Citrus Sinensis ID: 037388


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70
MVTACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
cccEEEEEEEccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcc
ccEEEEEEEcccccHHHHHHHHcHHHHHccccccccHHcccHHHHHHHHHHHHHHHHHcccccEEEEccc
mvtactkfevspdtypvVSRFLneeetkawglepydtEVAENLCIKALYAWLISNFLfhtgqhffcckfl
mvtactkfevspdtypvvSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
MVTACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
*****TKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKF*
***ACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
MVTACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
MVTACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVTACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHTGQHFFCCKFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query70 2.2.26 [Sep-21-2011]
Q9M2Y6 261 Uncharacterized protein A no no 0.528 0.141 0.594 2e-06
>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1 Back     alignment and function desciption
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 26/37 (70%)

Query: 8   FEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLC 44
             V PDT  VVS  L EEET+AWG+EPYD E A++ C
Sbjct: 95  LHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHC 131


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.138    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,902,304
Number of Sequences: 539616
Number of extensions: 764573
Number of successful extensions: 3537
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3535
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)



Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query70
359806606 257 uncharacterized protein LOC100796049 [Gl 0.528 0.143 0.648 4e-06
363806806 259 uncharacterized protein LOC100778341 [Gl 0.571 0.154 0.634 8e-06
18424995 258 uncharacterized protein [Arabidopsis tha 0.657 0.178 0.521 1e-05
297797611 258 hypothetical protein ARALYDRAFT_332797 [ 0.657 0.178 0.521 1e-05
21593192 258 unknown [Arabidopsis thaliana] 0.657 0.178 0.521 1e-05
9758568 219 unnamed protein product [Arabidopsis tha 0.657 0.210 0.521 1e-05
356552298 258 PREDICTED: uncharacterized protein At3g4 0.571 0.155 0.609 3e-05
147801370 256 hypothetical protein VITISV_037838 [Viti 0.528 0.144 0.594 3e-05
346466083 298 hypothetical protein [Amblyomma maculatu 0.528 0.124 0.594 4e-05
297819624 261 hypothetical protein ARALYDRAFT_485334 [ 0.528 0.141 0.594 7e-05
>gi|359806606|ref|NP_001241016.1| uncharacterized protein LOC100796049 [Glycine max] gi|255634636|gb|ACU17680.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 27/37 (72%)

Query: 8   FEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLC 44
             V PDT  VVS+ L EEET AWG+EPYDTE A+N C
Sbjct: 91  LHVGPDTCYVVSKLLKEEETDAWGIEPYDTEDADNNC 127




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806806|ref|NP_001242285.1| uncharacterized protein LOC100778341 [Glycine max] gi|255639151|gb|ACU19875.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18424995|ref|NP_569020.1| uncharacterized protein [Arabidopsis thaliana] gi|110737950|dbj|BAF00912.1| hypothetical protein [Arabidopsis thaliana] gi|194579019|gb|ACF75543.1| At5g65810 [Arabidopsis thaliana] gi|332010727|gb|AED98110.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297797611|ref|XP_002866690.1| hypothetical protein ARALYDRAFT_332797 [Arabidopsis lyrata subsp. lyrata] gi|297312525|gb|EFH42949.1| hypothetical protein ARALYDRAFT_332797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21593192|gb|AAM65141.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9758568|dbj|BAB09049.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356552298|ref|XP_003544505.1| PREDICTED: uncharacterized protein At3g49720-like [Glycine max] Back     alignment and taxonomy information
>gi|147801370|emb|CAN74732.1| hypothetical protein VITISV_037838 [Vitis vinifera] Back     alignment and taxonomy information
>gi|346466083|gb|AEO32886.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|297819624|ref|XP_002877695.1| hypothetical protein ARALYDRAFT_485334 [Arabidopsis lyrata subsp. lyrata] gi|297323533|gb|EFH53954.1| hypothetical protein ARALYDRAFT_485334 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query70
TAIR|locus:2156208 258 CGR3 "AT5G65810" [Arabidopsis 0.628 0.170 0.545 1.1e-07
TAIR|locus:2097380 261 AT3G49720 "AT3G49720" [Arabido 0.5 0.134 0.628 1.2e-06
TAIR|locus:2156208 CGR3 "AT5G65810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query:    10 VSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLI 53
             V P+T  VVS  LNEEET+AWG+EPYD E A++ C   L+  L+
Sbjct:    94 VGPETCSVVSSLLNEEETEAWGVEPYDVEDADSNCKSLLHKGLV 137




GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0000139 "Golgi membrane" evidence=IDA
GO:0010394 "homogalacturonan metabolic process" evidence=IMP
GO:0045488 "pectin metabolic process" evidence=IMP
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2097380 AT3G49720 "AT3G49720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

No confident hit detected by STRING


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 70
PF07021 193 MetW: Methionine biosynthesis protein MetW; InterP 90.7
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 84.42
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins Back     alignment and domain information
Probab=90.70  E-value=0.096  Score=38.13  Aligned_cols=56  Identities=9%  Similarity=0.106  Sum_probs=43.7

Q ss_pred             eeeeeeCCCchhHhHhhhcccccccccccccchhhHHHHHHHHHHHHH-HHHhHhhcCccee
Q 037388            5 CTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWL-ISNFLFHTGQHFF   65 (70)
Q Consensus         5 ~kvLHVGPdTC~VVSkLLkEeeTeAWGVEPYd~edad~~CksLvrkgl-vr~~~~h~g~~~~   65 (70)
                      .+||.+|-+.-...+.|.++-..++.|||-.     +.+-.+.++||+ |--.|.-.|+..|
T Consensus        15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f   71 (193)
T PF07021_consen   15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADF   71 (193)
T ss_pred             CEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhC
Confidence            5899999999999999999999999999843     344667788887 5555655666544



Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00