Citrus Sinensis ID: 037424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTLL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccEEEEcEEEEEEEEEEcccccccHHHHHHHHHHHccccccccccccEEEEEcccccEEEccEEEccccccccccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccccHHHHHHHHHHccccccHHccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccEEEEEHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEcccccEEccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
maqmigtdEIESVRIELAEIGRSLKSsfrlqtssfrsssaissrredtDVENALQWAeierlptydrlktslfdvnsnkdlvdnqgkqainvtKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKcevvhgkplptlwNSFKGMIsvlpklsgykslEAKINILNRVSgilkpgsvnladcltflhplDVFQVLFLLVLWCLHAFTLL
Flexible Loop (DISEMBL)
maqmigtdeiesVRIELAEIGRslkssfrlqtssfrsssaissrredtdvenalqwaeierlptydrLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKrmdkvgvklptievryknlWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTLL
Low Complexity Region (SEG)
MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTssfrsssaissrrEDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPldvfqvlfllvlwclhafTLL
Disordered region (IsUnstruct)
****************************************************ALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTL*
Disordered Region (DISOPRED)
*****************************************************LQWAEIERLPTYDRLKTS******************************VFIEKLIKHIEHDNLQLLRKIRK**********TIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSG********NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTLL
Disordered Region (DISEMBL)
MAQMIGTDEIESVRIELAEIGRSLKSSFRL********************ENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTLL
Disordered Region (DISPRO)
************************************************DVENALQWAEIERLPTYDRLKTSLFDVNSNKD**DNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHAFTLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q5W274	1447	Pleiotropic drug resistan	N/A	no	0.861	0.137	0.661	3e-71
Q9LFH0	1450	ABC transporter G family	yes	no	0.861	0.137	0.601	3e-60
Q9ZUT8	1413	ABC transporter G family	no	no	0.649	0.106	0.594	6e-46
Q8GZ52	1400	ABC transporter G family	no	no	0.632	0.104	0.529	3e-38
Q7PC83	1397	ABC transporter G family	no	no	0.584	0.096	0.533	7e-36
Q7PC81	1390	ABC transporter G family	no	no	0.593	0.098	0.476	2e-31
Q7PC82	1392	ABC transporter G family	no	no	0.636	0.105	0.452	4e-31
Q7PC86	1442	ABC transporter G family	no	no	0.770	0.123	0.410	5e-27
Q9XIE2	1469	ABC transporter G family	no	no	0.688	0.108	0.414	1e-26
Q8GU89	1450	Pleiotropic drug resistan	no	no	0.753	0.12	0.373	1e-24

>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1

 Score =  268 bits (684), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 167/204 (81%), Gaps = 5/204 (2%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRRED--TDVENALQWAE 58
           MAQ++G+DEIES R++LAEIGRSL+SSFR Q+SSFRS+SA+S+ ++D   D EN L WA 
Sbjct: 1   MAQLVGSDEIESFRMDLAEIGRSLRSSFRGQSSSFRSNSALSASQKDDAVDEENMLAWAA 60

Query: 59  IERLPTYDRLKTSLFD-VNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQ 117
           IERLPT+DRL++SLF+ +N N   V    K+  +VTKLGALERHVFIEK+IKHIEHDNLQ
Sbjct: 61  IERLPTFDRLRSSLFEEINGNDANVKR--KRVTDVTKLGALERHVFIEKMIKHIEHDNLQ 118

Query: 118 LLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGY 177
           LL KIRKR+DKVGV+LPT+EVRYKNL +EA+CE+VHGKPLPTLWNS K +   L +L G 
Sbjct: 119 LLHKIRKRIDKVGVELPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSITMNLARLPGL 178

Query: 178 KSLEAKINILNRVSGILKPGSVNL 201
           +S  AKI ILN VSG++KPG + L
Sbjct: 179 QSELAKIKILNDVSGVIKPGRMTL 202

May be a general defense protein.
Nicotiana tabacum (taxid: 4097)

>sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1

 Score =  231 bits (589), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 164/206 (79%), Gaps = 7/206 (3%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDV-----ENALQ 55
           MA M+G D+IES+R+ELAEIGRS++SSFR  TSSFRSSS+I     D DV     E ALQ
Sbjct: 1   MAHMVGADDIESLRVELAEIGRSIRSSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQ 60

Query: 56  WAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDN 115
           WAEIERLPT  R++++L D     + +  +G++ ++VTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61  WAEIERLPTVKRMRSTLLD--DGDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDN 118

Query: 116 LQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
           L+LL+KIR+R+D+VG++LPTIEVRY++L V A+CEVV GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLT 178

Query: 176 GYKSLEAKINILNRVSGILKPGSVNL 201
           G K+ EAKINI+N V+GI+KPG + L
Sbjct: 179 GAKTHEAKINIINDVNGIIKPGRLTL 204

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 118/153 (77%), Gaps = 3/153 (1%)

Query: 49  DVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLI 108
           + E+ALQWAEI+RLPT+ RL++SL D          +GK+ ++VTKLGA+ERH+ IEKLI
Sbjct: 20  EAEHALQWAEIQRLPTFKRLRSSLVDKYGEGT---EKGKKVVDVTKLGAMERHLMIEKLI 76

Query: 109 KHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMI 168
           KHIE+DNL+LL+KIR+RM++VGV+ P+IEVRY++L VEA CEVV GK LPTLWNS K + 
Sbjct: 77  KHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVF 136

Query: 169 SVLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
             L KLSG ++ EA I IL  VSGI+ PG + L
Sbjct: 137 LDLLKLSGVRTNEANIKILTDVSGIISPGRLTL 169

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 9/155 (5%)

Query: 47  DTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEK 106
           D + E  LQWA +ERLPT+ R+ T+L      +D V  +G+  I+VT+L   ER + IE 
Sbjct: 26  DDEEELRLQWATVERLPTFKRVTTALL----ARDEVSGKGR-VIDVTRLEGAERRLLIEM 80

Query: 107 LIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKG 166
           L+K IE DNL+LLRKIRKR+DKVG++LPT+EVR+ NL VEA+C+V+HGKP+PTLWN+ KG
Sbjct: 81  LVKQIEDDNLRLLRKIRKRIDKVGIELPTVEVRFNNLSVEAECQVIHGKPIPTLWNTIKG 140

Query: 167 MISVLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
           ++S    +   K  E KI IL  VSGI++PG + L
Sbjct: 141 LLSEF--ICSKK--ETKIGILKGVSGIVRPGRMTL 171

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 13/148 (8%)

Query: 55  QWAEIERLPTYDRLKTSLFDV-NSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEH 113
           QWA +ERLPT+ R+ T+L    + + D++D        VTKL   ER + IEKL+K IE 
Sbjct: 33  QWATVERLPTFKRVTTALLHTGDDSSDIID--------VTKLEDAERRLLIEKLVKQIEA 84

Query: 114 DNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPK 173
           DNL+LLRKIRKR+D+VG++LPT+EVR+ +L VEA+C+VVHGKP+PTLWN+ KG +S   K
Sbjct: 85  DNLRLLRKIRKRIDEVGIELPTVEVRFNDLSVEAECQVVHGKPIPTLWNTIKGSLS---K 141

Query: 174 LSGYKSLEAKINILNRVSGILKPGSVNL 201
               K  E KI IL  VSGI++PG + L
Sbjct: 142 FVCSKK-ETKIGILKGVSGIVRPGRMTL 168

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 100/151 (66%), Gaps = 14/151 (9%)

Query: 55  QWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQA----INVTKLGALERHVFIEKLIKH 110
           QW  IER PT  R+ T+LF         D QGK++    ++V+KL  L+R +FI++LI+H
Sbjct: 28  QWVAIERSPTCKRITTALFCKR------DEQGKRSQRRVMDVSKLEDLDRRLFIDELIRH 81

Query: 111 IEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISV 170
           +E DN  LL+KIR R D+VG+ LP IEVR+ +L+VEA+CEVVHGKP+PTLWN+    +S 
Sbjct: 82  VEDDNRVLLQKIRTRTDEVGIDLPKIEVRFSDLFVEAECEVVHGKPIPTLWNAIASKLSR 141

Query: 171 LPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
                 +   E KI+IL  VSGI++P  + L
Sbjct: 142 FT----FSKQEDKISILKGVSGIIRPKRMTL 168

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 105/157 (66%), Gaps = 10/157 (6%)

Query: 47  DTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEK 106
           D D +   QW  IER PT++R+ T+LF     K       ++ ++V+KL  L+R +FI+ 
Sbjct: 22  DDDDQLRSQWVAIERSPTFERITTALFCKRDEKG--KKSQRRVMDVSKLDDLDRRLFIDD 79

Query: 107 LIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKG 166
           LI+H+E+DN  LL+KIRKR+D+VG+ LP IE R+ +L+VEA+CEVV+GKP+PTLWN    
Sbjct: 80  LIRHVENDNHVLLQKIRKRIDEVGIDLPKIEARFSDLFVEAECEVVYGKPIPTLWN---- 135

Query: 167 MISVLPKLSGY--KSLEAKINILNRVSGILKPGSVNL 201
             ++  KLS +   +   KI+IL  VSGI++P  + L
Sbjct: 136 --AISSKLSRFMCSNQAKKISILKGVSGIIRPKRMTL 170

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 7/185 (3%)

Query: 20  IGRSLKSSFRLQTSSFRSSSA-ISSRREDTDVENALQWAEIERLPTYDRLKTSLFDVNSN 78
           I RS+  + R     F +SS    S  ED   E AL+WA IE+LPTY+RL+TSL      
Sbjct: 19  ISRSVSKASRNMEDIFNTSSRRTKSVNED---EEALKWASIEKLPTYNRLRTSLMPELGE 75

Query: 79  KDLVDNQG-KQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIE 137
            D+  NQ   +A++VTKL   ER  FI+ + K  E DN ++L K+R R+D+VG++LPT+E
Sbjct: 76  DDVYGNQILNKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVE 135

Query: 138 VRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK-SLEAKINILNRVSGILKP 196
           VRY +L V+A C     + LP+L N+ + M      + G + + +A++ IL  VSGI+KP
Sbjct: 136 VRYDHLTVKADC-YTGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKP 194

Query: 197 GSVNL 201
             + L
Sbjct: 195 SRMTL 199

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 5/164 (3%)

Query: 42  SSRREDT--DVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQ-GKQAINVTKLGAL 98
            SRR  +  D E AL+WA IE+LPTY RL+T+L +     D+  NQ   + ++VTKL   
Sbjct: 39  GSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGE 98

Query: 99  ERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLP 158
           +R  FI+ + K  E DN ++L K+R R+D+VG+KLPT+EVRY++L ++A C     + LP
Sbjct: 99  DRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADC-YTGNRSLP 157

Query: 159 TLWNSFKGMI-SVLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
           TL N  + M  S L  +    + +A++ IL  +SG++KPG + L
Sbjct: 158 TLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTL 201

Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 108/182 (59%), Gaps = 8/182 (4%)

Query: 26  SSFRLQTSSFRSSSAISSR-----REDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKD 80
           +S R + S +RS   + SR     +++ D E AL+WA +ERLPTYDR++  +  V+S   
Sbjct: 9   ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68

Query: 81  LVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRY 140
               + K  ++V +LGA E    IE+L++  + D+ + L K+R+RMD+VG+  PTIEVR+
Sbjct: 69  GAGGE-KVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRF 127

Query: 141 KNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPK-LSGYKSLEAKINILNRVSGILKPGSV 199
           +NL VEA   V + + LPTL NS    +  +   L    + +  + +L+ VSGI+KP  +
Sbjct: 128 ENLEVEADVHVGN-RGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRM 186

Query: 200 NL 201
            L
Sbjct: 187 TL 188

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
75321780	1447	RecName: Full=Pleiotropic drug resistanc	0.861	0.137	0.661	2e-69
346306027	1172	ABCG subfamily transporter protein [Sola	0.861	0.169	0.632	7e-66
147780242	1417	hypothetical protein VITISV_037751 [Viti	0.861	0.140	0.646	9e-65
225450466	1448	PREDICTED: pleiotropic drug resistance p	0.861	0.137	0.646	1e-64
224109722	1406	predicted protein [Populus trichocarpa]	0.857	0.140	0.587	8e-60
356565445	1452	PREDICTED: pleiotropic drug resistance p	0.870	0.138	0.558	1e-58
15231821	1450	ABC transporter G family member 37 [Arab	0.861	0.137	0.601	2e-58
297816648	1450	ATPDR9/PDR9 [Arabidopsis lyrata subsp. l	0.861	0.137	0.601	5e-58
224099040	1476	predicted protein [Populus trichocarpa]	0.961	0.150	0.544	3e-55
255556558	1393	ATP-binding cassette transporter, putati	0.839	0.139	0.582	7e-54

>gi|75321780|sp|Q5W274.1|PDR3_TOBAC RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3 gi|55056942|emb|CAH39853.1| PDR-like ABC transporter [Nicotiana tabacum]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 167/204 (81%), Gaps = 5/204 (2%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRRED--TDVENALQWAE 58
           MAQ++G+DEIES R++LAEIGRSL+SSFR Q+SSFRS+SA+S+ ++D   D EN L WA 
Sbjct: 1   MAQLVGSDEIESFRMDLAEIGRSLRSSFRGQSSSFRSNSALSASQKDDAVDEENMLAWAA 60

Query: 59  IERLPTYDRLKTSLFD-VNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQ 117
           IERLPT+DRL++SLF+ +N N   V    K+  +VTKLGALERHVFIEK+IKHIEHDNLQ
Sbjct: 61  IERLPTFDRLRSSLFEEINGNDANVKR--KRVTDVTKLGALERHVFIEKMIKHIEHDNLQ 118

Query: 118 LLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGY 177
           LL KIRKR+DKVGV+LPT+EVRYKNL +EA+CE+VHGKPLPTLWNS K +   L +L G 
Sbjct: 119 LLHKIRKRIDKVGVELPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSITMNLARLPGL 178

Query: 178 KSLEAKINILNRVSGILKPGSVNL 201
           +S  AKI ILN VSG++KPG + L
Sbjct: 179 QSELAKIKILNDVSGVIKPGRMTL 202

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346306027|gb|AEO22188.1| ABCG subfamily transporter protein [Solanum tuberosum]

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 129/204 (63%), Positives = 164/204 (80%), Gaps = 5/204 (2%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRRED--TDVENALQWAE 58
           MAQ++ +D+IES+R++L+EIGRSL+SSFR QTS  RS+SA+S+  +D   D EN L WA 
Sbjct: 1   MAQLVSSDDIESIRMDLSEIGRSLRSSFRRQTSILRSNSALSASEKDDVVDEENMLAWAA 60

Query: 59  IERLPTYDRLKTSLFD-VNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQ 117
           IERLPTYDRL++S+F+ VN N+  V  + K+  +VTKL  +ERHVFIEK+IKHIEHDNLQ
Sbjct: 61  IERLPTYDRLRSSVFEEVNGNEANV--KTKRVTDVTKLRPVERHVFIEKMIKHIEHDNLQ 118

Query: 118 LLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGY 177
           LL KIRKR+DKVGV+LPT+EVRYKNL +EA+CE+VHGKPLPTLWNS K  I  L +L G 
Sbjct: 119 LLHKIRKRIDKVGVELPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSTIMNLARLPGL 178

Query: 178 KSLEAKINILNRVSGILKPGSVNL 201
           +S  AKI I+N VSG++KPG + L
Sbjct: 179 QSEMAKIKIINDVSGVIKPGRMTL 202

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera]

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 160/201 (79%), Gaps = 2/201 (0%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDVENALQWAEIE 60
           MAQ++GTDEIES RIEL EIGRSL+SSFR  TSS    S+ +S ++D   EN LQW EIE
Sbjct: 1   MAQLVGTDEIESFRIELTEIGRSLRSSFRRHTSS--FRSSSASLKDDAVEENDLQWTEIE 58

Query: 61  RLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLR 120
           RLPT++RL++SLFD   +  +VD +GK+ ++VTK+GA ER +FIEKLIKH E+DNL+LL+
Sbjct: 59  RLPTFERLRSSLFDEYDDGSVVDGEGKRVVDVTKIGAPERRMFIEKLIKHTENDNLRLLQ 118

Query: 121 KIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSL 180
           KIRKR DKVGVKLPT+EVRYKNL VEA+CEVVHGKPLPTLWNS K + S   KL G  S 
Sbjct: 119 KIRKRTDKVGVKLPTVEVRYKNLRVEAECEVVHGKPLPTLWNSLKSIPSDFTKLLGLGSH 178

Query: 181 EAKINILNRVSGILKPGSVNL 201
           EA I+I+N VSG++KPG + L
Sbjct: 179 EAHISIINGVSGVIKPGRMTL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 162/201 (80%), Gaps = 2/201 (0%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDVENALQWAEIE 60
           MAQ++GTDEIES RIELAEIGRSL+SSFR  TSS    S+ +S ++D   E+ LQW +IE
Sbjct: 1   MAQLVGTDEIESFRIELAEIGRSLRSSFRRHTSS--FRSSSASLKDDAVEEHDLQWTDIE 58

Query: 61  RLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLR 120
           RLPT++RL++SLFD   +   VD +GK+ ++VTK+GA ER +FIEKLIKHIE+DNL+LL+
Sbjct: 59  RLPTFERLRSSLFDEYDDGSRVDGEGKRVVDVTKIGAPERRMFIEKLIKHIENDNLRLLQ 118

Query: 121 KIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSL 180
           KIRKR+DKVGVKLPT+EVRYKNL VEA+CEVVHGKPLPTLWNS K + S   KL G  S 
Sbjct: 119 KIRKRIDKVGVKLPTVEVRYKNLRVEAECEVVHGKPLPTLWNSLKSIPSDFTKLLGLGSH 178

Query: 181 EAKINILNRVSGILKPGSVNL 201
           EA I+I+N VSG++KPG + L
Sbjct: 179 EAHISIINGVSGVIKPGRMTL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109722|ref|XP_002333208.1| predicted protein [Populus trichocarpa] gi|222835114|gb|EEE73549.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 121/206 (58%), Positives = 154/206 (74%), Gaps = 8/206 (3%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRR-EDTDVENALQWAEI 59
           MAQ+ G DEIES RIELAEIGRS+K+SFR   SSFRS S + S    D D E+  QW ++
Sbjct: 1   MAQLAGPDEIESFRIELAEIGRSIKTSFRSHVSSFRSVSTVKSEHGRDADDEDVSQWVDV 60

Query: 60  ERLPTYDRLKTSLFD----VNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDN 115
           ERLPT++R+ T+LF+       N D+    GK+ INV KLGA ERH+FIEKLIKHIE+DN
Sbjct: 61  ERLPTFERITTALFEEQDGTAGNGDV--KGGKRIINVAKLGAQERHMFIEKLIKHIENDN 118

Query: 116 LQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
           L+LL K+RKR+DKVGV+LPT+EVRYKNL VE++CE+V GKPLPTLWN+ K ++S +  LS
Sbjct: 119 LRLLHKLRKRIDKVGVQLPTVEVRYKNLCVESECEIVQGKPLPTLWNTAKSILSGIANLS 178

Query: 176 GYKSLEAKINILNRVSGILKPGSVNL 201
             K    KI+I+  VSG++KPG + L
Sbjct: 179 CSKQ-RTKISIIKDVSGVIKPGRMTL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565445|ref|XP_003550950.1| PREDICTED: pleiotropic drug resistance protein 3-like [Glycine max]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/204 (55%), Positives = 156/204 (76%), Gaps = 3/204 (1%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTD--VENALQWAE 58
           MAQ+ G DEIES+R ELAEIGRS++SSFR   SSF+S S+I+  +++ D     ALQWAE
Sbjct: 1   MAQLAGADEIESLRNELAEIGRSIRSSFRSHASSFQSVSSINPVQQEVDNNAGEALQWAE 60

Query: 59  IERLPTYDRLKTSLFDVNSNKDLVDN-QGKQAINVTKLGALERHVFIEKLIKHIEHDNLQ 117
           I+RLPT++R+ ++LFDV    +  +  +GKQ ++V+KLGA ERH+FIEKLIKHIE+DNL+
Sbjct: 61  IQRLPTFERITSALFDVYDGMETGEKVEGKQVVDVSKLGAQERHMFIEKLIKHIENDNLR 120

Query: 118 LLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGY 177
           LL+K R R+DKVG+ LPT+E+RY+NL VEA+C++V GKP+PTLWN+ K  I    KL   
Sbjct: 121 LLQKFRNRIDKVGINLPTVELRYQNLCVEAECKIVQGKPIPTLWNTLKEWIFDTTKLPVL 180

Query: 178 KSLEAKINILNRVSGILKPGSVNL 201
           KS  +KI+I+   +GI+KPG + L
Sbjct: 181 KSQNSKISIIKSANGIIKPGRMTL 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231821|ref|NP_190916.1| ABC transporter G family member 37 [Arabidopsis thaliana] gi|75334941|sp|Q9LFH0.1|AB37G_ARATH RecName: Full=ABC transporter G family member 37; Short=ABC transporter ABCG.37; Short=AtABCG37; AltName: Full=Probable pleiotropic drug resistance protein 9 gi|6729499|emb|CAB67655.1| ABC transporter-like protein [Arabidopsis thaliana] gi|28144337|tpg|DAA00877.1| TPA_exp: PDR9 ABC transporter [Arabidopsis thaliana] gi|332645574|gb|AEE79095.1| ABC transporter G family member 37 [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 164/206 (79%), Gaps = 7/206 (3%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDV-----ENALQ 55
           MA M+G D+IES+R+ELAEIGRS++SSFR  TSSFRSSS+I     D DV     E ALQ
Sbjct: 1   MAHMVGADDIESLRVELAEIGRSIRSSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQ 60

Query: 56  WAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDN 115
           WAEIERLPT  R++++L D     + +  +G++ ++VTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61  WAEIERLPTVKRMRSTLLD--DGDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDN 118

Query: 116 LQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
           L+LL+KIR+R+D+VG++LPTIEVRY++L V A+CEVV GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLT 178

Query: 176 GYKSLEAKINILNRVSGILKPGSVNL 201
           G K+ EAKINI+N V+GI+KPG + L
Sbjct: 179 GAKTHEAKINIINDVNGIIKPGRLTL 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816648|ref|XP_002876207.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] gi|297322045|gb|EFH52466.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 164/206 (79%), Gaps = 7/206 (3%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDV-----ENALQ 55
           MA M+G DEIES+R+ELAEIGRS++SSFR  TSSFRSSS+      D DV     E ALQ
Sbjct: 1   MAHMVGADEIESLRVELAEIGRSIRSSFRRHTSSFRSSSSRYELENDGDVIDHDAEYALQ 60

Query: 56  WAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDN 115
           WAEIERLPT  R++++L D     + +  +G++ ++VTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61  WAEIERLPTVKRMRSTLLD--DGDESMSEKGRRVVDVTKLGAMERHLMIEKLIKHIENDN 118

Query: 116 LQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
           L+LL+KIRKR+D+VG++LPTIEVRY++L VEA+CE+V GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRKRIDRVGMELPTIEVRYESLKVEAECEIVEGKALPTLWNTAKRVLSELVKLT 178

Query: 176 GYKSLEAKINILNRVSGILKPGSVNL 201
           G K+ EAKINI+N V+G++KPG + L
Sbjct: 179 GAKTHEAKINIINDVNGVIKPGRLTL 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa] gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 159/226 (70%), Gaps = 4/226 (1%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRR-EDTDVENALQWAEI 59
           MAQ+ G+DEIES RIELAEI R++++SFR Q  SF S S  SS    D D E+ LQWA +
Sbjct: 1   MAQLAGSDEIESFRIELAEIERNIRTSFRSQVPSFHSVSNGSSEHIRDADDEDMLQWAAV 60

Query: 60  ERLPTYDRLKTSLFD-VNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQL 118
           ERLPT++R+ T+LF+  +      D +GK  +NV+KLGA ERHVFIEKLIKHIE+DNL+L
Sbjct: 61  ERLPTFERITTALFEEQDCTAANGDAKGKTIVNVSKLGAQERHVFIEKLIKHIENDNLRL 120

Query: 119 LRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK 178
           LR++++R+DKVGVK PT+EVRY+NL VEA+CE+VHGKPLPTLWN+ K ++S    LS  K
Sbjct: 121 LRRLKQRIDKVGVKFPTVEVRYRNLCVEAECELVHGKPLPTLWNTAKSLLSGFASLSCSK 180

Query: 179 SLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC 224
               K  IL    GILKPG    +  L FL  +++ + L    L C
Sbjct: 181 R-RTKAGILKDAGGILKPGRNIYSQLLHFL-AVEILKFLISTYLCC 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556558|ref|XP_002519313.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223541628|gb|EEF43177.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 117/201 (58%), Positives = 155/201 (77%), Gaps = 7/201 (3%)

Query: 1   MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTSSFRSSSAISSRREDTDVENALQWAEIE 60
           MAQ++G DEIES RIELAE+GRS++SSFR   SSFRS   ISS  ED D +  LQWA +E
Sbjct: 1   MAQLVGPDEIESFRIELAELGRSIRSSFRSHVSSFRS---ISSVAEDNDEQTQLQWAAVE 57

Query: 61  RLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLR 120
           RLPT  R+ T+LF+     D  D++GK+ ++V KLGA ER +FIEKLIKH++HDNL+LL+
Sbjct: 58  RLPTLRRITTALFE---ETDGSDSKGKRIVDVAKLGAQERQMFIEKLIKHVDHDNLRLLK 114

Query: 121 KIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSL 180
           K+RKR+D+VGV+LPT+EVRY+NL VEA+C+VVHG+PLPTLWN+ + ++S    L  +   
Sbjct: 115 KLRKRIDRVGVQLPTVEVRYRNLCVEAECKVVHGRPLPTLWNTARSVLSEFITLP-WSRQ 173

Query: 181 EAKINILNRVSGILKPGSVNL 201
           EAKI+IL  V+GI+KP  + L
Sbjct: 174 EAKISILKDVNGIIKPRRITL 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2084081	1450	ABCG37 "ATP-binding cassette G	0.861	0.137	0.563	1.7e-54
TAIR|locus:2049867	1413	ABCG33 "ATP-binding cassette G	0.649	0.106	0.594	1.4e-41
TAIR|locus:2037703	1442	ABCG35 "ATP-binding cassette G	0.770	0.123	0.394	1.8e-25
TAIR|locus:2025931	1469	PEN3 "PENETRATION 3" [Arabidop	0.658	0.103	0.419	2.3e-25
TAIR|locus:2094952	1416	ABCG29 "ATP-binding cassette G	0.619	0.100	0.411	2.7e-22
TAIR|locus:2044893	1453	ABCG34 "ATP-binding cassette G	0.645	0.102	0.398	1.6e-21
TAIR|locus:2019693	1454	ABCG39 "ATP-binding cassette G	0.844	0.134	0.345	3.8e-20
TAIR|locus:2196593	1423	ABCG40 "ATP-binding cassette G	0.645	0.104	0.384	3.4e-19
TAIR|locus:2039523	1420	ABCG32 "ATP-binding cassette G	0.640	0.104	0.324	9.4e-17
TAIR|locus:2045683	1426	ABCG31 "ATP-binding cassette G	0.645	0.104	0.348	1.8e-15

TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 1.7e-54, P = 1.7e-54
 Identities = 116/206 (56%), Positives = 158/206 (76%)

Query:     1 MAQMIGTDEIESVRIELAEIGRSLKSSFRLQTXXXXXXXXXXXXXEDTDV-----ENALQ 55
             MA M+G D+IES+R+ELAEIGRS++SSFR  T              D DV     E ALQ
Sbjct:     1 MAHMVGADDIESLRVELAEIGRSIRSSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQ 60

Query:    56 WAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDN 115
             WAEIERLPT  R++++L D + ++ + + +G++ ++VTKLGA+ERH+ IEKLIKHIE+DN
Sbjct:    61 WAEIERLPTVKRMRSTLLD-DGDESMTE-KGRRVVDVTKLGAVERHLMIEKLIKHIENDN 118

Query:   116 LQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
             L+LL+KIR+R+D+VG++LPTIEVRY++L V A+CEVV GK LPTLWN+ K ++S L KL+
Sbjct:   119 LKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLT 178

Query:   176 GYKSLEAKINILNRVSGILKPGSVNL 201
             G K+ EAKINI+N V+GI+KPG + L
Sbjct:   179 GAKTHEAKINIINDVNGIIKPGRLTL 204

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0009926 "auxin polar transport" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 91/153 (59%), Positives = 118/153 (77%)

Query:    49 DVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLI 108
             + E+ALQWAEI+RLPT+ RL++SL D          +GK+ ++VTKLGA+ERH+ IEKLI
Sbjct:    20 EAEHALQWAEIQRLPTFKRLRSSLVDKYGEGT---EKGKKVVDVTKLGAMERHLMIEKLI 76

Query:   109 KHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMI 168
             KHIE+DNL+LL+KIR+RM++VGV+ P+IEVRY++L VEA CEVV GK LPTLWNS K + 
Sbjct:    77 KHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVF 136

Query:   169 SVLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
               L KLSG ++ EA I IL  VSGI+ PG + L
Sbjct:   137 LDLLKLSGVRTNEANIKILTDVSGIISPGRLTL 169

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 73/185 (39%), Positives = 109/185 (58%)

Query:    20 IGRSL-KSSFRLQTXXXXXXXXXXXXXEDTDVENALQWAEIERLPTYDRLKTSLFDVNSN 78
             I RS+ K+S  ++              ED   E AL+WA IE+LPTY+RL+TSL      
Sbjct:    19 ISRSVSKASRNMEDIFNTSSRRTKSVNED---EEALKWASIEKLPTYNRLRTSLMPELGE 75

Query:    79 KDLVDNQG-KQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIE 137
              D+  NQ   +A++VTKL   ER  FI+ + K  E DN ++L K+R R+D+VG++LPT+E
Sbjct:    76 DDVYGNQILNKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVE 135

Query:   138 VRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK-SLEAKINILNRVSGILKP 196
             VRY +L V+A C     + LP+L N+ + M      + G + + +A++ IL  VSGI+KP
Sbjct:   136 VRYDHLTVKADC-YTGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKP 194

Query:   197 GSVNL 201
               + L
Sbjct:   195 SRMTL 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 65/155 (41%), Positives = 99/155 (63%)

Query:    49 DVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQ-GKQAINVTKLGALERHVFIEKL 107
             D E AL+WA IE+LPTY RL+T+L +     D+  NQ   + ++VTKL   +R  FI+ +
Sbjct:    48 DDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGEDRQKFIDMV 107

Query:   108 IKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGM 167
              K  E DN ++L K+R R+D+VG+KLPT+EVRY++L ++A C     + LPTL N  + M
Sbjct:   108 FKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADC-YTGNRSLPTLLNVVRNM 166

Query:   168 -ISVLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
               S L  +    + +A++ IL  +SG++KPG + L
Sbjct:   167 GESALGMIGIQFAKKAQLTILKDISGVIKPGRMTL 201

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA;IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0015691 "cadmium ion transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 65/158 (41%), Positives = 99/158 (62%)

Query:    46 EDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIE 105
             +D D E AL+WA +E+LPT+ RL+T++  ++ ++DLVD        VTKLG  +R  FI+
Sbjct:    33 DDHD-EEALKWAALEKLPTFARLRTTI--IHPHEDLVD--------VTKLGVDDRQKFID 81

Query:   106 KLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGK-PLPTLWNSF 164
              + K  E DN + L+K R R+D+V +KLPT+EVR++ + +EA C +  GK  LPTL N+ 
Sbjct:    82 SIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHI--GKRALPTLPNAA 139

Query:   165 KGMISVLPKLSGYKSLEA-KINILNRVSGILKPGSVNL 201
               +     +L G+   +  K+ IL  VSGI+KP  + L
Sbjct:   140 LNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTL 177

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015850 "organic hydroxy compound transport" evidence=IDA

GO:1901140 "p-coumaryl alcohol transport" evidence=IDA

GO:1901141 "regulation of lignin biosynthetic process" evidence=IMP

TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 63/158 (39%), Positives = 96/158 (60%)

Query:    46 EDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQ-GKQAINVTKLGALERHVFI 104
             E+ DVE  L+WA +ERLPTYDRL+  +      + +V+ + G + ++VT L   E+   +
Sbjct:    53 EEDDVE--LRWAALERLPTYDRLRKGMLP----QTMVNGKIGLEDVDVTNLAPKEKKHLM 106

Query:   105 EKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSF 164
             E ++K +E DN + LR++R+R D+VG+++P IEVRY+NL VE        + LPTL+N  
Sbjct:   107 EMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSA-SRALPTLFNVT 165

Query:   165 KGMI-SVLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
                I S+L       S + KI IL  +SGI+KP  + L
Sbjct:   166 LNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTL 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 73/211 (34%), Positives = 111/211 (52%)

Query:     1 MAQMIGTDEIE----SVRIELAEIG-RSL---KSSFR-LQTXXXXXXXXXXXXXEDTDVE 51
             MA M+G DE      S R+ LA    RSL     SFR +               E+ D+E
Sbjct:     1 MAAMLGRDEDPVGALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME 60

Query:    52 NALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHI 111
               L+WA IERLPT+DRL+  +    S    ++ +    I++T+L   ++   +E ++  +
Sbjct:    61 --LRWAAIERLPTFDRLRKGMLPQTSANGKIELED---IDLTRLEPKDKKHLMEMILSFV 115

Query:   112 EHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWN-SFKGMISV 170
             E DN + LR +R+R D+VG+++P IEVRY+N+ VE        + LPTL+N +   + S+
Sbjct:   116 EEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSA-SRALPTLFNVTLNTLESI 174

Query:   171 LPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
             L       S   KI IL  +SGI+KP  + L
Sbjct:   175 LGFFHLLPSKRKKIQILKDISGIVKPSRMTL 205

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS;IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 3.4e-19, P = 3.4e-19
 Identities = 60/156 (38%), Positives = 92/156 (58%)

Query:    47 DTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEK 106
             + D E AL+WA +E+LPT+DRL+  +   +     ++      I++ KLG  +    +E+
Sbjct:    35 EEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINE-----IDIQKLGFQDTKKLLER 89

Query:   107 LIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKG 166
             LIK  + ++ +LL K++KR+D+VG+ LPTIEVR+ +L VEA+  V  G+ LPT  N    
Sbjct:    90 LIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHV-GGRALPTFVNFISN 148

Query:   167 MIS-VLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
                  L  L    + + K  ILN VSGI+KPG + L
Sbjct:   149 FADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMAL 184

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015692 "lead ion transport" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=RCA;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;TAS

GO:0010193 "response to ozone" evidence=IEP

GO:0046865 "terpenoid transport" evidence=IDA

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 9.4e-17, P = 9.4e-17
 Identities = 51/157 (32%), Positives = 90/157 (57%)

Query:    46 EDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIE 105
             ++ + E  L+WA ++RLPTY R++  +F     +D+V  + K+ I +  L A E+ + ++
Sbjct:    17 DEIEDEEELRWAALQRLPTYSRIRRGIF-----RDMV-GEPKE-IQIGNLEASEQRLLLD 69

Query:   106 KLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFK 165
             +L+  +E+D  Q   ++RKR D V +K P IEVR++NL VE+   V   + LPT+ N   
Sbjct:    70 RLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHV-GSRALPTIPNFII 128

Query:   166 GMIS-VLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
              M   +L  +        K+ IL+ +SG+++P  + L
Sbjct:   129 NMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTL 165

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0042335 "cuticle development" evidence=IMP

TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 55/158 (34%), Positives = 85/158 (53%)

Query:    51 ENALQWAEIERLP-----TYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIE 105
             E  L+WA I RLP     T++ +              D    Q I+V KL   +R + + 
Sbjct:    35 EEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREMLVR 94

Query:   106 KLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHG-KPLPTLWNSF 164
             + +   + DN +LL  I++R+D+VG+++P IEVR++NL +EA  +V  G + LPTL N  
Sbjct:    95 QALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEA--DVQAGTRALPTLVNVS 152

Query:   165 KGMIS-VLPKLSGYKSLEAKINILNRVSGILKPGSVNL 201
             +      L  L   K  + K+NIL  +SGI+KPG + L
Sbjct:   153 RDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTL 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       200   0.00087  111 3  11 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.08u 0.10s 20.18t   Elapsed:  00:00:01
  Total cpu time:  20.09u 0.10s 20.19t   Elapsed:  00:00:01
  Start:  Sat May 11 13:03:46 2013   End:  Sat May 11 13:03:47 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022529001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (864 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	5e-38
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.001

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  140 bits (354), Expect = 5e-38
 Identities = 75/191 (39%), Positives = 109/191 (57%), Gaps = 16/191 (8%)

Query: 20  IGRSLKSSFRLQTSSFRSSSAISSRREDT--DVENALQWAEIERLPTYDRLKTSLFDVNS 77
           I RS+  S R     F S  + S RR  +  + E AL+WA IE+LPTY RL+TS+     
Sbjct: 12  ISRSVSRSSRNMEDVF-SGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIM---- 66

Query: 78  NKDLVDN--QGKQAIN----VTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGV 131
            K  V+N   G Q ++    VTKL   +R  FI+ + K  E DN + L+K R R+D+VG+
Sbjct: 67  -KSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGI 125

Query: 132 KLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK-SLEAKINILNRV 190
           KLPT+EVR+++L VEA C  +  + LPTL N+ + +      + G   + + K+ IL   
Sbjct: 126 KLPTVEVRFEHLTVEADCY-IGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDA 184

Query: 191 SGILKPGSVNL 201
           SGI+KP  + L
Sbjct: 185 SGIIKPSRMTL 195

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 22/111 (19%)

Query: 112 EHDNLQLLRKIRKRMDKVGVKLP--TIEVRYKNLWVEAKCEVVHGKP-LPTLWNSFKGMI 168
           E +    ++  RK +D   +      + V YKNL       V       PT  N      
Sbjct: 2   EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG---VAADSDYQPTFPN-----A 53

Query: 169 SVLPKLSGYKSLEA-----KINILNRVSGILKPGSVNL------ADCLTFL 208
            +     G++ L+        +IL  + G++KPG + +      + C T L
Sbjct: 54  LLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLL 104

[Transport and binding proteins, Other]. Length = 1394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.96
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.68
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.99
PF14510	85	ABC_trans_N: ABC-transporter extracellular N-termi	98.91
PLN03211	659	ABC transporter G-25; Provisional	98.86
COG4559	259	ABC-type hemin transport system, ATPase component	98.79
PLN03140	1470	ABC transporter G family member; Provisional	98.78
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.77
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.64
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.62
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.59
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.59
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.58
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.57
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.56
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.56
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.54
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.54
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.53
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.53
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.53
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.53
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.52
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.52
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.52
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.52
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.52
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.52
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.52
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.51
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.51
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.51
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.51
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.51
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.51
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.51
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.51
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.51
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.51
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.51
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.5
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.5
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.5
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.5
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.49
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.49
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.49
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.49
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.49
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.48
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.48
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.48
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.48
PRK10908	222	cell division protein FtsE; Provisional	98.48
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.48
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.48
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.47
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.47
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.47
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.47
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.47
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.47
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.47
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.47
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.46
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.46
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.46
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.46
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.46
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.46
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.46
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.46
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.46
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.46
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.45
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.45
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.45
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.45
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.45
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.45
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.45
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.45
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.45
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.45
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.44
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.44
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.44
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.44
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.44
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.43
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.43
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.43
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.43
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.43
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.43
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.43
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.43
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.42
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.42
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.42
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.42
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.42
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.42
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.42
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.41
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.41
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.41
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.41
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.41
cd03246	173	ABCC_Protease_Secretion This family represents the	98.41
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.41
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.4
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.4
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.4
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.4
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.4
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.4
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.4
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.4
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.4
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.4
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.4
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.4
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.39
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.39
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.39
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.39
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.38
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.38
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.38
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.38
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.38
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.37
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.37
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.37
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.37
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.37
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.37
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.36
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.36
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.36
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.36
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.36
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.35
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.35
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.35
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.35
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.35
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.35
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.35
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.35
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.35
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.35
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.33
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.33
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.33
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.33
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.33
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.32
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.31
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.31
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.31
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.31
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.3
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.3
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.3
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.29
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.29
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.28
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.28
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.27
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.27
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.27
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.27
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.26
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.25
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.25
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.24
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.24
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.24
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.24
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.22
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.21
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.21
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.2
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.2
PRK10938	490	putative molybdenum transport ATP-binding protein	98.19
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.19
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.19
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.17
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.16
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.16
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.16
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.16
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.15
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.15
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.15
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.15
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.15
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.15
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.14
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.14
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.14
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.14
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.13
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.13
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.13
PRK10938	490	putative molybdenum transport ATP-binding protein	98.12
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.12
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.12
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.12
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.12
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.12
COG4181	228	Predicted ABC-type transport system involved in ly	98.11
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.11
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.11
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.1
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.09
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.09
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.08
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.08
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.08
PRK11147	635	ABC transporter ATPase component; Reviewed	98.07
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.07
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.07
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.06
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.06
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.05
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.05
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.04
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.03
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.02
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.02
PRK11147	635	ABC transporter ATPase component; Reviewed	98.01
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.01
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.01
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.99
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.99
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.99
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.98
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.97
PLN03073	718	ABC transporter F family; Provisional	97.97
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.96
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.95
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.94
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.94
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.93
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.93
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.92
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.92
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.91
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	97.91
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.9
PLN03073	718	ABC transporter F family; Provisional	97.89
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	97.85
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	97.85
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.84
PTZ00243	1560	ABC transporter; Provisional	97.83
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.83
PLN03232	1495	ABC transporter C family member; Provisional	97.83
PRK13409	590	putative ATPase RIL; Provisional	97.82
PRK13409	590	putative ATPase RIL; Provisional	97.81
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.81
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.81
PLN03130	1622	ABC transporter C family member; Provisional	97.8
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.79
COG4133	209	CcmA ABC-type transport system involved in cytochr	97.77
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.77
COG4988	559	CydD ABC-type transport system involved in cytochr	97.76
COG4987	573	CydC ABC-type transport system involved in cytochr	97.76
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.75
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	97.71
COG4178	604	ABC-type uncharacterized transport system, permeas	97.7
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.68
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.68
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.67
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.66
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.65
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.65
COG1123	539	ATPase components of various ABC-type transport sy	97.64
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.64
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.62
KOG0054	1381	consensus Multidrug resistance-associated protein/	97.6
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.59
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	97.57
PTZ00243	1560	ABC transporter; Provisional	97.56
COG0488	530	Uup ATPase components of ABC transporters with dup	97.56
PLN03232	1495	ABC transporter C family member; Provisional	97.55
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.55
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.52
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.5
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.48
COG1123	539	ATPase components of various ABC-type transport sy	97.48
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.47
PLN03130	1622	ABC transporter C family member; Provisional	97.46
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.44
COG0488	530	Uup ATPase components of ABC transporters with dup	97.42
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	97.41
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.41
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.4
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	97.38
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	97.37
COG4136	213	ABC-type uncharacterized transport system, ATPase	97.37
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.29
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.28
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	97.25
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	97.24
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.22
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.15
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.14
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.08
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.06
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	96.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	96.96
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.9
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.9
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.88
KOG0054	1381	consensus Multidrug resistance-associated protein/	96.82
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.81
PF13245	76	AAA_19: Part of AAA domain	96.78
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	96.74
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.73
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.73
PRK05973	237	replicative DNA helicase; Provisional	96.72
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.66
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.66
PRK09183	259	transposase/IS protein; Provisional	96.62
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.61
KOG0927	614	consensus Predicted transporter (ABC superfamily)	96.58
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	96.56
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	96.54
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.49
PRK13851	344	type IV secretion system protein VirB11; Provision	96.46
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.43
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	96.42
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.37
TIGR00767	415	rho transcription termination factor Rho. Members	96.37
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.36
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.32
PRK10416	318	signal recognition particle-docking protein FtsY;	96.31
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.3
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.3
PLN02796	347	D-glycerate 3-kinase	96.28
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.26
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.25
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	96.24
PRK15494	339	era GTPase Era; Provisional	96.22
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.2
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.19
PRK08149	428	ATP synthase SpaL; Validated	96.17
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.16
PRK00098	298	GTPase RsgA; Reviewed	96.14
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	96.12
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	96.11
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.1
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.08
PLN02200	234	adenylate kinase family protein	96.07
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	96.06
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.04
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	95.99
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	95.99
PRK00635	1809	excinuclease ABC subunit A; Provisional	95.97
KOG2373	514	consensus Predicted mitochondrial DNA helicase twi	95.97
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	95.96
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.95
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.94
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	95.92
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	95.92
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	95.91
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	95.91
PTZ00035	337	Rad51 protein; Provisional	95.89
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.87
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.85
PRK01889	356	GTPase RsgA; Reviewed	95.84
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.77
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.75
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.75
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.73
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	95.73
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.69
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	95.68
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	95.67
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	95.67
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.64
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	95.62
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.61
PRK09862	506	putative ATP-dependent protease; Provisional	95.6
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.59
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.57
PRK09165	497	replicative DNA helicase; Provisional	95.56
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	95.55
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	95.55
PRK09099	441	type III secretion system ATPase; Provisional	95.53
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.5
PRK07004	460	replicative DNA helicase; Provisional	95.43
PRK07594	433	type III secretion system ATPase SsaN; Validated	95.42
PRK05595	444	replicative DNA helicase; Provisional	95.42
TIGR02236	310	recomb_radA DNA repair and recombination protein R	95.42
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	95.4
PRK08760	476	replicative DNA helicase; Provisional	95.39
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.37
KOG0062	582	consensus ATPase component of ABC transporters wit	95.37
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	95.35
PRK11823	446	DNA repair protein RadA; Provisional	95.32
PRK05636	505	replicative DNA helicase; Provisional	95.31
PHA02542	473	41 41 helicase; Provisional	95.31
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.31
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	95.3
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.3
PRK00635	1809	excinuclease ABC subunit A; Provisional	95.27
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	95.25
PRK08506	472	replicative DNA helicase; Provisional	95.24
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	95.23
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	95.23
PRK05748	448	replicative DNA helicase; Provisional	95.23
PRK06936	439	type III secretion system ATPase; Provisional	95.22
PLN02165	334	adenylate isopentenyltransferase	95.21
cd00983	325	recA RecA is a bacterial enzyme which has roles in	95.2
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	95.16
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	95.14
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	95.14
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	95.14
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	95.13
PRK06321	472	replicative DNA helicase; Provisional	95.12
PRK08006	471	replicative DNA helicase; Provisional	95.12
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	95.1
PRK13764	602	ATPase; Provisional	95.08
COG4172	534	ABC-type uncharacterized transport system, duplica	95.07
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	95.03
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	95.02
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	94.99
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	94.97
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	94.95
TIGR02533	486	type_II_gspE general secretory pathway protein E.	94.85
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.84
PRK06904	472	replicative DNA helicase; Validated	94.84
PRK15455	644	PrkA family serine protein kinase; Provisional	94.82
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	94.81
PRK12288	347	GTPase RsgA; Reviewed	94.8
PRK04301	317	radA DNA repair and recombination protein RadA; Va	94.8
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	94.78
PLN02674	244	adenylate kinase	94.69
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	94.69
PHA02562	562	46 endonuclease subunit; Provisional	94.68
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	94.65
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	94.64
PRK12289	352	GTPase RsgA; Reviewed	94.63
PRK08903	227	DnaA regulatory inactivator Hda; Validated	94.61
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	94.59
PRK09302	509	circadian clock protein KaiC; Reviewed	94.59
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.53
COG4172	534	ABC-type uncharacterized transport system, duplica	94.51
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	94.43
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	94.42
PRK08840	464	replicative DNA helicase; Provisional	94.4
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	94.37
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	94.36
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	94.35
PRK04863	1486	mukB cell division protein MukB; Provisional	94.34
PRK06820	440	type III secretion system ATPase; Validated	94.26
COG1855	604	ATPase (PilT family) [General function prediction	94.23

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.3e-38  Score=336.08  Aligned_cols=197  Identities=36%  Similarity=0.523  Sum_probs=159.4

Q ss_pred             hhhhccccccccCCcc--cccccccC-CC----CCcchHHhhHHHHHhhCCchhhhhcccccccCCCccccc-cCccccc
Q 037424           20 IGRSLKSSFRLQTSSF--RSSSAISS-RR----EDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDN-QGKQAIN   91 (231)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~-~~----~~~~dee~l~waaierLPt~~r~r~~~l~~~~~~~g~~~-~~~~~vd   91 (231)
                      +.|+++++.  +.++|  +++|++.+ ++    ..+||||+|+|||+||||||+|+|++++.....++|.+. ....++|
T Consensus         8 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (1470)
T PLN03140          8 MRRSISRSV--SRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVD   85 (1470)
T ss_pred             HHHHHHHHh--hhhhhhhhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccc
Confidence            445544333  23356  78885532 21    256889999999999999999999999954210122110 0011499


Q ss_pred             ccCCChhhhhHHHHHHHhhcccCHHHHHHHHHHhhhhcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhc
Q 037424           92 VTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVL  171 (231)
Q Consensus        92 v~~L~~~~~~~l~~~l~~~~~~D~~~~L~~lr~r~drvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l  171 (231)
                      +.+|+.++++.+++++++++++|+++|++++++|.+++|+++|++||+|+||+|+|++ +++++++||++|.+.+.++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~-~~~~~~~~t~~~~~~~~~~~~  164 (1470)
T PLN03140         86 VTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADC-YIGSRALPTLPNAARNIAESA  164 (1470)
T ss_pred             cccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEe-cCCcccCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 899999999999999988866


Q ss_pred             ccccCC-CCccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          172 PKLSGY-KSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       172 ~~~~~~-~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...++. .+++.+++||+||||.|+||||++||||||||||||||+|+=
T Consensus       165 ~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG  213 (1470)
T PLN03140        165 LGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG  213 (1470)
T ss_pred             HHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Confidence            554443 344567889999999999999999999999999999999873

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=5.1e-29  Score=256.42  Aligned_cols=151  Identities=42%  Similarity=0.604  Sum_probs=133.5

Q ss_pred             cchHHhhHHHHHhhCCchhhhhcccccccCCCccccccCcccccccCCChhhhhHHHHHHHhhcccCHHHHHHHHHHhhh
Q 037424           48 TDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMD  127 (231)
Q Consensus        48 ~~dee~l~waaierLPt~~r~r~~~l~~~~~~~g~~~~~~~~vdv~~L~~~~~~~l~~~l~~~~~~D~~~~L~~lr~r~d  127 (231)
                      +|||++|||||+|||||++|   +++....  ++       ++|+.+++..+++.++++.++..++|+++++.+++++++
T Consensus        12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~--~~-------~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~   79 (1391)
T KOG0065|consen   12 DEDEEALRWAAIERLPTFDR---SLLRSIF--ES-------EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERID   79 (1391)
T ss_pred             chhHHHHHHHHHhcCccccc---hhhhhhc--cC-------cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcC
Confidence            45999999999999999999   6664321  11       499999999999999999999999999999999999999


Q ss_pred             hcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCC
Q 037424          128 KVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTF  207 (231)
Q Consensus       128 rvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPG  207 (231)
                      ++  +.|+++++|+++.++|++ ..|    ||++|.+.+.++..++..+.. ++++++||+|++|+++||||||||||||
T Consensus        80 ~~--~~p~~~~~~~~~gv~a~~-~~~----~t~~n~~~~~~~~~~~~~~~~-~~~~~~il~~~sg~~~pg~m~lvLG~pg  151 (1391)
T KOG0065|consen   80 RV--ELPTIEVRFSALGVEADV-TYG----PTLVNILSNPLESILRMLGKR-KKKKIQILKDISGIIKPGEMTLVLGPPG  151 (1391)
T ss_pred             cc--cCCceEEEeeeccccccc-ccc----hhhhhhhhhHHHHHhhhcccc-ccccceeecCcceeEcCCceEEEecCCC
Confidence            97  899999999999999998 555    999999999888766544333 5667899999999999999999999999


Q ss_pred             CCchhHHHHHH
Q 037424          208 LHPLDVFQVLF  218 (231)
Q Consensus       208 SGcSTlLK~L~  218 (231)
                      ||||||||+|+
T Consensus       152 sG~ttllkal~  162 (1391)
T KOG0065|consen  152 SGKTTLLKALA  162 (1391)
T ss_pred             CchHHHHHHHh
Confidence            99999999986

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.68  E-value=9.5e-17  Score=170.33  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=84.6

Q ss_pred             ccCHHHHHHHHHHhhhhcC--CCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCcccccccccc
Q 037424          112 EHDNLQLLRKIRKRMDKVG--VKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNR  189 (231)
Q Consensus       112 ~~D~~~~L~~lr~r~drvG--i~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~d  189 (231)
                      ++|+++|++.+.++.++.+  ++.++++|+|+||+|++.  ..+...+||++|.+.+.+......+..++++++++||+|
T Consensus         2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~   79 (1394)
T TIGR00956         2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV--AADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKP   79 (1394)
T ss_pred             CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE--eccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeC
Confidence            4788999987666555555  445599999999999995  477788999999988876633322211334456889999


Q ss_pred             ceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          190 VSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |||.++||||++|+||||||||||||+|+-
T Consensus        80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG  109 (1394)
T TIGR00956        80 MDGLIKPGELTVVLGRPGSGCSTLLKTIAS  109 (1394)
T ss_pred             CEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence            999999999999999999999999999873

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.99  E-value=6.6e-10  Score=110.06  Aligned_cols=57  Identities=26%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             CCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCchh
Q 037424          133 LPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLD  212 (231)
Q Consensus       133 lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcST  212 (231)
                      ...+.+.|+|+++.+..                            +.+ ..++||+||||.++||||+.+|||+||||||
T Consensus        21 ~~~~~~~~~~~~~~~~~----------------------------~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT   71 (613)
T KOG0061|consen   21 LEPVKLSFRNLTLSSKE----------------------------KSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT   71 (613)
T ss_pred             cccceeEEEEEEEEecC----------------------------CCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence            45577889999998865                            111 4578999999999999999999999999999


Q ss_pred             HHHHHH
Q 037424          213 VFQVLF  218 (231)
Q Consensus       213 lLK~L~  218 (231)
                      ||++|+
T Consensus        72 LL~~La   77 (613)
T KOG0061|consen   72 LLNALA   77 (613)
T ss_pred             HHHHHh
Confidence            999986

>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal

Probab=98.91  E-value=2.2e-09  Score=80.65  Aligned_cols=53  Identities=26%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             ccCHHHHHHHHHHhhhhcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhh
Q 037424          112 EHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKG  166 (231)
Q Consensus       112 ~~D~~~~L~~lr~r~drvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~  166 (231)
                      +||+++|+++++++.++.|++.|++||.|+||+|.|.+  .+..++||++|.+++
T Consensus        33 ~Fdl~~~lr~~~~~~~~~g~~~r~~GV~fknLtV~G~g--~~~~~q~Tv~n~~l~   85 (85)
T PF14510_consen   33 DFDLRRWLRNFVRRAEEQGIKPRKAGVSFKNLTVYGVG--AGAQYQPTVGNVLLN   85 (85)
T ss_pred             cccHHHHHHHHHHHHHhCCCCCCeEEEEEeCCeEEEEe--cCccccCchhhhhcC
Confidence            79999999999999999999999999999999999997  889999999998864

>PLN03211 ABC transporter G-25; Provisional

Probab=98.86  E-value=6.1e-09  Score=103.96  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             CCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCchh
Q 037424          133 LPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLD  212 (231)
Q Consensus       133 lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcST  212 (231)
                      .+.+.++|.|+++.+.. .....+...    +...+..........++...+.||+|||+.++|||++.|+||+||||||
T Consensus        35 ~~~~~~~~~~~~y~~~~-~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST  109 (659)
T PLN03211         35 CYPITLKFMDVCYRVKF-ENMKNKGSN----IKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST  109 (659)
T ss_pred             CCceEEEEEeEEEEEcc-CCCcccccc----cccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence            35689999999999764 110111111    1111111000000011122467999999999999999999999999999


Q ss_pred             HHHHHH
Q 037424          213 VFQVLF  218 (231)
Q Consensus       213 lLK~L~  218 (231)
                      |||+|+
T Consensus       110 LL~iLa  115 (659)
T PLN03211        110 LLNALA  115 (659)
T ss_pred             HHHHHh
Confidence            999996

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.79  E-value=6.8e-09  Score=91.44  Aligned_cols=35  Identities=23%  Similarity=0.108  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|++||-.++||||+.|+||.|||||||||.|.
T Consensus        14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~Ls   48 (259)
T COG4559          14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALS   48 (259)
T ss_pred             ceeccCcceeccCCcEEEEECCCCccHHHHHHHhh
Confidence            45899999999999999999999999999999984

>PLN03140 ABC transporter G family member; Provisional

Probab=98.78  E-value=9.9e-09  Score=110.23  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCch
Q 037424          132 KLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPL  211 (231)
Q Consensus       132 ~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcS  211 (231)
                      +...+.+.|+||++.... ....+.                    ......++.||+||||.|+||++++|+||+|||||
T Consensus       862 ~~~~~~~~~~~v~y~v~~-~~~~~~--------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKT  920 (1470)
T PLN03140        862 PFTPLAMSFDDVNYFVDM-PAEMKE--------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKT  920 (1470)
T ss_pred             CCCcceEEEEEEEEEEcc-Cccccc--------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCCHH
Confidence            444567899999999864 111000                    01112345799999999999999999999999999


Q ss_pred             hHHHHHHH
Q 037424          212 DVFQVLFL  219 (231)
Q Consensus       212 TlLK~L~~  219 (231)
                      ||||+|+=
T Consensus       921 TLL~~LaG  928 (1470)
T PLN03140        921 TLMDVLAG  928 (1470)
T ss_pred             HHHHHHcC
Confidence            99999874

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.77  E-value=5.2e-09  Score=103.38  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             cccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          181 EAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       181 k~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.++.||+|+||.|+||||++|+||+||||||||++|+-
T Consensus        35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g   73 (617)
T TIGR00955        35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF   73 (617)
T ss_pred             cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence            445779999999999999999999999999999999973

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.64  E-value=2.1e-08  Score=90.91  Aligned_cols=36  Identities=17%  Similarity=0.052  Sum_probs=34.4

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.+|+|||..|+||+++.+|||+|||||||||+|.
T Consensus        17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~   52 (293)
T COG1131          17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILA   52 (293)
T ss_pred             CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence            477999999999999999999999999999999986

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.62  E-value=3.3e-08  Score=86.03  Aligned_cols=37  Identities=11%  Similarity=-0.014  Sum_probs=34.5

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+.||+|+|..|+||+++.|+|+.|||||||||+|+-
T Consensus        33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G   69 (236)
T cd03267          33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG   69 (236)
T ss_pred             CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3569999999999999999999999999999999974

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.59  E-value=6.3e-08  Score=103.73  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+.||+||||.|+||+++.|+||+|||||||||+|+=
T Consensus       775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag  811 (1394)
T TIGR00956       775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE  811 (1394)
T ss_pred             CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence            3569999999999999999999999999999999974

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=7.2e-08  Score=86.01  Aligned_cols=35  Identities=6%  Similarity=-0.213  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus        34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G   68 (274)
T PRK14265         34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR   68 (274)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999999999999999999983

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.58  E-value=4.1e-08  Score=83.89  Aligned_cols=37  Identities=8%  Similarity=-0.181  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++||+|+|..|+||+++.|+||+|||||||||+|+-+
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4599999999999999999999999999999999743

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.57  E-value=4.3e-08  Score=83.64  Aligned_cols=36  Identities=14%  Similarity=-0.023  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|..|+||+++.|+||+|||||||||+|+=
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G   52 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG   52 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.56  E-value=1.4e-07  Score=80.01  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+.++|+|++|||||||||+|+-
T Consensus        22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G   57 (194)
T cd03213          22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG   57 (194)
T ss_pred             ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            458999999999999999999999999999999974

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1e-07  Score=84.01  Aligned_cols=36  Identities=6%  Similarity=-0.076  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999744

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=1.1e-07  Score=84.52  Aligned_cols=37  Identities=19%  Similarity=-0.042  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|..|+||+++.|+||+|||||||||+|+-+
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632         22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3589999999999999999999999999999999754

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.2e-07  Score=83.02  Aligned_cols=36  Identities=11%  Similarity=-0.024  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|||-.|+||+++.|+|++|||||||||+|+-+
T Consensus        21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273         21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.5e-07  Score=83.57  Aligned_cols=37  Identities=3%  Similarity=-0.105  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|||-.|+||+++.|+|++|||||||||+|+-+
T Consensus        33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   69 (267)
T PRK14237         33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM   69 (267)
T ss_pred             eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3589999999999999999999999999999999754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.9e-07  Score=82.62  Aligned_cols=36  Identities=8%  Similarity=-0.063  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            489999999999999999999999999999999754

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.4e-07  Score=83.94  Aligned_cols=36  Identities=14%  Similarity=-0.022  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.53  E-value=6.5e-08  Score=82.15  Aligned_cols=36  Identities=17%  Similarity=0.011  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            359999999999999999999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.53  E-value=6.4e-08  Score=82.32  Aligned_cols=35  Identities=6%  Similarity=-0.078  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||++++|+|++|||||||||+|+=
T Consensus        14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03301          14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG   48 (213)
T ss_pred             eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.53  E-value=6.1e-08  Score=85.56  Aligned_cols=37  Identities=14%  Similarity=-0.002  Sum_probs=35.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++|+|||-.|++||++.|+||+||||||||+.|..+
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            7899999999999999999999999999999998754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.53  E-value=6.2e-08  Score=82.16  Aligned_cols=35  Identities=17%  Similarity=0.018  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (205)
T cd03226          14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG   48 (205)
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.4e-07  Score=82.23  Aligned_cols=35  Identities=11%  Similarity=0.056  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250         17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999999999999999974

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.52  E-value=6.9e-08  Score=82.17  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3599999999999999999999999999999998743

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.52  E-value=1.4e-07  Score=84.58  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=32.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|||..|++|+++.|+||.|||||||+|+|.
T Consensus        18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL   51 (254)
T COG1121          18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL   51 (254)
T ss_pred             eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3899999999999999999999999999999985

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.52  E-value=6.6e-08  Score=82.76  Aligned_cols=35  Identities=14%  Similarity=-0.073  Sum_probs=33.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG   53 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999974

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.52  E-value=7.8e-08  Score=82.86  Aligned_cols=38  Identities=18%  Similarity=-0.012  Sum_probs=34.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+++|+|+|..|+||+++.|+||+|||||||||+|.-+
T Consensus        19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~   56 (226)
T cd03234          19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR   56 (226)
T ss_pred             ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence            35699999999999999999999999999999998743

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.52  E-value=6.8e-08  Score=82.43  Aligned_cols=36  Identities=6%  Similarity=0.023  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            599999999999999999999999999999998743

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.52  E-value=7.3e-08  Score=81.88  Aligned_cols=37  Identities=5%  Similarity=0.037  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3589999999999999999999999999999999743

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.51  E-value=7e-08  Score=83.52  Aligned_cols=37  Identities=14%  Similarity=-0.034  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999999743

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.51  E-value=7.7e-08  Score=80.14  Aligned_cols=36  Identities=19%  Similarity=-0.032  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|..|+||++++|+|++|||||||||+|+=+
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.51  E-value=7.4e-08  Score=83.37  Aligned_cols=35  Identities=9%  Similarity=-0.005  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (235)
T cd03261          14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG   48 (235)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999973

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.51  E-value=7.9e-08  Score=81.92  Aligned_cols=38  Identities=29%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+.||+|+|..|+||+++.|+|++||||||||++|+=+
T Consensus        19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (202)
T cd03233          19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR   56 (202)
T ss_pred             CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence            35699999999999999999999999999999998643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.51  E-value=7.8e-08  Score=82.21  Aligned_cols=36  Identities=14%  Similarity=-0.024  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G   53 (221)
T TIGR02211        18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG   53 (221)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999863

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.51  E-value=7.8e-08  Score=82.42  Aligned_cols=35  Identities=11%  Similarity=-0.082  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265          14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.51  E-value=9.1e-08  Score=80.83  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus        20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.51  E-value=7.8e-08  Score=86.38  Aligned_cols=36  Identities=14%  Similarity=-0.052  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|++|++|.|+||.|||||||||+|+=
T Consensus        15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence            569999999999999999999999999999999873

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.51  E-value=8.6e-08  Score=82.17  Aligned_cols=36  Identities=8%  Similarity=-0.004  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+.+.|+||+|||||||||+|+=
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G   52 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG   52 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            469999999999999999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.7e-07  Score=81.86  Aligned_cols=36  Identities=6%  Similarity=-0.105  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|..|.||+.+.|+|++|||||||||+|+-
T Consensus        18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999974

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.51  E-value=8.2e-08  Score=81.51  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03262          13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL   48 (213)
T ss_pred             eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            348999999999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.50  E-value=8.9e-08  Score=81.55  Aligned_cols=36  Identities=11%  Similarity=0.058  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (213)
T cd03259          13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG   48 (213)
T ss_pred             eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999863

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.50  E-value=8.7e-08  Score=82.37  Aligned_cols=37  Identities=14%  Similarity=0.019  Sum_probs=34.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .+|+|+|-.|.||+++.|+|++|||||||||+|+=+.
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5899999999999999999999999999999998653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.50  E-value=5.7e-08  Score=102.16  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=35.4

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++.||+||+|.+|||-||.|+|.+||||||||++|+
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA  838 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA  838 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh
Confidence            5688999999999999999999999999999999986

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.50  E-value=9e-08  Score=81.77  Aligned_cols=35  Identities=14%  Similarity=-0.006  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+++.|+||+|||||||||+|+-
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999874

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.50  E-value=8.9e-08  Score=81.15  Aligned_cols=36  Identities=8%  Similarity=-0.113  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            599999999999999999999999999999998743

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.49  E-value=9.1e-08  Score=81.33  Aligned_cols=35  Identities=9%  Similarity=-0.050  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|.||+++.|+|++|||||||||+|+=
T Consensus        14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (210)
T cd03269          14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG   48 (210)
T ss_pred             EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999999999999999974

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=9e-08  Score=83.81  Aligned_cols=36  Identities=6%  Similarity=-0.119  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+||+|||||||||+|+-
T Consensus        19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999984

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=9.4e-08  Score=82.73  Aligned_cols=36  Identities=14%  Similarity=-0.011  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629         22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            459999999999999999999999999999999974

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.49  E-value=1.5e-07  Score=82.61  Aligned_cols=36  Identities=17%  Similarity=-0.015  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus        14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   49 (256)
T TIGR03873        14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG   49 (256)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            359999999999999999999999999999999863

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.49  E-value=9.2e-08  Score=82.39  Aligned_cols=35  Identities=20%  Similarity=0.088  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|..|+||+.++|+|++|||||||||+|+=
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (230)
T TIGR03410        14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG   48 (230)
T ss_pred             EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.48  E-value=9.7e-08  Score=81.93  Aligned_cols=37  Identities=14%  Similarity=0.112  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324        21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999999999999999999999744

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.48  E-value=9.9e-08  Score=82.17  Aligned_cols=35  Identities=17%  Similarity=0.028  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218          14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999973

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.1e-07  Score=83.27  Aligned_cols=36  Identities=11%  Similarity=-0.036  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            489999999999999999999999999999999743

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.48  E-value=9.6e-08  Score=84.73  Aligned_cols=36  Identities=11%  Similarity=-0.123  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   68 (267)
T PRK14235         33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM   68 (267)
T ss_pred             EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            489999999999999999999999999999999754

>PRK10908 cell division protein FtsE; Provisional

Probab=98.48  E-value=1e-07  Score=81.77  Aligned_cols=36  Identities=11%  Similarity=0.118  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (222)
T PRK10908         15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG   50 (222)
T ss_pred             CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999863

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.48  E-value=1e-07  Score=82.61  Aligned_cols=36  Identities=8%  Similarity=-0.004  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||++++|+||+|||||||||+|+-
T Consensus        15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999974

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.48  E-value=1e-07  Score=82.80  Aligned_cols=37  Identities=14%  Similarity=-0.018  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|||-.|+||+++.|+||+|||||||||+|+-+
T Consensus        15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999999743

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.47  E-value=1.2e-07  Score=78.62  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~   51 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL   51 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999999999999999999999754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.47  E-value=1.1e-07  Score=82.06  Aligned_cols=36  Identities=14%  Similarity=-0.068  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            699999999999999999999999999999999743

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.47  E-value=1.2e-07  Score=78.34  Aligned_cols=35  Identities=17%  Similarity=0.033  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus        14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   48 (163)
T cd03216          14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG   48 (163)
T ss_pred             EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.47  E-value=1.1e-07  Score=82.19  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus        14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (236)
T cd03219          14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG   48 (236)
T ss_pred             EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence            48999999999999999999999999999999973

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.47  E-value=3.9e-07  Score=81.32  Aligned_cols=39  Identities=10%  Similarity=-0.162  Sum_probs=35.4

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+.+|+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl   73 (264)
T PRK13546         35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS   73 (264)
T ss_pred             CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345799999999999999999999999999999999743

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.47  E-value=1.1e-07  Score=82.12  Aligned_cols=36  Identities=17%  Similarity=0.003  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|.||+++.|+|++|||||||||+|+-
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG   49 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999974

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.47  E-value=1.2e-07  Score=83.43  Aligned_cols=37  Identities=19%  Similarity=-0.122  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701         19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999999743

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.1e-07  Score=83.99  Aligned_cols=36  Identities=8%  Similarity=-0.011  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (255)
T PRK11248         14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG   49 (255)
T ss_pred             eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999973

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.46  E-value=1.2e-07  Score=82.63  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=33.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||-.|+||+++.|+|++|||||||||+|+-
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK11264         17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL   51 (250)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999999999999999999974

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.46  E-value=1.2e-07  Score=80.37  Aligned_cols=36  Identities=11%  Similarity=0.014  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.+.||+++.|+|++|||||||||+|+-
T Consensus        13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (208)
T cd03268          13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG   48 (208)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999973

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.46  E-value=1.2e-07  Score=80.54  Aligned_cols=35  Identities=11%  Similarity=0.046  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||-.|+||+++.|+|++|||||||||+|+=
T Consensus        15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   49 (204)
T PRK13538         15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG   49 (204)
T ss_pred             EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999863

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.46  E-value=9.6e-08  Score=84.20  Aligned_cols=38  Identities=16%  Similarity=0.042  Sum_probs=35.1

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..++|+|||-.|++||.+.++||+||||||||++|-.|
T Consensus        14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            46799999999999999999999999999999998643

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.46  E-value=1.2e-07  Score=82.02  Aligned_cols=37  Identities=19%  Similarity=0.092  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||++++|+|++|||||||||+|+-+
T Consensus        16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            4589999999999999999999999999999999854

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.46  E-value=1.2e-07  Score=82.25  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=33.5

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus        16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   50 (242)
T TIGR03411        16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG   50 (242)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.46  E-value=1.3e-07  Score=79.17  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=32.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG   48 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            8999999999999999999999999999999973

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.46  E-value=1.3e-07  Score=81.70  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus        20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3589999999999999999999999999999998743

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.46  E-value=1.3e-07  Score=80.18  Aligned_cols=37  Identities=14%  Similarity=0.046  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3599999999999999999999999999999998743

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.46  E-value=1.3e-07  Score=82.36  Aligned_cols=37  Identities=8%  Similarity=-0.045  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL   50 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3599999999999999999999999999999999743

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.45  E-value=2.9e-07  Score=83.06  Aligned_cols=35  Identities=9%  Similarity=0.049  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|..|+||+.+.|+|++|||||||||+|+-
T Consensus        51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G   85 (282)
T cd03291          51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG   85 (282)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999999999999999874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.3e-07  Score=82.77  Aligned_cols=36  Identities=8%  Similarity=-0.049  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|..|+||+++.|+|++|||||||||+|+=+
T Consensus        18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999999999999999998743

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.45  E-value=1.4e-07  Score=80.70  Aligned_cols=37  Identities=24%  Similarity=0.127  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            3589999999999999999999999999999999743

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.45  E-value=1.4e-07  Score=78.26  Aligned_cols=35  Identities=9%  Similarity=0.017  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|..+.||+++.|+|++|||||||||+|+-
T Consensus        14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G   48 (173)
T cd03230          14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG   48 (173)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.45  E-value=1.3e-07  Score=82.81  Aligned_cols=35  Identities=9%  Similarity=0.028  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (252)
T TIGR03005        14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMT   48 (252)
T ss_pred             eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.4e-07  Score=83.03  Aligned_cols=36  Identities=17%  Similarity=0.040  Sum_probs=34.0

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+=+
T Consensus        18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999999999999999999854

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.45  E-value=1.4e-07  Score=81.09  Aligned_cols=36  Identities=17%  Similarity=0.152  Sum_probs=33.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|..|+||+++.|+||+|||||||||+|+=+
T Consensus        17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            489999999999999999999999999999999743

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=1.3e-07  Score=81.93  Aligned_cols=36  Identities=17%  Similarity=0.026  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus        18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T PRK11614         18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG   53 (237)
T ss_pred             ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            358999999999999999999999999999999863

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.4e-07  Score=82.59  Aligned_cols=37  Identities=14%  Similarity=-0.066  Sum_probs=34.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256         17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3599999999999999999999999999999999754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.45  E-value=1.4e-07  Score=81.79  Aligned_cols=36  Identities=19%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (236)
T TIGR03864        14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTR   49 (236)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999973

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.4e-07  Score=82.43  Aligned_cols=36  Identities=11%  Similarity=-0.078  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence            358999999999999999999999999999999974

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1e-07  Score=85.66  Aligned_cols=37  Identities=5%  Similarity=-0.051  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||++++|+|++|||||||||+|+-+
T Consensus        52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3599999999999999999999999999999999753

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.44  E-value=1.4e-07  Score=81.63  Aligned_cols=37  Identities=14%  Similarity=-0.149  Sum_probs=34.6

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   70 (224)
T cd03220          34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG   70 (224)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3569999999999999999999999999999999974

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.4e-07  Score=82.31  Aligned_cols=35  Identities=9%  Similarity=-0.057  Sum_probs=33.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999974

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.4e-07  Score=84.01  Aligned_cols=36  Identities=19%  Similarity=-0.071  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   55 (280)
T PRK13649         20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG   55 (280)
T ss_pred             cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999874

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.44  E-value=1.5e-07  Score=80.88  Aligned_cols=36  Identities=19%  Similarity=0.057  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus        24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            489999999999999999999999999999999753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.44  E-value=1.5e-07  Score=83.27  Aligned_cols=37  Identities=16%  Similarity=-0.007  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL   60 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999999999999999999998743

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.5e-07  Score=82.79  Aligned_cols=36  Identities=11%  Similarity=0.006  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|.||+++.|+|++|||||||||+|+-+
T Consensus        26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            589999999999999999999999999999999854

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.43  E-value=1.6e-07  Score=81.56  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999974

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.43  E-value=1.7e-07  Score=77.66  Aligned_cols=36  Identities=22%  Similarity=0.118  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|+||+.++|+|++|||||||||+|+-
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG   49 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999874

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.43  E-value=1.5e-07  Score=83.82  Aligned_cols=37  Identities=11%  Similarity=-0.091  Sum_probs=34.4

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...+|+|||-.|++|||+.++|++|||||||||+|.=
T Consensus        16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence            3569999999999999999999999999999999864

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.43  E-value=1.7e-07  Score=80.01  Aligned_cols=36  Identities=8%  Similarity=-0.039  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (207)
T PRK13539         15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG   50 (207)
T ss_pred             eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999874

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.43  E-value=1.6e-07  Score=80.34  Aligned_cols=36  Identities=6%  Similarity=0.035  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   49 (218)
T cd03290          14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG   49 (218)
T ss_pred             CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            469999999999999999999999999999999974

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.43  E-value=1.6e-07  Score=76.35  Aligned_cols=35  Identities=11%  Similarity=-0.011  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|..++||+.+.|+|++|||||||+++|+-
T Consensus        14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G   48 (144)
T cd03221          14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG   48 (144)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            58999999999999999999999999999999863

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.43  E-value=1.7e-07  Score=79.19  Aligned_cols=36  Identities=11%  Similarity=0.021  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+||.|||||||||+|+=
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (198)
T TIGR01189        13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG   48 (198)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999863

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.43  E-value=1.7e-07  Score=80.97  Aligned_cols=36  Identities=17%  Similarity=0.112  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||++++|+|++|||||||||+|+-+
T Consensus        15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   50 (236)
T cd03253          15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF   50 (236)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.42  E-value=1.8e-07  Score=78.03  Aligned_cols=34  Identities=15%  Similarity=0.068  Sum_probs=32.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.++||+.+.|+|++|||||||||+|+
T Consensus        14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~   47 (178)
T cd03229          14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA   47 (178)
T ss_pred             EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.7e-07  Score=81.43  Aligned_cols=37  Identities=11%  Similarity=-0.008  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3599999999999999999999999999999999753

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.42  E-value=1.6e-07  Score=81.71  Aligned_cols=36  Identities=17%  Similarity=0.001  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|..|+||+++.|+|++|||||||||+|+-+
T Consensus        15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            489999999999999999999999999999999754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=1.7e-07  Score=81.91  Aligned_cols=37  Identities=14%  Similarity=-0.033  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999998743

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.42  E-value=1.8e-07  Score=79.79  Aligned_cols=36  Identities=22%  Similarity=0.088  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            599999999999999999999999999999999743

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.42  E-value=1.8e-07  Score=81.75  Aligned_cols=36  Identities=19%  Similarity=-0.153  Sum_probs=33.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|..|+||+.++|+|++|||||||||+|+-+
T Consensus        17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (253)
T TIGR02323        17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR   52 (253)
T ss_pred             eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            489999999999999999999999999999998743

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=1.8e-07  Score=81.32  Aligned_cols=35  Identities=14%  Similarity=-0.037  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus        16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (242)
T PRK11124         16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNL   50 (242)
T ss_pred             eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999873

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.7e-07  Score=81.76  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999999999999999999743

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.9e-07  Score=81.49  Aligned_cols=37  Identities=8%  Similarity=-0.076  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (249)
T PRK14253         16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM   52 (249)
T ss_pred             eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4589999999999999999999999999999999754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.41  E-value=1.8e-07  Score=82.84  Aligned_cols=36  Identities=14%  Similarity=0.012  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+||++||-.+++||++.||||.|+|||||||+|+=
T Consensus        16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~G   51 (237)
T COG0410          16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG   51 (237)
T ss_pred             eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            679999999999999999999999999999999973

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.9e-07  Score=81.71  Aligned_cols=37  Identities=8%  Similarity=-0.070  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270         17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3589999999999999999999999999999999843

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.9e-07  Score=83.80  Aligned_cols=36  Identities=19%  Similarity=-0.033  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|..|+||+.+.|+|++|||||||||+|+-
T Consensus        24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   59 (289)
T PRK13645         24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG   59 (289)
T ss_pred             cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999974

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.8e-07  Score=82.91  Aligned_cols=36  Identities=11%  Similarity=-0.086  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus        23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            489999999999999999999999999999999743

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.8e-07  Score=81.64  Aligned_cols=36  Identities=3%  Similarity=-0.123  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|..|+||+.+.|+|++|||||||||+|+=
T Consensus        16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999984

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.8e-07  Score=83.23  Aligned_cols=35  Identities=17%  Similarity=0.065  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|.||+++.|+||+|||||||||+|+=
T Consensus        21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (272)
T PRK15056         21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG   55 (272)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.41  E-value=4.3e-07  Score=81.69  Aligned_cols=36  Identities=17%  Similarity=0.063  Sum_probs=34.0

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|||-.|+||+.+.|+||+||||||||++|+=+
T Consensus        18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl   53 (275)
T cd03289          18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL   53 (275)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            489999999999999999999999999999999855

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.41  E-value=1.8e-07  Score=79.51  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|..++||+++.|+|++|||||||||+|+-+
T Consensus        14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            489999999999999999999999999999998754

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.41  E-value=2.1e-07  Score=77.26  Aligned_cols=37  Identities=16%  Similarity=0.042  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3589999999999999999999999999999999754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.41  E-value=2e-07  Score=81.37  Aligned_cols=35  Identities=14%  Similarity=-0.016  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999999999999999999973

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.40  E-value=2e-07  Score=80.94  Aligned_cols=37  Identities=11%  Similarity=0.016  Sum_probs=34.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|.||||+-|.||+|||||||||.|+.-
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~   51 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE   51 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence            5589999999999999999999999999999999853

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2e-07  Score=81.48  Aligned_cols=37  Identities=8%  Similarity=-0.138  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|+|..|+||+.+.|+|++|||||||||+|+=+
T Consensus        18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4589999999999999999999999999999999854

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.40  E-value=2.1e-07  Score=79.88  Aligned_cols=36  Identities=8%  Similarity=0.050  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|..+++|+.++|+|++|||||||||+|+-
T Consensus        18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G   53 (220)
T TIGR02982        18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG   53 (220)
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            569999999999999999999999999999999974

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=2e-07  Score=83.66  Aligned_cols=36  Identities=11%  Similarity=-0.057  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||..|+||+.+.|+|++|||||||||+|+-
T Consensus        20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G   55 (286)
T PRK13646         20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA   55 (286)
T ss_pred             cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            359999999999999999999999999999999974

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.40  E-value=1.9e-07  Score=82.87  Aligned_cols=36  Identities=8%  Similarity=0.021  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|+||+++.|+|++|||||||||+|+=
T Consensus        20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831         20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            348999999999999999999999999999999974

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.1e-07  Score=81.96  Aligned_cols=36  Identities=8%  Similarity=-0.093  Sum_probs=34.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260         21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            489999999999999999999999999999999864

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.40  E-value=2.1e-07  Score=80.28  Aligned_cols=37  Identities=8%  Similarity=-0.074  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.++||+++.|+|++|||||||||+|+-+
T Consensus        15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251          15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3589999999999999999999999999999999743

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2e-07  Score=82.05  Aligned_cols=35  Identities=17%  Similarity=-0.047  Sum_probs=33.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999974

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.40  E-value=2.2e-07  Score=79.81  Aligned_cols=36  Identities=11%  Similarity=-0.105  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+.++|+|++|||||||||+|+-
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (223)
T TIGR03740        13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG   48 (223)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999874

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.40  E-value=2.3e-07  Score=79.32  Aligned_cols=37  Identities=19%  Similarity=0.048  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus        17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3589999999999999999999999999999999743

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.1e-07  Score=81.23  Aligned_cols=37  Identities=3%  Similarity=-0.094  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3589999999999999999999999999999999854

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.40  E-value=2.1e-07  Score=82.67  Aligned_cols=35  Identities=11%  Similarity=0.028  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|.||+++.|+||+|||||||||+|+=
T Consensus        26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G   60 (257)
T PRK11247         26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG   60 (257)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999999999999999999973

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.8e-07  Score=82.71  Aligned_cols=35  Identities=14%  Similarity=-0.015  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575         25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            59999999999999999999999999999999873

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=2.3e-07  Score=81.00  Aligned_cols=37  Identities=11%  Similarity=-0.002  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   53 (252)
T PRK14272         17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM   53 (252)
T ss_pred             EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3589999999999999999999999999999999753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.39  E-value=2.1e-07  Score=83.30  Aligned_cols=35  Identities=20%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus        15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG   49 (272)
T PRK13547         15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG   49 (272)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.39  E-value=2.3e-07  Score=82.53  Aligned_cols=38  Identities=16%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl   73 (269)
T cd03294          36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL   73 (269)
T ss_pred             CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35699999999999999999999999999999998743

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=2.3e-07  Score=82.96  Aligned_cols=35  Identities=17%  Similarity=-0.135  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|||-.|+||+++.|+|++|||||||||+|+=
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (279)
T PRK13650         21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG   55 (279)
T ss_pred             eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999874

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.39  E-value=2.4e-07  Score=79.55  Aligned_cols=36  Identities=25%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||+.+.|+||+|||||||||+|+=+
T Consensus        28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248          28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999999999999999999999743

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.39  E-value=2.1e-07  Score=81.18  Aligned_cols=36  Identities=11%  Similarity=-0.023  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|||-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            489999999999999999999999999999998753

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=2.4e-07  Score=83.19  Aligned_cols=36  Identities=19%  Similarity=-0.060  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+||+++.|+||+|||||||||+|+-
T Consensus        20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G   55 (287)
T PRK13641         20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA   55 (287)
T ss_pred             ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            459999999999999999999999999999999974

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.38  E-value=2.5e-07  Score=80.07  Aligned_cols=36  Identities=19%  Similarity=0.044  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (237)
T cd03252          15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR   50 (237)
T ss_pred             ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999973

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.38  E-value=2.4e-07  Score=83.78  Aligned_cols=36  Identities=11%  Similarity=-0.098  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|+||+++.|+||+|||||||||+|+=
T Consensus        17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G   52 (303)
T TIGR01288        17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG   52 (303)
T ss_pred             eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999974

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=2.5e-07  Score=80.84  Aligned_cols=37  Identities=8%  Similarity=-0.086  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+.+.|+|++|||||||||+|+=+
T Consensus        17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3589999999999999999999999999999999854

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.38  E-value=2.5e-07  Score=82.04  Aligned_cols=37  Identities=11%  Similarity=-0.049  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+.+.|+||+|||||||||+|+-+
T Consensus        26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl   62 (267)
T PRK15112         26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4599999999999999999999999999999998743

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.38  E-value=2.4e-07  Score=81.60  Aligned_cols=37  Identities=19%  Similarity=0.105  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||++++|+|++|||||||||+|+=+
T Consensus        34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (257)
T cd03288          34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM   70 (257)
T ss_pred             CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            3589999999999999999999999999999999754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2.4e-07  Score=82.25  Aligned_cols=36  Identities=11%  Similarity=-0.157  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|.||+++.|+|++|||||||||+|+-
T Consensus        14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638         14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            358999999999999999999999999999999874

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.38  E-value=2.6e-07  Score=81.17  Aligned_cols=36  Identities=14%  Similarity=-0.103  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   52 (254)
T PRK10418         17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI   52 (254)
T ss_pred             ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            489999999999999999999999999999999754

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.37  E-value=2.8e-07  Score=78.26  Aligned_cols=36  Identities=22%  Similarity=0.049  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999999999999999999743

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.37  E-value=2.6e-07  Score=81.57  Aligned_cols=36  Identities=22%  Similarity=0.110  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   50 (258)
T PRK13548         15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG   50 (258)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999974

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.6e-07  Score=81.13  Aligned_cols=37  Identities=19%  Similarity=0.068  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|..|+||+.+.|+|++|||||||||+|+=+
T Consensus        15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (255)
T PRK11231         15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL   51 (255)
T ss_pred             EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3599999999999999999999999999999999743

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.37  E-value=2.7e-07  Score=80.57  Aligned_cols=35  Identities=9%  Similarity=-0.090  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (247)
T TIGR00972        15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR   49 (247)
T ss_pred             eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999873

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.37  E-value=2.6e-07  Score=81.58  Aligned_cols=35  Identities=23%  Similarity=0.131  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus        18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G   52 (251)
T PRK09544         18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG   52 (251)
T ss_pred             eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999874

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=2.7e-07  Score=80.51  Aligned_cols=36  Identities=17%  Similarity=-0.009  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|.||+++.|+|++|||||||||+|+=+
T Consensus        17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            489999999999999999999999999999999843

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=2.8e-07  Score=82.42  Aligned_cols=36  Identities=17%  Similarity=-0.034  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus        34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G   69 (276)
T PRK14271         34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR   69 (276)
T ss_pred             EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            459999999999999999999999999999999974

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.9e-07  Score=82.16  Aligned_cols=35  Identities=11%  Similarity=-0.160  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|||..|+||+++.|+|++|||||||||+|+=
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (274)
T PRK13644         16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG   50 (274)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999974

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.37  E-value=2.7e-07  Score=79.15  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=36.1

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ...||+++|-.++|||-.++-||+|||||||||.++.|.
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            356999999999999999999999999999999998863

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.8e-07  Score=83.01  Aligned_cols=36  Identities=19%  Similarity=-0.098  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||..|+||+.+.|+|++|||||||||+|.-
T Consensus        20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (290)
T PRK13634         20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG   55 (290)
T ss_pred             ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            358999999999999999999999999999999864

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.36  E-value=2.9e-07  Score=78.87  Aligned_cols=35  Identities=11%  Similarity=0.011  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus        25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543         25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999974

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.8e-07  Score=82.15  Aligned_cols=35  Identities=9%  Similarity=-0.138  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||..|+||+++.|+|++|||||||||+|+=
T Consensus        16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G   50 (275)
T PRK13639         16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG   50 (275)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999999999999999863

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.36  E-value=2.9e-07  Score=81.14  Aligned_cols=37  Identities=14%  Similarity=-0.078  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+.++|+|++|||||||||+|+-+
T Consensus        17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   53 (262)
T PRK09984         17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL   53 (262)
T ss_pred             eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3589999999999999999999999999999999743

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.36  E-value=8.9e-07  Score=78.97  Aligned_cols=39  Identities=10%  Similarity=-0.121  Sum_probs=36.4

Q ss_pred             ccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          180 LEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       180 kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.....+|+|||-.+.+|+-+.++|++|||||||||.|+
T Consensus        36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlklia   74 (249)
T COG1134          36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA   74 (249)
T ss_pred             CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence            456688999999999999999999999999999999986

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=5.4e-07  Score=82.78  Aligned_cols=37  Identities=16%  Similarity=-0.047  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|++|+++.|+|++|||||||+|+|.=+
T Consensus        20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl   56 (326)
T PRK11022         20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL   56 (326)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            4699999999999999999999999999999998643

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=3.1e-07  Score=81.39  Aligned_cols=37  Identities=5%  Similarity=-0.131  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||+.+.|+|++|||||||||+|+=+
T Consensus        21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (261)
T PRK14263         21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM   57 (261)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            5699999999999999999999999999999999643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.35  E-value=2.9e-07  Score=86.06  Aligned_cols=36  Identities=8%  Similarity=0.004  Sum_probs=34.0

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...+|+|+|-.|+|||.+-+|||+||||||+||+|+
T Consensus        17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA   52 (352)
T COG3842          17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA   52 (352)
T ss_pred             CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence            356899999999999999999999999999999997

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.1e-07  Score=81.70  Aligned_cols=36  Identities=8%  Similarity=-0.094  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236         39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            589999999999999999999999999999999743

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=6.9e-07  Score=82.05  Aligned_cols=37  Identities=14%  Similarity=0.018  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|++|+++.|+|++|||||||+|+|.-+
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl   56 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV   56 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            4589999999999999999999999999999998743

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=3e-07  Score=82.61  Aligned_cols=36  Identities=17%  Similarity=-0.115  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|||..|+||+.+.|+|++|||||||||+|+=
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G   55 (287)
T PRK13637         20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG   55 (287)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            358999999999999999999999999999999974

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.35  E-value=3.3e-07  Score=79.76  Aligned_cols=35  Identities=11%  Similarity=-0.030  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus        14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   48 (237)
T TIGR00968        14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG   48 (237)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            59999999999999999999999999999999973

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.35  E-value=3.4e-07  Score=79.33  Aligned_cols=35  Identities=14%  Similarity=-0.066  Sum_probs=33.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus        14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g   48 (232)
T cd03300          14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG   48 (232)
T ss_pred             eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            59999999999999999999999999999999974

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.3e-07  Score=80.12  Aligned_cols=36  Identities=6%  Similarity=-0.027  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|.||+.+.|+||+|||||||||+|+=+
T Consensus        18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14249         18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM   53 (251)
T ss_pred             eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.35  E-value=3.6e-07  Score=77.62  Aligned_cols=35  Identities=11%  Similarity=0.004  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus        14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   48 (201)
T cd03231          14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG   48 (201)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999863

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.35  E-value=8.2e-07  Score=80.75  Aligned_cols=36  Identities=8%  Similarity=-0.115  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|+||+++.++||.|||||||+|+|+=
T Consensus        20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G   55 (306)
T PRK13537         20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG   55 (306)
T ss_pred             eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence            459999999999999999999999999999999863

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.35  E-value=3.6e-07  Score=81.15  Aligned_cols=37  Identities=24%  Similarity=0.074  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   61 (268)
T PRK10419         25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL   61 (268)
T ss_pred             eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999999999999999999998743

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.35  E-value=2.8e-07  Score=81.52  Aligned_cols=36  Identities=6%  Similarity=-0.066  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G   55 (265)
T PRK10253         20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR   55 (265)
T ss_pred             EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            359999999999999999999999999999999874

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=3.5e-07  Score=80.90  Aligned_cols=35  Identities=14%  Similarity=-0.043  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|||..|.||+++.|+|++|||||||||+|+
T Consensus        23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia   57 (257)
T PRK14246         23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN   57 (257)
T ss_pred             ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999999999999999999987

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=3.5e-07  Score=81.94  Aligned_cols=36  Identities=14%  Similarity=-0.172  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|++|+++.|+|++|||||||||+|+-
T Consensus        20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G   55 (279)
T PRK13635         20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG   55 (279)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            348999999999999999999999999999999874

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.33  E-value=3.7e-07  Score=81.22  Aligned_cols=37  Identities=8%  Similarity=-0.102  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl   73 (271)
T PRK14238         37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM   73 (271)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3589999999999999999999999999999999854

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.33  E-value=3.8e-07  Score=80.78  Aligned_cols=36  Identities=6%  Similarity=-0.153  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|||-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            589999999999999999999999999999999843

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=7.6e-07  Score=79.10  Aligned_cols=35  Identities=17%  Similarity=0.039  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.||++||-.|++||+-.++||.|||||||.++|.
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~   51 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM   51 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            57999999999999999999999999999999985

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=3.7e-07  Score=81.45  Aligned_cols=35  Identities=14%  Similarity=-0.122  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|..|+||+.+.|+|++|||||||||+|+=
T Consensus        19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (274)
T PRK13647         19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG   53 (274)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            48999999999999999999999999999999973

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.33  E-value=4.1e-07  Score=82.28  Aligned_cols=36  Identities=14%  Similarity=-0.092  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+++.|+||+|||||||||+|.-
T Consensus        15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G   50 (301)
T TIGR03522        15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG   50 (301)
T ss_pred             EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=4.1e-07  Score=80.42  Aligned_cols=35  Identities=6%  Similarity=-0.060  Sum_probs=33.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus        30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   64 (265)
T PRK14252         30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR   64 (265)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999999999999999999974

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=4.1e-07  Score=81.30  Aligned_cols=36  Identities=11%  Similarity=-0.125  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|||..|+||+++.|+|++|||||||||+|+=
T Consensus        23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   58 (280)
T PRK13633         23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNA   58 (280)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999973

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.31  E-value=3.7e-07  Score=80.63  Aligned_cols=35  Identities=9%  Similarity=-0.083  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++|+|||.-|.++.+|.++||+|||||||||+|=
T Consensus        20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             hhhhccCceeccCCceEEEECCCCcCHHHHHHHHH
Confidence            56899999999999999999999999999999974

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.31  E-value=5e-07  Score=73.53  Aligned_cols=35  Identities=17%  Similarity=0.031  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|++-.|.||++++|+|++|||||||||+|+-
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g   47 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG   47 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999864

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=4.4e-07  Score=83.86  Aligned_cols=37  Identities=22%  Similarity=0.115  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus        18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl   54 (343)
T PRK11153         18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL   54 (343)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4699999999999999999999999999999998743

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=4.5e-07  Score=81.50  Aligned_cols=37  Identities=11%  Similarity=-0.068  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   88 (285)
T PRK14254         52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM   88 (285)
T ss_pred             EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3589999999999999999999999999999999843

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.30  E-value=9.1e-07  Score=81.46  Aligned_cols=37  Identities=14%  Similarity=-0.059  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|++|+.+.|+|++|||||||+|+|+-+
T Consensus        29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl   65 (330)
T PRK09473         29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL   65 (330)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence            4589999999999999999999999999999999743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.30  E-value=4.9e-07  Score=80.71  Aligned_cols=36  Identities=6%  Similarity=0.004  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|.+||.+-|+||+|||||||||+|+=
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            568999999999999999999999999999999873

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.30  E-value=3.3e-07  Score=81.43  Aligned_cols=35  Identities=14%  Similarity=0.004  Sum_probs=32.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+| .++||+++.|+||+|||||||||+|+-+
T Consensus        15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl   49 (255)
T cd03236          15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGK   49 (255)
T ss_pred             hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999 7999999999999999999999999743

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=4.9e-07  Score=81.29  Aligned_cols=35  Identities=20%  Similarity=-0.081  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|||..|.+|+.+.|+|++|||||||||+|+=
T Consensus        20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G   54 (288)
T PRK13643         20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG   54 (288)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            59999999999999999999999999999999974

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=5.3e-07  Score=79.64  Aligned_cols=36  Identities=17%  Similarity=-0.009  Sum_probs=33.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (261)
T PRK14258         21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM   56 (261)
T ss_pred             eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999854

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=5.3e-07  Score=80.83  Aligned_cols=36  Identities=19%  Similarity=0.032  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|||-.|+||+++.|+|++|||||||||+|+-+
T Consensus        20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl   55 (283)
T PRK13636         20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI   55 (283)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            489999999999999999999999999999999744

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.29  E-value=5.4e-07  Score=79.21  Aligned_cols=37  Identities=16%  Similarity=0.012  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   54 (257)
T PRK10619         18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL   54 (257)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3599999999999999999999999999999998743

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=5.8e-07  Score=80.22  Aligned_cols=35  Identities=14%  Similarity=-0.095  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|||..|.||+.+.|+|++|||||||+|+|+-
T Consensus        18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G   52 (277)
T PRK13652         18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG   52 (277)
T ss_pred             ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999974

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=5.7e-07  Score=83.73  Aligned_cols=36  Identities=3%  Similarity=-0.070  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus        17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG   52 (356)
T PRK11650         17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG   52 (356)
T ss_pred             CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence            458999999999999999999999999999999974

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=6.1e-07  Score=81.40  Aligned_cols=36  Identities=17%  Similarity=-0.048  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus        59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl   94 (305)
T PRK14264         59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM   94 (305)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.27  E-value=6e-07  Score=83.48  Aligned_cols=36  Identities=11%  Similarity=-0.012  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|..|+||+++.|+||+|||||||||+|+=
T Consensus        17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG   52 (353)
T TIGR03265        17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG   52 (353)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            458999999999999999999999999999999974

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=6.6e-07  Score=81.49  Aligned_cols=37  Identities=19%  Similarity=0.033  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||..|+||+.+.|+|++|||||||||+|.=+
T Consensus        20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl   56 (305)
T PRK13651         20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL   56 (305)
T ss_pred             ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3589999999999999999999999999999999743

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.27  E-value=7.9e-07  Score=70.11  Aligned_cols=34  Identities=12%  Similarity=-0.151  Sum_probs=31.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..|++++-.+++|+.++++||+||||||||+++.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            4799999999999999999999999999999964

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=6.5e-07  Score=82.10  Aligned_cols=36  Identities=8%  Similarity=-0.087  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||..|+||+.+.|+|++|||||||||+|+=
T Consensus        39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~G   74 (320)
T PRK13631         39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG   74 (320)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999874

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=7.4e-07  Score=79.82  Aligned_cols=36  Identities=17%  Similarity=-0.053  Sum_probs=33.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|||..|.||+++.|+|++|||||||||+|+=+
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~   56 (282)
T PRK13640         21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL   56 (282)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            489999999999999999999999999999998743

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=7.4e-07  Score=79.54  Aligned_cols=37  Identities=19%  Similarity=-0.066  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|+||+.+.|+|++||||||||++|+-+
T Consensus        20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (277)
T PRK13642         20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL   56 (277)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3589999999999999999999999999999998743

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.24  E-value=8.2e-07  Score=74.96  Aligned_cols=34  Identities=6%  Similarity=0.085  Sum_probs=30.8

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++ ++|-.|+||+++.|+|++|||||||||+|+=+
T Consensus        16 l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         16 LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            45 49999999999999999999999999999743

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.24  E-value=7.8e-07  Score=83.10  Aligned_cols=36  Identities=6%  Similarity=-0.065  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus        16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG   51 (369)
T PRK11000         16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   51 (369)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            358999999999999999999999999999999974

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.24  E-value=7.9e-07  Score=83.48  Aligned_cols=36  Identities=6%  Similarity=-0.041  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++|+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus        27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG   62 (375)
T PRK09452         27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG   62 (375)
T ss_pred             eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence            348999999999999999999999999999999974

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.24  E-value=7.1e-07  Score=84.63  Aligned_cols=36  Identities=11%  Similarity=-0.025  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+||+++.++||+|||||||||+|+=
T Consensus        16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG   51 (402)
T PRK09536         16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING   51 (402)
T ss_pred             EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence            459999999999999999999999999999999974

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.22  E-value=8.6e-07  Score=82.33  Aligned_cols=37  Identities=22%  Similarity=0.108  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|+||+++.|+|++|||||||||+|.-+
T Consensus        18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl   54 (343)
T TIGR02314        18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   54 (343)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4699999999999999999999999999999999753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.21  E-value=9.1e-07  Score=82.66  Aligned_cols=36  Identities=8%  Similarity=-0.033  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|.+|+++.|+||+|||||||||+|+-
T Consensus        18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   53 (362)
T TIGR03258        18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG   53 (362)
T ss_pred             eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999974

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.21  E-value=9.3e-07  Score=82.23  Aligned_cols=36  Identities=8%  Similarity=0.017  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+.+.|+||+|||||||||+|+=
T Consensus        19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG   54 (351)
T PRK11432         19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG   54 (351)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence            358999999999999999999999999999999863

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=9.9e-07  Score=81.27  Aligned_cols=36  Identities=14%  Similarity=-0.025  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|+|+|-.|+||+.+.|+||+||||||||++|+-+
T Consensus        96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~  131 (329)
T PRK14257         96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL  131 (329)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            489999999999999999999999999999999743

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.20  E-value=1e-06  Score=82.00  Aligned_cols=36  Identities=11%  Similarity=0.014  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++|+|+|-.|++|+.+.|+||+|||||||||+|+-
T Consensus        15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG   50 (353)
T PRK10851         15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG   50 (353)
T ss_pred             eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999974

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.20  E-value=9.7e-07  Score=84.98  Aligned_cols=37  Identities=16%  Similarity=0.115  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|||..|++|+++.|+||.|||||||||+|+=+
T Consensus        18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl   54 (510)
T PRK09700         18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI   54 (510)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            3599999999999999999999999999999998743

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.19  E-value=1e-06  Score=84.28  Aligned_cols=36  Identities=14%  Similarity=-0.177  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|-.|.||+.+.|+||.|||||||||+|+-+
T Consensus        17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~   52 (490)
T PRK10938         17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE   52 (490)
T ss_pred             eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            499999999999999999999999999999999754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.19  E-value=1.2e-06  Score=84.29  Aligned_cols=36  Identities=17%  Similarity=0.049  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|++|+.+.|+||.|||||||||+|+-
T Consensus        18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (506)
T PRK13549         18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG   53 (506)
T ss_pred             eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999974

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.19  E-value=1.2e-06  Score=81.10  Aligned_cols=36  Identities=8%  Similarity=-0.095  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|||-.|.||+++.|+||.|||||||||+|.=
T Consensus        54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G   89 (340)
T PRK13536         54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG   89 (340)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            458999999999999999999999999999999864

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.17  E-value=1.3e-06  Score=82.11  Aligned_cols=37  Identities=11%  Similarity=-0.024  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|++|+++.|+||+|||||||||+|+-+
T Consensus        32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl   68 (377)
T PRK11607         32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF   68 (377)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3589999999999999999999999999999999743

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.16  E-value=1.4e-06  Score=77.23  Aligned_cols=37  Identities=19%  Similarity=-0.023  Sum_probs=34.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|++|+.++++|++|||||||+|.|.-+
T Consensus        17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL   53 (235)
T COG1122          17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL   53 (235)
T ss_pred             ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence            5689999999999999999999999999999998754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.16  E-value=1.4e-06  Score=84.18  Aligned_cols=36  Identities=11%  Similarity=0.061  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|++|+++.|+||.|||||||||+|+=
T Consensus        24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G   59 (510)
T PRK15439         24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG   59 (510)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999974

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.16  E-value=1.4e-06  Score=83.73  Aligned_cols=37  Identities=16%  Similarity=0.039  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|.+|+++.|+||.|||||||||+|+-+
T Consensus        17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~   53 (501)
T PRK10762         17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI   53 (501)
T ss_pred             eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999999743

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=2.7e-06  Score=84.71  Aligned_cols=36  Identities=11%  Similarity=0.007  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|.||+.+.|+||.|||||||||+|+=
T Consensus        14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G   49 (638)
T PRK10636         14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN   49 (638)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999974

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.15  E-value=1.4e-06  Score=84.07  Aligned_cols=37  Identities=11%  Similarity=-0.006  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|++|+++.|+||+|||||||||+|+-+
T Consensus       297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl  333 (520)
T TIGR03269       297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV  333 (520)
T ss_pred             ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999999999999999999999743

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.15  E-value=1.6e-06  Score=79.98  Aligned_cols=36  Identities=8%  Similarity=-0.121  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|++|+++.|+|++|||||||+|+|+-
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G   69 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG   69 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            569999999999999999999999999999999874

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.15  E-value=5.2e-06  Score=80.86  Aligned_cols=36  Identities=8%  Similarity=-0.060  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+.++|.|+.|||||||+|.|.=
T Consensus       356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g  391 (582)
T PRK11176        356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR  391 (582)
T ss_pred             CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            359999999999999999999999999999999863

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.15  E-value=1.6e-06  Score=79.77  Aligned_cols=36  Identities=17%  Similarity=0.052  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++|+++.|+|++|||||||+|+|.-
T Consensus        28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g   63 (327)
T PRK11308         28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM   63 (327)
T ss_pred             eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            469999999999999999999999999999999864

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.15  E-value=2.7e-06  Score=83.35  Aligned_cols=34  Identities=21%  Similarity=0.043  Sum_probs=32.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.++|.||+|||||||+|.|.
T Consensus       354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~  387 (574)
T PRK11160        354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT  387 (574)
T ss_pred             cceecceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999999999999999999999985

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.15  E-value=1.5e-06  Score=84.79  Aligned_cols=37  Identities=16%  Similarity=0.054  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|||-.|.||+++.|+||.|||||||||+|+-+
T Consensus        20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~   56 (556)
T PRK11819         20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV   56 (556)
T ss_pred             CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4589999999999999999999999999999999743

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.14  E-value=1.6e-06  Score=83.15  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|++|+++.|+||.|||||||||+|+=
T Consensus        14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G   49 (500)
T TIGR02633        14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG   49 (500)
T ss_pred             eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999974

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.14  E-value=1.7e-06  Score=83.83  Aligned_cols=37  Identities=16%  Similarity=-0.029  Sum_probs=34.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|||-.|++|+++.|+||.|||||||||+|+-+
T Consensus       299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl  335 (529)
T PRK15134        299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL  335 (529)
T ss_pred             ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4699999999999999999999999999999999743

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.14  E-value=3e-06  Score=81.64  Aligned_cols=34  Identities=18%  Similarity=0.067  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus       336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~  369 (529)
T TIGR02857       336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL  369 (529)
T ss_pred             ccccceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999999999999999999999985

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.6e-06  Score=83.35  Aligned_cols=36  Identities=14%  Similarity=-0.024  Sum_probs=33.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .||+|+|..|+||+++.|+|+.|||||||||+|+=+
T Consensus        18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   53 (501)
T PRK11288         18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN   53 (501)
T ss_pred             EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            599999999999999999999999999999999743

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.13  E-value=1.7e-06  Score=84.28  Aligned_cols=36  Identities=17%  Similarity=0.040  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|..|.+|+++.|+||.|||||||||+|+=
T Consensus        18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G   53 (552)
T TIGR03719        18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG   53 (552)
T ss_pred             CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            359999999999999999999999999999999974

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.8e-06  Score=83.61  Aligned_cols=35  Identities=9%  Similarity=-0.129  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|+|-.|+||+.+.|+||.|||||||||+|+=
T Consensus        15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G   49 (530)
T PRK15064         15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG   49 (530)
T ss_pred             EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999973

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=5e-06  Score=81.36  Aligned_cols=36  Identities=14%  Similarity=0.020  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++||++||+.|..|+-+.+.|+|||||||+||+||=
T Consensus       365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr  400 (591)
T KOG0057|consen  365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR  400 (591)
T ss_pred             CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence            459999999999999999999999999999999974

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.12  E-value=1.7e-06  Score=82.89  Aligned_cols=36  Identities=14%  Similarity=-0.015  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|+|-.|+||+++.|+||.|||||||||+|+=
T Consensus       273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G  308 (490)
T PRK10938        273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG  308 (490)
T ss_pred             eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            459999999999999999999999999999999974

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.12  E-value=1.9e-06  Score=80.12  Aligned_cols=34  Identities=9%  Similarity=-0.020  Sum_probs=32.8

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+|+|-.|++||...+|||+|||||||||+|+=
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            8999999999999999999999999999999974

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.12  E-value=1.9e-06  Score=82.70  Aligned_cols=35  Identities=23%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus       273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~  307 (500)
T TIGR02633       273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF  307 (500)
T ss_pred             ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence            45999999999999999999999999999999997

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.12  E-value=1.8e-06  Score=81.44  Aligned_cols=38  Identities=8%  Similarity=-0.066  Sum_probs=34.9

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ....+|+|+|-.|+||+++.|+|++|||||||||+|.=
T Consensus        35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~G   72 (382)
T TIGR03415        35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNG   72 (382)
T ss_pred             CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            34668999999999999999999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.12  E-value=2e-06  Score=79.29  Aligned_cols=37  Identities=11%  Similarity=0.010  Sum_probs=33.9

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ....++||+-.|+.||++.||||+||||||+|++|+=
T Consensus        14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG   50 (345)
T COG1118          14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG   50 (345)
T ss_pred             cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence            3557889999999999999999999999999999974

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.12  E-value=2e-06  Score=83.33  Aligned_cols=37  Identities=14%  Similarity=-0.063  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|+|-.|.+|+++.|+||.|||||||||+|+-+
T Consensus        22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~   58 (529)
T PRK15134         22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL   58 (529)
T ss_pred             eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4599999999999999999999999999999999754

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.11  E-value=2.5e-06  Score=73.50  Aligned_cols=40  Identities=20%  Similarity=0.112  Sum_probs=36.5

Q ss_pred             CccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          179 SLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       179 ~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ....+.+||++|+-+|+|||-+.+.||+||||||||-+|+
T Consensus        18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlA   57 (228)
T COG4181          18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA   57 (228)
T ss_pred             CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHh
Confidence            4456789999999999999999999999999999998876

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.11  E-value=3.8e-06  Score=83.65  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|.|++|||||||+|.|.
T Consensus       466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~  500 (686)
T TIGR03797       466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL  500 (686)
T ss_pred             ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999985

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.11  E-value=2.1e-06  Score=76.78  Aligned_cols=37  Identities=11%  Similarity=-0.059  Sum_probs=34.4

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+.||+|++-.|++||.+.|+|++|||||||||+|.-
T Consensus        20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G   56 (263)
T COG1127          20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG   56 (263)
T ss_pred             CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc
Confidence            4679999999999999999999999999999999864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.10  E-value=2e-06  Score=72.87  Aligned_cols=35  Identities=17%  Similarity=0.066  Sum_probs=31.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+ -.|+||+++.|+||.|||||||||+|+=
T Consensus        13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            4578885 6999999999999999999999999863

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.09  E-value=2.4e-06  Score=82.50  Aligned_cols=37  Identities=16%  Similarity=-0.006  Sum_probs=34.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.|.+|+++.|+||.|||||||||+|+-+
T Consensus        13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3589999999999999999999999999999999865

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.09  E-value=2.4e-06  Score=82.29  Aligned_cols=36  Identities=25%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|||-.|++|+++.|+|+.|||||||||+|+=
T Consensus       275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G  310 (506)
T PRK13549        275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG  310 (506)
T ss_pred             cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999973

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=2.5e-06  Score=82.60  Aligned_cols=36  Identities=8%  Similarity=-0.024  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus       332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G  367 (530)
T PRK15064        332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG  367 (530)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999873

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.08  E-value=2.5e-06  Score=82.24  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=32.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.+++.||+|||||||+|.|.
T Consensus       349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~  382 (529)
T TIGR02868       349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT  382 (529)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3899999999999999999999999999999885

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.08  E-value=5.3e-06  Score=80.81  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.+.||+||||||++|.|.
T Consensus       342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~  376 (567)
T COG1132         342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL  376 (567)
T ss_pred             CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999999999999999999885

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.07  E-value=2.4e-06  Score=84.85  Aligned_cols=36  Identities=6%  Similarity=-0.129  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||..|.||+.+.|+||.|||||||||+|+=
T Consensus        16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG   51 (635)
T PRK11147         16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG   51 (635)
T ss_pred             ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            459999999999999999999999999999999864

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.07  E-value=2.6e-06  Score=74.76  Aligned_cols=36  Identities=11%  Similarity=-0.001  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|+||+.+.||||+||||||+|+.++=
T Consensus        18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence            669999999999999999999999999999999873

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.07  E-value=2.6e-06  Score=84.76  Aligned_cols=36  Identities=19%  Similarity=-0.050  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||..|+||+++.|+||.|||||||||+|+=
T Consensus       325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G  360 (638)
T PRK10636        325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG  360 (638)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            469999999999999999999999999999999974

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.06  E-value=2.8e-06  Score=81.81  Aligned_cols=35  Identities=14%  Similarity=0.015  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|++|+++.|+||.|||||||||+|+-
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G  311 (510)
T PRK09700        277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG  311 (510)
T ss_pred             CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999999999999999973

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.06  E-value=2.7e-06  Score=82.96  Aligned_cols=36  Identities=14%  Similarity=0.037  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus       335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G  370 (552)
T TIGR03719       335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG  370 (552)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            469999999999999999999999999999999863

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.05  E-value=7.3e-06  Score=79.96  Aligned_cols=35  Identities=6%  Similarity=-0.099  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|+||+.+.+.||+|||||||+|.|.
T Consensus       355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~  389 (555)
T TIGR01194       355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC  389 (555)
T ss_pred             CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999985

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.05  E-value=2.8e-06  Score=80.54  Aligned_cols=36  Identities=11%  Similarity=-0.051  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus        41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G   76 (400)
T PRK10070         41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR   76 (400)
T ss_pred             eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence            347999999999999999999999999999999874

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.04  E-value=3.2e-06  Score=82.59  Aligned_cols=36  Identities=14%  Similarity=0.028  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|||-.|+||+++.|+|+.|||||||||+|+-
T Consensus       337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  372 (556)
T PRK11819        337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG  372 (556)
T ss_pred             eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            459999999999999999999999999999999973

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.03  E-value=3.9e-06  Score=75.93  Aligned_cols=36  Identities=6%  Similarity=-0.022  Sum_probs=33.7

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.+++|||-.|.+||++.++||+||||||+||.|=
T Consensus        13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN   48 (309)
T COG1125          13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN   48 (309)
T ss_pred             CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence            467999999999999999999999999999999874

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.02  E-value=4.6e-06  Score=74.52  Aligned_cols=38  Identities=18%  Similarity=-0.034  Sum_probs=34.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...+|+|||-.|.+||...++|++|||||||.++|+-+
T Consensus        19 ~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          19 AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence            34799999999999999999999999999999998743

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.02  E-value=3.7e-06  Score=80.87  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=32.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus       266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G  300 (501)
T PRK10762        266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG  300 (501)
T ss_pred             CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence            47999999999999999999999999999999873

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.01  E-value=3.7e-06  Score=83.45  Aligned_cols=36  Identities=6%  Similarity=-0.024  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++||+|||-.|+||+++.|+||.|||||||||+|+=
T Consensus       332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G  367 (635)
T PRK11147        332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG  367 (635)
T ss_pred             eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            469999999999999999999999999999999973

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.01  E-value=8e-06  Score=81.48  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|+||+.+.+.|++|||||||+|.|+
T Consensus       479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~  512 (694)
T TIGR03375       479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL  512 (694)
T ss_pred             cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.01  E-value=4e-06  Score=82.32  Aligned_cols=37  Identities=14%  Similarity=-0.078  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|..|+||+++.|+|++|||||||||+|+=+
T Consensus        37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL   73 (549)
T PRK13545         37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV   73 (549)
T ss_pred             ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4699999999999999999999999999999998743

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.00  E-value=4.1e-06  Score=80.59  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|+||+++.|+||.|||||||||+|.
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~  300 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLY  300 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHc
Confidence            4899999999999999999999999999999986

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.00  E-value=4.1e-06  Score=81.72  Aligned_cols=34  Identities=9%  Similarity=-0.022  Sum_probs=32.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus       364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~  397 (588)
T PRK11174        364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL  397 (588)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999999999999999999884

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.00  E-value=4.5e-06  Score=81.09  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus       353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~  387 (576)
T TIGR02204       353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL  387 (576)
T ss_pred             CccccceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence            35899999999999999999999999999999985

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.00  E-value=4.1e-06  Score=83.08  Aligned_cols=37  Identities=16%  Similarity=-0.071  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|++|+++.|+|++|||||||||+|+-+
T Consensus        29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl   65 (623)
T PRK10261         29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL   65 (623)
T ss_pred             eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            4599999999999999999999999999999999754

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.99  E-value=4.5e-06  Score=82.76  Aligned_cols=36  Identities=17%  Similarity=-0.028  Sum_probs=34.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++|+++.|+|++|||||||||+|+=
T Consensus       337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G  372 (623)
T PRK10261        337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR  372 (623)
T ss_pred             eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            469999999999999999999999999999999974

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.99  E-value=8.5e-06  Score=82.39  Aligned_cols=34  Identities=15%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|+|||.+.+.|++|||||||+|.|.
T Consensus       487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~  520 (709)
T COG2274         487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL  520 (709)
T ss_pred             chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999999999999999999999874

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.99  E-value=5.4e-06  Score=72.88  Aligned_cols=39  Identities=13%  Similarity=0.036  Sum_probs=35.3

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.+.++|||..++.|++|.|||+.||||||+||+|+-+.
T Consensus        14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL   52 (245)
T COG4555          14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL   52 (245)
T ss_pred             HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc
Confidence            344789999999999999999999999999999998653

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.98  E-value=4.8e-06  Score=79.83  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|||-.|++|+++.|+|+.|||||||||+|+
T Consensus       262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  295 (491)
T PRK10982        262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLF  295 (491)
T ss_pred             cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHc
Confidence            5899999999999999999999999999999997

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.97  E-value=5.1e-06  Score=80.77  Aligned_cols=34  Identities=9%  Similarity=-0.116  Sum_probs=32.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|+||+.++|.||+|||||||+|.|.
T Consensus       337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~  370 (547)
T PRK10522        337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT  370 (547)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999999999999999999986

>PLN03073 ABC transporter F family; Provisional

Probab=97.97  E-value=8.4e-06  Score=82.48  Aligned_cols=35  Identities=9%  Similarity=-0.139  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|.+|+.+.|+||.|||||||||.|+
T Consensus       190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~  224 (718)
T PLN03073        190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA  224 (718)
T ss_pred             CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence            34999999999999999999999999999999996

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.96  E-value=5.8e-06  Score=83.04  Aligned_cols=35  Identities=20%  Similarity=0.111  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|+||+.++|.||+|||||||+|.|.
T Consensus       494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~  528 (711)
T TIGR00958       494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ  528 (711)
T ss_pred             CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999999999999999999986

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.95  E-value=6.1e-06  Score=82.52  Aligned_cols=34  Identities=21%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.+.|.|++|||||||+|.|.
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~  521 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV  521 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999999999999999999999985

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.94  E-value=6.2e-06  Score=82.39  Aligned_cols=35  Identities=11%  Similarity=-0.014  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|+||+.+.|.|++|||||||+|.|.
T Consensus       492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~  526 (710)
T TIGR03796       492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA  526 (710)
T ss_pred             CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.94  E-value=6.3e-06  Score=79.62  Aligned_cols=35  Identities=9%  Similarity=0.016  Sum_probs=32.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|||-.|++|+++.|+||.|||||||||+|+=
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  311 (510)
T PRK15439        277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYG  311 (510)
T ss_pred             CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            37999999999999999999999999999999973

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.93  E-value=2.9e-06  Score=75.72  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=33.6

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      -...|+|||-.++|||++.|.||.|||||||+++|.
T Consensus        16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit   51 (250)
T COG0411          16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT   51 (250)
T ss_pred             CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
Confidence            367899999999999999999999999999999875

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.93  E-value=6.7e-06  Score=80.36  Aligned_cols=35  Identities=20%  Similarity=0.044  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|.||+|||||||+|.|.
T Consensus       328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~  362 (569)
T PRK10789        328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ  362 (569)
T ss_pred             CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999986

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.93  E-value=7.2e-06  Score=79.59  Aligned_cols=35  Identities=11%  Similarity=-0.066  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++|+|+|-.++||+.+.|.|++|||||||+|.|+
T Consensus       331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~  365 (544)
T TIGR01842       331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIV  365 (544)
T ss_pred             ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.93  E-value=6.9e-06  Score=80.33  Aligned_cols=34  Identities=21%  Similarity=0.002  Sum_probs=32.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.++||+.++|.|++|||||||+|.|.
T Consensus       349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~  382 (588)
T PRK13657        349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ  382 (588)
T ss_pred             ceecceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999999999999999999985

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.92  E-value=1.8e-05  Score=77.12  Aligned_cols=36  Identities=19%  Similarity=0.009  Sum_probs=33.5

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.||+|+|..+.||+-+.|+||+|||||||.|.|.
T Consensus       348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv  383 (580)
T COG4618         348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLV  383 (580)
T ss_pred             CCcceecceeEecCCceEEEECCCCccHHHHHHHHH
Confidence            367999999999999999999999999999999864

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.92  E-value=7.5e-06  Score=79.35  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus       346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~  379 (571)
T TIGR02203       346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIP  379 (571)
T ss_pred             ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence            5899999999999999999999999999999986

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.91  E-value=7.7e-06  Score=79.98  Aligned_cols=34  Identities=9%  Similarity=-0.087  Sum_probs=32.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|+|-.|+||+.++|.|++|||||||+|.|+
T Consensus       355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~  388 (592)
T PRK10790        355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM  388 (592)
T ss_pred             ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999999999999999999985

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=97.91  E-value=3.2e-05  Score=75.60  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|||.++.||..+.+.||+|+||||+++.||=.
T Consensus       551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf  587 (790)
T KOG0056|consen  551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF  587 (790)
T ss_pred             CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence            5689999999999999999999999999999999843

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.90  E-value=1.6e-05  Score=86.12  Aligned_cols=37  Identities=16%  Similarity=-0.042  Sum_probs=34.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|||-.|+||+.+.|.||+|||||||+++|+=+
T Consensus      1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl 1268 (1490)
T TIGR01271      1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL 1268 (1490)
T ss_pred             cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            3589999999999999999999999999999999854

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=97.89  E-value=8.1e-06  Score=82.60  Aligned_cols=35  Identities=3%  Similarity=-0.156  Sum_probs=33.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||-.|++|+.+.|+||+|||||||||+|+=
T Consensus       523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G  557 (718)
T PLN03073        523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG  557 (718)
T ss_pred             eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            59999999999999999999999999999999973

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=97.85  E-value=1.1e-05  Score=80.64  Aligned_cols=35  Identities=14%  Similarity=-0.001  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+.++|+||+|||||||+|+|+=
T Consensus       466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G  500 (659)
T TIGR00954       466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE  500 (659)
T ss_pred             eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            59999999999999999999999999999999863

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=1.7e-05  Score=79.57  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      +...||+|+|-.|+||+.|.+.||+||||||+...|
T Consensus       479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL  514 (716)
T KOG0058|consen  479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLL  514 (716)
T ss_pred             CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHH
Confidence            346799999999999999999999999999987654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.84  E-value=2.3e-05  Score=85.02  Aligned_cols=35  Identities=14%  Similarity=-0.059  Sum_probs=33.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+||+.+.|.||.|||||||+++|+=
T Consensus      1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957      1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            48999999999999999999999999999999873

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=97.83  E-value=2.3e-05  Score=85.21  Aligned_cols=35  Identities=14%  Similarity=-0.101  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||-.|+||+.+.|.||+|||||||+++|+=
T Consensus      1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr 1358 (1560)
T PTZ00243       1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR 1358 (1560)
T ss_pred             ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            49999999999999999999999999999999863

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.83  E-value=1.3e-05  Score=79.97  Aligned_cols=37  Identities=14%  Similarity=0.054  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+|+|-.|+||+.++|+|++|||||||||+|+-+
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   57 (648)
T PRK10535         21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL   57 (648)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4599999999999999999999999999999998743

>PLN03232 ABC transporter C family member; Provisional

Probab=97.83  E-value=2.4e-05  Score=84.73  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|+||+.+.|.||+|||||||++.|+
T Consensus      1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~ 1283 (1495)
T PLN03232       1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF 1283 (1495)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999999999999999999987

>PRK13409 putative ATPase RIL; Provisional

Probab=97.82  E-value=9.6e-06  Score=80.29  Aligned_cols=35  Identities=17%  Similarity=-0.073  Sum_probs=32.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|++++ .++||+++.|+||.|||||||||+|+=
T Consensus        87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G  121 (590)
T PRK13409         87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSG  121 (590)
T ss_pred             ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999 999999999999999999999999974

>PRK13409 putative ATPase RIL; Provisional

Probab=97.81  E-value=1.2e-05  Score=79.52  Aligned_cols=34  Identities=15%  Similarity=-0.077  Sum_probs=32.1

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|+++|+.|++||++.|+|+.|||||||||+|+=
T Consensus       354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~G  387 (590)
T PRK13409        354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG  387 (590)
T ss_pred             EEEecceEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999999999999999973

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.81  E-value=1.7e-05  Score=68.37  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=36.4

Q ss_pred             ccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          180 LEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       180 kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-...++|+|+|-.++.||-+.+=||+|||||||||+|+-
T Consensus        20 ~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa   59 (235)
T COG4778          20 GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA   59 (235)
T ss_pred             CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh
Confidence            3456889999999999999999999999999999999973

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.81  E-value=1.4e-05  Score=78.55  Aligned_cols=34  Identities=18%  Similarity=-0.100  Sum_probs=32.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|+||+.+.+.||+|||||||+|.|.
T Consensus       349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~  382 (585)
T TIGR01192       349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ  382 (585)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence            4899999999999999999999999999999885

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03130 ABC transporter C family member; Provisional

Probab=97.80  E-value=2.6e-05  Score=85.06  Aligned_cols=35  Identities=17%  Similarity=0.032  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+|-.|+|||.+.|.||+|||||||++.|+=
T Consensus      1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130       1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999999999999999873

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.79  E-value=1.6e-05  Score=79.39  Aligned_cols=35  Identities=14%  Similarity=0.010  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|+||+.+.|.|++|||||||+|.|+
T Consensus       470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~  504 (694)
T TIGR01846       470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ  504 (694)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=2.3e-05  Score=68.03  Aligned_cols=38  Identities=13%  Similarity=0.052  Sum_probs=35.2

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...|+.++|..+.|||++-|-||.||||||||++|+=+
T Consensus        14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL   51 (209)
T COG4133          14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL   51 (209)
T ss_pred             cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc
Confidence            45799999999999999999999999999999999754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.77  E-value=3.3e-05  Score=66.73  Aligned_cols=41  Identities=12%  Similarity=0.020  Sum_probs=37.4

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      +..|.+|++-.+++|++++|.||.|+|||||||++.++++.
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l   55 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM   55 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999887754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=3.3e-05  Score=75.92  Aligned_cols=34  Identities=12%  Similarity=0.108  Sum_probs=32.2

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..++|+|-.++||+.|.++|++|||||||+.+|.
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~  368 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL  368 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence            5789999999999999999999999999999885

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.9e-05  Score=77.28  Aligned_cols=37  Identities=14%  Similarity=-0.015  Sum_probs=34.0

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.++|+|+|-.++|||-+.|+||+||||||+++.|.
T Consensus       349 ~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~  385 (573)
T COG4987         349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA  385 (573)
T ss_pred             CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence            3456999999999999999999999999999999875

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.75  E-value=1.9e-05  Score=72.14  Aligned_cols=41  Identities=15%  Similarity=-0.025  Sum_probs=36.3

Q ss_pred             ccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          180 LEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       180 kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +++.....+|+|--|.||++++++|+.||||||.||.|.=+
T Consensus        33 k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl   73 (325)
T COG4586          33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL   73 (325)
T ss_pred             hhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence            34456689999999999999999999999999999998743

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=97.71  E-value=6.6e-05  Score=72.15  Aligned_cols=117  Identities=18%  Similarity=0.164  Sum_probs=68.7

Q ss_pred             ccccCCChhhhhHHHHHHHhhcccCHHHHHHHHHHhhhhcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhh
Q 037424           90 INVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMIS  169 (231)
Q Consensus        90 vdv~~L~~~~~~~l~~~l~~~~~~D~~~~L~~lr~r~drvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~  169 (231)
                      +-++-| .+|.+..++|+++...--....|.+-|-|  .+  ++=.-.+.|+|++-.-.. .-..+.   +.|.+...++
T Consensus       315 vl~~pl-teEa~r~i~rf~~~d~~A~~h~L~~pRyr--~v--e~L~~p~~~~~v~k~faS-~ld~~~---lp~e~~~Ile  385 (593)
T COG2401         315 VLPTPL-TEEAKRYIDRFVGEDPMAYPHLLLAPRYR--MV--EKLEGPIKFKNVTKTFAS-ELDIKG---LPNEFQDILE  385 (593)
T ss_pred             eeccch-hHHHHHHHHHHhccCccccccceeccccc--cc--cccCCccccceeeeeeee-eeeccc---CChHHHHHHH
Confidence            333333 35667778888865433333333222222  11  111112445555443322 122223   3344444333


Q ss_pred             hcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          170 VLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       170 ~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                          .++..++......|+|+|-.||||+...|.|++||||||||+.|.=
T Consensus       386 ----SFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G  431 (593)
T COG2401         386 ----SFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG  431 (593)
T ss_pred             ----HhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence                3444566778889999999999999999999999999999998853

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.70  E-value=4.8e-05  Score=75.58  Aligned_cols=35  Identities=14%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..|++.+-.|+||+=+||.|++|+|||||||+|+=
T Consensus       407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG  441 (604)
T COG4178         407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG  441 (604)
T ss_pred             eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence            57899999999999999999999999999999974

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.68  E-value=3.7e-05  Score=55.09  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=24.2

Q ss_pred             EEeC-CeEEEEecCCCCCchhHHHHHHHHH
Q 037424          193 ILKP-GSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       193 iiKP-GeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -+.| |.+|+|.|+.||||||+|.++..+.
T Consensus        18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             eecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444 4699999999999999999997764

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.68  E-value=2.2e-05  Score=76.28  Aligned_cols=32  Identities=13%  Similarity=-0.020  Sum_probs=30.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQ  215 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK  215 (231)
                      ..+|++||-.+.+|+++.|+||+||||||||+
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            56899999999999999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.67  E-value=3.2e-05  Score=69.34  Aligned_cols=36  Identities=17%  Similarity=0.043  Sum_probs=33.9

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++||+|+|=.|.|||=-.|+|+.|||||||||.|.
T Consensus        43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~   78 (257)
T COG1119          43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT   78 (257)
T ss_pred             CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHh
Confidence            467999999999999999999999999999999875

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=4e-05  Score=70.86  Aligned_cols=38  Identities=13%  Similarity=0.064  Sum_probs=34.7

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .....|+|||-.|++|++..|.|++|||||||++.+=.
T Consensus        17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~   54 (339)
T COG1135          17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL   54 (339)
T ss_pred             CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Confidence            45678999999999999999999999999999998754

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.65  E-value=3.2e-05  Score=83.72  Aligned_cols=35  Identities=14%  Similarity=0.095  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+++.|+||.|||||||||+|.
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~  473 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM  473 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            45999999999999999999999999999999986

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.65  E-value=3.8e-05  Score=67.42  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=31.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..|+|+|-.|.|||+-.|+||.|+||||||.+|.
T Consensus        19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It   52 (249)
T COG4674          19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT   52 (249)
T ss_pred             eeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence            3689999999999999999999999999998874

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.64  E-value=7.7e-05  Score=73.26  Aligned_cols=35  Identities=14%  Similarity=-0.005  Sum_probs=32.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+++|||..|.|||.+.++|.+||||||+.++|-
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~   56 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALM   56 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHh
Confidence            56899999999999999999999999999998874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.64  E-value=3.6e-05  Score=83.28  Aligned_cols=37  Identities=11%  Similarity=0.028  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|+|-.|+||+.+.|+||+|||||||+|.|.=+
T Consensus       398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl  434 (1466)
T PTZ00265        398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL  434 (1466)
T ss_pred             CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4599999999999999999999999999999998753

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.62  E-value=4.8e-05  Score=68.66  Aligned_cols=37  Identities=11%  Similarity=0.074  Sum_probs=34.1

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..++.++|+|-.++||||+-+||+.||||||.++.|.
T Consensus        13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmIL   49 (300)
T COG4152          13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL   49 (300)
T ss_pred             CceeeecceeeeecCCeEEEeecCCCCCccchHHHHh
Confidence            3467899999999999999999999999999999875

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.60  E-value=0.0001  Score=79.06  Aligned_cols=37  Identities=27%  Similarity=0.160  Sum_probs=34.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .+|+|+|-.|+|||-+.|.||.|||||||..+||=++
T Consensus      1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~ 1190 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV 1190 (1381)
T ss_pred             chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc
Confidence            3899999999999999999999999999999999654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.59  E-value=0.0001  Score=62.75  Aligned_cols=37  Identities=16%  Similarity=-0.041  Sum_probs=31.8

Q ss_pred             cccceeEEeCC-eEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          187 LNRVSGILKPG-SVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       187 L~dVSGiiKPG-eMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      .-+++-.+.+| ++++|.||.|||||||||+|.+.++.
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~   54 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM   54 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH
Confidence            45788889999 69999999999999999999965543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=97.57  E-value=5.6e-05  Score=73.63  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...+.|+|||-.++|||+..|+|-.|||||||+|+|+
T Consensus        19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs   55 (500)
T COG1129          19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS   55 (500)
T ss_pred             CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh
Confidence            3467999999999999999999999999999999986

>PTZ00243 ABC transporter; Provisional

Probab=97.56  E-value=5.1e-05  Score=82.59  Aligned_cols=35  Identities=20%  Similarity=0.094  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.||+|+|-.|+||+++.|+|+.|||||||||+|.
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~  707 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLL  707 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence            56999999999999999999999999999999986

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.56  E-value=5.9e-05  Score=74.09  Aligned_cols=35  Identities=11%  Similarity=-0.068  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.|++|+|..|.||+...|+||.|+|||||||+|.
T Consensus       335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~  369 (530)
T COG0488         335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA  369 (530)
T ss_pred             ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence            67999999999999999999999999999999984

>PLN03232 ABC transporter C family member; Provisional

Probab=97.55  E-value=5.6e-05  Score=81.90  Aligned_cols=35  Identities=11%  Similarity=-0.045  Sum_probs=32.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|.||+||||||||++|.
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl  664 (1495)
T PLN03232        630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML  664 (1495)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            35899999999999999999999999999999884

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.55  E-value=9.4e-05  Score=64.91  Aligned_cols=39  Identities=8%  Similarity=0.008  Sum_probs=36.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ..|.+|++-.+++|++++|.||.|+|||||||++.+.++
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~   56 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI   56 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.52  E-value=6.3e-05  Score=81.66  Aligned_cols=35  Identities=11%  Similarity=0.017  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+++.|.||+|||||||||+|.
T Consensus       651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~  685 (1522)
T TIGR00957       651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL  685 (1522)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.50  E-value=0.00013  Score=62.03  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=29.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      .|.+|++  +.+|+.++|.||.|||||||||+|....+
T Consensus        19 ~~~~~~~--l~~~~~~~l~G~Ng~GKStll~~i~~~~~   54 (202)
T cd03243          19 FVPNDIN--LGSGRLLLITGPNMGGKSTYLRSIGLAVL   54 (202)
T ss_pred             eEeeeEE--EcCCeEEEEECCCCCccHHHHHHHHHHHH
Confidence            4556654  45899999999999999999999996554

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.48  E-value=0.00012  Score=63.67  Aligned_cols=40  Identities=10%  Similarity=-0.033  Sum_probs=35.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC  224 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~  224 (231)
                      ..+.+|++-.+++ ++++|.||+|||||||||++.+++++.
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~   57 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA   57 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh
Confidence            4588999988877 999999999999999999999877664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.48  E-value=9.4e-05  Score=72.65  Aligned_cols=39  Identities=15%  Similarity=-0.021  Sum_probs=35.5

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .....++|||--+++||.+.|.|.+||||||+.|+|.=+
T Consensus       302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL  340 (539)
T COG1123         302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL  340 (539)
T ss_pred             cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            456789999999999999999999999999999998643

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.47  E-value=8.4e-05  Score=80.53  Aligned_cols=35  Identities=11%  Similarity=-0.036  Sum_probs=32.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|+||+.+.+.|++||||||+++.|.
T Consensus      1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~ 1215 (1466)
T PTZ00265       1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLM 1215 (1466)
T ss_pred             CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            35999999999999999999999999999999885

>PLN03130 ABC transporter C family member; Provisional

Probab=97.46  E-value=8.5e-05  Score=81.18  Aligned_cols=35  Identities=11%  Similarity=-0.040  Sum_probs=32.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|.||.||||||||++|.
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl  664 (1622)
T PLN03130        630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML  664 (1622)
T ss_pred             CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence            35899999999999999999999999999999985

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.44  E-value=9.1e-05  Score=82.59  Aligned_cols=36  Identities=14%  Similarity=0.036  Sum_probs=33.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+|+|-.|++||++.|+|+.||||||+||+|.=
T Consensus      1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~G 1987 (2272)
T TIGR01257      1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG 1987 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhC
Confidence            569999999999999999999999999999999863

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.42  E-value=9.4e-05  Score=72.69  Aligned_cols=35  Identities=20%  Similarity=0.070  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.|++|+|-.|.||+-+.|+|+.|+|||||||+|+
T Consensus        16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkila   50 (530)
T COG0488          16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILA   50 (530)
T ss_pred             ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHc
Confidence            56999999999999999999999999999999986

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.41  E-value=0.00012  Score=62.88  Aligned_cols=36  Identities=17%  Similarity=-0.002  Sum_probs=33.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..|.|++--...|+.+.+|||+|+||||||++|-|+
T Consensus        16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnll   51 (242)
T COG4161          16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH
Confidence            368899999999999999999999999999999886

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.41  E-value=0.0001  Score=82.13  Aligned_cols=37  Identities=8%  Similarity=-0.070  Sum_probs=34.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|+|-.+.+|+++.|+|+.|||||||||+|+-+
T Consensus       943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL  979 (2272)
T TIGR01257       943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL  979 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC
Confidence            5699999999999999999999999999999998743

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00013  Score=63.44  Aligned_cols=32  Identities=19%  Similarity=-0.048  Sum_probs=30.3

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      -+|||.-+.|||.+.+.|-+||||||||+.|.
T Consensus        22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is   53 (258)
T COG4107          22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCIS   53 (258)
T ss_pred             ccccceeecCCcEEEEEecCCCcHHhHHHHHh
Confidence            47999999999999999999999999999985

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=97.38  E-value=0.0001  Score=64.81  Aligned_cols=34  Identities=18%  Similarity=0.012  Sum_probs=30.9

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQ  215 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK  215 (231)
                      +++++++|||-.+++||++-+|||.||||||-+-
T Consensus        15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fy   48 (243)
T COG1137          15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFY   48 (243)
T ss_pred             CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEE
Confidence            4577999999999999999999999999999653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00032  Score=64.87  Aligned_cols=38  Identities=16%  Similarity=-0.041  Sum_probs=34.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...+++|||-.|++||.+.|.|-+||||||+.++|.-+
T Consensus        17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l   54 (316)
T COG0444          17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL   54 (316)
T ss_pred             cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc
Confidence            45689999999999999999999999999999998654

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.37  E-value=0.00016  Score=61.39  Aligned_cols=34  Identities=9%  Similarity=-0.034  Sum_probs=31.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      .-+|-|||-.|-|||++-++||+|+||||||-.+
T Consensus        15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~   48 (213)
T COG4136          15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWM   48 (213)
T ss_pred             ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHH
Confidence            3478999999999999999999999999999754

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.29  E-value=0.00019  Score=69.57  Aligned_cols=37  Identities=16%  Similarity=0.058  Sum_probs=34.3

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -...++|||-.|++||+..+||-.|||||||+|+||=
T Consensus        16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G   52 (501)
T COG3845          16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG   52 (501)
T ss_pred             CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC
Confidence            3567899999999999999999999999999999984

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.28  E-value=0.00034  Score=61.07  Aligned_cols=40  Identities=13%  Similarity=-0.044  Sum_probs=36.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      ..|.+|++-.+.+++.++|.||.||||||+||++.++++.
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l   56 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLM   56 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.25  E-value=0.00022  Score=75.49  Aligned_cols=36  Identities=19%  Similarity=0.076  Sum_probs=33.6

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...||+|+|-.|+||+.+.|.|++||||||+++.|.
T Consensus       365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~  400 (1228)
T KOG0055|consen  365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA  400 (1228)
T ss_pred             cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence            467999999999999999999999999999999874

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.00027  Score=62.26  Aligned_cols=38  Identities=11%  Similarity=-0.021  Sum_probs=34.0

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ....||+|+|-.|.+|-+|-+.||.||||||||-...=
T Consensus        12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR   49 (252)
T COG4604          12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR   49 (252)
T ss_pred             CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH
Confidence            34679999999999999999999999999999977653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0003  Score=61.42  Aligned_cols=39  Identities=15%  Similarity=0.026  Sum_probs=35.8

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ....+|++||-..+.|...-++|-+||||||||+.|-+|
T Consensus        17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L   55 (256)
T COG4598          17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL   55 (256)
T ss_pred             ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh
Confidence            357799999999999999999999999999999998665

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.15  E-value=0.00049  Score=60.55  Aligned_cols=39  Identities=15%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ...-|+++.|=+.||++++|.|+||+|||||+..++.-+
T Consensus        16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~   54 (271)
T cd01122          16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL   54 (271)
T ss_pred             CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789988999999999999999999999998876544

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.14  E-value=0.00027  Score=64.18  Aligned_cols=38  Identities=8%  Similarity=-0.088  Sum_probs=34.6

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...+|++++....++..+.|.|+||||||||++.|.-.
T Consensus        20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~   57 (300)
T TIGR00750        20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME   57 (300)
T ss_pred             HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999999999999988764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.08  E-value=0.00074  Score=59.09  Aligned_cols=41  Identities=10%  Similarity=-0.024  Sum_probs=37.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC  224 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~  224 (231)
                      ..|-+|++-.+++|++++|.||.++|||||||++.+.++..
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la   57 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA   57 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999987754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.06  E-value=0.00055  Score=61.99  Aligned_cols=37  Identities=11%  Similarity=-0.091  Sum_probs=34.2

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ....++|||-.|++||.+.|+|.+||||||+-|+|.-
T Consensus        25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~   61 (268)
T COG4608          25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG   61 (268)
T ss_pred             ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc
Confidence            4678999999999999999999999999999998853

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.00  E-value=0.00061  Score=56.52  Aligned_cols=31  Identities=16%  Similarity=0.060  Sum_probs=26.8

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      |.+.+|+++++.|+||+|||||+-.++.-++
T Consensus        27 g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~   57 (193)
T PF13481_consen   27 GLLPRGELTLIAGPPGSGKTTLALQLAAALA   57 (193)
T ss_dssp             TEE-TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred             CcccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6888999999999999999999988877554

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00052  Score=65.92  Aligned_cols=37  Identities=19%  Similarity=0.116  Sum_probs=34.7

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++||+++|-.+.||+++.+.|++|+||||+++.||=
T Consensus       275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR  311 (497)
T COG5265         275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR  311 (497)
T ss_pred             cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH
Confidence            4679999999999999999999999999999999973

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=96.96  E-value=0.00051  Score=58.94  Aligned_cols=25  Identities=8%  Similarity=-0.084  Sum_probs=22.8

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+.+.++||.||||||||++|..
T Consensus        26 ~~~~~~~i~G~NGsGKSTll~~i~~   50 (213)
T cd03279          26 DNNGLFLICGPTGAGKSTILDAITY   50 (213)
T ss_pred             CccCEEEEECCCCCCHHHHHHHhee
Confidence            4599999999999999999999974

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.90  E-value=0.00039  Score=63.38  Aligned_cols=30  Identities=7%  Similarity=-0.166  Sum_probs=26.9

Q ss_pred             cceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          189 RVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      =++-.+++|+.+++.|++||||||||++|.
T Consensus       136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~  165 (308)
T TIGR02788       136 FLRLAIASRKNIIISGGTGSGKTTFLKSLV  165 (308)
T ss_pred             HHHHHhhCCCEEEEECCCCCCHHHHHHHHH
Confidence            356788999999999999999999999875

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.90  E-value=0.00077  Score=51.22  Aligned_cols=26  Identities=8%  Similarity=-0.196  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++..++|.|+||+||||+++.+.-.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            67789999999999999999987543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.88  E-value=0.00022  Score=62.27  Aligned_cols=36  Identities=8%  Similarity=-0.120  Sum_probs=27.8

Q ss_pred             ccccccceeEEeCCe-EEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGS-VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGe-MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+++.+.-.++++. +.+|.|+||+||||+++.++-
T Consensus        29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~   65 (269)
T TIGR03015        29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK   65 (269)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346666665566554 899999999999999998753

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.0009  Score=72.00  Aligned_cols=34  Identities=9%  Similarity=0.008  Sum_probs=31.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .-|+|+|-.||+|+++.|.|+.||||||||.+|.
T Consensus       535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiL  568 (1381)
T KOG0054|consen  535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAIL  568 (1381)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence            3799999999999999999999999999999873

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.81  E-value=0.00081  Score=63.01  Aligned_cols=25  Identities=4%  Similarity=-0.063  Sum_probs=22.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+||.+++|.||+||||||+|++|.
T Consensus       131 ~~~~glilI~GpTGSGKTTtL~aLl  155 (358)
T TIGR02524       131 APQEGIVFITGATGSGKSTLLAAII  155 (358)
T ss_pred             hccCCEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999999965

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PF13245 AAA_19: Part of AAA domain

Probab=96.78  E-value=0.0013  Score=48.33  Aligned_cols=24  Identities=0%  Similarity=-0.251  Sum_probs=17.8

Q ss_pred             CCeEEEEecCCCCCchh-HHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLD-VFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcST-lLK~L~~  219 (231)
                      ++.+++|.||||||||+ +++.+.-
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHH
Confidence            46688899999999994 4444443

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.74  E-value=0.001  Score=59.29  Aligned_cols=37  Identities=11%  Similarity=-0.051  Sum_probs=34.9

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+.||+++|-.|..|+.+-|+|-.||||||||++|+
T Consensus        17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~ia   53 (263)
T COG1101          17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIA   53 (263)
T ss_pred             hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhh
Confidence            4577999999999999999999999999999999986

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.73  E-value=0.0011  Score=62.75  Aligned_cols=38  Identities=13%  Similarity=0.034  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.++++.+-.+..|++++++||||+||||++.-|+-..
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788888889999999999999999999999887643

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.73  E-value=0.0013  Score=61.46  Aligned_cols=33  Identities=15%  Similarity=0.007  Sum_probs=30.6

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      =++|+|-.|..||+..++|-+|||||||++.|-
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~N   75 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN   75 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHh
Confidence            378999999999999999999999999999763

>PRK05973 replicative DNA helicase; Provisional

Probab=96.72  E-value=0.001  Score=59.15  Aligned_cols=35  Identities=17%  Similarity=0.002  Sum_probs=29.3

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .+.+.|=+.||.+++|.|+||+|||||.--++.-+
T Consensus        54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~   88 (237)
T PRK05973         54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEA   88 (237)
T ss_pred             HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56788888999999999999999999876665433

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.66  E-value=0.0013  Score=53.63  Aligned_cols=30  Identities=20%  Similarity=-0.053  Sum_probs=25.7

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .-.++||.+.+|.|+.|||||||.|.++-.
T Consensus        16 ~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        16 AKPLDFGTVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             HHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            334688999999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.66  E-value=0.0022  Score=55.58  Aligned_cols=36  Identities=14%  Similarity=0.019  Sum_probs=28.2

Q ss_pred             cccccceeEEeCC--eEEEEecCCCCCchhHHHHHHHHHH
Q 037424          185 NILNRVSGILKPG--SVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       185 ~IL~dVSGiiKPG--eMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      .|=+|++-  .++  +.++|.||.|+|||||||++.+.++
T Consensus        17 ~vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~   54 (213)
T cd03281          17 FVPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVF   54 (213)
T ss_pred             eEcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHH
Confidence            35566652  333  8899999999999999999997654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09183 transposase/IS protein; Provisional

Probab=96.62  E-value=0.0016  Score=58.16  Aligned_cols=37  Identities=8%  Similarity=-0.136  Sum_probs=30.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..-|.+++- ++.|+.+++.||||+|||+|..+|...+
T Consensus        90 i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183         90 LQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             HHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            334556665 8899999999999999999999996554

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.61  E-value=0.0014  Score=60.75  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=22.5

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+.+++|.||+||||||+|++|.
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~  143 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMI  143 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999999999864

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=96.58  E-value=0.0029  Score=62.42  Aligned_cols=36  Identities=8%  Similarity=-0.090  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+++|++--+.+||-..++|+.||||||||++|+.
T Consensus        88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~  123 (614)
T KOG0927|consen   88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG  123 (614)
T ss_pred             ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhc
Confidence            457899999999999999999999999999999874

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=96.56  E-value=0.0026  Score=66.37  Aligned_cols=36  Identities=8%  Similarity=-0.027  Sum_probs=32.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...|+|++-.|++|+++.|.|+.|||||||++-...
T Consensus       620 ~~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~  655 (924)
T TIGR00630       620 ENNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLY  655 (924)
T ss_pred             cCCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHH
Confidence            346999999999999999999999999999985543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=96.54  E-value=0.0015  Score=58.16  Aligned_cols=34  Identities=18%  Similarity=0.005  Sum_probs=31.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|.-|+|-.+..|.-+||.|..|||||||||.|.
T Consensus        28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLs   61 (291)
T KOG2355|consen   28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILS   61 (291)
T ss_pred             ceEEEEeeccCCCceEEEEecCCCchhhhHHHhc
Confidence            5788999999999999999999999999999985

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.49  E-value=0.0022  Score=55.74  Aligned_cols=24  Identities=4%  Similarity=-0.267  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +..++.|.|++|||||||.+.|.=
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998874

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.46  E-value=0.0015  Score=60.98  Aligned_cols=28  Identities=11%  Similarity=-0.177  Sum_probs=24.9

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...++++..+||.|++||||||||++|.
T Consensus       156 ~~~v~~~~nilI~G~tGSGKTTll~aLl  183 (344)
T PRK13851        156 HACVVGRLTMLLCGPTGSGKTTMSKTLI  183 (344)
T ss_pred             HHHHHcCCeEEEECCCCccHHHHHHHHH
Confidence            3457889999999999999999999975

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.43  E-value=0.0022  Score=59.09  Aligned_cols=36  Identities=14%  Similarity=0.099  Sum_probs=30.2

Q ss_pred             ccc-ceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      |+. +.|=+.||++|.|.|+||+|||||...++.-+.
T Consensus        85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~  121 (316)
T TIGR02239        85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQ  121 (316)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence            555 567789999999999999999999988876443

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=96.42  E-value=0.0027  Score=57.30  Aligned_cols=28  Identities=11%  Similarity=-0.057  Sum_probs=24.3

Q ss_pred             CCeE-EEEecCCCCCchhHHHHHHHHHHH
Q 037424          196 PGSV-NLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       196 PGeM-TLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      -|.. ||++||||+||||+|+-|+=++-.
T Consensus       135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~  163 (308)
T COG3854         135 NGWLNTLIIGPPQVGKTTLLRDIARLLSD  163 (308)
T ss_pred             cCceeeEEecCCCCChHHHHHHHHHHhhc
Confidence            4777 999999999999999999876543

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.37  E-value=0.0025  Score=60.07  Aligned_cols=25  Identities=4%  Similarity=-0.352  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+++++.||||||||||.+.|+-.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4578899999999999999998643

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00767 rho transcription termination factor Rho

Probab=96.37  E-value=0.0034  Score=60.12  Aligned_cols=31  Identities=10%  Similarity=-0.056  Sum_probs=28.8

Q ss_pred             cceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          189 RVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |+.--|.+|+..+|+||||+||||+++.|+=
T Consensus       160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~  190 (415)
T TIGR00767       160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ  190 (415)
T ss_pred             eeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence            8889999999999999999999999998764

Members of this family differ in the specificity of RNA binding.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.36  E-value=0.0021  Score=56.78  Aligned_cols=31  Identities=10%  Similarity=-0.018  Sum_probs=25.3

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +=+...++.+..+++-|++||||||+|++|.
T Consensus       118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all  148 (270)
T PF00437_consen  118 EFLRSAVRGRGNILISGPTGSGKTTLLNALL  148 (270)
T ss_dssp             HHHHHCHHTTEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHhhccccceEEEEECCCccccchHHHHHh
Confidence            3344456778899999999999999999884

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.32  E-value=0.003  Score=45.09  Aligned_cols=21  Identities=10%  Similarity=-0.360  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+.|+|||||||+.+.|.-.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.31  E-value=0.0035  Score=57.83  Aligned_cols=27  Identities=15%  Similarity=-0.139  Sum_probs=24.1

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++|++++++|||||||||++..|+...
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            578999999999999999999998653

>TIGR00665 DnaB replicative DNA helicase

Probab=96.30  E-value=0.0031  Score=59.72  Aligned_cols=40  Identities=8%  Similarity=0.014  Sum_probs=33.5

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ...-|+++.|=+.||++++|-|+||+|||||.--++.-+.
T Consensus       181 G~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a  220 (434)
T TIGR00665       181 GFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA  220 (434)
T ss_pred             CchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence            3556888877789999999999999999999988765443

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>TIGR01069 mutS2 MutS2 family protein

Probab=96.30  E-value=0.0057  Score=62.73  Aligned_cols=37  Identities=19%  Similarity=-0.093  Sum_probs=31.1

Q ss_pred             ceeEEeCC-eEEEEecCCCCCchhHHHHHHHHHHHHHh
Q 037424          190 VSGILKPG-SVNLADCLTFLHPLDVFQVLFLLVLWCLH  226 (231)
Q Consensus       190 VSGiiKPG-eMTLVLGrPGSGcSTlLK~L~~~~~~~~~  226 (231)
                      ++-.+.++ +.++|.||.|+|||||||+|.+.++..-+
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~  351 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS  351 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh
Confidence            56667777 99999999999999999999998665544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PLN02796 D-glycerate 3-kinase

Probab=96.28  E-value=0.0015  Score=61.15  Aligned_cols=23  Identities=13%  Similarity=-0.117  Sum_probs=20.1

Q ss_pred             EEEEecCCCCCchhHHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++.|.|++|||||||++.|.-+.
T Consensus       102 iIGI~G~sGSGKSTLa~~L~~lL  124 (347)
T PLN02796        102 VIGISAPQGCGKTTLVFALVYLF  124 (347)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Confidence            48999999999999999887553

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.26  E-value=0.0034  Score=57.53  Aligned_cols=23  Identities=4%  Similarity=-0.291  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.++-|+|+|||||||||+.|.
T Consensus       103 ~~~~v~l~G~pGsGKTTLl~~l~  125 (290)
T PRK10463        103 KQLVLNLVSSPGSGKTTLLTETL  125 (290)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46688899999999999998775

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.25  E-value=0.0046  Score=50.87  Aligned_cols=29  Identities=10%  Similarity=-0.023  Sum_probs=24.5

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLVLWC  224 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~~~~  224 (231)
                      ++.++.|-||.||||||+||++.+++.-.
T Consensus        20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~   48 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLALGGA   48 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            44799999999999999999987776544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=96.24  E-value=0.0035  Score=60.65  Aligned_cols=35  Identities=9%  Similarity=-0.029  Sum_probs=30.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+++.++ .|.+|+.++|+|++|+||||||+.|.-
T Consensus       153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~  187 (450)
T PRK06002        153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLAR  187 (450)
T ss_pred             cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            45677787 689999999999999999999998764

>PRK15494 era GTPase Era; Provisional

Probab=96.22  E-value=0.0033  Score=58.23  Aligned_cols=33  Identities=6%  Similarity=-0.127  Sum_probs=27.4

Q ss_pred             ccccceeEEeCCe-------EEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGS-------VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGe-------MTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.+++-.+++|+       -++|+|+||+|||||++.|.
T Consensus        34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~   73 (339)
T PRK15494         34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRII   73 (339)
T ss_pred             cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHh
Confidence            4566666678888       78999999999999999874

>cd01878 HflX HflX subfamily

Probab=96.20  E-value=0.0032  Score=52.75  Aligned_cols=21  Identities=14%  Similarity=-0.130  Sum_probs=18.7

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -++|+|+||+|||||++.|.-
T Consensus        43 ~I~iiG~~g~GKStLl~~l~~   63 (204)
T cd01878          43 TVALVGYTNAGKSTLFNALTG   63 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHhc
Confidence            678999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.19  E-value=0.0028  Score=63.69  Aligned_cols=36  Identities=11%  Similarity=-0.110  Sum_probs=29.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+|++++--..||++++|.||||+||||++++|+=.
T Consensus        98 ~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~  133 (637)
T TIGR00602        98 TWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE  133 (637)
T ss_pred             HHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345666555789999999999999999999999844

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08149 ATP synthase SpaL; Validated

Probab=96.17  E-value=0.0045  Score=59.53  Aligned_cols=34  Identities=6%  Similarity=-0.075  Sum_probs=31.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+++ -.+..|+.+.|+|++|+||||||+.|+
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~  172 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLI  172 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHh
Confidence            4689999 889999999999999999999999875

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.16  E-value=0.003  Score=57.72  Aligned_cols=26  Identities=12%  Similarity=-0.173  Sum_probs=23.2

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++++..++|-|++||||||||++|.
T Consensus       128 ~v~~~~~ilI~G~tGSGKTTll~al~  153 (299)
T TIGR02782       128 AVLARKNILVVGGTGSGKTTLANALL  153 (299)
T ss_pred             HHHcCCeEEEECCCCCCHHHHHHHHH
Confidence            46678889999999999999999975

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.14  E-value=0.0037  Score=56.85  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|.++.++|+||+|||||++.|.
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~  185 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALA  185 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999999985

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=96.12  E-value=0.0064  Score=63.65  Aligned_cols=36  Identities=11%  Similarity=-0.004  Sum_probs=32.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+.|+|++-.|.+|+++.|.|..|||||||++.+..
T Consensus       622 ~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~  657 (943)
T PRK00349        622 ENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLY  657 (943)
T ss_pred             cCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346999999999999999999999999999997754

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=96.11  E-value=0.0052  Score=57.13  Aligned_cols=34  Identities=3%  Similarity=-0.089  Sum_probs=31.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+++ -.+.+|+.+.|+|++|+||||||+.|.
T Consensus        57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia   90 (326)
T cd01136          57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIA   90 (326)
T ss_pred             cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHh
Confidence            5689999 899999999999999999999999876

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.10  E-value=0.0044  Score=52.20  Aligned_cols=28  Identities=11%  Similarity=0.093  Sum_probs=22.6

Q ss_pred             ceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          190 VSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.-.+++ +.++++|++|+|||||++.|.
T Consensus        29 l~~~l~~-k~~vl~G~SGvGKSSLiN~L~   56 (161)
T PF03193_consen   29 LKELLKG-KTSVLLGQSGVGKSSLINALL   56 (161)
T ss_dssp             HHHHHTT-SEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHhcC-CEEEEECCCCCCHHHHHHHHH
Confidence            3334444 789999999999999999985

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.08  E-value=0.0045  Score=55.51  Aligned_cols=24  Identities=17%  Similarity=0.029  Sum_probs=21.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++.+++|-|++||||||+|+++.
T Consensus        78 ~~~GlilisG~tGSGKTT~l~all  101 (264)
T cd01129          78 KPHGIILVTGPTGSGKTTTLYSAL  101 (264)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHH
Confidence            566789999999999999999864

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PLN02200 adenylate kinase family protein

Probab=96.07  E-value=0.0051  Score=54.22  Aligned_cols=25  Identities=4%  Similarity=-0.285  Sum_probs=20.9

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .|+..+.+|+|+|||||||+-+.|+
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La   64 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIV   64 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3444678999999999999988876

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.06  E-value=0.005  Score=65.53  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=32.1

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      +...||+|+|-.|++|+-+.+.||+||||||..-.|
T Consensus      1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred             CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence            446799999999999999999999999999986543

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.04  E-value=0.0036  Score=57.85  Aligned_cols=26  Identities=8%  Similarity=-0.129  Sum_probs=23.5

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++++.-++|.|+|||||||||++|.
T Consensus       144 ~v~~~~~ilI~G~tGSGKTTll~aL~  169 (319)
T PRK13894        144 AVRAHRNILVIGGTGSGKTTLVNAII  169 (319)
T ss_pred             HHHcCCeEEEECCCCCCHHHHHHHHH
Confidence            56788899999999999999999986

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=95.99  E-value=0.0043  Score=56.09  Aligned_cols=22  Identities=9%  Similarity=-0.179  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-++++|+|||||||||++|+=
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~  133 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLAR  133 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Confidence            4578999999999999999874

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=95.99  E-value=0.0066  Score=58.51  Aligned_cols=34  Identities=9%  Similarity=-0.039  Sum_probs=31.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|+++ -.|.+|+.+.++|++|+||||+++.|.
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~  176 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMIT  176 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHh
Confidence            5689999 999999999999999999999999875

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=95.97  E-value=0.0077  Score=66.59  Aligned_cols=35  Identities=9%  Similarity=0.014  Sum_probs=31.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|++|+++.|.|+.|||||||++-+.
T Consensus       608 ~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L  642 (1809)
T PRK00635        608 KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL  642 (1809)
T ss_pred             cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHH
Confidence            35799999999999999999999999999999433

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]

Probab=95.97  E-value=0.0019  Score=61.11  Aligned_cols=38  Identities=16%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++..+||-+=+=-+|||||.+-||.||||||||---.|
T Consensus       258 kRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsL  295 (514)
T KOG2373|consen  258 KRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSL  295 (514)
T ss_pred             hhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhH
Confidence            34667777777789999999999999999999865443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=95.96  E-value=0.0061  Score=58.77  Aligned_cols=35  Identities=3%  Similarity=-0.096  Sum_probs=32.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+++++ -.+.+|+.+.++|++|+||||||+.|.-
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~  180 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIAR  180 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhc
Confidence            5689999 9999999999999999999999998763

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.95  E-value=0.003  Score=58.26  Aligned_cols=31  Identities=6%  Similarity=-0.128  Sum_probs=26.4

Q ss_pred             cceeEEeC--CeEEEEecCCCCCchhHHHHHHH
Q 037424          189 RVSGILKP--GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       189 dVSGiiKP--GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++-.++|  ++...|+|+||+|||||.+.|.-
T Consensus       152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~  184 (325)
T TIGR01526       152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAA  184 (325)
T ss_pred             hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHH
Confidence            35566777  88999999999999999999875

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd01858 NGP_1 NGP-1

Probab=95.94  E-value=0.0063  Score=49.42  Aligned_cols=20  Identities=5%  Similarity=-0.245  Sum_probs=17.5

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+++|+||+|||||+++|.
T Consensus       104 ~v~~~G~~nvGKStliN~l~  123 (157)
T cd01858         104 SVGFIGYPNVGKSSIINTLR  123 (157)
T ss_pred             EEEEEeCCCCChHHHHHHHh
Confidence            34689999999999999984

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=95.92  E-value=0.0066  Score=60.38  Aligned_cols=42  Identities=17%  Similarity=0.056  Sum_probs=36.7

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHHHh
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLH  226 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~~~  226 (231)
                      ...|.+|.|--|..|.-+||.||+|+|||+||++|.  -||-+|
T Consensus       447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlg--gLWp~~  488 (659)
T KOG0060|consen  447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLG--GLWPST  488 (659)
T ss_pred             CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHh--cccccC
Confidence            455889999999999999999999999999999986  356554

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=95.92  E-value=0.004  Score=57.80  Aligned_cols=28  Identities=4%  Similarity=-0.202  Sum_probs=24.0

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...++.+..+||-|++||||||||++|.
T Consensus       154 ~~~v~~~~nili~G~tgSGKTTll~aL~  181 (332)
T PRK13900        154 EHAVISKKNIIISGGTSTGKTTFTNAAL  181 (332)
T ss_pred             HHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence            3356788899999999999999999974

>cd01882 BMS1 Bms1

Probab=95.91  E-value=0.0055  Score=53.32  Aligned_cols=28  Identities=11%  Similarity=-0.142  Sum_probs=25.4

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |...|++++.|+|+||+|||||++.|.-
T Consensus        34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~   61 (225)
T cd01882          34 PEEPPPLVVAVVGPPGVGKTTLIKSLVK   61 (225)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            7789999999999999999999988753

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=95.91  E-value=0.0053  Score=57.88  Aligned_cols=34  Identities=29%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             cccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          187 LNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       187 L~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |+.+- |=+.||+++||-|+||+|||||+..++--
T Consensus        71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~  105 (372)
T cd01121          71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR  105 (372)
T ss_pred             HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45543 45779999999999999999999887643

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PTZ00035 Rad51 protein; Provisional

Probab=95.89  E-value=0.0062  Score=56.61  Aligned_cols=31  Identities=13%  Similarity=0.029  Sum_probs=26.7

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|=|.+|++|.|.|+||||||||...+...+
T Consensus       112 gGGi~~G~iteI~G~~GsGKT~l~~~l~~~~  142 (337)
T PTZ00035        112 GGGIETGSITELFGEFRTGKTQLCHTLCVTC  142 (337)
T ss_pred             CCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence            4668899999999999999999998776544

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.89  E-value=0.0053  Score=58.05  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=33.2

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ...-|+++.|=++||++++|-||||+|||||.-.++.-+
T Consensus       180 G~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~  218 (421)
T TIGR03600       180 GLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENV  218 (421)
T ss_pred             CChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            356688888778999999999999999999998887443

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.87  E-value=0.0058  Score=55.27  Aligned_cols=23  Identities=9%  Similarity=0.046  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCCchhHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++++.++|+||+|||||+++|.=
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~  183 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLP  183 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhc
Confidence            37999999999999999999863

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.85  E-value=0.0069  Score=55.37  Aligned_cols=23  Identities=9%  Similarity=-0.099  Sum_probs=20.3

Q ss_pred             eEEEEecCCCCCchhHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++.|.|+||||||||.+.|.-+
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            68899999999999999987644

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK01889 GTPase RsgA; Reviewed

Probab=95.84  E-value=0.0032  Score=58.80  Aligned_cols=32  Identities=13%  Similarity=0.054  Sum_probs=27.0

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.+.-.++||+++.++|+||+|||||+++|.
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~  216 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALL  216 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHH
Confidence            34444557899999999999999999999986

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.77  E-value=0.0089  Score=53.23  Aligned_cols=30  Identities=10%  Similarity=-0.108  Sum_probs=24.9

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      +-..|=+.+|.+|||.|+||+|||||---+
T Consensus        27 ~~~~GGip~gs~~lI~G~pGtGKT~l~~qf   56 (259)
T TIGR03878        27 RKPLGGIPAYSVINITGVSDTGKSLMVEQF   56 (259)
T ss_pred             cccCCCeECCcEEEEEcCCCCCHHHHHHHH
Confidence            345666889999999999999999986654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR00416 sms DNA repair protein RadA

Probab=95.75  E-value=0.0066  Score=58.60  Aligned_cols=34  Identities=24%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             ccccc-eeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      =|+.+ .|=+.||+++||.|+||+|||||+..++-
T Consensus        82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~  116 (454)
T TIGR00416        82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC  116 (454)
T ss_pred             HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            36665 35688999999999999999999987643

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.75  E-value=0.006  Score=57.59  Aligned_cols=24  Identities=8%  Similarity=-0.063  Sum_probs=20.7

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++-++||-||+||||||+|++|.
T Consensus       147 ~~~GlilI~G~TGSGKTT~l~al~  170 (372)
T TIGR02525       147 PAAGLGLICGETGSGKSTLAASIY  170 (372)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHH
Confidence            345589999999999999999974

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.73  E-value=0.0071  Score=58.03  Aligned_cols=27  Identities=19%  Similarity=-0.016  Sum_probs=24.3

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++.+|+.+.++||+|+||||+++.|+-
T Consensus       187 ~~~~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        187 IIEQGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999998875

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.73  E-value=0.0099  Score=52.20  Aligned_cols=38  Identities=13%  Similarity=-0.059  Sum_probs=34.4

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...+..+.||..++.|..+.+.|..|||||||-|.|+=
T Consensus        24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaG   61 (267)
T COG4167          24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG   61 (267)
T ss_pred             hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence            44667899999999999999999999999999999863

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.69  E-value=0.0061  Score=56.58  Aligned_cols=28  Identities=4%  Similarity=-0.224  Sum_probs=22.7

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++.+...||-|++||||||||++|.-.
T Consensus       140 ~v~~~~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        140 AIDSRLNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             HHHcCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4455667899999999999999997643

>PF00488 MutS_V: MutS domain V C-terminus

Probab=95.68  E-value=0.011  Score=52.20  Aligned_cols=41  Identities=7%  Similarity=0.002  Sum_probs=30.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC  224 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~  224 (231)
                      ..|-+|+.-.-...++++|-||..||||||||++.+.++.+
T Consensus        30 ~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ila   70 (235)
T PF00488_consen   30 KFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILA   70 (235)
T ss_dssp             SC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHH
T ss_pred             ceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhh
Confidence            33556665433334699999999999999999999998865

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=95.67  E-value=0.011  Score=56.99  Aligned_cols=32  Identities=9%  Similarity=-0.064  Sum_probs=29.4

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +..||-.||.||++.+.|..|||||||+|.|.
T Consensus       339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLt  370 (546)
T COG4615         339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLT  370 (546)
T ss_pred             ecceeeEEecCcEEEEECCCCCcHHHHHHHHh
Confidence            56788999999999999999999999999875

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=95.67  E-value=0.0087  Score=50.59  Aligned_cols=37  Identities=19%  Similarity=-0.036  Sum_probs=24.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ..+.+..-++..--+||.|.||||||++|++|..-++
T Consensus        27 ~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll~~l~   63 (205)
T PF01580_consen   27 RGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLLLSLA   63 (205)
T ss_dssp             TS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCceEEEEcCCCCCccHHHHHHHHHHH
Confidence            3445555555555789999999999999998766543

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.64  E-value=0.0083  Score=58.58  Aligned_cols=36  Identities=17%  Similarity=0.015  Sum_probs=29.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++++.+-.+..|++.+++||+|+||||.+.-|+-.
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHH
Confidence            355666666778899999999999999999988843

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=95.62  E-value=0.0098  Score=61.76  Aligned_cols=33  Identities=15%  Similarity=0.040  Sum_probs=31.2

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+++|..|+|||...+||+.||||||++|.|.
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mlt  612 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT  612 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHh
Confidence            899999999999999999999999999999653

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.61  E-value=0.008  Score=57.15  Aligned_cols=26  Identities=8%  Similarity=-0.185  Sum_probs=22.9

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.|++-+|+.||||+|||++.|+++-
T Consensus       176 l~~pkgvLL~GppGTGKT~LAkalA~  201 (398)
T PTZ00454        176 IDPPRGVLLYGPPGTGKTMLAKAVAH  201 (398)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46778889999999999999999864

>PRK09862 putative ATP-dependent protease; Provisional

Probab=95.60  E-value=0.008  Score=58.98  Aligned_cols=35  Identities=6%  Similarity=-0.330  Sum_probs=31.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..++++++=.+.+|+.+++.|+||+|||||+|.|.
T Consensus       197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~  231 (506)
T PRK09862        197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRIN  231 (506)
T ss_pred             HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHh
Confidence            44778888889999999999999999999999886

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.59  E-value=0.009  Score=61.22  Aligned_cols=37  Identities=16%  Similarity=0.021  Sum_probs=31.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.++++++..+++|++++++||.|+||||.+.-|+-.
T Consensus       172 l~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        172 LPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             hhhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhh
Confidence            3467788877888999999999999999999888754

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.57  E-value=0.014  Score=52.83  Aligned_cols=25  Identities=4%  Similarity=-0.300  Sum_probs=22.8

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ||+.++++|++|+||||+++.|+..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~   98 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQ   98 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHH
Confidence            7799999999999999999998754

>PRK09165 replicative DNA helicase; Provisional

Probab=95.56  E-value=0.0079  Score=58.67  Aligned_cols=38  Identities=11%  Similarity=0.057  Sum_probs=32.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.=|+++.|=++||++++|-||||.|||||.=-++.-+
T Consensus       204 ~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~  241 (497)
T PRK09165        204 LRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNA  241 (497)
T ss_pred             hHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHH
Confidence            55688988779999999999999999999987666543

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=95.55  E-value=0.011  Score=57.07  Aligned_cols=34  Identities=6%  Similarity=-0.095  Sum_probs=30.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|+.+ -.+.+|+.+.|+|++|+||||||+.|.
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~  183 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMT  183 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhc
Confidence            5567777 889999999999999999999999886

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=95.55  E-value=0.0094  Score=57.13  Aligned_cols=35  Identities=3%  Similarity=-0.145  Sum_probs=31.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+++ -.+.+|+.+.+.|++|+||||||++|.-
T Consensus       133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~  167 (422)
T TIGR02546       133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIAR  167 (422)
T ss_pred             ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhC
Confidence            5689999 8899999999999999999999998863

>PRK09099 type III secretion system ATPase; Provisional

Probab=95.53  E-value=0.012  Score=56.84  Aligned_cols=35  Identities=9%  Similarity=-0.034  Sum_probs=32.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+++++ -.+.+|+.+.|+|++|+||||||+.|+-
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~  185 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFAR  185 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhC
Confidence            6689999 7889999999999999999999999874

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.50  E-value=0.0078  Score=56.06  Aligned_cols=27  Identities=4%  Similarity=-0.204  Sum_probs=21.9

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++.-...|.|+||||||||++.|.-..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345688899999999999999876543

>PRK07004 replicative DNA helicase; Provisional

Probab=95.43  E-value=0.01  Score=57.32  Aligned_cols=38  Identities=8%  Similarity=-0.034  Sum_probs=32.9

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-..-|++++|=++||++++|-|+||.|||+|.-.++.
T Consensus       198 TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~  235 (460)
T PRK07004        198 TGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGE  235 (460)
T ss_pred             CCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHH
Confidence            34667999988799999999999999999999877764

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=95.42  E-value=0.012  Score=56.85  Aligned_cols=34  Identities=12%  Similarity=0.015  Sum_probs=31.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|+++ -.+.+|+.+.|+|++|+||||||+.|.
T Consensus       143 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~  176 (433)
T PRK07594        143 IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLC  176 (433)
T ss_pred             ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhc
Confidence            5689999 889999999999999999999999875

>PRK05595 replicative DNA helicase; Provisional

Probab=95.42  E-value=0.0091  Score=57.13  Aligned_cols=38  Identities=8%  Similarity=-0.012  Sum_probs=32.7

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ....-|++..|=++||++++|.||||.|||||.--++.
T Consensus       186 tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~  223 (444)
T PRK05595        186 SGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAE  223 (444)
T ss_pred             CChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHH
Confidence            33566888888899999999999999999999877764

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=95.42  E-value=0.012  Score=53.28  Aligned_cols=30  Identities=7%  Similarity=-0.120  Sum_probs=24.9

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|=+..|.+|+|.|+||||||||.-.++.-
T Consensus        89 ~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~  118 (310)
T TIGR02236        89 GGGIETQAITEVFGEFGSGKTQICHQLAVN  118 (310)
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345668999999999999999998777544

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>TIGR00368 Mg chelatase-related protein

Probab=95.40  E-value=0.0084  Score=58.67  Aligned_cols=34  Identities=9%  Similarity=-0.268  Sum_probs=30.3

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.++++=.+.+|+.++++|+||+|||||+|.|.
T Consensus       199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~  232 (499)
T TIGR00368       199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQ  232 (499)
T ss_pred             HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHh
Confidence            3567788888999999999999999999999986

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK08760 replicative DNA helicase; Provisional

Probab=95.39  E-value=0.011  Score=57.31  Aligned_cols=39  Identities=8%  Similarity=0.012  Sum_probs=33.0

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -..-|+++.|=++||++++|-||||.|||||.--++.-+
T Consensus       215 G~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~  253 (476)
T PRK08760        215 GYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYA  253 (476)
T ss_pred             CcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHH
Confidence            356688887669999999999999999999998887544

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.37  E-value=0.01  Score=52.85  Aligned_cols=21  Identities=14%  Similarity=-0.080  Sum_probs=18.5

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -.+|+|++|+|||||.++|+=
T Consensus        33 ~IllvG~tGvGKSSliNaLlg   53 (249)
T cd01853          33 TILVLGKTGVGKSSTINSIFG   53 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            557899999999999999873

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=95.37  E-value=0.011  Score=58.13  Aligned_cols=36  Identities=11%  Similarity=-0.046  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||++-+-.+.-||-..|.||.|+|||||||+|+=
T Consensus        93 k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            458999999999999999999999999999999975

>TIGR02012 tigrfam_recA protein RecA

Probab=95.35  E-value=0.016  Score=53.79  Aligned_cols=26  Identities=12%  Similarity=-0.164  Sum_probs=21.9

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      |=+.+|++|+|.||||||||||.-.+
T Consensus        50 GGlp~G~iteI~G~~GsGKTtLaL~~   75 (321)
T TIGR02012        50 GGLPRGRIIEIYGPESSGKTTLALHA   75 (321)
T ss_pred             CCCcCCeEEEEECCCCCCHHHHHHHH
Confidence            34679999999999999999995443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK11823 DNA repair protein RadA; Provisional

Probab=95.32  E-value=0.015  Score=56.07  Aligned_cols=36  Identities=28%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             cccccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .-|+.+ .|=+.||+++||.|+||+|||||+-.++.-
T Consensus        67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~  103 (446)
T PRK11823         67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR  103 (446)
T ss_pred             HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            346665 356779999999999999999999887654

>PRK05636 replicative DNA helicase; Provisional

Probab=95.31  E-value=0.013  Score=57.31  Aligned_cols=37  Identities=8%  Similarity=0.017  Sum_probs=31.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..=|+++.|=++||++++|-|+||.|||||.--++.-
T Consensus       252 ~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~  288 (505)
T PRK05636        252 FKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRS  288 (505)
T ss_pred             hHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            5568898888999999999999999999997666543

>PHA02542 41 41 helicase; Provisional

Probab=95.31  E-value=0.011  Score=57.37  Aligned_cols=39  Identities=18%  Similarity=0.064  Sum_probs=34.3

Q ss_pred             cccccccce-eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -..-|+.+. |=++||+|++|-||||.|||||.--++.-+
T Consensus       175 G~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~  214 (473)
T PHA02542        175 KLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADY  214 (473)
T ss_pred             CcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHH
Confidence            366799998 788999999999999999999998887654

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.31  E-value=0.014  Score=49.58  Aligned_cols=26  Identities=8%  Similarity=-0.252  Sum_probs=22.4

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+.-++|.|+||+|||++++.++--
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~   61 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAA   61 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            56778899999999999999988743

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=95.30  E-value=0.016  Score=56.19  Aligned_cols=34  Identities=12%  Similarity=-0.099  Sum_probs=31.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|+++ -.|.+|+.++++|++|+|||||++.|.
T Consensus       156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~  189 (451)
T PRK05688        156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMT  189 (451)
T ss_pred             eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHh
Confidence            5688999 889999999999999999999999885

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.30  E-value=0.012  Score=57.87  Aligned_cols=25  Identities=16%  Similarity=0.017  Sum_probs=22.1

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+++++||=|||||||||.+|+|+=
T Consensus        43 ~~~~iLlLtGP~G~GKtttv~~La~   67 (519)
T PF03215_consen   43 SPKRILLLTGPSGCGKTTTVKVLAK   67 (519)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHH
Confidence            4667999999999999999999873

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=95.27  E-value=0.017  Score=63.99  Aligned_cols=33  Identities=6%  Similarity=-0.048  Sum_probs=30.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      +.|+|++-.|.+|++|.|.|+.|||||||++.+
T Consensus       949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~  981 (1809)
T PRK00635        949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI  981 (1809)
T ss_pred             ccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence            469999999999999999999999999988766

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=95.25  E-value=0.018  Score=55.11  Aligned_cols=34  Identities=6%  Similarity=-0.069  Sum_probs=30.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+++.+ -.+.+|+.++|+|++|+||||||+.|.
T Consensus       125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~  158 (411)
T TIGR03496       125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMA  158 (411)
T ss_pred             EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHh
Confidence            5678888 889999999999999999999999876

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08506 replicative DNA helicase; Provisional

Probab=95.24  E-value=0.014  Score=56.63  Aligned_cols=40  Identities=10%  Similarity=0.072  Sum_probs=34.1

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .-..-|+++.|=++||++++|-||||.|||+|.--++.=+
T Consensus       177 TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~  216 (472)
T PRK08506        177 TGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKA  216 (472)
T ss_pred             CChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHH
Confidence            3466788888779999999999999999999998887653

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=95.23  E-value=0.013  Score=56.45  Aligned_cols=35  Identities=3%  Similarity=-0.115  Sum_probs=31.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+++ -.+.+|+.+.|+|++|+||||||+.|.-
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~  185 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIAR  185 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5688888 8899999999999999999999998763

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=95.23  E-value=0.015  Score=47.23  Aligned_cols=23  Identities=9%  Similarity=-0.112  Sum_probs=19.7

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+..++++|+||+|||||+++|.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~  121 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALL  121 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHH
Confidence            34567899999999999999986

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK05748 replicative DNA helicase; Provisional

Probab=95.23  E-value=0.012  Score=56.36  Aligned_cols=39  Identities=10%  Similarity=0.064  Sum_probs=32.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -..-|+++.|=++||++++|-||||.|||||.--++.=+
T Consensus       189 G~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~  227 (448)
T PRK05748        189 GFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNV  227 (448)
T ss_pred             ChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHH
Confidence            355688888778999999999999999999987776543

>PRK06936 type III secretion system ATPase; Provisional

Probab=95.22  E-value=0.018  Score=55.68  Aligned_cols=35  Identities=6%  Similarity=-0.105  Sum_probs=31.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+++++ -.+..|+.+.+.|++|+||||||+.|+-
T Consensus       150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~  184 (439)
T PRK06936        150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIR  184 (439)
T ss_pred             cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhc
Confidence            5589999 8899999999999999999999999874

>PLN02165 adenylate isopentenyltransferase

Probab=95.21  E-value=0.014  Score=54.58  Aligned_cols=26  Identities=12%  Similarity=-0.299  Sum_probs=22.0

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++|+++.|+||+|||||||.+.|+-.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~   66 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATR   66 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHH
Confidence            35668999999999999999988754

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.20  E-value=0.02  Score=53.27  Aligned_cols=29  Identities=7%  Similarity=-0.223  Sum_probs=24.3

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |=+.+|++|+|.||||||||||.-.+..-
T Consensus        50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~   78 (325)
T cd00983          50 GGYPKGRIIEIYGPESSGKTTLALHAIAE   78 (325)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45779999999999999999997766543

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=95.16  E-value=0.016  Score=56.92  Aligned_cols=34  Identities=9%  Similarity=-0.056  Sum_probs=29.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+++|+.-.+ +|.++.|.|+|||||||+.|.|+
T Consensus       272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la  305 (512)
T PRK13477        272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVA  305 (512)
T ss_pred             eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHH
Confidence            44789986644 88999999999999999999997

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=95.14  E-value=0.015  Score=51.41  Aligned_cols=21  Identities=5%  Similarity=-0.045  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++.++|+||.|||||++.|.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~  141 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALD  141 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            588999999999999999986

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01855 YqeH YqeH

Probab=95.14  E-value=0.0073  Score=50.48  Aligned_cols=24  Identities=13%  Similarity=-0.020  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCCchhHHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +..+.++|.||+|||||+++|+-.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~  150 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKK  150 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHh
Confidence            345778899999999999999753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=95.14  E-value=0.016  Score=55.84  Aligned_cols=35  Identities=3%  Similarity=-0.121  Sum_probs=31.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...|+++ -.+..|+.+.++|++|+|||||+++|.-
T Consensus       145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~  179 (434)
T PRK08472        145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVK  179 (434)
T ss_pred             hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4478888 7888999999999999999999999863

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=95.13  E-value=0.014  Score=54.45  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             ccc-ceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      |+. +.|=+.+|++|.|-|+||+|||+|.-.|+.-+.
T Consensus       112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~  148 (342)
T PLN03186        112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQ  148 (342)
T ss_pred             HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhh
Confidence            555 467788999999999999999999977765443

>PRK06321 replicative DNA helicase; Provisional

Probab=95.12  E-value=0.012  Score=57.27  Aligned_cols=38  Identities=5%  Similarity=-0.022  Sum_probs=32.5

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      -..-|+++.|=++||++++|.||||.|||+|.--|+.-
T Consensus       212 G~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~  249 (472)
T PRK06321        212 HFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAEN  249 (472)
T ss_pred             CcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence            35668999888999999999999999999997776543

>PRK08006 replicative DNA helicase; Provisional

Probab=95.12  E-value=0.014  Score=56.62  Aligned_cols=40  Identities=13%  Similarity=0.055  Sum_probs=34.3

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .-..-|++++|=++||+++.|-||||.|||||.--|+.-+
T Consensus       209 TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~  248 (471)
T PRK08006        209 TGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENA  248 (471)
T ss_pred             CCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4466799998889999999999999999999977776544

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=95.10  E-value=0.02  Score=54.90  Aligned_cols=35  Identities=6%  Similarity=-0.077  Sum_probs=31.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+++++ -.+.+|+.+.+.|++|+||||||+.|+-
T Consensus       125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~  159 (413)
T TIGR03497       125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIAR  159 (413)
T ss_pred             ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5678889 8899999999999999999999997763

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK13764 ATPase; Provisional

Probab=95.08  E-value=0.015  Score=58.27  Aligned_cols=25  Identities=12%  Similarity=-0.214  Sum_probs=21.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+.-.||-|+|||||||||++|.-
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~  279 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAE  279 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999663

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=95.07  E-value=0.023  Score=54.88  Aligned_cols=38  Identities=11%  Similarity=-0.072  Sum_probs=34.0

Q ss_pred             cccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          181 EAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       181 k~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .......++||-.+++|+.+.|.|.+|||||||=.+|.
T Consensus       297 ~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all  334 (534)
T COG4172         297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL  334 (534)
T ss_pred             chheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence            34577899999999999999999999999999987764

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=95.03  E-value=0.016  Score=53.68  Aligned_cols=25  Identities=8%  Similarity=-0.230  Sum_probs=20.3

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|..=+|+.||||+|||++.|+++-
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~  178 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAH  178 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3444578889999999999999863

Many proteins may score above the trusted cutoff because an internal

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=95.02  E-value=0.022  Score=56.57  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHHHhh
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHA  227 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~~~~  227 (231)
                      +....+-.|+||-=+|+.||.|+|||+|+++|.  -||-.|.
T Consensus       497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILg--gLWPvy~  536 (728)
T KOG0064|consen  497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILG--GLWPVYN  536 (728)
T ss_pred             eecceeEEecCCceEEEECCCCccHHHHHHHHh--ccCcccC
Confidence            678899999999999999999999999999975  4565553

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=94.99  E-value=0.019  Score=52.95  Aligned_cols=32  Identities=9%  Similarity=-0.098  Sum_probs=26.6

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      .|=|.+|.+|+|-|+||||||+|.-.+++-+.
T Consensus        90 gGGi~~G~iteI~G~~GsGKTql~lqla~~~~  121 (313)
T TIGR02238        90 GGGIESMSITEVFGEFRCGKTQLSHTLCVTAQ  121 (313)
T ss_pred             CCCCcCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence            45577999999999999999999977766443

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=94.97  E-value=0.017  Score=51.15  Aligned_cols=21  Identities=14%  Similarity=-0.148  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +++.||||+||||+.+.++-.
T Consensus        45 vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        45 MIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            578899999999999999754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=94.95  E-value=0.02  Score=45.76  Aligned_cols=20  Identities=5%  Similarity=-0.170  Sum_probs=18.3

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++++|+||+|||||+++|.
T Consensus        85 ~~~~~G~~~vGKstlin~l~  104 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALV  104 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999999984

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=94.85  E-value=0.019  Score=55.94  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=20.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      +|+-|+||-||+||||||+|+++
T Consensus       240 ~~~GlilitGptGSGKTTtL~a~  262 (486)
T TIGR02533       240 RPHGIILVTGPTGSGKTTTLYAA  262 (486)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHH
Confidence            45568999999999999999975

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.84  E-value=0.019  Score=58.27  Aligned_cols=26  Identities=8%  Similarity=-0.199  Sum_probs=23.5

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|++-+|+.||||+|||||+++|+=
T Consensus       209 i~~~~giLL~GppGtGKT~laraia~  234 (733)
T TIGR01243       209 IEPPKGVLLYGPPGTGKTLLAKAVAN  234 (733)
T ss_pred             CCCCceEEEECCCCCChHHHHHHHHH
Confidence            57888999999999999999999864

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK06904 replicative DNA helicase; Validated

Probab=94.84  E-value=0.021  Score=55.51  Aligned_cols=39  Identities=10%  Similarity=0.037  Sum_probs=32.7

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -..-|+++.|=++||++++|-||||.|||+|.--++.-+
T Consensus       207 G~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~  245 (472)
T PRK06904        207 GFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENA  245 (472)
T ss_pred             ChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            356688888889999999999999999999986665543

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.82  E-value=0.021  Score=57.26  Aligned_cols=26  Identities=4%  Similarity=-0.354  Sum_probs=22.9

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      =.++++++++||||+|||||-+.|+=
T Consensus       100 ~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455        100 EEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHH
Confidence            34778999999999999999999874

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=94.81  E-value=0.023  Score=53.17  Aligned_cols=31  Identities=10%  Similarity=-0.061  Sum_probs=26.7

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|=|.+|.+|.|-|+||||||+|.-.+++-+
T Consensus       120 gGGi~~G~ItEI~G~~GsGKTql~lqlav~~  150 (344)
T PLN03187        120 GGGIETRCITEAFGEFRSGKTQLAHTLCVTT  150 (344)
T ss_pred             CCCCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence            4568899999999999999999997776654

>PRK12288 GTPase RsgA; Reviewed

Probab=94.80  E-value=0.016  Score=54.19  Aligned_cols=21  Identities=5%  Similarity=0.032  Sum_probs=18.8

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++.++|+||.|||||+++|.
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll  226 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALL  226 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhc
Confidence            467899999999999999984

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=94.80  E-value=0.024  Score=51.79  Aligned_cols=31  Identities=13%  Similarity=-0.076  Sum_probs=25.9

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|=+.+|.+|+|.|+||||||+|.--++.-+
T Consensus        96 ~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~  126 (317)
T PRK04301         96 GGGIETQSITEFYGEFGSGKTQICHQLAVNV  126 (317)
T ss_pred             cCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence            4556789999999999999999988776544

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.78  E-value=0.023  Score=56.39  Aligned_cols=24  Identities=13%  Similarity=-0.108  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++|+||-||+|+||||.+|+|+=
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLsk  132 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSK  132 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHH
Confidence            578999999999999999999874

>PLN02674 adenylate kinase

Probab=94.69  E-value=0.025  Score=50.56  Aligned_cols=21  Identities=0%  Similarity=-0.488  Sum_probs=17.7

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -.+|+|+|||||+|.-+.|+=
T Consensus        33 ~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         33 RLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999887753

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=94.69  E-value=0.022  Score=54.98  Aligned_cols=26  Identities=8%  Similarity=-0.189  Sum_probs=22.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|++=+|+.||||+|||++.|+++-
T Consensus       214 i~~p~gVLL~GPPGTGKT~LAraIA~  239 (438)
T PTZ00361        214 IKPPKGVILYGPPGTGKTLLAKAVAN  239 (438)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46777788999999999999999875

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.68  E-value=0.036  Score=53.71  Aligned_cols=27  Identities=7%  Similarity=-0.066  Sum_probs=23.1

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|+.+++|.|+.||||||+|.+|....
T Consensus        25 ~~~g~~~i~G~NG~GKStll~aI~~~l   51 (562)
T PHA02562         25 DKVKKTLITGKNGAGKSTMLEALTFAL   51 (562)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            345699999999999999999998654

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=94.65  E-value=0.025  Score=51.67  Aligned_cols=29  Identities=7%  Similarity=-0.298  Sum_probs=25.4

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +-.+.|+....|.|.|||||||+-+.|+-
T Consensus       127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~  155 (309)
T PRK08154        127 GRRAARRRRIALIGLRGAGKSTLGRMLAA  155 (309)
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHHH
Confidence            44578999999999999999999999863

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=94.64  E-value=0.024  Score=53.44  Aligned_cols=20  Identities=10%  Similarity=-0.194  Sum_probs=17.8

Q ss_pred             eEEEEecCCCCCchhHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L  217 (231)
                      ++++++||+|+|||||...|
T Consensus        89 rIl~L~GPvg~GKSsl~~~L  108 (358)
T PF08298_consen   89 RILLLLGPVGGGKSSLAELL  108 (358)
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47899999999999998876

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK12289 GTPase RsgA; Reviewed

Probab=94.63  E-value=0.021  Score=53.48  Aligned_cols=21  Identities=5%  Similarity=0.034  Sum_probs=18.9

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++.++|+||.|||||++.|.
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~  193 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLI  193 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHc
Confidence            368999999999999999985

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=94.61  E-value=0.027  Score=48.29  Aligned_cols=27  Identities=7%  Similarity=-0.253  Sum_probs=22.7

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .+++-+++.|+||+|||+|+++++--+
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            456778999999999999999987543

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=94.59  E-value=0.018  Score=55.72  Aligned_cols=31  Identities=19%  Similarity=0.046  Sum_probs=24.4

Q ss_pred             ccc-ceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      |+. +.|=+-||..|||.|+||+|||||.--.
T Consensus       252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f  283 (484)
T TIGR02655       252 LDEMCGGGFFKDSIILATGATGTGKTLLVSKF  283 (484)
T ss_pred             HHHHhcCCccCCcEEEEECCCCCCHHHHHHHH
Confidence            444 3455789999999999999999976443

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=94.59  E-value=0.024  Score=55.00  Aligned_cols=33  Identities=12%  Similarity=0.011  Sum_probs=27.2

Q ss_pred             ccccce-eEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      =|+++- |=+.+|+++||.|+||+|||||...++
T Consensus        19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~   52 (509)
T PRK09302         19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFL   52 (509)
T ss_pred             hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            466663 568899999999999999999987664

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.53  E-value=0.036  Score=55.57  Aligned_cols=32  Identities=9%  Similarity=-0.048  Sum_probs=24.4

Q ss_pred             cceeEEeCCe-EEEEecCCCCCchhHHHHHHHH
Q 037424          189 RVSGILKPGS-VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       189 dVSGiiKPGe-MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|+-...+|+ +++|.|+.||||||||+++.++
T Consensus        19 ~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~   51 (650)
T TIGR03185        19 TFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLA   51 (650)
T ss_pred             eeeeecCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3333334444 8899999999999999999764

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=94.51  E-value=0.07  Score=51.67  Aligned_cols=35  Identities=6%  Similarity=-0.146  Sum_probs=30.7

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      ...++++||--|++||.+.|.|-+|||||-...++
T Consensus        22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~si   56 (534)
T COG4172          22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSI   56 (534)
T ss_pred             ceEeeccceeeecCCCEEEEEecCCCCccHHHHHH
Confidence            35689999999999999999999999999765554

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=94.43  E-value=0.03  Score=53.75  Aligned_cols=34  Identities=9%  Similarity=-0.081  Sum_probs=29.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+++ .+-.+.+|+.+.|+|++|+||||||+.|.
T Consensus       128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~  161 (418)
T TIGR03498       128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLA  161 (418)
T ss_pred             cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHh
Confidence            34554 68899999999999999999999999876

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=94.42  E-value=0.028  Score=45.29  Aligned_cols=27  Identities=30%  Similarity=0.134  Sum_probs=23.2

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++||.+.++=|+=|||||||-|.|+-
T Consensus        11 ~l~~g~vi~L~GdLGaGKTtf~r~l~~   37 (123)
T PF02367_consen   11 ILKPGDVILLSGDLGAGKTTFVRGLAR   37 (123)
T ss_dssp             HHSS-EEEEEEESTTSSHHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999999998764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK08840 replicative DNA helicase; Provisional

Probab=94.40  E-value=0.027  Score=54.62  Aligned_cols=39  Identities=10%  Similarity=-0.023  Sum_probs=32.2

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +-.+-|+.+.|=++||++++|-||||.|||||.=-|+.-
T Consensus       202 TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~  240 (464)
T PRK08840        202 TGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCEN  240 (464)
T ss_pred             CCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHH
Confidence            446679998877999999999999999999998544443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.37  E-value=0.046  Score=52.30  Aligned_cols=28  Identities=11%  Similarity=-0.253  Sum_probs=25.0

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+.+|+++++.||+|+||||++..|+.-
T Consensus       202 ~~~~~~ii~lvGptGvGKTTt~akLA~~  229 (407)
T PRK12726        202 DLSNHRIISLIGQTGVGKTTTLVKLGWQ  229 (407)
T ss_pred             eecCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999998853

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=94.36  E-value=0.04  Score=49.73  Aligned_cols=27  Identities=15%  Similarity=-0.080  Sum_probs=22.4

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.|+..+++||+|+||||++..|+.-+
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999998776543

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=94.35  E-value=0.031  Score=57.41  Aligned_cols=23  Identities=13%  Similarity=-0.100  Sum_probs=19.9

Q ss_pred             EEEEecCCCCCchhHHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -++|+|+||||||||++.|..-+
T Consensus       443 n~~I~G~tGsGKS~l~~~l~~~~  465 (811)
T PRK13873        443 HTLVVGPTGAGKSVLLALMALQF  465 (811)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999966543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.34  E-value=0.027  Score=61.61  Aligned_cols=35  Identities=6%  Similarity=-0.258  Sum_probs=27.7

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      .+.+-.+.|| +++|+|+.||||||+|++|..+..+
T Consensus        19 ~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~   53 (1486)
T PRK04863         19 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIP   53 (1486)
T ss_pred             cceEEEecCC-eEEEECCCCCCHHHHHHHHHccccC
Confidence            3445556666 8899999999999999999876654

>PRK06820 type III secretion system ATPase; Validated

Probab=94.26  E-value=0.044  Score=53.01  Aligned_cols=35  Identities=9%  Similarity=-0.070  Sum_probs=31.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+|+++ -.+..|+-++++|++|+|||||++.|+-
T Consensus       151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~  185 (440)
T PRK06820        151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCA  185 (440)
T ss_pred             Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhc
Confidence            5678888 8899999999999999999999997753

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=94.23  E-value=0.031  Score=54.56  Aligned_cols=27  Identities=22%  Similarity=0.068  Sum_probs=21.8

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +..--.|+       ||-|+||+|||||-++|+=
T Consensus       259 L~eraeGI-------LIAG~PGaGKsTFaqAlAe  285 (604)
T COG1855         259 LEERAEGI-------LIAGAPGAGKSTFAQALAE  285 (604)
T ss_pred             HHhhhcce-------EEecCCCCChhHHHHHHHH
Confidence            44456776       5999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 49/235 (20%)

Query: 24  LKSSFRLQT--SSFRSSSAISSR-REDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKD 80
           L S  + +    S  +   I  R R   D +   ++  + RL  Y +L+ +L ++   K+
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKN 152

Query: 81  LVDN----QGKQ--AINVTK----LGALERHVFIEKLIK-HIEHDNLQLLRKIRKRMDKV 129
           ++ +     GK   A++V         ++  +F   L   +     L++L+K+  ++D  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 130 GVKLPTIEVRYK---NLWVEAKCEVVHGKPLP------------TLWNSFKGMISVLPKL 174
                      K   +        ++  KP                WN+F          
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---------- 262

Query: 175 SGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVF-----QVLFLLVLWC 224
               +L  KI +  R   +    S      ++  H          + L L  L C
Sbjct: 263 ----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.68
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.59
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.57
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.52
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.51
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.51
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.51
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.5
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.5
1g6h_A	257	High-affinity branched-chain amino acid transport	98.5
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.49
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.48
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.47
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.47
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.46
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.46
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.46
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.46
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.45
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.45
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.45
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.38
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.38
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.36
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.35
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.35
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.34
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.34
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.33
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.33
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.3
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.29
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.29
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.28
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.27
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.26
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.22
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.21
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.12
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.09
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.08
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.06
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.01
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.99
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.91
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.88
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.88
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.84
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.82
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.78
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.76
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.76
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.75
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.75
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.71
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.69
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.67
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.67
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.67
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.66
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.66
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.66
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.63
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.61
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.6
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.6
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.59
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.58
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.56
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.56
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.56
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.56
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.55
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.55
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.53
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.5
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.49
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.47
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.47
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.44
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.44
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.43
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.43
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.42
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.37
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.36
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.35
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.35
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.33
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.33
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.31
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.3
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.29
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.21
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.2
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.19
2og2_A	359	Putative signal recognition particle receptor; nuc	97.17
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.17
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.16
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.13
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.12
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.07
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.0
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.99
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.99
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.98
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.97
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.97
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.96
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.96
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.95
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.93
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.91
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.91
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.9
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.87
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.8
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.79
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.79
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.79
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.77
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.76
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.74
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.73
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.66
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.65
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.64
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.63
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.59
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.58
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.58
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.57
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.53
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.48
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.45
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.41
3bos_A	242	Putative DNA replication factor; P-loop containing	96.36
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.35
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.32
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.22
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.22
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.13
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.08
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.06
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.04
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.03
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.01
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.01
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.99
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.98
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.97
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.91
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.9
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.85
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.78
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.78
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.78
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.75
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.72
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.68
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.66
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.57
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.51
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.5
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.48
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.47
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.43
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.41
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.4
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.33
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.31
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.24
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.19
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.15
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.09
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.09
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.09
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.06
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.04
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.04
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.03
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.03
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.02
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.01
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.98
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.94
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.94
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.93
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.91
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.87
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	94.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	94.84
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.83
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.77
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.58
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.55
3ice_A	422	Transcription termination factor RHO; transcriptio	94.52
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.49
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.48
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.46
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.45
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.3
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.3
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.29
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.23
2qgz_A	308	Helicase loader, putative primosome component; str	94.22
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	94.1
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.1
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.04
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.04
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.02
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	93.99
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.98
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.95
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.77
3pvs_A	447	Replication-associated recombination protein A; ma	93.72
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.72
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.71
2r44_A	331	Uncharacterized protein; putative ATPase, structur	93.66
3io5_A	333	Recombination and repair protein; storage dimer, i	93.65
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	93.61
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	93.58
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	93.58
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	93.57
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	93.56
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	93.54
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.44
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.39
3co5_A	143	Putative two-component system transcriptional RES	93.38
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	93.36
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.31
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	93.28
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.26
2fna_A	357	Conserved hypothetical protein; structural genomic	93.15
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.09
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	93.0
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	92.95
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.93
1tue_A	212	Replication protein E1; helicase, replication, E1E	92.89
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	92.88
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	92.74
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	92.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	92.57
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	92.56
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	92.55
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	92.45
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	92.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	92.44
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	92.43
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	92.38
2chq_A	319	Replication factor C small subunit; DNA-binding pr	92.35
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	92.28
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	92.22
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.17
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	92.14
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	91.97
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	91.97
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.93
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.83
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	91.73
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	91.67
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	91.66
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	91.66
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.62
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	91.5
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.5
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	91.48
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	91.45
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	91.36
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	91.33
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	91.22
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	91.11
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	91.0
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	90.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	90.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	90.71
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	90.71
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.34
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	90.34
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	90.29
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	90.24
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	90.18
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	89.84
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	89.83
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	89.55
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	89.5
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	89.49
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	89.37
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	88.98
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	88.97
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	88.93
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	88.91
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	88.91
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	88.9
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	88.51
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	88.4
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	88.38
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	88.13
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	87.28
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	87.15
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	86.78
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	86.7
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	86.44
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	85.93
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	85.24
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	84.78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	84.67
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	84.16
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	83.77
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	83.48
2xxa_A	433	Signal recognition particle protein; protein trans	81.68
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	81.0

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.68  E-value=1.8e-08  Score=86.74  Aligned_cols=36  Identities=14%  Similarity=-0.020  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|+||+++.|+||.|||||||||+|.-
T Consensus        18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            569999999999999999999999999999999863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.59  E-value=4.2e-08  Score=86.18  Aligned_cols=36  Identities=14%  Similarity=-0.004  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|+||+++.|+||.|||||||||+|+-
T Consensus        24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred             eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence            458999999999999999999999999999999863

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.57  E-value=4.4e-08  Score=85.90  Aligned_cols=37  Identities=19%  Similarity=-0.035  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.||+|||-.|++|+++.|+||.|||||||||+|+-+
T Consensus        33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.55  E-value=2.7e-08  Score=84.91  Aligned_cols=36  Identities=19%  Similarity=0.043  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus        17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred             EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999863

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.52  E-value=3.9e-08  Score=84.83  Aligned_cols=35  Identities=20%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|+||+++.|+||.|||||||||+|+
T Consensus        15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (243)
T 1mv5_A           15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE   49 (243)
T ss_dssp             SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred             CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.51  E-value=3.8e-08  Score=84.80  Aligned_cols=35  Identities=11%  Similarity=0.017  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|+||+++.|+||+|||||||||+|+
T Consensus        18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (237)
T 2cbz_A           18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL   52 (237)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999999999999999999985

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.51  E-value=5e-08  Score=84.58  Aligned_cols=37  Identities=16%  Similarity=-0.039  Sum_probs=34.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..||+|||-.|++|+++.|+||.|||||||||+|+-+
T Consensus        16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999999999999999999999998743

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.51  E-value=4.2e-08  Score=85.13  Aligned_cols=36  Identities=14%  Similarity=-0.040  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus        22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999863

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.50  E-value=4.6e-08  Score=83.75  Aligned_cols=35  Identities=9%  Similarity=0.079  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|++|+++.|+||.|||||||||+|+
T Consensus        21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   55 (229)
T 2pze_A           21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM   55 (229)
T ss_dssp             CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.50  E-value=4.6e-08  Score=84.35  Aligned_cols=36  Identities=6%  Similarity=-0.073  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999999999999999999863

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.50  E-value=3.9e-08  Score=85.57  Aligned_cols=35  Identities=20%  Similarity=0.048  Sum_probs=33.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999999999999999863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.49  E-value=4.6e-08  Score=85.57  Aligned_cols=36  Identities=14%  Similarity=-0.007  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.48  E-value=1.5e-07  Score=86.90  Aligned_cols=38  Identities=21%  Similarity=0.106  Sum_probs=34.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...+|+|||-.|++|+++.|+||+|||||||||+|.-+
T Consensus        40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence            35699999999999999999999999999999998743

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.47  E-value=5.1e-08  Score=83.24  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|||-.|++|+++.|+||.|||||||||+|+
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~   56 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS   56 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999999999999999999999985

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.47  E-value=5.5e-08  Score=85.48  Aligned_cols=36  Identities=14%  Similarity=0.136  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence            358999999999999999999999999999999863

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.47  E-value=5.7e-08  Score=84.97  Aligned_cols=36  Identities=11%  Similarity=-0.028  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999863

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.46  E-value=5.9e-08  Score=85.37  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus        32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            458999999999999999999999999999999863

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.46  E-value=6.2e-08  Score=85.72  Aligned_cols=35  Identities=17%  Similarity=0.022  Sum_probs=33.0

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            48999999999999999999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.46  E-value=6e-08  Score=84.74  Aligned_cols=36  Identities=11%  Similarity=0.037  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus        33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            459999999999999999999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.46  E-value=6.8e-08  Score=85.49  Aligned_cols=35  Identities=17%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|++|+++.|+||.|||||||||+|+
T Consensus        34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~   68 (279)
T 2ihy_A           34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN   68 (279)
T ss_dssp             EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            35899999999999999999999999999999986

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.45  E-value=7.1e-08  Score=84.06  Aligned_cols=35  Identities=9%  Similarity=-0.000  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus        18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~   52 (253)
T 2nq2_C           18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL   52 (253)
T ss_dssp             TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHT
T ss_pred             CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.45  E-value=6.6e-08  Score=84.67  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=33.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            458999999999999999999999999999999863

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.45  E-value=7.6e-08  Score=83.85  Aligned_cols=34  Identities=12%  Similarity=0.032  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~   47 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA   47 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            5899999999999999999999999999999986

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.38  E-value=1.6e-07  Score=86.30  Aligned_cols=36  Identities=8%  Similarity=-0.090  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus        28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            458999999999999999999999999999999873

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.38  E-value=1.4e-07  Score=86.77  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++||++.|+||+|||||||||+|+-
T Consensus        17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence            458999999999999999999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.36  E-value=1.1e-07  Score=83.05  Aligned_cols=40  Identities=10%  Similarity=-0.134  Sum_probs=36.2

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ...+|++++|-++||++++|+||||||||||++.|+..+.
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999987653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.35  E-value=1.9e-07  Score=85.79  Aligned_cols=36  Identities=14%  Similarity=-0.063  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence            458999999999999999999999999999999873

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.35  E-value=1.6e-07  Score=83.66  Aligned_cols=35  Identities=9%  Similarity=0.079  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus        51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~   85 (290)
T 2bbs_A           51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM   85 (290)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred             ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            35899999999999999999999999999999985

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.34  E-value=2.1e-07  Score=85.78  Aligned_cols=36  Identities=8%  Similarity=-0.025  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++|+++.|+||+|||||||||+|+-
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence            458999999999999999999999999999999873

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.34  E-value=2.1e-07  Score=86.33  Aligned_cols=36  Identities=3%  Similarity=-0.073  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++||++.|+||+|||||||||+|+=
T Consensus        16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence            458999999999999999999999999999999873

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.33  E-value=2.2e-07  Score=85.41  Aligned_cols=36  Identities=11%  Similarity=-0.054  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence            458999999999999999999999999999999873

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.33  E-value=2.3e-07  Score=85.60  Aligned_cols=36  Identities=8%  Similarity=0.011  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus        24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            458999999999999999999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.30  E-value=1.5e-07  Score=84.58  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|||-.|+||+++.|+||+|||||||||+|+
T Consensus        68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF  101 (306)
T ss_dssp             EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence            4899999999999999999999999999999985

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.29  E-value=1.5e-07  Score=76.68  Aligned_cols=37  Identities=0%  Similarity=-0.361  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+++++|-.|+||+++.|+||.|||||||+|+|+=+
T Consensus        20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4589999999999999999999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.29  E-value=3.1e-07  Score=85.23  Aligned_cols=36  Identities=17%  Similarity=0.009  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++|+++.|+||+|||||||||+|+=
T Consensus        34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence            458999999999999999999999999999999873

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.28  E-value=2.7e-07  Score=80.99  Aligned_cols=35  Identities=6%  Similarity=-0.141  Sum_probs=32.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|+ |+.+.|+||.|||||||||+|+=
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence            458999999999 99999999999999999999863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.27  E-value=1.9e-07  Score=85.38  Aligned_cols=34  Identities=9%  Similarity=-0.113  Sum_probs=32.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence            8999999999999999999999999999999873

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.26  E-value=2.6e-07  Score=84.47  Aligned_cols=34  Identities=12%  Similarity=-0.082  Sum_probs=32.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence            8999999999999999999999999999999873

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.21  E-value=2e-07  Score=83.88  Aligned_cols=37  Identities=11%  Similarity=-0.173  Sum_probs=34.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|||-.|+||+++.|+||+|||||||+|+|.=+
T Consensus       113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            4699999999999999999999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.12  E-value=9.6e-07  Score=74.24  Aligned_cols=35  Identities=11%  Similarity=-0.056  Sum_probs=22.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++.+++|-.+++|+++.|+||+||||||++|.|.
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHH
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence            34678999999999999999999999999999987

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.08  E-value=1.3e-06  Score=84.08  Aligned_cols=35  Identities=6%  Similarity=-0.050  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|+||+|||||||+|.|.
T Consensus       356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~  390 (582)
T 3b60_A          356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT  390 (582)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999985

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.08  E-value=1.6e-06  Score=83.40  Aligned_cols=36  Identities=11%  Similarity=-0.106  Sum_probs=33.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|+||+.+.|+||+|||||||+|.|.=
T Consensus       356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999999999999999863

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.06  E-value=1.2e-06  Score=83.17  Aligned_cols=38  Identities=13%  Similarity=-0.060  Sum_probs=34.0

Q ss_pred             ccccccccee-EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          183 KINILNRVSG-ILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       183 ~~~IL~dVSG-iiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...+|+||++ -|.+|++++|+|+||||||||+|.+.+.
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~   62 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN   62 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3668999997 9999999999999999999999997543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.03  E-value=2e-06  Score=83.21  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=32.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|+||+|||||||+|.|.
T Consensus       368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~  402 (598)
T 3qf4_B          368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM  402 (598)
T ss_dssp             SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred             CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            35899999999999999999999999999999885

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.01  E-value=1.2e-05  Score=82.53  Aligned_cols=35  Identities=11%  Similarity=-0.116  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.||+|+|-.|++|+.+.|+||.|||||||||+|+
T Consensus       448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999999999999999999999997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.00  E-value=2e-06  Score=82.49  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=32.0

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+||| .|+|||.+.|+||.|||||||||+|+=
T Consensus        36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred             ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4899999 999999999999999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.99  E-value=1.7e-06  Score=83.22  Aligned_cols=35  Identities=9%  Similarity=-0.006  Sum_probs=32.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+++.|+||+|||||||+|.|.
T Consensus       354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~  388 (578)
T 4a82_A          354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIP  388 (578)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred             CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence            45899999999999999999999999999999764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.97  E-value=2.1e-06  Score=82.92  Aligned_cols=35  Identities=20%  Similarity=0.066  Sum_probs=32.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+.+.|+||+|||||||+|.|.
T Consensus       356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  390 (587)
T 3qf4_A          356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP  390 (587)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999999999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.91  E-value=3e-06  Score=82.64  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=31.9

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|+| .|+||+.+.|+||.|||||||||+|+=
T Consensus       106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A          106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhC
Confidence            4899999 999999999999999999999999863

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.90  E-value=2.6e-06  Score=76.90  Aligned_cols=37  Identities=8%  Similarity=-0.124  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|++++-.+++|+++.|+|+|||||||||+.|.-+
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4589999999999999999999999999999998744

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.88  E-value=5e-06  Score=81.13  Aligned_cols=35  Identities=11%  Similarity=0.004  Sum_probs=32.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|||-.|++|+++.|+||+|||||||||+|.
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            45799999999999999999999999999999874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.88  E-value=2.8e-06  Score=79.91  Aligned_cols=34  Identities=21%  Similarity=0.038  Sum_probs=31.3

Q ss_pred             cccceeEEeCCeE--EEEecCCCCCchhHHHHHHHH
Q 037424          187 LNRVSGILKPGSV--NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       187 L~dVSGiiKPGeM--TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |+|||-.|++|+.  +.|+||+|||||||||+|+-+
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            9999999999999  999999999999999999754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.84  E-value=2.1e-06  Score=78.18  Aligned_cols=33  Identities=9%  Similarity=-0.003  Sum_probs=31.0

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++++++-.|+||++++|.||+|||||||||+|.
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence            459999999999999999999999999999985

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.82  E-value=1.4e-06  Score=78.68  Aligned_cols=33  Identities=6%  Similarity=-0.066  Sum_probs=31.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|++++-.++||++++|+||+|||||||||+|.
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~  192 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM  192 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHh
Confidence            899999999999999999999999999999975

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.78  E-value=2.9e-06  Score=79.31  Aligned_cols=36  Identities=17%  Similarity=0.025  Sum_probs=33.8

Q ss_pred             cccccccceeEEeCCe--------------------EEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGS--------------------VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGe--------------------MTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...+|+|++-.|++|+                    .+.|+||||||||||||+|+
T Consensus        35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~   90 (413)
T 1tq4_A           35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR   90 (413)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence            4569999999999999                    99999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.76  E-value=1.2e-05  Score=78.25  Aligned_cols=34  Identities=15%  Similarity=-0.012  Sum_probs=31.0

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|+++++.|++||++.|+||.|||||||||+|+=
T Consensus       371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~G  404 (607)
T 3bk7_A          371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG  404 (607)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEecccccCCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4778888899999999999999999999999873

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.76  E-value=6.6e-06  Score=84.39  Aligned_cols=36  Identities=8%  Similarity=-0.236  Sum_probs=33.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.||+|+|-.|++|+.+.|+||.|||||||||+|+-
T Consensus       686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaG  721 (986)
T 2iw3_A          686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG  721 (986)
T ss_dssp             SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred             ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999999999999999999963

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.75  E-value=1.1e-05  Score=84.58  Aligned_cols=35  Identities=23%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|+||+.+.|.||+|||||||++.|+
T Consensus      1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A         1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp             SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred             CccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence            45899999999999999999999999999999885

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.75  E-value=7.3e-06  Score=75.01  Aligned_cols=33  Identities=6%  Similarity=-0.143  Sum_probs=29.6

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +|++++  ++||++++|.||+||||||+|++|.=+
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            678877  899999999999999999999998654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.72  E-value=6.2e-06  Score=76.10  Aligned_cols=36  Identities=8%  Similarity=-0.141  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|++++-.+++|+.++|.||||||||||+|+|+-
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            568999999999999999999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.71  E-value=1.6e-05  Score=76.14  Aligned_cols=33  Identities=18%  Similarity=0.034  Sum_probs=30.2

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .|++++..|++||++.|+||.|||||||||+|+
T Consensus       301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~  333 (538)
T 1yqt_A          301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLA  333 (538)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeCccccCCCCEEEEECCCCCCHHHHHHHHh
Confidence            467777788999999999999999999999987

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.70  E-value=1.6e-05  Score=77.60  Aligned_cols=32  Identities=9%  Similarity=0.037  Sum_probs=30.2

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVF  214 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlL  214 (231)
                      ..++|+|||-.|++|+++.|+||.||||||||
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            35689999999999999999999999999997

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.69  E-value=1.5e-05  Score=76.50  Aligned_cols=33  Identities=15%  Similarity=-0.036  Sum_probs=29.9

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .|+++++.|++||++.|+||.|||||||||+|+
T Consensus       283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~  315 (538)
T 3ozx_A          283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILV  315 (538)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEeccceECCCCEEEEECCCCCCHHHHHHHHh
Confidence            466677889999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.67  E-value=1.4e-05  Score=83.64  Aligned_cols=35  Identities=14%  Similarity=0.031  Sum_probs=32.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|||-.|+||+.+.|+||+|||||||+|.|.
T Consensus       403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~  437 (1284)
T 3g5u_A          403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ  437 (1284)
T ss_dssp             CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred             CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.67  E-value=2.1e-05  Score=74.91  Aligned_cols=36  Identities=6%  Similarity=-0.280  Sum_probs=33.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+|+|-.|++ +++.|+||+|||||||||+|+-+
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence            4579999999999 99999999999999999999865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.67  E-value=1.8e-05  Score=83.07  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=32.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|+|-.|+||+++.|.||+|||||||++.|.
T Consensus       431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~  465 (1321)
T 4f4c_A          431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL  465 (1321)
T ss_dssp             SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHT
T ss_pred             CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhc
Confidence            46899999999999999999999999999999873

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.67  E-value=1.9e-05  Score=64.88  Aligned_cols=26  Identities=4%  Similarity=-0.219  Sum_probs=22.5

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++|+++.|+|+|||||||++|.|+=
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999999963

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.66  E-value=1.9e-05  Score=68.34  Aligned_cols=28  Identities=11%  Similarity=-0.191  Sum_probs=25.7

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      -+.+|++++|.||||||||||++.|+..
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999998864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.66  E-value=1.3e-05  Score=72.56  Aligned_cols=35  Identities=9%  Similarity=0.024  Sum_probs=30.2

Q ss_pred             ccccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      -|+++ .|-|.+|++++|.||||||||||++.|+..
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35555 588999999999999999999999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.66  E-value=9.1e-06  Score=71.08  Aligned_cols=34  Identities=6%  Similarity=-0.139  Sum_probs=30.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..++++++-.+.+|  +||.||||+|||||+|+|+-
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence            45889999888888  89999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.63  E-value=1.2e-05  Score=75.19  Aligned_cols=34  Identities=15%  Similarity=0.049  Sum_probs=30.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+++  ..+||++++|.||+||||||||++|.=
T Consensus       156 ~~~L~~l--~~~~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          156 HDNFRRL--IKRPHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             HHHHHHH--HTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHHHH--HHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence            5588888  458999999999999999999999864

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.61  E-value=2.5e-05  Score=79.75  Aligned_cols=40  Identities=13%  Similarity=-0.103  Sum_probs=36.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      ..|++|++-.+.+|++++|+||.|||||||||+++++++.
T Consensus       649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~  688 (934)
T 3thx_A          649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM  688 (934)
T ss_dssp             CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4588999999999999999999999999999999877654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.60  E-value=8.9e-06  Score=73.80  Aligned_cols=37  Identities=16%  Similarity=0.007  Sum_probs=34.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.+|+|++-.+.|| ++.|+|+.||||||||++|.++.
T Consensus        48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999 99999999999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.60  E-value=2.9e-05  Score=81.30  Aligned_cols=35  Identities=23%  Similarity=0.044  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|||-.|+|||.+.|+||.|||||||+|+|+
T Consensus      1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A         1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp             CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred             CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35999999999999999999999999999999986

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.59  E-value=1.7e-05  Score=80.80  Aligned_cols=40  Identities=8%  Similarity=-0.047  Sum_probs=36.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      ..|++||+-.+.+|++++|+||.|||||||||++.++++.
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~  699 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM  699 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999887654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.58  E-value=7.6e-06  Score=71.31  Aligned_cols=36  Identities=17%  Similarity=0.082  Sum_probs=33.6

Q ss_pred             ccccccceeEEeC---CeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKP---GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKP---GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|+|-.|++   |+.+.|.|+|||||||+.|.|+=
T Consensus        32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999   99999999999999999999974

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.56  E-value=4.8e-05  Score=60.95  Aligned_cols=33  Identities=6%  Similarity=0.002  Sum_probs=28.2

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++++-.+.|| +++|.|+.||||||||++|..+.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            3566677788 99999999999999999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.56  E-value=2.6e-05  Score=76.08  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=29.1

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|++++ .++||+++.|+||.|||||||||+|+-
T Consensus        93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B           93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred             eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhc
Confidence            566666 689999999999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.56  E-value=1.3e-05  Score=70.94  Aligned_cols=26  Identities=12%  Similarity=-0.102  Sum_probs=24.1

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++|+++.|+|++|||||||+|.|.-+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999999998754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.56  E-value=3.7e-05  Score=77.19  Aligned_cols=38  Identities=11%  Similarity=-0.066  Sum_probs=34.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ..|++|++-. ++|++++|+||.|||||||||+|+++++
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            4589999988 9999999999999999999999998764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.55  E-value=1.7e-05  Score=67.20  Aligned_cols=33  Identities=6%  Similarity=-0.060  Sum_probs=29.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++++++..+.+|  ++|.||||+|||||+|+|+-
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence            5788999888888  88999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.55  E-value=1.9e-05  Score=72.16  Aligned_cols=33  Identities=15%  Similarity=0.070  Sum_probs=28.3

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +|+++  .++||.+++|.||+||||||||++|.=.
T Consensus       114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            56666  6789999999999999999999998643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.53  E-value=3.8e-05  Score=61.29  Aligned_cols=34  Identities=9%  Similarity=-0.075  Sum_probs=28.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ....|+++     +|+.+++.||||+|||||+++|+-.+
T Consensus        27 ~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           27 LVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             HHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             HHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567777     89999999999999999999988654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.50  E-value=1.7e-05  Score=74.82  Aligned_cols=34  Identities=6%  Similarity=-0.140  Sum_probs=30.6

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|+|-.+++|+.++|+||.|||||||||+|+=++
T Consensus       129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            4788889999999999999999999999997554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.50  E-value=5.1e-05  Score=67.95  Aligned_cols=27  Identities=11%  Similarity=-0.185  Sum_probs=25.0

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +++|+++.|+||+|||||||+|.|.-+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            689999999999999999999998765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.49  E-value=2.2e-05  Score=67.68  Aligned_cols=35  Identities=6%  Similarity=-0.108  Sum_probs=30.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..++++++..+.+|  ++|.||||+|||||+|+|+-.
T Consensus        62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence            35788999888888  889999999999999998743

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.47  E-value=3.4e-05  Score=70.21  Aligned_cols=36  Identities=3%  Similarity=-0.186  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|+++ -.|.+|+.+.|+|++|||||||||.|+=+
T Consensus        59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5689999 99999999999999999999999998754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.47  E-value=3.2e-05  Score=62.17  Aligned_cols=28  Identities=4%  Similarity=-0.228  Sum_probs=24.4

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.+|+.++|.||||+|||||+++|+-.+
T Consensus        35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           35 PEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999987544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.44  E-value=5.3e-05  Score=67.54  Aligned_cols=33  Identities=6%  Similarity=-0.193  Sum_probs=28.9

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++++-.+++|++++++||+||||||+++.|+-+
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            456666899999999999999999999998755

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.44  E-value=6.3e-05  Score=73.37  Aligned_cols=35  Identities=6%  Similarity=-0.117  Sum_probs=30.7

Q ss_pred             cccccceeEEeCC-----eEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVSGILKPG-----SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVSGiiKPG-----eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|+|++-.+++|     |++.|+||.|||||||||+|+=
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G  400 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG  400 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhc
Confidence            4688888888887     7899999999999999999873

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.43  E-value=3.4e-05  Score=72.32  Aligned_cols=36  Identities=6%  Similarity=-0.112  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+|+++ -.|.+|+.+.|+|++|||||||||.|+=+
T Consensus       145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5689999 99999999999999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.43  E-value=6.1e-05  Score=63.80  Aligned_cols=23  Identities=9%  Similarity=-0.380  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++.+.|+|+|||||||++|.|+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999998

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.42  E-value=1.7e-05  Score=75.73  Aligned_cols=35  Identities=6%  Similarity=-0.075  Sum_probs=32.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..++++++-.+++|+.++|+||+||||||||++|.
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~  281 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIM  281 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.37  E-value=5.7e-05  Score=70.36  Aligned_cols=40  Identities=8%  Similarity=-0.009  Sum_probs=35.5

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      -...|+++.|-+.||++++|.||||+|||||+..++.-+.
T Consensus       189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4667999999899999999999999999999998877554

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.36  E-value=4.6e-05  Score=68.77  Aligned_cols=36  Identities=6%  Similarity=-0.155  Sum_probs=32.0

Q ss_pred             cccccceeEEeC--CeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKP--GSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKP--GeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+.+.|+-.|++  |+.+.|+|++|||||||+|.|+=+
T Consensus       156 ~~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          156 QYWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             GGGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence            356788999999  999999999999999999998754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.35  E-value=1.7e-05  Score=70.81  Aligned_cols=36  Identities=14%  Similarity=0.026  Sum_probs=30.6

Q ss_pred             cccccceeEEeCC-------eEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPG-------SVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPG-------eMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++++++-.+++|       +.+++.||||+|||||+|+|+=.
T Consensus        32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4777787777766       78999999999999999999754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.35  E-value=8.8e-05  Score=74.18  Aligned_cols=36  Identities=11%  Similarity=-0.000  Sum_probs=32.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ..|++|++-.   |++++|+||.|||||||||+|+.+++
T Consensus       566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence            4688899876   99999999999999999999998765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.33  E-value=9e-05  Score=70.24  Aligned_cols=35  Identities=17%  Similarity=0.001  Sum_probs=29.7

Q ss_pred             cccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          187 LNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       187 L~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |+.+ +|-|.||++++|.|+||||||||++.++-..
T Consensus       270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3443 6789999999999999999999999987653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.33  E-value=4.5e-05  Score=61.83  Aligned_cols=32  Identities=6%  Similarity=-0.191  Sum_probs=27.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|++  -.+.+|..+.|+|+||||||||++.|.
T Consensus        16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            46777  447899999999999999999999874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.31  E-value=0.0001  Score=75.91  Aligned_cols=39  Identities=13%  Similarity=-0.115  Sum_probs=35.0

Q ss_pred             ccccccceeEEeC-------CeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          184 INILNRVSGILKP-------GSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       184 ~~IL~dVSGiiKP-------GeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ..|++|++-.+.+       |++++|.||.|||||||||+|.++++
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~  814 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAV  814 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            4589999998887       99999999999999999999977664

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.30  E-value=6.9e-05  Score=69.54  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=29.1

Q ss_pred             cccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          187 LNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       187 L~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |+.+ .|=|.||++++|.||||||||||++.|++.+
T Consensus       167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence            4443 3678999999999999999999999886544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.29  E-value=0.00012  Score=70.27  Aligned_cols=33  Identities=12%  Similarity=-0.177  Sum_probs=30.1

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +++|-.+++|++++|+|++|||||||++.|+-+
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence            578888999999999999999999999998754

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.21  E-value=0.0002  Score=65.46  Aligned_cols=36  Identities=11%  Similarity=-0.025  Sum_probs=32.7

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..+++++-.+.|| ++.++||.||||||+|++|..+.
T Consensus        15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence            3568999999999 99999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.20  E-value=0.00012  Score=62.87  Aligned_cols=30  Identities=10%  Similarity=-0.124  Sum_probs=24.1

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++++++   ++|+++.|.|++||||||++|.|+
T Consensus        19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             ----CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             hhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence            455544   789999999999999999999998

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.19  E-value=0.00012  Score=64.98  Aligned_cols=38  Identities=11%  Similarity=-0.092  Sum_probs=32.9

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..-|+++.|=+.||++++|-|+||+|||||+..++.-+
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45688888889999999999999999999988877544

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.17  E-value=0.00019  Score=65.75  Aligned_cols=32  Identities=6%  Similarity=-0.204  Sum_probs=28.2

Q ss_pred             cceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          189 RVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +++-.++||++++|+||+||||||+++.|+-+
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            45556889999999999999999999998865

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.16  E-value=0.0003  Score=71.73  Aligned_cols=43  Identities=14%  Similarity=0.079  Sum_probs=34.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHH-HHHHHHHHHHh
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQ-VLFLLVLWCLH  226 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK-~L~~~~~~~~~  226 (231)
                      .+.|+|||-.|++|+++.|+|+.|||||||++ +|+=.++.+++
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~  640 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLH  640 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHH
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhc
Confidence            35699999999999999999999999999984 34333444443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.13  E-value=8.9e-05  Score=74.96  Aligned_cols=35  Identities=11%  Similarity=0.013  Sum_probs=32.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHH-HH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQV-LF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~-L~  218 (231)
                      ...|+|||-.|++|+++.|.|+.|||||||+|. |+
T Consensus       510 ~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~  545 (842)
T 2vf7_A          510 RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALV  545 (842)
T ss_dssp             ETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred             ecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence            357999999999999999999999999999996 54

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.12  E-value=0.00013  Score=74.75  Aligned_cols=34  Identities=12%  Similarity=0.031  Sum_probs=32.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.|+|||-.|++|+++.|+|+.|||||||++.|.
T Consensus       638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999999999999999999999964

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.07  E-value=0.00028  Score=64.61  Aligned_cols=30  Identities=7%  Similarity=-0.222  Sum_probs=26.7

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |=+.||++++|.||||||||||+..++..+
T Consensus        56 GGi~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999887654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.00  E-value=0.00035  Score=62.31  Aligned_cols=25  Identities=16%  Similarity=-0.031  Sum_probs=23.2

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +|++++|+||+||||||+++.|+-+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            7899999999999999999999854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.99  E-value=0.0003  Score=64.57  Aligned_cols=31  Identities=10%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      |++++-. .+|+.+.|+|+||+|||||+|+|.
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~  236 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALL  236 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHHHHHh
Confidence            4455543 389999999999999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.99  E-value=0.00042  Score=62.56  Aligned_cols=26  Identities=8%  Similarity=-0.224  Sum_probs=24.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +||++++++||+||||||+++.|+-+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.98  E-value=0.0003  Score=62.10  Aligned_cols=23  Identities=9%  Similarity=0.127  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|+++.++|||||||||||++|.
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~  190 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAIN  190 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHS
T ss_pred             cCCeEEEECCCCCcHHHHHHHhc
Confidence            68899999999999999999986

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.97  E-value=0.00026  Score=64.46  Aligned_cols=38  Identities=11%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..-|+.+.|=+.||++++|.||||+|||||+..++.-+
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55678888889999999999999999999998887654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.97  E-value=0.00027  Score=60.46  Aligned_cols=33  Identities=6%  Similarity=-0.157  Sum_probs=26.3

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++++.+ ..+++.+++|.|+|||||||+.+.|+=
T Consensus        22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444444 456778999999999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.96  E-value=0.00024  Score=66.22  Aligned_cols=32  Identities=6%  Similarity=-0.255  Sum_probs=29.9

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++++-.+++|+.+.|+|+|||||||||++|.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Ls  178 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMT  178 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence            37999999999999999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.96  E-value=0.00034  Score=61.92  Aligned_cols=23  Identities=9%  Similarity=0.020  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|+++.|+|++|||||||+|+|.
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999999987

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.95  E-value=0.00011  Score=65.09  Aligned_cols=38  Identities=11%  Similarity=-0.002  Sum_probs=32.4

Q ss_pred             ccccccceeEEeCCeE--EEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSV--NLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeM--TLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..+++.++-.++.|++  +|+.||||+||||++++++=..
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3477778888888998  9999999999999999987654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.93  E-value=0.0001  Score=66.15  Aligned_cols=24  Identities=0%  Similarity=-0.110  Sum_probs=22.4

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+++.|+|+||+|||||+|+|.
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~  194 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAIS  194 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhc
Confidence            479999999999999999999985

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.91  E-value=0.00022  Score=63.99  Aligned_cols=37  Identities=5%  Similarity=-0.126  Sum_probs=31.8

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..++++++-.+++|..+.++|+||+|||||++.|+-.
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4577777777789999999999999999999998643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.91  E-value=0.00041  Score=64.71  Aligned_cols=29  Identities=14%  Similarity=0.031  Sum_probs=25.5

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|+|++-.|      +|+|++|+|||||+++|+
T Consensus        24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           24 KSVKRGFEFTL------MVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             TTCC-CCCEEE------EEECCTTSSHHHHHHHHT
T ss_pred             EEEecCCCEEE------EEECCCCCcHHHHHHHHh
Confidence            56899999887      899999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.90  E-value=0.00069  Score=53.90  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=22.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.|| +++|.||.||||||+|++|..+.
T Consensus        21 f~~g-~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           21 FKEG-INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            3344 99999999999999999998743

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.87  E-value=0.0005  Score=62.36  Aligned_cols=30  Identities=17%  Similarity=-0.165  Sum_probs=26.1

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |=+.||++++|.||||||||||+..++.-+
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999988876544

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.80  E-value=0.00043  Score=64.19  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ..-|+.+.|=+.||++++|.||||+|||||...++.-+.
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456888888899999999999999999999988876554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.79  E-value=0.00062  Score=61.50  Aligned_cols=25  Identities=0%  Similarity=-0.433  Sum_probs=22.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++..+.|+|+|||||||||+.|.-
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4677899999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.79  E-value=0.00048  Score=58.23  Aligned_cols=31  Identities=10%  Similarity=-0.022  Sum_probs=21.1

Q ss_pred             cccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++++++.+.+|  +|+.||||+||||+.|+|+-
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHH
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHH
Confidence            44554444444  88999999999999999874

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.79  E-value=0.00033  Score=66.93  Aligned_cols=36  Identities=6%  Similarity=-0.025  Sum_probs=30.1

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .++++++..+ ||+.+|+.||||+|||||+|+|+-..
T Consensus        97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A           97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3566777666 89999999999999999999997543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.77  E-value=0.00061  Score=61.23  Aligned_cols=34  Identities=9%  Similarity=-0.003  Sum_probs=28.8

Q ss_pred             cccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          187 LNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       187 L~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |+.+- |-+.+|++++|.||||||||||+..++.-
T Consensus       111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44443 67999999999999999999999988764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.76  E-value=0.00047  Score=65.75  Aligned_cols=34  Identities=6%  Similarity=-0.086  Sum_probs=29.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++++++..+.+|  +||.||||+|||||+|+|+-.
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence            4688999888888  889999999999999998743

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.74  E-value=0.00072  Score=55.88  Aligned_cols=35  Identities=11%  Similarity=-0.033  Sum_probs=28.1

Q ss_pred             cccccce-eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          185 NILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       185 ~IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-|+++- |=+.||++++|-|+||+|||||.--++.
T Consensus        17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3466654 5689999999999999999999866554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.73  E-value=0.00069  Score=60.80  Aligned_cols=35  Identities=3%  Similarity=-0.237  Sum_probs=29.7

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++++++-.+++|++++|.|++|+||||++..|+..
T Consensus        94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44677777899999999999999999999998864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.66  E-value=0.00068  Score=62.36  Aligned_cols=30  Identities=0%  Similarity=-0.159  Sum_probs=26.5

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      +.+|+++.|+||.||||||||++|+.+.-.
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            567899999999999999999999987543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.65  E-value=0.00037  Score=62.90  Aligned_cols=22  Identities=14%  Similarity=-0.123  Sum_probs=19.9

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++.|.|++|||||||++.|.-+
T Consensus        94 iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8899999999999999998654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.64  E-value=0.00057  Score=60.73  Aligned_cols=35  Identities=9%  Similarity=-0.118  Sum_probs=29.1

Q ss_pred             ccccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      -|+.+- |-+.+|++++|.|+||||||||...++.-
T Consensus        95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A           95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            355543 67899999999999999999999887754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.63  E-value=0.00098  Score=56.57  Aligned_cols=26  Identities=4%  Similarity=-0.185  Sum_probs=23.0

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++|.+..+.|+|||||||+++.|.=
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            45788999999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.59  E-value=0.00077  Score=59.38  Aligned_cols=35  Identities=17%  Similarity=0.004  Sum_probs=28.9

Q ss_pred             ccccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          186 ILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       186 IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      -|+.+- |-+.||++++|.|+||||||||...++.-
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344444 67899999999999999999999887754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.58  E-value=0.0012  Score=57.96  Aligned_cols=23  Identities=9%  Similarity=-0.065  Sum_probs=20.8

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.+++|.|+|||||||+.+.|+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999985

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.58  E-value=0.00088  Score=54.07  Aligned_cols=20  Identities=0%  Similarity=-0.248  Sum_probs=18.0

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++|+|++|||||||++.|.
T Consensus        31 kv~lvG~~g~GKSTLl~~l~   50 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFT   50 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            46899999999999999875

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.57  E-value=0.00034  Score=67.48  Aligned_cols=37  Identities=8%  Similarity=-0.218  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..++++++-.+++|+.+++.||||+|||||+|+|+-+
T Consensus        47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~   83 (604)
T 3k1j_A           47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL   83 (604)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred             hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            4577889999999999999999999999999999753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.53  E-value=0.001  Score=58.23  Aligned_cols=26  Identities=8%  Similarity=-0.192  Sum_probs=23.5

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|++-+|+.||||+||||+.|+|+-
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHH
Confidence            57888899999999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.48  E-value=0.00088  Score=57.60  Aligned_cols=26  Identities=8%  Similarity=-0.289  Sum_probs=22.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -.|+.-+|+.||||+||||+.++|+=
T Consensus        51 ~~~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           51 RAPAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             GCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            35778889999999999999999863

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.45  E-value=0.00072  Score=65.22  Aligned_cols=28  Identities=11%  Similarity=-0.104  Sum_probs=25.5

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+++|+++.|+|++||||||++|.|+=.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHh
Confidence            4789999999999999999999999754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.41  E-value=0.0014  Score=55.87  Aligned_cols=24  Identities=8%  Similarity=-0.273  Sum_probs=19.9

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +..++.+|+|||||||+|.-+.|+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            444677899999999999988775

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.36  E-value=0.0017  Score=52.91  Aligned_cols=25  Identities=0%  Similarity=-0.369  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++.-++|.||||+|||||++.++--
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5678899999999999999988754

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.35  E-value=0.0012  Score=61.72  Aligned_cols=39  Identities=10%  Similarity=-0.099  Sum_probs=32.9

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -..-|+.+.|=+.||++++|-||||+|||||.--++.-+
T Consensus       183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            355688888779999999999999999999987776644

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.32  E-value=0.002  Score=50.04  Aligned_cols=25  Identities=4%  Similarity=-0.245  Sum_probs=20.8

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+..++|.|+||+||||+++.++=-
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3456789999999999999988654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.22  E-value=0.0027  Score=56.64  Aligned_cols=28  Identities=11%  Similarity=-0.102  Sum_probs=24.9

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .++|+++++.|+|||||||+++.|+-..
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            5789999999999999999999998543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.22  E-value=0.002  Score=54.90  Aligned_cols=26  Identities=8%  Similarity=-0.185  Sum_probs=22.0

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++++.-+|+.||||+||||+.++|+-
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            35666789999999999999999863

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.13  E-value=0.0012  Score=62.38  Aligned_cols=36  Identities=17%  Similarity=-0.009  Sum_probs=32.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +..+++++-.+.|| ++++.|+.||||||||++|.++
T Consensus        48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            44678888889999 9999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.10  E-value=0.003  Score=55.92  Aligned_cols=26  Identities=8%  Similarity=-0.233  Sum_probs=23.5

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++|++++++|++||||||+++.|+..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999998854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.08  E-value=0.0031  Score=55.70  Aligned_cols=27  Identities=4%  Similarity=-0.338  Sum_probs=23.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +++.++.|.|++|||||||.+.|.-..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999886543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.0024  Score=55.77  Aligned_cols=26  Identities=12%  Similarity=-0.095  Sum_probs=22.6

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+++.++|.||||+|||||++.++=.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999987643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.0021  Score=57.05  Aligned_cols=28  Identities=11%  Similarity=-0.238  Sum_probs=24.1

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |..+|.+-+|+.||||+|||+|.++++=
T Consensus        40 ~~~~~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           40 GKRTPWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             TTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCCCCceEEEECCCCccHHHHHHHHHH
Confidence            4467888889999999999999998874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.03  E-value=0.0033  Score=54.01  Aligned_cols=26  Identities=15%  Similarity=-0.083  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |..-+|+.||||+||||+.+.|+-..
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHH
Confidence            55678999999999999999988654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.01  E-value=0.0033  Score=50.34  Aligned_cols=24  Identities=8%  Similarity=-0.107  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..++|.|+||+||||+++.++=-.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999987443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.01  E-value=0.0032  Score=52.63  Aligned_cols=25  Identities=8%  Similarity=-0.314  Sum_probs=21.0

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++..-+|+.||||+|||++.++|+-
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4455678999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.00  E-value=0.00045  Score=59.36  Aligned_cols=24  Identities=4%  Similarity=-0.187  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++++|+||+||||||||++|+-+.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc
Confidence            678899999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.99  E-value=0.0036  Score=53.20  Aligned_cols=23  Identities=9%  Similarity=-0.330  Sum_probs=19.9

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++-...|.|+|||||||+-+.|+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45567899999999999999886

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0031  Score=49.98  Aligned_cols=21  Identities=5%  Similarity=-0.102  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      -.++|+|+||+|||||++.|.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            367899999999999999875

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.97  E-value=0.0039  Score=56.77  Aligned_cols=35  Identities=11%  Similarity=-0.091  Sum_probs=27.8

Q ss_pred             cccce--eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          187 LNRVS--GILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       187 L~dVS--GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |+.+-  |=+.||++++|.|+||+|||||...++.-+
T Consensus        51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44443  458899999999999999999987776543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.91  E-value=0.0034  Score=54.88  Aligned_cols=26  Identities=8%  Similarity=-0.300  Sum_probs=21.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +++...+|+-||||+|||++.++|+=
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556788889999999999999874

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.90  E-value=0.0012  Score=58.01  Aligned_cols=20  Identities=10%  Similarity=-0.295  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+.||||+||||+++.|+=
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998875

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.90  E-value=0.0036  Score=57.02  Aligned_cols=28  Identities=7%  Similarity=-0.136  Sum_probs=24.7

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |-+.||..++|.||||+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            5577899999999999999999988764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.85  E-value=0.0037  Score=52.24  Aligned_cols=19  Identities=5%  Similarity=-0.316  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        32 i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           32 IVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            5788999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.78  E-value=0.0041  Score=54.62  Aligned_cols=25  Identities=4%  Similarity=-0.300  Sum_probs=21.2

Q ss_pred             eCCe--EEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGS--VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGe--MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++.  .++|.||||+|||||++.++=
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3455  899999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.78  E-value=0.0036  Score=48.78  Aligned_cols=25  Identities=4%  Similarity=-0.190  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+.-++|.|+||+||||+++.++--
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3456689999999999999988654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.78  E-value=0.0027  Score=60.11  Aligned_cols=32  Identities=13%  Similarity=-0.065  Sum_probs=25.2

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++++++..+..|  +|+.||||+|||||.|+|+=
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence            456666655555  78999999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.75  E-value=0.0051  Score=49.77  Aligned_cols=24  Identities=0%  Similarity=-0.310  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .-+++.|+||+|||||++.|+--+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999887543

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.74  E-value=0.0021  Score=60.23  Aligned_cols=37  Identities=11%  Similarity=-0.094  Sum_probs=30.6

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..-|+.+.|=+.||++++|-|+||+|||||.--++.-
T Consensus       229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~  265 (503)
T 1q57_A          229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ  265 (503)
T ss_dssp             CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence            4456777666999999999999999999998776653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.72  E-value=0.0029  Score=57.36  Aligned_cols=30  Identities=17%  Similarity=0.080  Sum_probs=25.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.++++++-.|      +|+|++|+|||||++.||.
T Consensus        30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             HHHHHCCEECE------EECCCTTSCHHHHHHHHTT
T ss_pred             eeecCCCCEEE------EEEcCCCCCHHHHHHHHhC
Confidence            45777877765      8999999999999999864

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.68  E-value=0.0056  Score=55.23  Aligned_cols=26  Identities=12%  Similarity=-0.240  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .+.-++|+|+||||||||+|.|....
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999987654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.57  E-value=0.0067  Score=55.46  Aligned_cols=30  Identities=7%  Similarity=-0.105  Sum_probs=25.6

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      |=+.+|++++|.||||+|||||.-.++.-+
T Consensus        69 GGl~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           69 GGIPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            357899999999999999999987776543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.51  E-value=0.0087  Score=52.72  Aligned_cols=32  Identities=9%  Similarity=-0.248  Sum_probs=26.4

Q ss_pred             ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++++-.  +|+++.+.|++|+||||+++.|+-+.
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            445444  89999999999999999999998654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.50  E-value=0.0048  Score=53.87  Aligned_cols=25  Identities=4%  Similarity=-0.406  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++.-+++.||||+|||||++.|+-.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457889999999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.48  E-value=0.0064  Score=53.51  Aligned_cols=28  Identities=7%  Similarity=-0.167  Sum_probs=23.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..||.-+|+.||||+|||++.+.++=.+
T Consensus        67 ~~~~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           67 KIAGRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567889999999999999999987543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.47  E-value=0.0067  Score=52.08  Aligned_cols=27  Identities=11%  Similarity=-0.233  Sum_probs=22.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +|+.-+|+.||||+|||++.+.++=.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            455568899999999999999887543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.43  E-value=0.0058  Score=53.42  Aligned_cols=26  Identities=19%  Similarity=-0.037  Sum_probs=22.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++..++|.||||+||||+++.++=-
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999988743

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.41  E-value=0.0069  Score=48.38  Aligned_cols=19  Identities=0%  Similarity=-0.321  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+||+|||||++.|.
T Consensus        31 i~v~G~~~vGKSsli~~l~   49 (196)
T 2atv_A           31 LAIFGRAGVGKSALVVRFL   49 (196)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.40  E-value=0.0057  Score=54.72  Aligned_cols=32  Identities=9%  Similarity=-0.114  Sum_probs=23.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ...|++++-.+.   .+.|+|++||||||||++|.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~   55 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIV   55 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHH
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHh
Confidence            347788877664   77888999999999999985

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.33  E-value=0.0075  Score=48.41  Aligned_cols=20  Identities=5%  Similarity=-0.187  Sum_probs=17.7

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++|+|+||+|||||++.|.
T Consensus        30 ki~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            45789999999999999885

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.32  E-value=0.0065  Score=55.95  Aligned_cols=23  Identities=13%  Similarity=-0.116  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.++++|.|+|||||||+.+.|+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.31  E-value=0.0061  Score=53.63  Aligned_cols=26  Identities=15%  Similarity=-0.185  Sum_probs=22.3

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|..-+|+.||||+|||++.++++=
T Consensus        48 ~~~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           48 RKPTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            45667789999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.24  E-value=0.0084  Score=47.56  Aligned_cols=21  Identities=10%  Similarity=-0.373  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++|.|+||+||||+++.++=-
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.19  E-value=0.0082  Score=47.99  Aligned_cols=19  Identities=0%  Similarity=-0.200  Sum_probs=17.1

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        29 i~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5789999999999999874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.15  E-value=0.0066  Score=58.83  Aligned_cols=21  Identities=10%  Similarity=-0.257  Sum_probs=18.8

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.|+|++||||||||++|.-+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSC
T ss_pred             EEEECCCCChHHHHHHHHhCC
Confidence            789999999999999998743

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.09  E-value=0.0092  Score=49.93  Aligned_cols=27  Identities=15%  Similarity=-0.100  Sum_probs=22.0

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ..|+.+++.|++||||||++..+.+-.
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~  100 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFILDD  100 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHHhcc
Confidence            457899999999999999888665443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.09  E-value=0.01  Score=48.23  Aligned_cols=22  Identities=0%  Similarity=-0.434  Sum_probs=18.8

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..++|+|+||+|||||++.|.-
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3678899999999999998763

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.09  E-value=0.007  Score=56.11  Aligned_cols=28  Identities=11%  Similarity=-0.238  Sum_probs=23.8

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |..+|..-+|+.||||+|||+|.++|+-
T Consensus       162 ~~~~~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          162 GKRTPWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             GGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            4456777889999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.06  E-value=0.009  Score=47.97  Aligned_cols=18  Identities=17%  Similarity=-0.025  Sum_probs=16.7

Q ss_pred             EEEecCCCCCchhHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L  217 (231)
                      ++|+|+||+|||||++.+
T Consensus        32 i~v~G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           32 ILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            689999999999999987

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.04  E-value=0.011  Score=50.25  Aligned_cols=26  Identities=8%  Similarity=-0.162  Sum_probs=21.7

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++..-+|+.||||+|||++.+.|+-.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45567889999999999999988753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.04  E-value=0.008  Score=53.97  Aligned_cols=26  Identities=15%  Similarity=-0.185  Sum_probs=22.1

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+|..-+|+.||||+|||+|.++|+-
T Consensus        81 ~~~~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           81 RKPTSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCcHHHHHHHHHH
Confidence            45666788999999999999998874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.03  E-value=0.0049  Score=52.09  Aligned_cols=20  Identities=5%  Similarity=-0.398  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+.||||+|||+|.++|+-
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67889999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.03  E-value=0.0098  Score=48.63  Aligned_cols=19  Identities=5%  Similarity=-0.136  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        31 i~vvG~~~vGKSsLi~~l~   49 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFA   49 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5789999999999999875

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.02  E-value=0.011  Score=51.99  Aligned_cols=25  Identities=24%  Similarity=-0.130  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++..++|.||||+||||+++.++=-
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.01  E-value=0.0095  Score=54.93  Aligned_cols=20  Identities=5%  Similarity=-0.062  Sum_probs=17.9

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -+.|+|+||+|||||++.|.
T Consensus       182 kvaivG~~gvGKSTLln~l~  201 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAIL  201 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            56789999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.98  E-value=0.011  Score=45.86  Aligned_cols=22  Identities=5%  Similarity=-0.283  Sum_probs=18.9

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.=+|+.|+||+|||++.++|.
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~   45 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLH   45 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHH
Confidence            3447899999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.97  E-value=0.011  Score=53.80  Aligned_cols=22  Identities=5%  Similarity=-0.248  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      --+||||.+|||||||+|-+-|
T Consensus        34 ~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           34 VKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4578999999999999999853

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.97  E-value=0.011  Score=48.36  Aligned_cols=19  Identities=5%  Similarity=-0.263  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        37 i~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            5788999999999999875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.94  E-value=0.011  Score=48.34  Aligned_cols=19  Identities=0%  Similarity=-0.332  Sum_probs=17.1

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        29 i~lvG~~~vGKSsLi~~l~   47 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFT   47 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHH
Confidence            5789999999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.94  E-value=0.0098  Score=50.79  Aligned_cols=20  Identities=5%  Similarity=-0.252  Sum_probs=17.8

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++|+|+||+|||||++.|.
T Consensus        28 ~i~vvG~~~~GKSSLln~l~   47 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999999985

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.94  E-value=0.014  Score=51.68  Aligned_cols=31  Identities=10%  Similarity=-0.261  Sum_probs=24.7

Q ss_pred             ceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          190 VSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++-.++ |+++++.|+||+||||++..|+...
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            333345 8999999999999999999987543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.93  E-value=0.0093  Score=49.20  Aligned_cols=20  Identities=0%  Similarity=-0.067  Sum_probs=17.4

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -.+|+|+||+|||||++.|.
T Consensus        31 kI~vvG~~~vGKSsLin~l~   50 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            35789999999999999874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.91  E-value=0.011  Score=50.24  Aligned_cols=22  Identities=14%  Similarity=-0.168  Sum_probs=18.9

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-+|+.||||+|||++.+.|+-
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3567889999999999998864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.87  E-value=0.0089  Score=53.57  Aligned_cols=25  Identities=8%  Similarity=-0.303  Sum_probs=21.7

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|..-+||.||||+|||++.++|+-
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            5666789999999999999999863

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=94.85  E-value=0.012  Score=56.38  Aligned_cols=31  Identities=16%  Similarity=-0.065  Sum_probs=26.4

Q ss_pred             EEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          193 ILKPGSVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      -+..+.-+||.|.+||||||+|++|.+-++.
T Consensus       163 dL~~~pHlLIaG~TGSGKSt~L~~li~sLl~  193 (512)
T 2ius_A          163 DLAKMPHLLVAGTTGSGASVGVNAMILSMLY  193 (512)
T ss_dssp             EGGGSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EcccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3456788999999999999999999876664

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=94.84  E-value=0.012  Score=53.63  Aligned_cols=20  Identities=15%  Similarity=-0.149  Sum_probs=18.2

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.|+|+||+||||||+.|.
T Consensus       181 ~V~lvG~~naGKSTLln~L~  200 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLT  200 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999986

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.83  E-value=0.012  Score=47.51  Aligned_cols=19  Identities=11%  Similarity=-0.265  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        32 i~vvG~~~vGKSsli~~l~   50 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFK   50 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            5789999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.77  E-value=0.013  Score=50.99  Aligned_cols=22  Identities=9%  Similarity=-0.278  Sum_probs=19.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +|+.||||+||||+.+.|+=..
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.72  E-value=0.013  Score=47.41  Aligned_cols=20  Identities=0%  Similarity=-0.328  Sum_probs=17.2

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -.+|+|+||+|||||++.+.
T Consensus        32 ki~vvG~~~~GKSsLi~~l~   51 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYT   51 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            45789999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.63  E-value=0.013  Score=52.44  Aligned_cols=23  Identities=4%  Similarity=-0.115  Sum_probs=19.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..-.++|+|+||+|||||++.|.
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~  188 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALT  188 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34467899999999999999874

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.58  E-value=0.014  Score=49.83  Aligned_cols=20  Identities=5%  Similarity=-0.169  Sum_probs=17.8

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++|+|++|+|||||++.|+
T Consensus        41 ~I~vvG~~g~GKSSLin~l~   60 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSII   60 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            35788999999999999986

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.55  E-value=0.034  Score=47.41  Aligned_cols=33  Identities=9%  Similarity=-0.187  Sum_probs=25.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..++. +.+...|...++.||||||||||...|+
T Consensus        23 ~~lHa-~~v~~~g~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           23 RSMHG-VLVDIYGLGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             CCEES-EEEEETTEEEEEECCCTTTTHHHHHHHH
T ss_pred             eeeeE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Confidence            34554 4556688999999999999999977664

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.52  E-value=0.014  Score=54.68  Aligned_cols=32  Identities=9%  Similarity=-0.046  Sum_probs=29.2

Q ss_pred             cceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          189 RVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |+.--|.+|+..++.|+||+|||||++.|+=.
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            88899999999999999999999999987643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.49  E-value=0.022  Score=53.35  Aligned_cols=25  Identities=4%  Similarity=-0.261  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ++.++++.|+|||||||++..|+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~  120 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYF  120 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999998854

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.48  E-value=0.018  Score=53.96  Aligned_cols=26  Identities=8%  Similarity=-0.169  Sum_probs=22.6

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|.+=.|+-||||+|||++-|+|+=
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46777788999999999999999874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.46  E-value=0.0072  Score=49.06  Aligned_cols=20  Identities=10%  Similarity=-0.184  Sum_probs=17.5

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++|+|++|+|||||++.|.
T Consensus        31 ~i~v~G~~~~GKSslin~l~   50 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLC   50 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHh
Confidence            46789999999999999874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.34  E-value=0.018  Score=51.26  Aligned_cols=25  Identities=16%  Similarity=-0.320  Sum_probs=21.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|+.-+|+.||||+|||++.|+|+=
T Consensus        49 ~~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           49 LGKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4556678899999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.31  E-value=0.019  Score=46.87  Aligned_cols=20  Identities=5%  Similarity=-0.378  Sum_probs=17.6

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++|+|.||+|||||++.|.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~   59 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLI   59 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            56788999999999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.30  E-value=0.02  Score=46.90  Aligned_cols=19  Identities=16%  Similarity=-0.130  Sum_probs=16.9

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|+||+|||||++.|.
T Consensus        30 i~vvG~~~vGKSsL~~~l~   48 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLA   48 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            5789999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.30  E-value=0.022  Score=49.49  Aligned_cols=21  Identities=19%  Similarity=-0.206  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+..|.|+|||||||+.+.|.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999997

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.29  E-value=0.017  Score=49.68  Aligned_cols=24  Identities=17%  Similarity=-0.126  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +..-+|+.|+||+||||+.+.++-
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            445688999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.23  E-value=0.019  Score=53.25  Aligned_cols=25  Identities=12%  Similarity=-0.217  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCCCchhHHHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.-+++.||||+|||||+++|+-.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999987543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.22  E-value=0.023  Score=50.16  Aligned_cols=27  Identities=0%  Similarity=-0.347  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ++.-+++.||||+|||+|+++|+--+.
T Consensus       151 ~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          151 EQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            367788999999999999999876543

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=94.10  E-value=0.01  Score=55.98  Aligned_cols=25  Identities=12%  Similarity=-0.028  Sum_probs=20.8

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ....++++|.|+|||||||+++.++
T Consensus       158 ~~~~~v~~I~G~aGsGKTt~I~~~~  182 (446)
T 3vkw_A          158 VSSAKVVLVDGVPGCGKTKEILSRV  182 (446)
T ss_dssp             CCCSEEEEEEECTTSCHHHHHHHHC
T ss_pred             cccccEEEEEcCCCCCHHHHHHHHh
Confidence            3455689999999999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.10  E-value=0.0093  Score=47.92  Aligned_cols=20  Identities=0%  Similarity=-0.328  Sum_probs=17.1

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -.+|+|+||+|||||++.+.
T Consensus        32 ki~v~G~~~~GKSsli~~l~   51 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYT   51 (204)
Confidence            36789999999999997764

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.04  E-value=0.019  Score=49.93  Aligned_cols=20  Identities=10%  Similarity=-0.282  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+.||||+|||++.+.|+-
T Consensus        48 vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            78899999999999999875

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.04  E-value=0.025  Score=48.53  Aligned_cols=22  Identities=5%  Similarity=0.040  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      |..++|-|++|+|||||++.++
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~   52 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFL   52 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHH
Confidence            5799999999999999999875

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.02  E-value=0.023  Score=50.73  Aligned_cols=26  Identities=19%  Similarity=-0.307  Sum_probs=21.3

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++..-+|+.||||+||||+.+.|+-
T Consensus        69 ~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           69 ELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            34555678899999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.99  E-value=0.025  Score=53.06  Aligned_cols=26  Identities=12%  Similarity=-0.151  Sum_probs=22.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|-+=+|+-||||+|||+|-|+|+=
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            56777788899999999999999874

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.98  E-value=0.0092  Score=47.86  Aligned_cols=19  Identities=5%  Similarity=-0.325  Sum_probs=16.5

Q ss_pred             EEEEecCCCCCchhHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L  217 (231)
                      -.+|+|+||+|||||++.|
T Consensus        35 ki~vvG~~~~GKSsli~~l   53 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRF   53 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3678999999999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.95  E-value=0.024  Score=48.28  Aligned_cols=19  Identities=11%  Similarity=-0.164  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|.+|+|||||++.|+
T Consensus        39 I~lvG~~g~GKSSLin~l~   57 (262)
T 3def_A           39 VLVLGKGGVGKSSTVNSLI   57 (262)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5788999999999999885

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.026  Score=52.87  Aligned_cols=26  Identities=4%  Similarity=-0.262  Sum_probs=21.8

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|.+=.|+-||||+|||+|-|+|+=
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            45666678899999999999999874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.88  E-value=0.024  Score=49.34  Aligned_cols=20  Identities=10%  Similarity=-0.122  Sum_probs=18.0

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -+||.|+||+|||++.+.|+
T Consensus        57 ~vll~G~~GtGKT~la~~ia   76 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIIS   76 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHH
Confidence            47899999999999999984

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.77  E-value=0.029  Score=46.68  Aligned_cols=18  Identities=0%  Similarity=-0.226  Sum_probs=16.4

Q ss_pred             EEEecCCCCCchhHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L  217 (231)
                      ++|+|+||+|||||++.+
T Consensus        40 VvlvG~~~vGKSSLl~r~   57 (211)
T 2g3y_A           40 VVLIGEQGVGKSTLANIF   57 (211)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678999999999999875

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=93.72  E-value=0.017  Score=53.90  Aligned_cols=27  Identities=7%  Similarity=-0.061  Sum_probs=21.0

Q ss_pred             EEeCCeE--EEEecCCCCCchhHHHHHHH
Q 037424          193 ILKPGSV--NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       193 iiKPGeM--TLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++.|++  +|+.||||+||||+.+.|+=
T Consensus        44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           44 AIEAGHLHSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             HHHHTCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHcCCCcEEEEECCCCCcHHHHHHHHHH
Confidence            3344444  78889999999999998864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.72  E-value=0.026  Score=61.01  Aligned_cols=36  Identities=11%  Similarity=-0.103  Sum_probs=29.4

Q ss_pred             ccccee--EEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          187 LNRVSG--ILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       187 L~dVSG--iiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      |+.+.|  =+.||++++|.||||+|||||+..++.-+.
T Consensus       720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa  757 (1706)
T 3cmw_A          720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ  757 (1706)
T ss_dssp             HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence            455553  489999999999999999999988876543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.71  E-value=0.03  Score=47.20  Aligned_cols=22  Identities=9%  Similarity=-0.328  Sum_probs=19.3

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-+|+.|+||+|||++.+.|.-
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHHHHHH
Confidence            4578999999999999999864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=93.66  E-value=0.019  Score=50.11  Aligned_cols=22  Identities=14%  Similarity=-0.111  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .=+|+.||||+|||++.+.|+-
T Consensus        47 ~~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4578899999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=93.65  E-value=0.033  Score=50.77  Aligned_cols=25  Identities=8%  Similarity=0.013  Sum_probs=20.3

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      |=+.|| +|+|-|+||+|||||+-.+
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~   48 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTM   48 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence            345678 8999999999999995444

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=93.61  E-value=0.044  Score=51.16  Aligned_cols=25  Identities=12%  Similarity=-0.154  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ||+++++.|++||||||++..|+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8899999999999999999988754

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=93.58  E-value=0.025  Score=50.97  Aligned_cols=24  Identities=8%  Similarity=-0.255  Sum_probs=21.4

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .|+.-+|+.||||+|||+|.++|+
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia  169 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVA  169 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHH
Confidence            567788999999999999999985

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.58  E-value=0.028  Score=52.35  Aligned_cols=26  Identities=0%  Similarity=-0.321  Sum_probs=21.8

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|.+=+|+-||||+|||++-|+|+=
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence            45656678889999999999999874

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=93.57  E-value=0.036  Score=48.47  Aligned_cols=22  Identities=9%  Similarity=-0.141  Sum_probs=19.4

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..|+-||||+||||+++.++=-
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~   61 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKG   61 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=93.56  E-value=0.03  Score=48.45  Aligned_cols=20  Identities=10%  Similarity=-0.142  Sum_probs=17.9

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++|+|.||+|||||++.|+
T Consensus       101 ~v~~vG~~~vGKSslin~l~  120 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLK  120 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             heEEeCCCCCCHHHHHHHHh
Confidence            46788999999999999986

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=93.54  E-value=0.035  Score=51.31  Aligned_cols=21  Identities=0%  Similarity=-0.227  Sum_probs=18.8

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++|.|+||+||||+++.+.-
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~   67 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIE   67 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            889999999999999987654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.44  E-value=0.038  Score=51.14  Aligned_cols=25  Identities=8%  Similarity=-0.172  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |++=.|+.||||+|||++-++|+-.
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHH
Confidence            5556788999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.39  E-value=0.044  Score=49.08  Aligned_cols=23  Identities=4%  Similarity=-0.208  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCCchhHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+.|.|+||+|||||+..|+..
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999998643

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.38  E-value=0.018  Score=44.66  Aligned_cols=23  Identities=9%  Similarity=-0.269  Sum_probs=18.8

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.=+|+.|+||+|||++.+.|.
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGC
T ss_pred             CCCcEEEECCCCccHHHHHHHHH
Confidence            34447899999999999998764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=93.36  E-value=0.039  Score=48.81  Aligned_cols=24  Identities=0%  Similarity=-0.277  Sum_probs=20.5

Q ss_pred             CCeEEEE--ecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLA--DCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLV--LGrPGSGcSTlLK~L~~  219 (231)
                      .+..++|  -|+||+|||||++.++=
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~   74 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVK   74 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHH
Confidence            4567888  89999999999998763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.31  E-value=0.042  Score=47.17  Aligned_cols=24  Identities=13%  Similarity=-0.020  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|.+..+.|+|||||||+.+.|.=
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999999998864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=93.28  E-value=0.036  Score=48.48  Aligned_cols=20  Identities=10%  Similarity=-0.067  Sum_probs=17.8

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -++|+|.||+|||||+++|.
T Consensus       122 ~v~~vG~~nvGKSsliN~l~  141 (282)
T 1puj_A          122 RALIIGIPNVGKSTLINRLA  141 (282)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCchHHHHHHHh
Confidence            46788999999999999985

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.26  E-value=0.04  Score=51.85  Aligned_cols=24  Identities=0%  Similarity=-0.272  Sum_probs=20.7

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +...+|+-||||+||||+.++|+=
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999998864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.15  E-value=0.042  Score=47.18  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+++|.|++|+|||||++.++=
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~   52 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGIN   52 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4999999999999999998753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.09  E-value=0.05  Score=50.56  Aligned_cols=24  Identities=8%  Similarity=-0.160  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCCCchhHHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ..+++++|.|||||||+.+.|+--
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999998743

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=93.00  E-value=0.045  Score=46.72  Aligned_cols=21  Identities=10%  Similarity=-0.306  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|+-||||+||||+.+.++=-
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHH
Confidence            789999999999999988754

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=92.95  E-value=0.053  Score=49.33  Aligned_cols=23  Identities=13%  Similarity=-0.132  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCCchhHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .=++|+|+||||||++++.+..-
T Consensus        54 ~h~~i~G~tGsGKs~~~~~li~~   76 (437)
T 1e9r_A           54 RHLLVNGATGTGKSVLLRELAYT   76 (437)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999998766543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.93  E-value=0.055  Score=49.26  Aligned_cols=23  Identities=9%  Similarity=-0.295  Sum_probs=20.0

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.+..|+||+|||||||-+.|+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA   61 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLA   61 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34578999999999999998886

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=92.89  E-value=0.035  Score=47.55  Aligned_cols=22  Identities=0%  Similarity=-0.402  Sum_probs=18.6

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+-||||+|||||-.+|+=
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999888754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.044  Score=52.01  Aligned_cols=26  Identities=8%  Similarity=-0.239  Sum_probs=22.1

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|-+=+|+-||||+|||+|-|+|+=
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence            45666778999999999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=92.74  E-value=0.046  Score=52.38  Aligned_cols=20  Identities=15%  Similarity=-0.006  Sum_probs=18.5

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++|+|+||+|||||++.|.
T Consensus        67 ~V~vvG~~n~GKSTLIN~Ll   86 (550)
T 2qpt_A           67 MVLVAGQYSTGKTSFIQYLL   86 (550)
T ss_dssp             EEEEEEBTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            78899999999999999984

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=92.73  E-value=0.042  Score=60.26  Aligned_cols=37  Identities=11%  Similarity=-0.129  Sum_probs=31.8

Q ss_pred             ccccccee--EEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          185 NILNRVSG--ILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       185 ~IL~dVSG--iiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .=|+.+.|  =+.||++++|-|+||+|||||+..++.-+
T Consensus       718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~  756 (2050)
T 3cmu_A          718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (2050)
T ss_dssp             HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34788885  69999999999999999999998887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=92.57  E-value=0.032  Score=49.80  Aligned_cols=20  Identities=5%  Similarity=-0.252  Sum_probs=17.4

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -.+|+|+||+|||||++.|.
T Consensus        33 ~I~vvG~~~~GKSSLln~L~   52 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFV   52 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTT
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            46788999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=92.56  E-value=0.049  Score=58.92  Aligned_cols=39  Identities=10%  Similarity=-0.130  Sum_probs=30.9

Q ss_pred             ccccccc-e-eEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424          184 INILNRV-S-GILKPGSVNLADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       184 ~~IL~dV-S-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      ...|+++ . |=+.+|++++|.|+||+|||+|.-.+..-++
T Consensus        19 i~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~   59 (1706)
T 3cmw_A           19 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   59 (1706)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3346665 3 5699999999999999999999888766543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=92.55  E-value=0.049  Score=59.78  Aligned_cols=38  Identities=11%  Similarity=-0.141  Sum_probs=32.7

Q ss_pred             ccccccce--eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          184 INILNRVS--GILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       184 ~~IL~dVS--GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ...|+++.  |-+.+|+.+||.|+||+|||||...+..-+
T Consensus      1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A         1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            55688998  579999999999999999999988776544

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=92.45  E-value=0.059  Score=50.91  Aligned_cols=25  Identities=12%  Similarity=-0.149  Sum_probs=21.6

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|..-+|+.||||+|||++.++|+
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia  259 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVA  259 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHH
Confidence            4566678999999999999999985

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=92.44  E-value=0.07  Score=51.32  Aligned_cols=23  Identities=0%  Similarity=-0.336  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCCCchhHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +..++|.|+||+||||+++.|.-
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~  226 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVAD  226 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46889999999999999988753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=92.44  E-value=0.053  Score=50.91  Aligned_cols=19  Identities=0%  Similarity=-0.260  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      +.|+|+||+|||||++.|.
T Consensus       227 V~ivG~~nvGKSSLln~L~  245 (462)
T 3geh_A          227 VAIVGRPNVGKSSLLNAWS  245 (462)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            7899999999999999875

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=92.43  E-value=0.055  Score=49.01  Aligned_cols=24  Identities=8%  Similarity=-0.126  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCCCchhHHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.-.+++|+||+|||||+++|+=.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhh
Confidence            345678899999999999998753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=92.38  E-value=0.057  Score=46.27  Aligned_cols=25  Identities=4%  Similarity=-0.324  Sum_probs=19.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+..--++|+|.||+|||||++.+.
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~  176 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYT  176 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccceeEEEEECCCCCChHHHHHHHH
Confidence            3344457899999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=92.35  E-value=0.06  Score=45.76  Aligned_cols=21  Identities=10%  Similarity=-0.373  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|+-||||+||||+.+.++=-
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHH
Confidence            789999999999999988654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=92.28  E-value=0.059  Score=50.65  Aligned_cols=25  Identities=20%  Similarity=0.033  Sum_probs=20.0

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|+- .|+.||||+||||+.++|+=.
T Consensus        49 ~~~~-iLl~GppGtGKT~lar~lA~~   73 (444)
T 1g41_A           49 TPKN-ILMIGPTGVGKTEIARRLAKL   73 (444)
T ss_dssp             CCCC-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCce-EEEEcCCCCCHHHHHHHHHHH
Confidence            3443 567899999999999998754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=92.22  E-value=0.053  Score=49.17  Aligned_cols=24  Identities=8%  Similarity=-0.104  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++.-.+++|+||+|||||+++|+=
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~  182 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIK  182 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHh
Confidence            345678889999999999999874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.17  E-value=0.066  Score=53.88  Aligned_cols=25  Identities=12%  Similarity=-0.149  Sum_probs=22.1

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|-+=+|+-||||+|||+|.|+|+
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA  259 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVA  259 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHH
Confidence            5677778899999999999999986

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.14  E-value=0.068  Score=50.30  Aligned_cols=26  Identities=8%  Similarity=-0.175  Sum_probs=22.2

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|.+=.|+-||||.|||+|-|+|+-
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHH
Confidence            46667788889999999999999874

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=91.97  E-value=0.08  Score=53.52  Aligned_cols=33  Identities=9%  Similarity=0.004  Sum_probs=29.2

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHH-HHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVF-QVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlL-K~L~  218 (231)
                      =|+||+-.|.-+.+|.|-|.+|||||||. .+||
T Consensus        25 NLkni~v~iP~~~l~viTGvSGSGKSSLafdtl~   58 (842)
T 2vf7_A           25 NLKDISVKVPRDALVVFTGVSGSGKSSLAFGTLY   58 (842)
T ss_dssp             TCCSEEEEEESSSEEEEESSTTSSHHHHHTTTHH
T ss_pred             CCCCeeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence            48999999999999999999999999985 3443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.97  E-value=0.076  Score=45.16  Aligned_cols=21  Identities=5%  Similarity=-0.111  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|+.||||+||||+.+.++=-
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~   65 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHE   65 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHH
Confidence            789999999999999988754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.93  E-value=0.078  Score=49.38  Aligned_cols=22  Identities=5%  Similarity=-0.304  Sum_probs=19.0

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      =.|+.||||+|||++.+.|+-.
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH
Confidence            3478899999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.83  E-value=0.089  Score=48.98  Aligned_cols=25  Identities=12%  Similarity=-0.144  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCCchhHHHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ...+++.|+||+||||+...|+..+
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999887643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=91.73  E-value=0.056  Score=48.75  Aligned_cols=18  Identities=6%  Similarity=-0.118  Sum_probs=16.3

Q ss_pred             EEEecCCCCCchhHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L  217 (231)
                      ++|+|.|++|||||++.|
T Consensus       161 V~lvG~~nvGKSTLln~L  178 (342)
T 1lnz_A          161 VGLVGFPSVGKSTLLSVV  178 (342)
T ss_dssp             EEEESSTTSSHHHHHHHS
T ss_pred             eeeeCCCCCCHHHHHHHH
Confidence            568999999999999986

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=91.67  E-value=0.082  Score=45.75  Aligned_cols=21  Identities=14%  Similarity=-0.080  Sum_probs=18.1

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+.|+-||||+||||+.++|+
T Consensus        49 ~~~L~~G~~G~GKT~la~~la   69 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALC   69 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHH
T ss_pred             eEEEeeCcCCCCHHHHHHHHH
Confidence            467788889999999999985

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=91.66  E-value=0.095  Score=50.89  Aligned_cols=26  Identities=15%  Similarity=-0.009  Sum_probs=22.5

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLLVLW  223 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~~~~  223 (231)
                      -=+||.|.+|||||++|++|.+-++.
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sLl~  240 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSILF  240 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999887664

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=91.66  E-value=0.059  Score=47.80  Aligned_cols=19  Identities=16%  Similarity=-0.059  Sum_probs=16.8

Q ss_pred             EEEEecCCCCCchhHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L  217 (231)
                      -++|+|+||+|||||++.|
T Consensus       167 kI~ivG~~~vGKSsLl~~l  185 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKL  185 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHT
T ss_pred             eEEEECCCCccHHHHHHHH
Confidence            3688999999999999876

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.62  E-value=0.058  Score=51.26  Aligned_cols=23  Identities=9%  Similarity=-0.152  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCCCchhHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |.=+|+.||||.|||+|.++|+-
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGG
T ss_pred             CCeeEeecCchHHHHHHHHHHHH
Confidence            34578899999999999999864

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=91.50  E-value=0.062  Score=52.28  Aligned_cols=30  Identities=20%  Similarity=0.048  Sum_probs=22.6

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|.++.+   |--.+.|+|+|++|||||++.|+
T Consensus        30 ~L~~i~~---~~~~VaivG~pnvGKStLiN~L~   59 (592)
T 1f5n_A           30 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLA   59 (592)
T ss_dssp             HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHT
T ss_pred             HHHhccC---CCcEEEEECCCCCCHHHHHHhHc
Confidence            4555432   33467899999999999999985

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.50  E-value=0.12  Score=48.45  Aligned_cols=24  Identities=8%  Similarity=-0.168  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++..+++.|+||+||||+...|+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            567999999999999999988874

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=91.48  E-value=0.094  Score=47.51  Aligned_cols=21  Identities=5%  Similarity=-0.232  Sum_probs=18.1

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -+||||..+|||||++|-+=|
T Consensus        34 klLlLG~geSGKST~~KQmki   54 (353)
T 1cip_A           34 KLLLLGAGESGKSTIVKQMKI   54 (353)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEcCCCCCchhHHHHHHH
Confidence            468999999999999987654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=91.45  E-value=0.1  Score=49.56  Aligned_cols=25  Identities=12%  Similarity=-0.126  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...++++.|.|||||||+-+.|+=-
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~   58 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRY   58 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999998643

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=91.36  E-value=0.097  Score=51.46  Aligned_cols=24  Identities=8%  Similarity=-0.266  Sum_probs=20.3

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++=.++|+|+||+|||||+++|.
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLl   90 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALI   90 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            344467899999999999999986

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=91.33  E-value=0.12  Score=49.93  Aligned_cols=19  Identities=0%  Similarity=-0.228  Sum_probs=16.0

Q ss_pred             eEEEEecCCCCCchhHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQV  216 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~  216 (231)
                      ..+||.||||+|||+.+-.
T Consensus       206 ~~~lI~GPPGTGKT~ti~~  224 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVE  224 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHH
Confidence            4889999999999987543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=91.22  E-value=0.066  Score=50.43  Aligned_cols=19  Identities=5%  Similarity=-0.010  Sum_probs=17.4

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      +.|+|+||+|||||++.|.
T Consensus       236 V~ivG~~nvGKSSLln~L~  254 (476)
T 3gee_A          236 TVIAGKPNAGKSTLLNTLL  254 (476)
T ss_dssp             EEEECCTTSSHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=91.11  E-value=0.071  Score=47.88  Aligned_cols=23  Identities=0%  Similarity=-0.088  Sum_probs=19.1

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.-++|-||||.|||++.|.++
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~   66 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVM   66 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            34456888999999999999876

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=91.00  E-value=0.096  Score=49.32  Aligned_cols=19  Identities=5%  Similarity=-0.169  Sum_probs=16.9

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      ++|+|.||+|||||++.|.
T Consensus        44 V~lvG~~~vGKSSLl~~l~   62 (535)
T 3dpu_A           44 VHLIGDGMAGKTSLLKQLI   62 (535)
T ss_dssp             EEEESSSCSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4688999999999999875

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=90.89  E-value=0.14  Score=49.43  Aligned_cols=21  Identities=5%  Similarity=-0.153  Sum_probs=18.1

Q ss_pred             eEEEEecCCCCCchhHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..++|.||||+||||++..+.
T Consensus       196 ~~~li~GppGTGKT~~~~~~i  216 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIV  216 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHH
Confidence            478999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=90.85  E-value=0.1  Score=47.89  Aligned_cols=20  Identities=0%  Similarity=-0.207  Sum_probs=17.5

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -..|+|+||+|||||++.|.
T Consensus       177 ki~lvG~~nvGKSSLin~l~  196 (436)
T 2hjg_A          177 QFCLIGRPNVGKSSLVNAML  196 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHh
Confidence            46788999999999999874

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=90.71  E-value=0.12  Score=49.26  Aligned_cols=24  Identities=13%  Similarity=-0.160  Sum_probs=19.4

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +...+++.|+||+||||+...|+.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445778889999999999999874

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=90.34  E-value=0.15  Score=50.05  Aligned_cols=23  Identities=17%  Similarity=-0.093  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCCchhHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |.+..|.|.|||||||+.+.|.=
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            56788999999999999999864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=90.34  E-value=0.05  Score=51.37  Aligned_cols=20  Identities=5%  Similarity=-0.114  Sum_probs=17.9

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -+.|+|+|++||||||+.|.
T Consensus       245 kV~ivG~pnvGKSSLln~L~  264 (482)
T 1xzp_A          245 RMVIVGKPNVGKSTLLNRLL  264 (482)
T ss_dssp             EEEEECCHHHHTCHHHHHHH
T ss_pred             EEEEECcCCCcHHHHHHHHH
Confidence            47799999999999999875

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=90.24  E-value=0.082  Score=48.55  Aligned_cols=19  Identities=5%  Similarity=-0.220  Sum_probs=16.8

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      +.++|+|.+||||||++|.
T Consensus        75 V~ivG~PNvGKSTL~n~Lt   93 (376)
T 4a9a_A           75 VGFVGFPSVGKSTLLSKLT   93 (376)
T ss_dssp             EEEECCCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4577999999999999985

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=90.18  E-value=0.14  Score=52.51  Aligned_cols=28  Identities=11%  Similarity=0.032  Sum_probs=26.8

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDV  213 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTl  213 (231)
                      =|+||+=.|.-+++|.+-|.+|||||||
T Consensus        33 NLkni~v~iP~~~lvv~tG~SGSGKSSL   60 (972)
T 2r6f_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSL   60 (972)
T ss_dssp             SCCSEEEEEETTSEEEEEESTTSSHHHH
T ss_pred             cCCceeeeccCCcEEEEECCCCCCHHHH
Confidence            3899999999999999999999999998

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=89.84  E-value=0.23  Score=44.63  Aligned_cols=33  Identities=15%  Similarity=-0.087  Sum_probs=26.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      ...+|++. +.-.|+-+|+.|++|+||||+...|
T Consensus       132 ~~~~H~~~-v~~~g~~vl~~G~sG~GKSt~a~~l  164 (314)
T 1ko7_A          132 TTSLHGVL-VDVYGVGVLITGDSGIGKSETALEL  164 (314)
T ss_dssp             EEEEESEE-EEETTEEEEEEESTTSSHHHHHHHH
T ss_pred             ceeeeEEE-EEECCEEEEEEeCCCCCHHHHHHHH
Confidence            44677754 4458999999999999999987665

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=89.83  E-value=0.15  Score=44.90  Aligned_cols=21  Identities=0%  Similarity=-0.255  Sum_probs=18.3

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -+++-||||+|||+|.++|+-
T Consensus       106 ~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A          106 TIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            467889999999999998874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=89.55  E-value=0.17  Score=49.46  Aligned_cols=26  Identities=8%  Similarity=-0.170  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ++.-.||.|+||+||||+.+.|+-.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            44556899999999999999988643

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=89.50  E-value=0.18  Score=48.65  Aligned_cols=26  Identities=8%  Similarity=-0.079  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|.+..+-|.|||||||+.|.|.=-.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            45578889999999999999987543

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=89.49  E-value=0.2  Score=48.22  Aligned_cols=24  Identities=4%  Similarity=-0.118  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .++.++|-|+||+||||+++.+.-
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~  186 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLA  186 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHH
Confidence            367899999999999999987643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=89.37  E-value=0.13  Score=51.43  Aligned_cols=23  Identities=4%  Similarity=-0.220  Sum_probs=19.6

Q ss_pred             EEEEecCCCCCchhHHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -.+|.||||+||||+++.|+--.
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHH
Confidence            46888999999999999988643

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=88.98  E-value=0.13  Score=51.16  Aligned_cols=26  Identities=8%  Similarity=-0.129  Sum_probs=21.1

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++.|+.++|.||+||||||++..+.+
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHH
Confidence            34578899999999999998777633

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=88.97  E-value=0.23  Score=49.72  Aligned_cols=22  Identities=5%  Similarity=-0.161  Sum_probs=18.5

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +..++|.||||+|||+++..+.
T Consensus       375 ~~~~lI~GppGTGKT~~i~~~i  396 (802)
T 2xzl_A          375 RPLSLIQGPPGTGKTVTSATIV  396 (802)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999887654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=88.93  E-value=0.2  Score=49.18  Aligned_cols=22  Identities=5%  Similarity=-0.304  Sum_probs=19.2

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      =.|+.||||+||||+.+.|+-.
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH
Confidence            3688999999999999998754

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=88.91  E-value=0.18  Score=47.37  Aligned_cols=25  Identities=0%  Similarity=-0.283  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |--.+.|+|+|.+||||||+.|+-.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3446789999999999999999853

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=88.91  E-value=0.23  Score=46.49  Aligned_cols=23  Identities=0%  Similarity=-0.347  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+++++|.|++|.|||||.+.++
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~  168 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAV  168 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHH
Confidence            46799999999999999998764

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=88.90  E-value=0.21  Score=47.73  Aligned_cols=25  Identities=16%  Similarity=0.065  Sum_probs=21.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.|....+.|.|||||||+-+.|.=
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~  394 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILAT  394 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHH
Confidence            3466788899999999999999864

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=88.51  E-value=0.27  Score=49.26  Aligned_cols=22  Identities=5%  Similarity=-0.161  Sum_probs=18.7

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +..++|.||||+||||++..+.
T Consensus       371 ~~~~lI~GppGTGKT~ti~~~i  392 (800)
T 2wjy_A          371 RPLSLIQGPPGTGKTVTSATIV  392 (800)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Confidence            4588999999999999887664

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=88.40  E-value=0.24  Score=48.36  Aligned_cols=25  Identities=20%  Similarity=-0.100  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |.--+|+.||||+|||++.++|+=.
T Consensus       487 p~~~~ll~G~~GtGKT~la~~la~~  511 (758)
T 1r6b_X          487 PVGSFLFAGPTGVGKTEVTVQLSKA  511 (758)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHH
Confidence            3335788999999999999988753

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=88.38  E-value=0.11  Score=50.10  Aligned_cols=24  Identities=8%  Similarity=-0.200  Sum_probs=19.3

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.-=+|+.||||.|||+|+|.|+
T Consensus       325 r~~~~vLL~GppGtGKT~LAr~la  348 (595)
T 3f9v_A          325 RGDIHILIIGDPGTAKSQMLQFIS  348 (595)
T ss_dssp             CCSCCEEEEESSCCTHHHHHHSSS
T ss_pred             CCCcceEEECCCchHHHHHHHHHH
Confidence            333357889999999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=88.13  E-value=0.24  Score=45.89  Aligned_cols=22  Identities=9%  Similarity=-0.164  Sum_probs=18.6

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      -+||||..+|||||++|-+=|+
T Consensus        42 klLLLG~geSGKSTi~KQmkii   63 (402)
T 1azs_C           42 RLLLLGAGESGKSTIVKQMRIL   63 (402)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCchhhHHHHHHHH
Confidence            4789999999999999977543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=87.28  E-value=0.29  Score=48.82  Aligned_cols=24  Identities=13%  Similarity=-0.133  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .-.|+.||||+|||++.|+|+-..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999987543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=87.15  E-value=0.36  Score=45.79  Aligned_cols=35  Identities=11%  Similarity=-0.083  Sum_probs=27.8

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .+++.+.-++|-+ -+++.|+||.|||||++.|+.-
T Consensus       140 r~ID~L~pi~kGq-~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          140 KVVDLLAPYIKGG-KIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             HHHHHHSCEETTC-EEEEECCSSSCHHHHHHHHHHH
T ss_pred             hHHHHHhhhccCC-EEEEECCCCCCccHHHHHHHhh
Confidence            4577777777655 5678899999999999988754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=86.78  E-value=0.35  Score=47.42  Aligned_cols=23  Identities=9%  Similarity=-0.177  Sum_probs=19.9

Q ss_pred             EEEEecCCCCCchhHHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      -.|+.||||+|||++.|+|+=..
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999987544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=86.70  E-value=0.33  Score=41.38  Aligned_cols=26  Identities=8%  Similarity=-0.082  Sum_probs=21.4

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      -++|.+.++-|+.||||||.|--++.
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~   50 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVR   50 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHH
Confidence            36789999999999999998765544

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=86.44  E-value=0.4  Score=41.12  Aligned_cols=29  Identities=10%  Similarity=0.073  Sum_probs=20.2

Q ss_pred             ceeEEeCCeEEEEecCCCCCchh-HHHHHH
Q 037424          190 VSGILKPGSVNLADCLTFLHPLD-VFQVLF  218 (231)
Q Consensus       190 VSGiiKPGeMTLVLGrPGSGcST-lLK~L~  218 (231)
                      +.+.-..|.+.++-|+.|||||| ||+.+.
T Consensus        21 m~~~~~~G~I~vitG~M~sGKTT~Llr~~~   50 (219)
T 3e2i_A           21 MYETYHSGWIECITGSMFSGKSEELIRRLR   50 (219)
T ss_dssp             ------CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             EeeccCCceEEEEECCCCCCHHHHHHHHHH
Confidence            33444678999999999999999 777753

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=85.93  E-value=0.31  Score=54.91  Aligned_cols=20  Identities=0%  Similarity=-0.233  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|+|||||||||+.|+|+=
T Consensus       926 vmlvGptgsGKTt~~~~La~  945 (2695)
T 4akg_A          926 LILVGKAGCGKTATWKTVID  945 (2695)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999874

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=85.24  E-value=0.44  Score=45.45  Aligned_cols=27  Identities=11%  Similarity=-0.059  Sum_probs=22.8

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +.|....+.|.|||||||+=+.|+=-.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L  419 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTF  419 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHH
Confidence            566778899999999999999987543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=84.78  E-value=0.42  Score=44.02  Aligned_cols=22  Identities=0%  Similarity=-0.265  Sum_probs=18.5

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..-..|+|.||+|||||++.|.
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~  216 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAML  216 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceeEEecCCCCCHHHHHHHHh
Confidence            3456789999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=84.67  E-value=0.42  Score=46.25  Aligned_cols=24  Identities=8%  Similarity=-0.157  Sum_probs=19.1

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|.=-..|+|.|++|||||++.|.
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll  188 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLL  188 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCHHHHHHHHH
Confidence            333346788999999999999874

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=84.16  E-value=0.76  Score=41.23  Aligned_cols=31  Identities=6%  Similarity=-0.217  Sum_probs=25.4

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQV  216 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~  216 (231)
                      ..+|. +.+..-|.=+|+.|+||+||||+--.
T Consensus       136 ~~~H~-~~v~~~g~gvli~G~sG~GKStlal~  166 (312)
T 1knx_A          136 AQIHG-VLLEVFGVGVLLTGRSGIGKSECALD  166 (312)
T ss_dssp             EEEEE-EEEEETTEEEEEEESSSSSHHHHHHH
T ss_pred             ceeEE-EEEEECCEEEEEEcCCCCCHHHHHHH
Confidence            45666 67778899999999999999998643

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=83.77  E-value=0.37  Score=48.53  Aligned_cols=26  Identities=8%  Similarity=-0.192  Sum_probs=21.4

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|.+=+|+-||||+|||.+-|+|+-
T Consensus       508 ~~~~~gvLl~GPPGtGKT~lAkaiA~  533 (806)
T 3cf2_A          508 MTPSKGVLFYGPPGCGKTLLAKAIAN  533 (806)
T ss_dssp             CCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHH
Confidence            45555678899999999999999873

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=83.48  E-value=0.39  Score=44.72  Aligned_cols=20  Identities=5%  Similarity=-0.222  Sum_probs=17.3

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      -..|+|.|++|||||++.|.
T Consensus        35 ki~iiG~~~~GKSTLi~~Ll   54 (483)
T 3p26_A           35 SFVVLGHVDAGKSTLMGRLL   54 (483)
T ss_dssp             EEEEESCGGGTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            35688999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=81.68  E-value=0.98  Score=41.92  Aligned_cols=25  Identities=20%  Similarity=-0.021  Sum_probs=20.1

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++.+..++.|++|+||||+.--|+.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3556777889999999999877764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=81.00  E-value=0.64  Score=53.22  Aligned_cols=19  Identities=5%  Similarity=-0.165  Sum_probs=16.9

Q ss_pred             EEecCCCCCchhHHHHHHH
Q 037424          201 LADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       201 LVLGrPGSGcSTlLK~L~~  219 (231)
                      .|+|||||||||..|+|+=
T Consensus       910 mlVGp~gsGKTt~~~~L~~  928 (3245)
T 3vkg_A          910 MMVGPSGGGKTTSWEVYLE  928 (3245)
T ss_dssp             EEECSSSSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3889999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.66
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.57
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.57
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.54
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.48
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.48
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.47
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.46
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.45
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.45
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.44
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.43
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.39
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.38
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.32
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.21
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.08
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.02
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.95
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.94
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.85
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.65
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.65
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.62
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.62
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.32
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.26
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.23
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.12
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.04
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.95
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.9
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.9
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.86
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.76
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.74
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.71
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.69
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.64
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.49
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.42
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.42
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.27
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.04
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.94
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.55
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.51
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.5
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.48
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.93
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.6
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.13
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.03
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.36
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.74
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.17
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	90.51
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.75
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.52
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.46
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.27
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.2
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	88.86
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	88.63
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.62
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.03
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.91
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.47
d1xpua3	289	Transcription termination factor Rho, ATPase domai	81.54
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.98

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.6e-09  Score=88.30  Aligned_cols=35  Identities=14%  Similarity=-0.020  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|+||+.+.|+||+|||||||+|.|.
T Consensus        16 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~   50 (241)
T d2pmka1          16 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ   50 (241)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999999999999999999985

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.62  E-value=1.7e-08  Score=85.65  Aligned_cols=38  Identities=13%  Similarity=-0.037  Sum_probs=34.7

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++..+|+|||-.|++||++.|+||+|||||||||+|+-
T Consensus        16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccC
Confidence            45678999999999999999999999999999998853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.5e-08  Score=85.22  Aligned_cols=38  Identities=18%  Similarity=0.065  Sum_probs=34.8

Q ss_pred             ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .+..+|+|||-.|++||++.++||+|||||||||+|+-
T Consensus        16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            34568999999999999999999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.57  E-value=1.6e-08  Score=86.66  Aligned_cols=35  Identities=6%  Similarity=-0.050  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|||-.|+||+.+.|+||+|||||||+|.|.
T Consensus        28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred             CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            45899999999999999999999999999999985

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.54  E-value=1.2e-08  Score=84.31  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=32.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +||+|||..|++|+++.|+||.|||||||||+|+
T Consensus        15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~   48 (200)
T d1sgwa_          15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS   48 (200)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred             eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            4899999999999999999999999999999985

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.48  E-value=2.3e-08  Score=85.91  Aligned_cols=35  Identities=9%  Similarity=-0.006  Sum_probs=32.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|+||+.+.|+||+|||||||||.|.
T Consensus        31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence            45899999999999999999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.48  E-value=3.1e-08  Score=84.36  Aligned_cols=34  Identities=21%  Similarity=0.088  Sum_probs=32.6

Q ss_pred             cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .||+|||-.|+||+.+.|+||+|||||||+|.|.
T Consensus        16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE   49 (242)
T ss_dssp             CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            5999999999999999999999999999999985

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=3.1e-08  Score=84.21  Aligned_cols=35  Identities=3%  Similarity=-0.034  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++|+|||-.|++||++.|+||+|||||||||+|+
T Consensus        13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2          13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            46899999999999999999999999999999986

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=2.7e-08  Score=84.60  Aligned_cols=36  Identities=14%  Similarity=0.014  Sum_probs=33.8

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++||+|||-.|+|||++.|+||.|||||||||+|+
T Consensus        14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~   49 (238)
T d1vpla_          14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS   49 (238)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred             CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            356999999999999999999999999999999985

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=3.2e-08  Score=86.00  Aligned_cols=35  Identities=9%  Similarity=0.057  Sum_probs=33.0

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+||+|||-.|+||+++.|+||+|||||||||+|.
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~   83 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLIL   83 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            35999999999999999999999999999999985

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.45  E-value=3.2e-08  Score=84.13  Aligned_cols=35  Identities=6%  Similarity=-0.034  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++|+|||-.|++||++.|+||.|||||||+|+|+
T Consensus        19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~   53 (240)
T d1ji0a_          19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA   53 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence            56899999999999999999999999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.8e-08  Score=84.21  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..||+|||-.|+||+++.|+||+|||||||+|.|.
T Consensus        27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~   61 (251)
T d1jj7a_          27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ   61 (251)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            56999999999999999999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.44  E-value=4.7e-08  Score=83.44  Aligned_cols=36  Identities=8%  Similarity=-0.025  Sum_probs=33.7

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+|||-.|++||++.|+||.|||||||||+|+-
T Consensus        16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence            458999999999999999999999999999999863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.43  E-value=3.6e-08  Score=84.34  Aligned_cols=35  Identities=20%  Similarity=0.099  Sum_probs=33.3

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +++|+|||-.|+|||++.|+||.|||||||+|+|+
T Consensus        17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~   51 (254)
T d1g6ha_          17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT   51 (254)
T ss_dssp             EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHH
Confidence            46899999999999999999999999999999986

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.39  E-value=6.6e-08  Score=82.49  Aligned_cols=35  Identities=9%  Similarity=0.053  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+|+|||-.|++||++.++||+|||||||||.|.
T Consensus        19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~   53 (239)
T d1v43a3          19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHH
Confidence            45899999999999999999999999999999986

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.38  E-value=3.9e-08  Score=84.08  Aligned_cols=37  Identities=11%  Similarity=-0.067  Sum_probs=34.4

Q ss_pred             cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ...+|+|||-.|++||++.|+||+|||||||||+|.-
T Consensus        17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3568999999999999999999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.35  E-value=7.8e-08  Score=82.62  Aligned_cols=35  Identities=14%  Similarity=-0.026  Sum_probs=33.2

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+|||-.|++||++.|+||.|||||||+|+|+
T Consensus        15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~   49 (258)
T d1b0ua_          15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN   49 (258)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence            45899999999999999999999999999999986

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.32  E-value=7.4e-08  Score=81.69  Aligned_cols=33  Identities=12%  Similarity=-0.040  Sum_probs=32.0

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .|+|||-.|++||++.|+||.|||||||||+|+
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~   47 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIA   47 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence            699999999999999999999999999999986

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.21  E-value=7.4e-05  Score=59.02  Aligned_cols=34  Identities=15%  Similarity=0.040  Sum_probs=27.9

Q ss_pred             ccc-ceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |++ +.|=+.||++|+|.|+||+|||||.--++.-
T Consensus        23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            444 3466999999999999999999998776653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.08  E-value=7.3e-05  Score=61.86  Aligned_cols=34  Identities=12%  Similarity=-0.057  Sum_probs=27.6

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      =|+++.|=++||++++|.|+||+|||||+--|+.
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3555544479999999999999999999877654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=9.3e-05  Score=58.61  Aligned_cols=29  Identities=14%  Similarity=-0.011  Sum_probs=24.9

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |=+.+|++++|.|+||||||||.-.++.-
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            56889999999999999999998766543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.00012  Score=58.65  Aligned_cols=26  Identities=8%  Similarity=-0.116  Sum_probs=22.5

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      |=+.+|++++|.|+||||||||.--+
T Consensus        31 GGlp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          31 GGIETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred             CCccCCEEEEEEcCCCCCHHHHHHHH
Confidence            55889999999999999999997433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.94  E-value=0.00022  Score=57.75  Aligned_cols=22  Identities=9%  Similarity=-0.093  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..+|+.||||+||||+.++|+-
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4577889999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.85  E-value=0.00028  Score=55.37  Aligned_cols=29  Identities=14%  Similarity=-0.049  Sum_probs=24.6

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|=+.||++++|-|+||+|||+|.--++.
T Consensus        20 ~GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          20 HGGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            35588999999999999999999765544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00038  Score=55.39  Aligned_cols=28  Identities=11%  Similarity=-0.068  Sum_probs=24.0

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |=|.||++++|.|+||+|||+|.-.++.
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999999665543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00052  Score=56.19  Aligned_cols=29  Identities=10%  Similarity=-0.106  Sum_probs=25.0

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .|.+ ||++++|-|+||+|||||+-.|++-
T Consensus        24 ~G~~-pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          24 PNMV-AGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TTEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcc-CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4666 7999999999999999999877753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.62  E-value=0.00052  Score=55.04  Aligned_cols=31  Identities=16%  Similarity=-0.088  Sum_probs=26.7

Q ss_pred             eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      .|=+.||.+|+|-|+||+|||+|..-++.-+
T Consensus        20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          20 GGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3668899999999999999999998776554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.32  E-value=0.00086  Score=53.53  Aligned_cols=23  Identities=4%  Similarity=-0.324  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCCCchhHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..-+||.||||+||||++|.|+=
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999999764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.26  E-value=0.00086  Score=53.75  Aligned_cols=20  Identities=10%  Similarity=-0.275  Sum_probs=17.9

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|+-||||+||||+.++|+=
T Consensus        48 lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67899999999999998864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.001  Score=53.62  Aligned_cols=20  Identities=0%  Similarity=-0.180  Sum_probs=18.0

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..|+-||||+||||+.++|+
T Consensus        54 ~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56788999999999999886

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.17  E-value=0.00091  Score=55.71  Aligned_cols=19  Identities=5%  Similarity=-0.178  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+||+|||||+++|+
T Consensus        35 I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHh
Confidence            6788999999999999986

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.12  E-value=0.0012  Score=52.59  Aligned_cols=23  Identities=9%  Similarity=0.041  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .++.++|.||||+|||||++.++
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHH
Confidence            56788999999999999999764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.04  E-value=0.0012  Score=56.43  Aligned_cols=25  Identities=16%  Similarity=-0.114  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |+.=.|++||||+|||.|-|+|+=.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4445567899999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.95  E-value=0.0011  Score=54.96  Aligned_cols=25  Identities=8%  Similarity=-0.132  Sum_probs=20.7

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|-+=+|+.||||+|||++.|+|+-
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhh
Confidence            3444578999999999999999974

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0016  Score=52.27  Aligned_cols=19  Identities=11%  Similarity=-0.069  Sum_probs=17.1

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      +|+-||||+||||+.++|+
T Consensus        38 ~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            5788999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.90  E-value=0.0011  Score=53.17  Aligned_cols=22  Identities=0%  Similarity=-0.295  Sum_probs=18.5

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +.+|.||||.||||+++.++=-
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            4566799999999999998743

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.86  E-value=0.0017  Score=52.15  Aligned_cols=20  Identities=15%  Similarity=-0.175  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+-||||.||||+.|+|+=
T Consensus        38 ~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46789999999999998863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.0019  Score=53.77  Aligned_cols=23  Identities=9%  Similarity=0.127  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +|..+.++|+||.|||||+++|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHS
T ss_pred             cCCeEEEECCCCCCHHHHHHhhc
Confidence            36788999999999999999873

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.76  E-value=0.0021  Score=53.46  Aligned_cols=22  Identities=5%  Similarity=-0.297  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +-+|+-||||+|||++.|+|+=
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3468999999999999999983

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0023  Score=53.57  Aligned_cols=23  Identities=4%  Similarity=-0.367  Sum_probs=19.9

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+=+|+-||||+|||++.|+|+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHH
Confidence            44556888999999999999997

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.71  E-value=0.001  Score=57.78  Aligned_cols=29  Identities=7%  Similarity=-0.102  Sum_probs=24.0

Q ss_pred             ceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          190 VSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.-.++.+.-.||-|++||||||||++|.
T Consensus       159 l~~~v~~~~nili~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             HHHHHHHTCCEEEEESTTSSHHHHHHHHG
T ss_pred             HHHHHHhCCCEEEEeeccccchHHHHHHh
Confidence            44456667778999999999999999875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0022  Score=53.56  Aligned_cols=26  Identities=8%  Similarity=-0.192  Sum_probs=21.7

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|.+-.||-||||+|||+|.++|+=
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHH
Confidence            44566688999999999999999853

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0038  Score=51.60  Aligned_cols=29  Identities=7%  Similarity=-0.046  Sum_probs=25.9

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLLVLWC  224 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~~~~~  224 (231)
                      .+++++|=||..|||||+||++.+.++..
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~la   68 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIALMA   68 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHHHH
Confidence            35899999999999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0028  Score=50.22  Aligned_cols=21  Identities=10%  Similarity=-0.320  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++-||||+||||+.++|+=-
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            578899999999999999743

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.003  Score=50.15  Aligned_cols=20  Identities=10%  Similarity=-0.305  Sum_probs=17.9

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+-||||+||||+.+.|+=
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            57889999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0034  Score=52.07  Aligned_cols=22  Identities=5%  Similarity=-0.381  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCCchhHHHHHHH
Q 037424          198 SVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       198 eMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      +=+|+-||||+|||++.++++-
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            3467889999999999998874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.42  E-value=0.0049  Score=50.68  Aligned_cols=28  Identities=11%  Similarity=0.042  Sum_probs=25.1

Q ss_pred             CeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFLLVLWC  224 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~~~~~~  224 (231)
                      .++++|-||..|||||+||++.+.++..
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~~ilA   62 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALIALLA   62 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHHHHHHH
Confidence            4689999999999999999999998753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.0037  Score=49.81  Aligned_cols=20  Identities=5%  Similarity=-0.071  Sum_probs=17.6

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|+-||||+||||+.+.|+=
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            57889999999999998863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0048  Score=53.53  Aligned_cols=23  Identities=0%  Similarity=-0.325  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCCCchhHHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      .-...|.|+||||||||+..|.-
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHH
Confidence            55678999999999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.94  E-value=0.0043  Score=49.59  Aligned_cols=20  Identities=10%  Similarity=-0.295  Sum_probs=17.6

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +|+-||||+||||+.++++=
T Consensus        36 lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.88  E-value=0.0043  Score=52.62  Aligned_cols=21  Identities=14%  Similarity=-0.205  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~~  220 (231)
                      +|+.|+||+||||+.|.+.-+
T Consensus        31 vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh
Confidence            478899999999999999743

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.55  E-value=0.0027  Score=52.96  Aligned_cols=22  Identities=0%  Similarity=-0.067  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      |..+.++|++|.|||||+++|.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHC
T ss_pred             cceEEEECCCCccHHHHHHhhc
Confidence            5677899999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.51  E-value=0.0055  Score=52.98  Aligned_cols=24  Identities=4%  Similarity=-0.281  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..-.+.|.|+||||||||+..|.-
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            345678999999999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.007  Score=53.49  Aligned_cols=19  Identities=11%  Similarity=-0.241  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~  218 (231)
                      .+|+|+||+|||||+++|.
T Consensus        59 Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5789999999999999985

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.011  Score=49.69  Aligned_cols=25  Identities=12%  Similarity=-0.158  Sum_probs=22.5

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQV  216 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~  216 (231)
                      |=+.+|++|++-|+||||||||.=.
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~   73 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQ   73 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHH
Confidence            7789999999999999999999633

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.014  Score=49.76  Aligned_cols=25  Identities=20%  Similarity=-0.100  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |.-..|++||||+|||.|.|+|+=.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhh
Confidence            5556789999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.60  E-value=0.016  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=-0.048  Sum_probs=19.9

Q ss_pred             eCCeEEEEecCCCCCchhHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVL  217 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L  217 (231)
                      .|+=|+||-||+||||||.|.++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~  178 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAG  178 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHH
Confidence            34448899999999999999986

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.13  E-value=0.018  Score=51.66  Aligned_cols=20  Identities=15%  Similarity=-0.150  Sum_probs=17.7

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      .|++||||+|||-+.|+|+=
T Consensus        52 ILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          52 ILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46779999999999999974

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.07  E-value=0.02  Score=50.12  Aligned_cols=25  Identities=12%  Similarity=-0.165  Sum_probs=20.8

Q ss_pred             CCeEEEEecCCCCCchhHHHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      .++-+|+-||||+|||+|-++|+=.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457788899999999999998743

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.024  Score=48.84  Aligned_cols=20  Identities=15%  Similarity=-0.094  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      ++|+|+||||||++++.|..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999987643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.029  Score=48.85  Aligned_cols=22  Identities=5%  Similarity=-0.112  Sum_probs=18.2

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +.+++|-|+||+||||.+..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            3589999999999999986543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.36  E-value=0.035  Score=48.03  Aligned_cols=29  Identities=7%  Similarity=-0.145  Sum_probs=22.8

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      |.-.|.=..|+.||||.|||.+-|+|+--
T Consensus       118 ~~~~~~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         118 GHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             TEEEESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             hcccCCceEEEECCCCccHHHHHHHHHHH
Confidence            44445556677899999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.33  E-value=0.038  Score=43.19  Aligned_cols=25  Identities=0%  Similarity=-0.210  Sum_probs=22.8

Q ss_pred             EeCCeEEEEecCCCCCchhHHHHHH
Q 037424          194 LKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       194 iKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      .+||.++++=|+=|||||||-|.+.
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~   54 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGML   54 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHH
Confidence            3699999999999999999999875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.045  Score=46.89  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=19.9

Q ss_pred             EEEEecCCCCCchhHHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +..|-|+||||||||-+.|..+.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            66789999999999999987654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.17  E-value=0.061  Score=45.17  Aligned_cols=25  Identities=20%  Similarity=-0.129  Sum_probs=21.8

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQV  216 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~  216 (231)
                      |=+.+|++|.+-|+||||||||.=.
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~   79 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALH   79 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHH
Confidence            4578999999999999999999633

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.51  E-value=0.079  Score=44.91  Aligned_cols=20  Identities=0%  Similarity=-0.346  Sum_probs=17.0

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.|-|+||||||||-+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            45688999999999998774

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.75  E-value=0.063  Score=42.98  Aligned_cols=20  Identities=5%  Similarity=-0.341  Sum_probs=17.3

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q 037424          200 NLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       200 TLVLGrPGSGcSTlLK~L~~  219 (231)
                      +.+-||||+|||-||+++.=
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            56889999999999998754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.52  E-value=0.096  Score=43.78  Aligned_cols=28  Identities=7%  Similarity=-0.095  Sum_probs=23.7

Q ss_pred             eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424          192 GILKPGSVNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~  219 (231)
                      |=+..|++|.+-|+||||||||.-.+..
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHH
Confidence            6788999999999999999998744433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.46  E-value=0.075  Score=43.83  Aligned_cols=22  Identities=9%  Similarity=-0.080  Sum_probs=18.7

Q ss_pred             CeEEEEecCCCCCchhHHHHHH
Q 037424          197 GSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       197 GeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      +--.+|+|.|.+|||||+++|.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~  133 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLA  133 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEEecCccchhhhhhhhh
Confidence            3347899999999999999874

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.27  E-value=0.094  Score=44.54  Aligned_cols=27  Identities=15%  Similarity=-0.047  Sum_probs=22.2

Q ss_pred             eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          195 KPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       195 KPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ||.-..|++||||+|||.+-|.|+=..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHh
Confidence            454456888999999999999998664

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.097  Score=41.88  Aligned_cols=21  Identities=10%  Similarity=-0.078  Sum_probs=17.2

Q ss_pred             EEEEecCCCCCchhHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFL  219 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~  219 (231)
                      ..|+=||||+||||+-+.++=
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            567789999999999886543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.86  E-value=0.11  Score=42.72  Aligned_cols=23  Identities=0%  Similarity=-0.321  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCchhHHHHHH
Q 037424          196 PGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       196 PGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.++.|-|.+|.|||||.+.++
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            46788999999999999998875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.063  Score=45.06  Aligned_cols=32  Identities=19%  Similarity=0.082  Sum_probs=24.4

Q ss_pred             ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424          184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~  218 (231)
                      ..+|+.+++   |=-.+.|+|+.++||||||+.||
T Consensus        22 l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~   53 (277)
T d1f5na2          22 LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLA   53 (277)
T ss_dssp             HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHT
T ss_pred             HHHHHcCCC---CEEEEEEECCCCCCHHHHHHHHc
Confidence            345666655   32478899999999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.62  E-value=0.098  Score=43.84  Aligned_cols=21  Identities=10%  Similarity=-0.145  Sum_probs=18.3

Q ss_pred             EEecCCCCCchhHHHHHHHHH
Q 037424          201 LADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       201 LVLGrPGSGcSTlLK~L~~~~  221 (231)
                      ||+|+||.|||++..-|+--.
T Consensus        43 lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          43 LLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEECCTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHHHH
Confidence            688999999999999988543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.03  E-value=0.15  Score=40.92  Aligned_cols=22  Identities=5%  Similarity=-0.141  Sum_probs=18.9

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q 037424          201 LADCLTFLHPLDVFQVLFLLVL  222 (231)
Q Consensus       201 LVLGrPGSGcSTlLK~L~~~~~  222 (231)
                      +++|+||.|||++..-|+--..
T Consensus        47 lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          47 VLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEecCCcccHHHHHHHHHHHH
Confidence            6889999999999999886543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.91  E-value=0.22  Score=41.30  Aligned_cols=22  Identities=0%  Similarity=-0.263  Sum_probs=17.8

Q ss_pred             EEEEecCCCCCchhHHHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLFLL  220 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~~~  220 (231)
                      ...+.|||++|||+|+++|.-+
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3456699999999999998654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.47  E-value=0.22  Score=40.70  Aligned_cols=20  Identities=5%  Similarity=-0.252  Sum_probs=18.1

Q ss_pred             EEEEecCCCCCchhHHHHHH
Q 037424          199 VNLADCLTFLHPLDVFQVLF  218 (231)
Q Consensus       199 MTLVLGrPGSGcSTlLK~L~  218 (231)
                      ++.|+|.-.||||||+++|.
T Consensus        28 ~ivvvG~~SsGKSsliNaLl   47 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHh
Confidence            57789999999999999985

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=81.54  E-value=0.35  Score=40.91  Aligned_cols=35  Identities=17%  Similarity=0.072  Sum_probs=25.2

Q ss_pred             ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424          186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +++-+.=+.| |.-.+|.|++|+|||||+..|+--.
T Consensus        33 ~ID~l~Pigr-GQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          33 VLDLASPIGR-GQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHSCCBT-TCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeecccccC-CCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            4555555444 4455788999999999999887543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.98  E-value=0.32  Score=42.56  Aligned_cols=21  Identities=5%  Similarity=-0.192  Sum_probs=17.8

Q ss_pred             EEecCCCCCchhHHHHHHHHH
Q 037424          201 LADCLTFLHPLDVFQVLFLLV  221 (231)
Q Consensus       201 LVLGrPGSGcSTlLK~L~~~~  221 (231)
                      +|+|+||.|||++..-|+.-+
T Consensus        47 llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          47 VLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             EEEECTTSCHHHHHHHHHHHH
T ss_pred             eEECCCCCCHHHHHHHHHHHH
Confidence            577999999999999887643