Citrus Sinensis ID: 037431


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
MESNQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILSP
ccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHccccEEEEEccc
ccccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccc
MESNQASSLCIAVIGATGELARRKIFQALFALYYsgflpenagivSYSRKNLIDEDLRSITASVLSCRIDhlygshaaiqiqvPAIQFLILSP
MESNQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILSP
MESNQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILSP
********LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLIL**
******S****AVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILS*
********LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILSP
*****ASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILSP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESNQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQIQVPAIQFLILSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query93 2.2.26 [Sep-21-2011]
Q93ZW0 625 Glucose-6-phosphate 1-deh yes no 0.720 0.107 0.731 9e-23
Q43793 593 Glucose-6-phosphate 1-deh N/A no 0.741 0.116 0.514 7e-15
Q43727 576 Glucose-6-phosphate 1-deh no no 0.698 0.112 0.507 2e-14
Q9FY99 596 Glucose-6-phosphate 1-deh no no 0.688 0.107 0.531 2e-14
Q8L743 599 Glucose-6-phosphate 1-deh no no 0.709 0.110 0.515 3e-14
O24357 574 Glucose-6-phosphate 1-deh N/A no 0.720 0.116 0.477 1e-13
Q43839 577 Glucose-6-phosphate 1-deh N/A no 0.688 0.110 0.515 1e-13
Q9LK23 516 Glucose-6-phosphate 1-deh no no 0.580 0.104 0.472 4e-08
P37830 511 Glucose-6-phosphate 1-deh N/A no 0.666 0.121 0.460 2e-07
Q9FJI5 515 Glucose-6-phosphate 1-deh no no 0.580 0.104 0.472 3e-07
>sp|Q93ZW0|G6PD4_ARATH Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420 PE=2 SV=1 Back     alignment and function desciption
 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 56/67 (83%)

Query: 5   QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASV 64
           + +SLCIAV+GATGELAR KIF ALFALYYSG+LPE+  I   SRKNL DEDLRSI AS 
Sbjct: 150 RRASLCIAVVGATGELARGKIFPALFALYYSGYLPEDVAIFGVSRKNLTDEDLRSIIAST 209

Query: 65  LSCRIDH 71
           L+CR+DH
Sbjct: 210 LTCRVDH 216




Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. The main function of this enzyme is to provide reducing power (NADPH) and pentose phosphates for fatty acid and nucleic acid synthesis which are involved in membrane synthesis and cell division.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 9
>sp|Q43793|G6PDC_TOBAC Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q43727|G6PD1_ARATH Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=APG1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FY99|G6PD2_ARATH Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g13110 PE=2 SV=2 Back     alignment and function description
>sp|Q8L743|G6PD3_ARATH Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=At1g24280 PE=2 SV=2 Back     alignment and function description
>sp|O24357|G6PDC_SPIOL Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Spinacia oleracea GN=G6PD PE=2 SV=1 Back     alignment and function description
>sp|Q43839|G6PDC_SOLTU Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q9LK23|G6PD5_ARATH Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=ACG9 PE=2 SV=1 Back     alignment and function description
>sp|P37830|G6PD_SOLTU Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH PE=2 SV=1 Back     alignment and function description
>sp|Q9FJI5|G6PD6_ARATH Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=ACG12 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query93
356503998 612 PREDICTED: glucose-6-phosphate 1-dehydro 0.688 0.104 0.812 4e-24
356572902 604 PREDICTED: glucose-6-phosphate 1-dehydro 0.763 0.117 0.732 4e-24
359487571 632 PREDICTED: glucose-6-phosphate 1-dehydro 0.763 0.112 0.746 8e-24
449453992 638 PREDICTED: glucose-6-phosphate 1-dehydro 0.763 0.111 0.732 1e-23
357511753 601 Glucose-6-phosphate 1-dehydrogenase [Med 0.763 0.118 0.746 1e-23
242035923 627 hypothetical protein SORBIDRAFT_01g03706 0.741 0.110 0.724 6e-22
218192705 629 hypothetical protein OsI_11322 [Oryza sa 0.709 0.104 0.712 3e-21
326487340 597 predicted protein [Hordeum vulgare subsp 0.688 0.107 0.75 3e-21
115452687 629 Os03g0318500 [Oryza sativa Japonica Grou 0.709 0.104 0.712 3e-21
297849248 608 glucose-6-phosphate dehydrogenase 4 [Ara 0.720 0.110 0.731 3e-21
>gi|356503998|ref|XP_003520786.1| PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/64 (81%), Positives = 57/64 (89%)

Query: 8   SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSC 67
           SLCIAVIGATGELA+RKIF ALFALYYSGFLPEN GI  YSRK++ DEDLRSI AS L+C
Sbjct: 139 SLCIAVIGATGELAKRKIFPALFALYYSGFLPENVGIFGYSRKDITDEDLRSIIASTLTC 198

Query: 68  RIDH 71
           R+DH
Sbjct: 199 RVDH 202




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572902|ref|XP_003554604.1| PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|359487571|ref|XP_002276987.2| PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Vitis vinifera] gi|296089824|emb|CBI39643.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453992|ref|XP_004144740.1| PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Cucumis sativus] gi|449490774|ref|XP_004158703.1| PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357511753|ref|XP_003626165.1| Glucose-6-phosphate 1-dehydrogenase [Medicago truncatula] gi|355501180|gb|AES82383.1| Glucose-6-phosphate 1-dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|242035923|ref|XP_002465356.1| hypothetical protein SORBIDRAFT_01g037060 [Sorghum bicolor] gi|241919210|gb|EER92354.1| hypothetical protein SORBIDRAFT_01g037060 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|218192705|gb|EEC75132.1| hypothetical protein OsI_11322 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|326487340|dbj|BAJ89654.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|115452687|ref|NP_001049944.1| Os03g0318500 [Oryza sativa Japonica Group] gi|108707842|gb|ABF95637.1| Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113548415|dbj|BAF11858.1| Os03g0318500 [Oryza sativa Japonica Group] gi|222624821|gb|EEE58953.1| hypothetical protein OsJ_10634 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297849248|ref|XP_002892505.1| glucose-6-phosphate dehydrogenase 4 [Arabidopsis lyrata subsp. lyrata] gi|297338347|gb|EFH68764.1| glucose-6-phosphate dehydrogenase 4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query93
TAIR|locus:2179887 596 G6PD2 "glucose-6-phosphate deh 0.741 0.115 0.492 1.2e-14
TAIR|locus:2032412 599 G6PD3 "glucose-6-phosphate deh 0.709 0.110 0.515 2.1e-14
TAIR|locus:2165154 576 G6PD1 "glucose-6-phosphate deh 0.688 0.111 0.515 3.8e-14
TAIR|locus:2086558 516 G6PD5 "glucose-6-phosphate deh 0.580 0.104 0.472 7.7e-08
TAIR|locus:2154805 515 G6PD6 "glucose-6-phosphate deh 0.580 0.104 0.472 4.3e-07
UNIPROTKB|E9PD92 256 G6PD "Glucose-6-phosphate 1-de 0.591 0.214 0.381 3.1e-06
UNIPROTKB|E7EM57 320 G6PD "Glucose-6-phosphate 1-de 0.591 0.171 0.381 5e-06
UNIPROTKB|E7EUI8 339 G6PD "Glucose-6-phosphate 1-de 0.591 0.162 0.381 5.6e-06
SGD|S000005185 505 ZWF1 "Glucose-6-phosphate dehy 0.526 0.097 0.46 8.2e-06
MGI|MGI:105979 515 G6pdx "glucose-6-phosphate deh 0.591 0.106 0.381 8.5e-06
TAIR|locus:2179887 G6PD2 "glucose-6-phosphate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 182 (69.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 34/69 (49%), Positives = 49/69 (71%)

Query:     2 ESNQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61
             +    S++ I V+GA+G+LA++KIF ALFALYY G LPE+  I  YSR  + D +LR++ 
Sbjct:   103 DGQSQSTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYSRSKMTDVELRNMV 162

Query:    62 ASVLSCRID 70
             +  L+CRID
Sbjct:   163 SKTLTCRID 171


GO:0000166 "nucleotide binding" evidence=IEA
GO:0004345 "glucose-6-phosphate dehydrogenase activity" evidence=IEA;ISS;IDA
GO:0006006 "glucose metabolic process" evidence=IEA;ISS;IDA
GO:0009507 "chloroplast" evidence=ISM;ISS
GO:0050661 "NADP binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009051 "pentose-phosphate shunt, oxidative branch" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2032412 G6PD3 "glucose-6-phosphate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165154 G6PD1 "glucose-6-phosphate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086558 G6PD5 "glucose-6-phosphate dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154805 G6PD6 "glucose-6-phosphate dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E9PD92 G6PD "Glucose-6-phosphate 1-dehydrogenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EM57 G6PD "Glucose-6-phosphate 1-dehydrogenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EUI8 G6PD "Glucose-6-phosphate 1-dehydrogenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000005185 ZWF1 "Glucose-6-phosphate dehydrogenase (G6PD)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:105979 G6pdx "glucose-6-phosphate dehydrogenase X-linked" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93ZW0G6PD4_ARATH1, ., 1, ., 1, ., 4, 90.73130.72040.1072yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00022550001
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (534 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00030020001
SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (266 aa)
    0.977
GSVIVG00037200001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (318 aa)
    0.964
GSVIVG00014624001
RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (340 aa)
     0.941
GSVIVG00015125001
RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (623 aa)
     0.919
GSVIVG00002492001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (306 aa)
    0.629
GSVIVG00021207001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (280 aa)
    0.608
GSVIVG00006209001
SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (441 aa)
      0.487
GSVIVG00017233001
RecName- Full=40S ribosomal protein S12; (140 aa)
       0.483

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query93
PLN02640 573 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrog 1e-20
PLN02333 604 PLN02333, PLN02333, glucose-6-phosphate 1-dehydrog 7e-19
pfam00479 183 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogena 1e-14
PTZ00309 542 PTZ00309, PTZ00309, glucose-6-phosphate 1-dehydrog 2e-13
TIGR00871 482 TIGR00871, zwf, glucose-6-phosphate 1-dehydrogenas 9e-13
PLN02539 491 PLN02539, PLN02539, glucose-6-phosphate 1-dehydrog 1e-12
PRK05722 495 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrog 3e-12
COG0364 483 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase 4e-11
PRK12854 484 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrog 9e-09
PRK12853 482 PRK12853, PRK12853, glucose-6-phosphate 1-dehydrog 4e-08
>gnl|CDD|215344 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
 Score = 84.3 bits (208), Expect = 1e-20
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query: 7   SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLS 66
           S+L I V+GA+G+LA++KIF ALFAL+Y  +LPEN  +  Y+R  L DE+LR + +S L+
Sbjct: 87  STLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRDMISSTLT 146

Query: 67  CRID 70
           CRID
Sbjct: 147 CRID 150


Length = 573

>gnl|CDD|215191 PLN02333, PLN02333, glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>gnl|CDD|215937 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding domain Back     alignment and domain information
>gnl|CDD|240353 PTZ00309, PTZ00309, glucose-6-phosphate 1-dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233162 TIGR00871, zwf, glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>gnl|CDD|178154 PLN02539, PLN02539, glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>gnl|CDD|235579 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|223441 COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237234 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|237233 PRK12853, PRK12853, glucose-6-phosphate 1-dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 93
PF00479 183 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD bin 99.89
PLN02333 604 glucose-6-phosphate 1-dehydrogenase 99.86
PLN02640 573 glucose-6-phosphate 1-dehydrogenase 99.86
PRK05722 495 glucose-6-phosphate 1-dehydrogenase; Validated 99.85
PRK12854 484 glucose-6-phosphate 1-dehydrogenase; Provisional 99.85
COG0364 483 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydr 99.85
PRK12853 482 glucose-6-phosphate 1-dehydrogenase; Provisional 99.84
TIGR00871 482 zwf glucose-6-phosphate 1-dehydrogenase. This is a 99.84
PLN02539 491 glucose-6-phosphate 1-dehydrogenase 99.84
PTZ00309 542 glucose-6-phosphate 1-dehydrogenase; Provisional 99.81
KOG0563 499 consensus Glucose-6-phosphate 1-dehydrogenase [Car 99.8
PF1390595 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ 90.24
PF13460 183 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X 89.98
PF05368 233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 88.89
cd03011123 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso 87.64
PLN00141 251 Tic62-NAD(P)-related group II protein; Provisional 85.76
PRK07454 241 short chain dehydrogenase; Provisional 84.59
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1 Back     alignment and domain information
Probab=99.89  E-value=1.4e-23  Score=152.92  Aligned_cols=68  Identities=34%  Similarity=0.574  Sum_probs=56.2

Q ss_pred             EEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCCccChhHHHh
Q 037431           12 AVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQ   80 (93)
Q Consensus        12 VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~~e~~~~~~~   80 (93)
                      ||||||||||+|||+||||+|+++|.||++++|||++|+++++++|++++++++++ ......+.+.++
T Consensus         1 VifGatGDLA~RKL~PaL~~L~~~g~lp~~~~Iig~~R~~~~~~~f~~~v~~~l~~-~~~~~~~~~~~~   68 (183)
T PF00479_consen    1 VIFGATGDLAKRKLLPALYNLYRDGLLPEDFRIIGVARSDLSDEEFREKVREALKK-FSREEIDEEKWE   68 (183)
T ss_dssp             EEETTTSHHHHHTHHHHHHHHHHTTSS-SSEEEEEEESS--SHHCCHHHHHHCCGG--S-CCCSHHHHH
T ss_pred             CEeccccHHHHhHHHHHHHHHHHhCCCCCCcEEEEecCCcCCHHHHHHHHHHHHHh-hhccccCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999 223333434444



1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....

>PLN02333 glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>PLN02640 glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated Back     alignment and domain information
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional Back     alignment and domain information
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional Back     alignment and domain information
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>PLN02539 glucose-6-phosphate 1-dehydrogenase Back     alignment and domain information
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional Back     alignment and domain information
>KOG0563 consensus Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A Back     alignment and domain information
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B Back     alignment and domain information
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif Back     alignment and domain information
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional Back     alignment and domain information
>PRK07454 short chain dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query93
4e9i_A 541 Glucose-6-P Dehydrogenase (Apo Form) From Trypanoso 4e-08
1qki_A 514 X-Ray Structure Of Human Glucose 6-Phosphate Dehydr 4e-07
2bh9_A 489 X-Ray Structure Of A Deletion Variant Of Human Gluc 4e-07
1e7m_A 485 Active Site Mutant (D177->n) Of Glucose 6-Phosphate 3e-05
1dpg_A 485 Glucose 6-Phosphate Dehydrogenase From Leuconostoc 3e-05
2dpg_A 485 Complex Of Inactive Mutant (H240->n) Of Glucose 6-P 3e-05
1e77_A 485 Complex Of Active Mutant (Q365->c) Of Glucose 6-Pho 3e-05
1h93_A 485 Active Mutant (S215->c) Of Glucose 6-Phosphate Dehy 3e-05
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma Cruzi Length = 541 Back     alignment and structure

Iteration: 1

Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLID-EDLRSITAS 63 ++ +L I V+GA+G+LA++K F ALF LY +G LP + I+ Y+R + D E + T + Sbjct: 51 RSRALTIVVLGASGDLAKKKTFPALFQLYCNGMLPRDVNILGYARSTMEDVEKWKKDTLA 110 Query: 64 VLSCRID 70 R+D Sbjct: 111 GFFTRLD 117
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase (Variant Canton R459l) Complexed With Structural Nadp+ Length = 514 Back     alignment and structure
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6- Phosphate Dehydrogenase Complexed With Structural And Coenzyme Nadp Length = 489 Back     alignment and structure
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides Length = 485 Back     alignment and structure
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides Length = 485 Back     alignment and structure
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose 6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides With Nadp+ Length = 485 Back     alignment and structure
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides With Substrate Length = 485 Back     alignment and structure
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides Length = 485 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query93
2bh9_A 489 G6PD, glucose-6-phosphate 1-dehydrogenase; oxidore 8e-16
4e9i_A 541 Glucose-6-phosphate 1-dehydrogenase; pentose phosp 4e-14
1dpg_A 485 G6PD, glucose 6-phosphate dehydrogenase; oxidoredu 5e-14
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* Length = 489 Back     alignment and structure
 Score = 69.9 bits (172), Expect = 8e-16
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 5  QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASV 64
          Q+ +    ++GA+G+LA++KI+  ++ L+  G LPEN  IV Y+R  L   D+R  +   
Sbjct: 2  QSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPF 61

Query: 65 LSCRIDH 71
               + 
Sbjct: 62 FKATPEE 68


>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A* Length = 541 Back     alignment and structure
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A* Length = 485 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query93
1dpg_A 485 G6PD, glucose 6-phosphate dehydrogenase; oxidoredu 99.87
2bh9_A 489 G6PD, glucose-6-phosphate 1-dehydrogenase; oxidore 99.86
4e9i_A 541 Glucose-6-phosphate 1-dehydrogenase; pentose phosp 99.86
1vl0_A 292 DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s 82.12
4evm_A138 Thioredoxin family protein; structural genomics, n 81.41
2yut_A 207 Putative short-chain oxidoreductase; alpha and bet 81.38
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A* Back     alignment and structure
Probab=99.87  E-value=3.4e-22  Score=162.63  Aligned_cols=65  Identities=26%  Similarity=0.551  Sum_probs=61.9

Q ss_pred             CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhccc
Q 037431            5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRI   69 (93)
Q Consensus         5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~   69 (93)
                      .+.++++||||||||||+|||+||||+|+++|+||++++|||++|+++++++|++.++++++++.
T Consensus         2 ~~~~~~~VIFGatGDLA~RKL~PaLy~L~~~g~Lp~~~~iiG~aR~~~~~~~~r~~~~~~l~~~~   66 (485)
T 1dpg_A            2 SEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFT   66 (485)
T ss_dssp             CCCCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGC
T ss_pred             CCCCeEEEEECCcHHHHHHhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhcc
Confidence            46789999999999999999999999999999999999999999999999999999999998764



>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* Back     alignment and structure
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A* Back     alignment and structure
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Back     alignment and structure
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Back     alignment and structure
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 93
d1qkia1203 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate d 1e-15
d1h9aa1 195 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate de 1e-14
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 66.2 bits (161), Expect = 1e-15
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 4  NQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63
          +Q+ +    ++GA+G+LA++KI+  ++ L+  G LPEN  IV Y+R  L   D+R  +  
Sbjct: 16 HQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEP 75

Query: 64 VLSCRIDH 71
                + 
Sbjct: 76 FFKATPEE 83


>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query93
d1h9aa1 195 Glucose 6-phosphate dehydrogenase, N-terminal doma 99.92
d1qkia1203 Glucose 6-phosphate dehydrogenase, N-terminal doma 99.91
d1vl0a_ 281 DTDP-4-dehydrorhamnose reductase RfbD {Clostridium 87.78
d1hdoa_ 205 Biliverdin IX beta reductase {Human (Homo sapiens) 82.77
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Leuconostoc mesenteroides [TaxId: 1245]
Probab=99.92  E-value=7.7e-26  Score=163.03  Aligned_cols=70  Identities=26%  Similarity=0.508  Sum_probs=64.5

Q ss_pred             CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCCccC
Q 037431            5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYG   74 (93)
Q Consensus         5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~~e~   74 (93)
                      .+.++.+||||||||||+|||+||||+|+++|.||++++|||+||+++++++|+++++++++++.+....
T Consensus         2 ~e~~t~lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~~~~   71 (195)
T d1h9aa1           2 SEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQ   71 (195)
T ss_dssp             CCCCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGCSCHHH
T ss_pred             CCCceEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCcHHHHHHHHHHHHhhccchHhh
Confidence            3567889999999999999999999999999999999999999999999999999999999987765433



>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure