Ee--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEEEE
Q 037386          128 YG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIH  185 (189)
Q Consensus       128 t~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~It  185 (189)
                      |.  |||+|+++|.|++++..             ..+||||.+++++||. ...+++.|+
T Consensus       122 tNl~ngrsvvVrVnDRGP~~~-------------gRiiDLS~aAA~~Lg~-~~~~~V~ve  167 (361)
T PRK10672        122 TNLANGRMIVVRINDRGPYGP-------------GRVIDLSRAAADRLNT-SNNTKVRID  167 (361)
T ss_pred             EECCCCcEEEEEEeCCCCCCC-------------CCeeEcCHHHHHHhCC-CCCceEEEE
Confidence            95  99999999999997543             4799999999999995 456777665

>TIGR00413 rlpA rare lipoprotein A

Probab=98.32  E-value=4.1e-06  Score=71.83  Aligned_cols=74  Identities=23%  Similarity=0.282  Sum_probs=58.6

Q ss_pred             CCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHH
Q 037386           91 GGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKA  168 (189)
Q Consensus        91 Gg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~a  168 (189)
                      |..+|.|..|+. ..+.+|-.+-      ..|..|+|+.  |||+|+++|.|++|+..             ..+||||++
T Consensus        12 G~~TAnGe~y~~-~~~tAAHktL------PlgT~V~VtNl~ngrsviVrVnDRGPf~~-------------gRiIDLS~a   71 (208)
T TIGR00413        12 GRKTANGEVYNM-KALTAAHKTL------PFNTYVKVTNLHNNRSVIVRINDRGPFSD-------------DRIIDLSHA   71 (208)
T ss_pred             CCcCCCCeecCC-CccccccccC------CCCCEEEEEECCCCCEEEEEEeCCCCCCC-------------CCEEECCHH
Confidence            678899977755 5566665432      6888999995  99999999999997643             379999999


Q ss_pred             HHHHhCCCCCCcEEEEE
Q 037386          169 VWKALGVPTSRGELDIH  185 (189)
Q Consensus       169 vf~aLg~~~~~G~i~It  185 (189)
                      ++++|| -.+.|+.+|.
T Consensus        72 AA~~Lg-~~~~G~a~V~   87 (208)
T TIGR00413        72 AAREIG-LISRGVGQVR   87 (208)
T ss_pred             HHHHcC-CCcCceEEEE
Confidence            999999 5667776654

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=98.25  E-value=5.6e-05  Score=65.85  Aligned_cols=103  Identities=21%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             CCeEEeeeecCCCcccccceEEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe--CCcEEE
Q 037386           58 EGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG--NGKSVK  135 (189)
Q Consensus        58 ~g~~Y~~~~csp~v~~~t~a~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~--nGkSV~  135 (189)
                      .|+.|....    ......-..+..||.+ +=.|-.+|=|+.|+. ..+.+|=.+=      .-+-.++||.  |||+|+
T Consensus        68 ~g~~y~~~~----~~~~~~~~G~ASwYg~-~fhgr~TA~Ge~~n~-~~~tAAH~TL------P~~t~v~VtNl~Ngrsvv  135 (233)
T COG0797          68 KGKSYYPKA----EPASFEQVGYASWYGE-KFHGRKTANGERYDM-NALTAAHKTL------PLPTYVRVTNLDNGRSVV  135 (233)
T ss_pred             eeeEEEeee----ccccccccceeeeecc-ccCCccccCcccccc-cccccccccC------CCCCEEEEEEccCCcEEE
Confidence            456665543    2223333445556652 223445555544432 3333332221      4677899996  999999


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEE--EEE
Q 037386          136 AKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELD--IHW  186 (189)
Q Consensus       136 a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~--ItW  186 (189)
                      ++|.|++|+..             ..+||||.+++++|+ -.+.|+.+  |+|
T Consensus       136 VRINDRGPf~~-------------gRiIDlS~aAA~~l~-~~~~G~a~V~i~~  174 (233)
T COG0797         136 VRINDRGPFVS-------------GRIIDLSKAAADKLG-MIRSGVAKVRIEV  174 (233)
T ss_pred             EEEeCCCCCCC-------------CcEeEcCHHHHHHhC-CccCceEEEEEEE
Confidence            99999997654             489999999999999 56677665  555

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=97.90  E-value=5.5e-05  Score=59.89  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=46.1

Q ss_pred             ceEEee--ccccCCCCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC--CCCCcE
Q 037386          106 PVVALS--TGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV--PTSRGE  181 (189)
Q Consensus       106 ~VVALs--tgw~~~~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~--~~~~G~  181 (189)
                      +|.+..  ++| | .+.||++.++++|||+|.+..+|.=.                 ..+++|+++|+.|..  ....|+
T Consensus        44 ~IGg~~~V~gW-n-S~~CGtC~~lty~g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~a~~lG~  104 (119)
T PF07249_consen   44 YIGGAPAVAGW-N-SPNCGTCWKLTYNGRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQAVELGR  104 (119)
T ss_dssp             SEEEETT--ST-T--TTTT-EEEEEETTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-CCCC-E
T ss_pred             eeccccccccC-C-CCCCCCeEEEEECCeEEEEEEEecCC-----------------CcccchHHHHHHhcCCcccceeE
Confidence            355554  356 4 47999999999999999999999752                 349999999999953  456999


Q ss_pred             EEEEEEe
Q 037386          182 LDIHWSD  188 (189)
Q Consensus       182 i~ItWs~  188 (189)
                      |++++..
T Consensus       105 V~a~~~q  111 (119)
T PF07249_consen  105 VDATYTQ  111 (119)
T ss_dssp             EE-EEEE
T ss_pred             EEEEEEE
Confidence            9999864

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.00015  Score=61.58  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=60.8

Q ss_pred             CcCCCCCceEEeeccccCC----CCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhC
Q 037386           99 KYHSDDDPVVALSTGWYNK----GSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALG  174 (189)
Q Consensus        99 ~~~sd~d~VVALstgw~~~----~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg  174 (189)
                      ++.+ +.-|-||+....|-    .+.-|..++|+....+.++.|.|.-             |.=..+.||||+.+|.++|
T Consensus        51 PI~s-d~eITAlNPaqlNlGGipAAmAGaYLrVqGPKG~TTVYVTDlY-------------PegasGaLDLSpNAFakIG  116 (232)
T COG4305          51 PIPS-DMEITALNPAQLNLGGIPAAMAGAYLRVQGPKGKTTVYVTDLY-------------PEGASGALDLSPNAFAKIG  116 (232)
T ss_pred             CcCC-cceeeecCHHHcccCCchhhhccceEEEECCCCceEEEEeccc-------------ccccccccccChHHHhhhc
Confidence            3444 45588999998883    4578999999995444678999988             4446689999999999999


Q ss_pred             CCCCCcEEEEEEEe
Q 037386          175 VPTSRGELDIHWSD  188 (189)
Q Consensus       175 ~~~~~G~i~ItWs~  188 (189)
                       +..+|+|+|.|+.
T Consensus       117 -nm~qGrIpvqWrv  129 (232)
T COG4305         117 -NMKQGRIPVQWRV  129 (232)
T ss_pred             -chhcCccceeEEE
Confidence             8999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	9e-08

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 49.1 bits (117), Expect = 9e-08
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 18/103 (17%)

Query: 88  GEGGGPSECDNKYHSDDDPVVALSTGWYNKGSR----CLNYINIYGNGKSVKAKVVDECD 143
           G G             D  + A++    N G        +Y+ + G        V D   
Sbjct: 15  GSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKGKTTVYVTDLY- 73

Query: 144 STVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHW 186
                       P      +D S   ++ +G     G+++I W
Sbjct: 74  ------------PEGARGALDLSPNAFRKIGNM-KDGKINIKW 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	99.8
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.63
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	99.62
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	99.54
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.46
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	98.84
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	97.57
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	97.47
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	97.36
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	97.26
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	97.14
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	97.11

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=99.80  E-value=1.3e-19  Score=151.68  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             EEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCC----CCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCC
Q 037386           78 TLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKG----SRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHD  153 (189)
Q Consensus        78 ~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~----~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~  153 (189)
                      ..+.|+|..+.   ..||||..-...++++|||++.+|+++    ..||++|+|+.++++|+|+|+|+|           
T Consensus         8 ~G~aT~Y~~g~---~~GACG~~~~~~~~~~aAls~~~f~~G~~~~~~CG~c~~v~~~~gsv~V~v~D~C-----------   73 (208)
T 3d30_A            8 EGYATYTGSGY---SGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKGKTTVYVTDLY-----------   73 (208)
T ss_dssp             EEEEEECSTTS---SSCTTCCCCCCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEETTEEEEEEEEEEC-----------
T ss_pred             EEEEEEcCCCC---CCCcCCCCCCCCCCEEEEeCHHHhCCCCcCccccCCEEEEEeCCCcEEEEEEECC-----------
Confidence            34667887643   346999432224689999999999976    799999999998889999999999           


Q ss_pred             CCCCCCCCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386          154 YQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSD  188 (189)
Q Consensus       154 ~~p~C~~n~IDlS~avf~aLg~~~~~G~i~ItWs~  188 (189)
                        |+|..+|||||+.+|++|+ .++.|+++|+|++
T Consensus        74 --P~C~~~~~DLS~~aF~~la-~~~~G~i~v~~~~  105 (208)
T 3d30_A           74 --PEGARGALDLSPNAFRKIG-NMKDGKINIKWRV  105 (208)
T ss_dssp             --TTCCTTCEEECHHHHHHHS-CGGGSSEEEEEEE
T ss_pred             --CCCCCCeEECCHHHHHHhc-ccCCCEEEEEEEE
Confidence              7899999999999999998 7899999999986

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=99.63  E-value=4.6e-17  Score=127.91  Aligned_cols=96  Identities=15%  Similarity=0.331  Sum_probs=75.1

Q ss_pred             cceEEEEeeeccCCCC------CCCCCCCCCcCCCCCceEEeecccc---------CCCCCCccEEEEEe--CCcEEEEE
Q 037386           75 TKATLTINSFEKNGEG------GGPSECDNKYHSDDDPVVALSTGWY---------NKGSRCLNYINIYG--NGKSVKAK  137 (189)
Q Consensus        75 t~a~lt~t~f~~g~~g------Gg~gaCg~~~~sd~d~VVALstgw~---------~~~~~CGk~I~It~--nGkSV~a~  137 (189)
                      .....|+++|++.+.+      -..++|+ .+. ++.++++++..+|         +++..||++|+|+.  |||+|+|+
T Consensus         4 ~~~~~ty~~y~~~~~~~~~~~~~~s~~C~-t~d-a~~~~~~~~~y~wtA~~g~~gp~~g~~CG~cv~Vtn~~nGksV~V~   81 (125)
T 1bw3_A            4 NDVRATYHYYRPAQNNWDLGAPAVSAYCA-TWD-ASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITAR   81 (125)
T ss_dssp             EEEEEECCCSSCGGGTTCTTSTTTCCTTH-HHH-TTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEEE
T ss_pred             cceEEEEEEecCCCcCcccccceeeEeee-ccc-CCCceeEecCCCceEeccCCCCCCCcccCCEEEeEeCCCCCEEEEE
Confidence            4566788899884433      1346899 443 4556778877666         56779999999996  69999999


Q ss_pred             EeecCCCCCCCCCCCCCCCCCCCCeeecC-HHHHHHhCCC---CCCcEEEEEEEe
Q 037386          138 VVDECDSTVGCDSVHDYQPPCPNNIVDGS-KAVWKALGVP---TSRGELDIHWSD  188 (189)
Q Consensus       138 VVD~Cds~~gCd~~~~~~p~C~~n~IDlS-~avf~aLg~~---~~~G~i~ItWs~  188 (189)
                      |||+|             |+|.   |||| +++|++|+.+   .+.|+++|+|+|
T Consensus        82 VvD~C-------------P~gg---LDLS~~~AF~~Ia~~g~G~~~G~i~V~w~~  120 (125)
T 1bw3_A           82 IVDQC-------------ANGG---LDLDWDTVFTKIDTNGIGYQQGHLNVNYQF  120 (125)
T ss_dssp             EEECC-------------SSSS---CCSCSSSSHHHHCSSCHHHHHSEEEEEEEE
T ss_pred             EEEeC-------------CCCC---CCCCCHHHHHHHhccCCcccCcEEEEEEEE
Confidence            99999             5553   9999 9999999932   668999999987

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=99.62  E-value=3.3e-15  Score=128.10  Aligned_cols=98  Identities=15%  Similarity=0.220  Sum_probs=77.2

Q ss_pred             EEEeeeccCCCCC---CCCCCCCCcC---CCCCceEEeeccccCCCCCCccEEEEEeC------CcEEEEEEeecCCCCC
Q 037386           79 LTINSFEKNGEGG---GPSECDNKYH---SDDDPVVALSTGWYNKGSRCLNYINIYGN------GKSVKAKVVDECDSTV  146 (189)
Q Consensus        79 lt~t~f~~g~~gG---g~gaCg~~~~---sd~d~VVALstgw~~~~~~CGk~I~It~n------GkSV~a~VVD~Cds~~  146 (189)
                      .+.|+|......|   ..||||....   ..+.+++||++..|+++..||++++|+..      +++|+|+|+|+|+   
T Consensus        22 g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~sv~V~VtD~C~---   98 (245)
T 2hcz_X           22 ARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNY---   98 (245)
T ss_dssp             EEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEEEEEECC---
T ss_pred             eEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCCCEEEEEEeccC---
Confidence            4568887532222   2489984321   12689999999999999999999999974      7899999999992   


Q ss_pred             CCCCCCCCCCCCCCCeeecCHHHHHHhCCC------CCCcEEEEEEEe
Q 037386          147 GCDSVHDYQPPCPNNIVDGSKAVWKALGVP------TSRGELDIHWSD  188 (189)
Q Consensus       147 gCd~~~~~~p~C~~n~IDlS~avf~aLg~~------~~~G~i~ItWs~  188 (189)
                       |        ++..+|||||+.||++|+.+      ...|+|+|+|++
T Consensus        99 -C--------~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrr  137 (245)
T 2hcz_X           99 -E--------PIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRR  137 (245)
T ss_dssp             -C--------TTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEE
T ss_pred             -C--------CCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEE
Confidence             2        11568999999999999943      789999999975

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=99.54  E-value=1.2e-14  Score=124.44  Aligned_cols=98  Identities=19%  Similarity=0.249  Sum_probs=73.8

Q ss_pred             EEEeeeccCCCCC---CCCCCCCCc-C--CCCCceEEeeccccCCCCCCccEEEEEeC------CcEEEEEEeecCCCCC
Q 037386           79 LTINSFEKNGEGG---GPSECDNKY-H--SDDDPVVALSTGWYNKGSRCLNYINIYGN------GKSVKAKVVDECDSTV  146 (189)
Q Consensus        79 lt~t~f~~g~~gG---g~gaCg~~~-~--sd~d~VVALstgw~~~~~~CGk~I~It~n------GkSV~a~VVD~Cds~~  146 (189)
                      -+.|+|......|   ..||||... .  ....+++||++..|+++..||++++|+..      +++|+++|+|+|    
T Consensus        22 g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~~C~~~~v~V~VtD~C----   97 (241)
T 1n10_A           22 AKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDN----   97 (241)
T ss_dssp             EEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEEC----
T ss_pred             eEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCCccCCCCEEEEEeEec----
Confidence            3567887532212   257998432 1  12568999999999999999999999974      789999999999    


Q ss_pred             CCCCCCCCCCCCCCCeeecCHHHHHHhCCC------CCCcEEEEEEEe
Q 037386          147 GCDSVHDYQPPCPNNIVDGSKAVWKALGVP------TSRGELDIHWSD  188 (189)
Q Consensus       147 gCd~~~~~~p~C~~n~IDlS~avf~aLg~~------~~~G~i~ItWs~  188 (189)
                      .|       ++ ..+|||||+.+|++|+.+      ...|+|+|+|+.
T Consensus        98 ~C-------~~-~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrr  137 (241)
T 1n10_A           98 EE-------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRR  137 (241)
T ss_dssp             SS-------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEE
T ss_pred             CC-------CC-CCcceecCHHHHHHhhccCcccccccCCEEEEEEEE
Confidence            23       12 357999999999999943      689999999975

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.46  E-value=3.8e-13  Score=101.22  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=72.2

Q ss_pred             EEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe--CCcEEEEEEeecCCCCCCCCCCCCCCCC
Q 037386           80 TINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPP  157 (189)
Q Consensus        80 t~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~  157 (189)
                      ...||.+.- .|..+|||+.| +..++.+|..+      -.||..|+|+.  |||+|+++|.|+|             |-
T Consensus         5 ~ASwYg~~f-~G~~TA~Ge~~-~~~~~tAAH~t------lP~gt~vrVtNl~nGksVvVrVnDRG-------------P~   63 (95)
T 4avr_A            5 EASYYGSRH-AGLRTASGERY-NPNAMTAAHRT------LPFGARVRVTNLDNRRSVVVRINDRG-------------PF   63 (95)
T ss_dssp             EEEECCGGG-TTSBCTTSCBC-CTTSCEEECSS------SCTTCEEEEEETTTCCEEEEEEEECC-------------CC
T ss_pred             EEEEECCcc-CCCCCCCccCc-CCCCCEEEcCC------CCCCcEEEEEECCCCcEEEEEEccCC-------------CC
Confidence            445665421 26789999666 55789999874      36999999995  9999999999999             66


Q ss_pred             CCCCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386          158 CPNNIVDGSKAVWKALGVPTSRGELDIHWSD  188 (189)
Q Consensus       158 C~~n~IDlS~avf~aLg~~~~~G~i~ItWs~  188 (189)
                      |...+||||+++|++|| ..+.|+.+|+|+.
T Consensus        64 ~~griIDLS~aAa~~Lg-~~~~G~~~V~ve~   93 (95)
T 4avr_A           64 RRGRIIDVSRKAAEGLG-MIRSGVAPVRIES   93 (95)
T ss_dssp             STTEEEEECHHHHHHHT-CTTTSCEEEEEEE
T ss_pred             CCCCEEEeCHHHHHHhC-CcCCCEEEEEEEE
Confidence            78899999999999999 6889999999974

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=98.84  E-value=4.5e-09  Score=86.95  Aligned_cols=104  Identities=13%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             EEEeeeccCCCCCCCCCCCCCcCC--------CCCceEEeeccccCCC------CCCccEEEEEe-------------CC
Q 037386           79 LTINSFEKNGEGGGPSECDNKYHS--------DDDPVVALSTGWYNKG------SRCLNYINIYG-------------NG  131 (189)
Q Consensus        79 lt~t~f~~g~~gGg~gaCg~~~~s--------d~d~VVALstgw~~~~------~~CGk~I~It~-------------nG  131 (189)
                      ...|+|..+ .+   ||||-.-.+        -..+++|||+.+|+++      ..||++++|+-             .|
T Consensus        17 A~aT~Yg~~-~g---GACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg~~~~~g   92 (181)
T 1wc2_A           17 ASTTNYHDS-HK---GACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREG   92 (181)
T ss_dssp             EEEEEECCC-BC---TTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTT
T ss_pred             cceeEecCC-CC---cccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCcccccccCCCC
Confidence            345677642 23   488843101        1467999999999986      79999999992             47


Q ss_pred             cEEEEEEeecCCC----CCCCCCC--CCCCCCC-CCCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386          132 KSVKAKVVDECDS----TVGCDSV--HDYQPPC-PNNIVDGSKAVWKALGVPTSRGELDIHWSD  188 (189)
Q Consensus       132 kSV~a~VVD~Cds----~~gCd~~--~~~~p~C-~~n~IDlS~avf~aLg~~~~~G~i~ItWs~  188 (189)
                      ++|++||+|.||-    ..+|..+  .+..-.. ...|+|||..+ .+++ ....|+++|+|+.
T Consensus        93 ~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia-~~~~GivpV~yrr  154 (181)
T 1wc2_A           93 LSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVT-GMGWNNPETTWEV  154 (181)
T ss_dssp             CEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTG-GGTCSSEEEEEEE
T ss_pred             CeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhh-hhcCCCceeEEEE
Confidence            8999999999982    2456421  0000001 13699999999 6776 5678999999974

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=97.57  E-value=0.00012  Score=56.99  Aligned_cols=54  Identities=13%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             CCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCC--CcEEEEEEEe
Q 037386          118 GSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTS--RGELDIHWSD  188 (189)
Q Consensus       118 ~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~--~G~i~ItWs~  188 (189)
                      .+.||++.++++|||+|.+..+|.=.                 ..+++|+++|+.|...+.  .|+|+++|..
T Consensus        57 s~~CGtC~~lty~g~si~vlaID~a~-----------------~Gfnis~~A~n~LT~G~a~~lG~V~a~~~~  112 (120)
T 3m3g_A           57 SASCGTCWKLQYSGHTIYVLAVDHAA-----------------SGFNIALDAMNALTGGQAVQLGRVSATATQ  112 (120)
T ss_dssp             CTTTTCEEEEEETTEEEEEEEEEECS-----------------SSEEECHHHHHHHHTSCHHHHCEEECEEEE
T ss_pred             CCCCCceEEEEECCeEEEEEEEecCC-----------------CceeecHHHHHHhhCCcceeeeeEeEEEEE
Confidence            48999999999999999999999762                 359999999999964443  5999999864

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=97.47  E-value=0.00017  Score=56.76  Aligned_cols=56  Identities=16%  Similarity=0.275  Sum_probs=48.4

Q ss_pred             cCCCCCCccEEEEEe-CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEE-EEEEEe
Q 037386          115 YNKGSRCLNYINIYG-NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGEL-DIHWSD  188 (189)
Q Consensus       115 ~~~~~~CGk~I~It~-nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i-~ItWs~  188 (189)
                      || .++||++.+|++ |||+|.+..+|.=.                 +.+++++++|+.|......|+| ++++..
T Consensus        61 WN-S~~CGtC~~lty~ng~sI~vlaID~A~-----------------~gFnIs~~Amn~LT~G~~lG~V~~a~~~q  118 (129)
T 2kqa_A           61 WD-SPSCGTCWKVTIPNGNSIFIRGVDSGR-----------------GGFNVNPTAFTKLVGSTEAGRVDNVNYVQ  118 (129)
T ss_dssp             TT-CTTCSCEEEEEETTTEEEEEEEEEECS-----------------SSEEECHHHHHHHHSSSSSCCBCSCEEEE
T ss_pred             CC-CCCCCceEEEEEcCCCEEEEEEEccCC-----------------CceeehHHHHHHhcCCcccCcEeEEEEEE
Confidence            45 589999999999 99999999999762                 3599999999999645779999 888865

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=97.36  E-value=0.0004  Score=54.15  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             cCCCCCCccEEEEEeC--CcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCC--CcEEEEEEEe
Q 037386          115 YNKGSRCLNYINIYGN--GKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTS--RGELDIHWSD  188 (189)
Q Consensus       115 ~~~~~~CGk~I~It~n--GkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~--~G~i~ItWs~  188 (189)
                      ||. +.||++.+++++  ||+|.+..+|.=.                 ..++++.++|+.|...+.  .|+|++++..
T Consensus        55 wnS-~~CGtC~~lty~~~g~si~vlaID~a~-----------------~Gfnis~~Amn~LT~G~a~~lG~V~a~~~q  114 (122)
T 3sul_A           55 WNS-ESCGTCYQITWSGTGKTIHVVGVDVAG-----------------NGFNVGQRAMDDLTNGQAVALGNIDVTATL  114 (122)
T ss_dssp             TTC-TTTTCEEEEEETTTTEEEEEEEEEECS-----------------SSEEECHHHHHHHHTSCHHHHSEEEEEEEE
T ss_pred             CCC-CCCCceEEEEEcCCCcEEEEEEEecCC-----------------CceeehHHHHHHhcCCcceecceEeEEEEE
Confidence            344 899999999998  9999999999762                 349999999999964433  6999999864

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=97.26  E-value=0.00076  Score=53.49  Aligned_cols=64  Identities=19%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             ceEEeeccccCCCCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCC------CC
Q 037386          106 PVVALSTGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPT------SR  179 (189)
Q Consensus       106 ~VVALstgw~~~~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~------~~  179 (189)
                      +|.+..   || ...||.+.+++++||+|.+..+|.=.               ..+-+++|..+|+.|...+      ..
T Consensus        49 ~igg~~---wn-s~~CGtCwkLtY~G~sI~vlaID~a~---------------~g~~FnIs~~Amn~LT~G~~a~~a~el  109 (136)
T 3sum_A           49 HFVAAP---EA-QTECGSCWKLRYKGNHAFVTVVDRVE---------------EANLFVGGTDLVKNLTTFNGAPEGYDW  109 (136)
T ss_dssp             SEEECC---BT-TBCTTCEEEEEETTEEEEEEEEECCC---------------STTEEEECHHHHHHHTCBTTBCHHHHH
T ss_pred             cccccc---cC-CCCCCceEEEEECCeEEEEEEEecCC---------------CcceEeehHHHHHHHhCCCccccceec
Confidence            466666   55 48999999999999999999999662               1123999999999997433      36


Q ss_pred             cEEEE-EEEe
Q 037386          180 GELDI-HWSD  188 (189)
Q Consensus       180 G~i~I-tWs~  188 (189)
                      |+|++ +|..
T Consensus       110 G~Vda~~~~q  119 (136)
T 3sum_A          110 GTAQLFSAYQ  119 (136)
T ss_dssp             SEEECSEEEE
T ss_pred             ceeeeeEEEE
Confidence            99998 8864

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=97.14  E-value=0.00062  Score=53.25  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             CCCCccEEEEEeCC----cEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCC--CCcEEEEEEEe
Q 037386          118 GSRCLNYINIYGNG----KSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPT--SRGELDIHWSD  188 (189)
Q Consensus       118 ~~~CGk~I~It~nG----kSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~--~~G~i~ItWs~  188 (189)
                      .+.||.+.+++++|    |+|.+..+|.=.                 ..+++|+++|+.|...+  ..|+|+++|..
T Consensus        58 S~~CGtC~~lty~g~~~~~si~vlaID~a~-----------------~Gfnis~~Amn~LT~G~a~~lG~V~~~~~~  117 (125)
T 3suk_A           58 SPACGNCYTISFTFQGVTRSINLVAIDHAG-----------------NGFNVAQAAMDELTNGNAVALGTIDVQSQQ  117 (125)
T ss_dssp             CTTTTCEEEEEEEETTEEEEEEEEEEEECS-----------------SSEEECHHHHHHHHTSCHHHHCEEEEEEEE
T ss_pred             CCCCCeeEEEEEcCCCcceEEEEEEEecCC-----------------CceeecHHHHHHhcCCcccccceEeEEEEE
Confidence            48999999999999    999999999762                 34999999999996433  36999999864

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=97.11  E-value=0.00077  Score=52.88  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=45.7

Q ss_pred             CCCCccEEEEEeCC-----cEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCC--CcEEEEEEEe
Q 037386          118 GSRCLNYINIYGNG-----KSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTS--RGELDIHWSD  188 (189)
Q Consensus       118 ~~~CGk~I~It~nG-----kSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~--~G~i~ItWs~  188 (189)
                      .+.||.+.+++++|     |+|.+..+|.=.                 ..+++|+++|+.|...+.  .|+|+++|..
T Consensus        57 s~~CGtC~~lty~g~~~~~~si~vlaID~a~-----------------~Gfnis~~Amn~LT~g~a~~lG~V~~~~~~  117 (127)
T 3suj_A           57 SPNCGSCYQLTYSSAHTTPKSIYMVAIDRSA-----------------EGFTASKQAMDDLTNKRAEELGTVNVDVRK  117 (127)
T ss_dssp             CTTTTCEEEEEECCSSSCCEEEEEEEEEECS-----------------SSEEECHHHHHHHHTSCHHHHSSEEEEEEE
T ss_pred             CCCCCceEEEEECCCCCcceEEEEEEEecCC-----------------CceeecHHHHHHhcCCccccceeEEEEEEE
Confidence            48999999999999     999999999762                 349999999999964433  6999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	99.54
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.24
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.41

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.54  E-value=1e-14  Score=114.14  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             EEEEeeeccCCCC---CCCCCCCCCc---CCCCCceEEeeccccCCCCCCccEEEEEe------CCcEEEEEEeecCCCC
Q 037386           78 TLTINSFEKNGEG---GGPSECDNKY---HSDDDPVVALSTGWYNKGSRCLNYINIYG------NGKSVKAKVVDECDST  145 (189)
Q Consensus        78 ~lt~t~f~~g~~g---Gg~gaCg~~~---~sd~d~VVALstgw~~~~~~CGk~I~It~------nGkSV~a~VVD~Cds~  145 (189)
                      ..+.|||......   .+.||||...   .....++|||++..|+++..||++++|+.      ++++|+++|+|.|+  
T Consensus        19 ~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~sv~V~vtd~c~--   96 (143)
T d1n10a2          19 DAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNE--   96 (143)
T ss_dssp             EEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECS--
T ss_pred             eeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCCCEEEEEEeccc--
Confidence            4567888532111   1247998432   12247999999999999999999999996      26899999999993  


Q ss_pred             CCCCCCCCCCCCCCCCeeecCHHHHHHhCCC------CCCcEEEEEEEe
Q 037386          146 VGCDSVHDYQPPCPNNIVDGSKAVWKALGVP------TSRGELDIHWSD  188 (189)
Q Consensus       146 ~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~------~~~G~i~ItWs~  188 (189)
                                .+|..+|||||+.+|++|+-+      .+.|+|+|+|+.
T Consensus        97 ----------~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRr  135 (143)
T d1n10a2          97 ----------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRR  135 (143)
T ss_dssp             ----------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEE
T ss_pred             ----------CCCCCccccCCHHHHhhhccccchhhheecCccceEEEE
Confidence                      356678999999999999932      257999999974

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.24  E-value=4.2e-12  Score=103.08  Aligned_cols=106  Identities=13%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             eEEEEeeeccCCCCCCCCCCCCCcCC--------CCCceEEeeccccCC------CCCCccEEEEEe-------------
Q 037386           77 ATLTINSFEKNGEGGGPSECDNKYHS--------DDDPVVALSTGWYNK------GSRCLNYINIYG-------------  129 (189)
Q Consensus        77 a~lt~t~f~~g~~gGg~gaCg~~~~s--------d~d~VVALstgw~~~------~~~CGk~I~It~-------------  129 (189)
                      -.-+.|+|...    .-||||.....        ...+++|||+.+|++      +..||++++|+-             
T Consensus        15 ~~A~aT~Ygd~----~~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~~~~~   90 (180)
T d1wc2a1          15 SCASTTNYHDS----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVR   90 (180)
T ss_dssp             EEEEEEEECCC----BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCC
T ss_pred             cccceEEeCCC----CCCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccCCCCC
Confidence            44567888632    23689943321        125799999999998      789999999982             


Q ss_pred             CCcEEEEEEeecCCC----CCCCCCCC---CCCCCCCCCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386          130 NGKSVKAKVVDECDS----TVGCDSVH---DYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWSD  188 (189)
Q Consensus       130 nGkSV~a~VVD~Cds----~~gCd~~~---~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~ItWs~  188 (189)
                      .|+||++||+|.||-    ..+|...-   .-..-+...|+|||+ +|.+++ ....|+|+|+|+.
T Consensus        91 ~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs~-af~~ia-~~~~G~v~V~yrr  154 (180)
T d1wc2a1          91 EGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLEN-GRSQVT-GMGWNNPETTWEV  154 (180)
T ss_dssp             TTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEEC-TTSTTG-GGTCSSEEEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceechH-HHHHHh-hhcCCcceeEEEE
Confidence            478999999999973    23453210   001112345999985 888887 7889999999974

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.41  E-value=1.7e-07  Score=71.02  Aligned_cols=56  Identities=20%  Similarity=0.475  Sum_probs=45.7

Q ss_pred             CCCCCccEEEEEe--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecC-HHHHHHhCCC---CCCcEEEEEEEe
Q 037386          117 KGSRCLNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGS-KAVWKALGVP---TSRGELDIHWSD  188 (189)
Q Consensus       117 ~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS-~avf~aLg~~---~~~G~i~ItWs~  188 (189)
                      +.+.|||+++||.  +|.+++++|||+|                .++.|||- +.||++|.-+   ...|.+.|...|
T Consensus        59 gq~sCGkclrvTN~atga~~~~RiVDqC----------------sngGlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~f  120 (125)
T d1bw3a_          59 GQAACGKCLRVTNPATGAQITARIVDQC----------------ANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF  120 (125)
T ss_dssp             SGGGTTCEEEEEETTTTEEEEEEEEECC----------------SSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEE
T ss_pred             CcccccceEEeeecccCcEEEEEEeecc----------------cCCCCccccHhhhheecCCCcccccccEEEEEEE
Confidence            3568999999995  9999999999999                45679999 7899999722   127788887766