Citrus Sinensis ID: 037438

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQVLPN
Secondary Structure (PSIPRED)
cEEEEHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEHHHHHHHHHHHHHHccccEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
givgsglmvtttswcvhvrgplfvsvfTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGkgnemkkqsqlvpaantskesesieisitspneeikelndsrkgdqvlpn
Flexible Loop (DISEMBL)
givgsglmVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVpaantskesesieisitspneeikelndsrkgdqvlpn
Low Complexity Region (SEG)
GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSvvavavaaSLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVPAANTskesesieisitspneeiKELNDSRKGDQVLPN
Disordered region (IsUnstruct)
****SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK*************************************************
Disordered Region (DISOPRED)
GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG**************************************************
Disordered Region (DISEMBL)
GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK*******************ISITSPNEEIK**************
Disordered Region (DISPRO)
GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN***********************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQVLPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
F4HVM3	356	WAT1-related protein At1g	yes	no	0.805	0.266	0.452	2e-18
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.847	0.243	0.4	5e-17
Q9LV20	383	WAT1-related protein At3g	no	no	0.771	0.237	0.457	1e-16
Q4PT23	355	WAT1-related protein At1g	no	no	0.872	0.290	0.394	2e-16
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.838	0.254	0.398	7e-15
Q94JU2	367	WAT1-related protein At3g	no	no	0.923	0.297	0.396	2e-14
Q9SUF1	384	WAT1-related protein At4g	no	no	0.881	0.270	0.366	1e-13
F4IQX1	336	WAT1-related protein At2g	no	no	0.762	0.267	0.421	4e-13
Q8GXB4	374	WAT1-related protein At1g	no	no	0.584	0.184	0.478	4e-13
Q9LPF1	370	WAT1-related protein At1g	no	no	0.805	0.256	0.349	4e-13

>sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170 OS=Arabidopsis thaliana GN=At1g68170 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 61/95 (64%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
            I+ SG++V   +WC+  RGPLFVSVF+P+ +V VA+  S +LDE LHLGS++G  +I+ 
Sbjct: 252 AILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALVGSFLLDETLHLGSIIGTVIIVG 311

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEIS 95
            LY VLW K  EMK          T+K S+ I ++
Sbjct: 312 ALYIVLWAKNKEMKSMLTTSDHNETNKTSKDITVN 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G V SG+  +   WC+   GP+FV+V+ P+  +AVA+ AS+IL E+ +LG + GA LI+ 
Sbjct: 272 GFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIII 331

Query: 61  GLYAVLWGKGNE-----MKKQSQLVPAANTSKESESIEISITSPN 100
           GLY VLWGK  E     ++ +S +VP        +S  + I S N
Sbjct: 332 GLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLIINSSN 376

Pinus taeda (taxid: 3352)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GI+ SGL+V   +WC++  GP+FV+VF PL  + VA  A LIL ++L+ G ++GA  IM 
Sbjct: 279 GIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIML 338

Query: 61  GLYAVLWGKGNEMK---KQSQLVPAANTSKESES 91
           GLY VLWGK  E K   ++SQ  P + T    E+
Sbjct: 339 GLYLVLWGKNEERKLALEESQQDPESLTKHLLEA 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270 OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 70/104 (67%), Gaps = 1/104 (0%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG++V   +WC+  +GPLFV+VF+P+ +V VA+  S  L+E LHLGS++GA +++ 
Sbjct: 251 GIVVSGMVVPLVAWCIATKGPLFVTVFSPIRLVIVALIGSFALEEPLHLGSIIGAMIMVG 310

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEI-SITSPNEEI 103
           G+Y V+W K  E K  S       T+K ++ +++ +++S N ++
Sbjct: 311 GVYLVVWCKMKEKKSASTTSDHIETNKNNKELDLGNLSSVNRDV 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 9/108 (8%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG+      WC+   GP+FV+V+ P+  + VA+ AS+ L E+ +LG ++GA LI+ 
Sbjct: 273 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIA 332

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKE---------SESIEISITSP 99
           GLY VL+GK  E K  +    A  +S E           SI+ SIT+P
Sbjct: 333 GLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRNSIKSSITTP 380

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLI-LDEKLHLGSVLGATLIM 59
           G+ GS +  T  +W + ++GPLFV++F PLS +A+AVA  +I L + L++GS++GAT+I 
Sbjct: 255 GLFGSCINNTIHTWALRIKGPLFVAMFKPLS-IAIAVAMGVIFLRDSLYIGSLIGATVIT 313

Query: 60  CGLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKE-LNDSRKGDQ 114
            G Y V+WGK  E+     LV   N +   E+ E  + SP+   K  L +S K D+
Sbjct: 314 IGFYTVMWGKAKEV----ALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKNDE 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG+        +  RGP+FV+ F PL ++ VA+ AS IL E++H G V+G  +I  
Sbjct: 261 GIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAA 320

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDS 109
           GLY V+WGKG + +     V   +  +++   E+ IT+ +E+  +L  S
Sbjct: 321 GLYMVVWGKGKDYE-----VSGLDILEKNSLQELPITTKSEDDNKLVSS 364

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQX1|WTR12_ARATH WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 5/95 (5%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV S L        +  RGP+FV+ F PL ++ VA+ +S+I DE+++LG  LGAT+I  
Sbjct: 233 GIVCSALGYYIGGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICV 292

Query: 61  GLYAVLWGKGNEMKKQS--QL---VPAANTSKESE 90
           GLY V+WGK  + +  S  Q+   +  A TSK+ E
Sbjct: 293 GLYLVIWGKAKDYEYPSTPQIDDDLAQATTSKQKE 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 49/69 (71%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G+V S L     SW +  +GPL+VSVF+PL +V VA+ +  +L+EKL+ G+ +G+ L++ 
Sbjct: 258 GVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLEEKLYTGTFMGSALVVI 317

Query: 61  GLYAVLWGK 69
           GLY VLWGK
Sbjct: 318 GLYGVLWGK 326

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 8/103 (7%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G+V SG+     S  +  RGP+F + F+P+ ++  A   +L+L EK+HLGS++GA  I+ 
Sbjct: 257 GVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVL 316

Query: 61  GLYAVLWGKGNE--------MKKQSQLVPAANTSKESESIEIS 95
           GLY+V+WGK  +        +  +SQ +P  N  K++   ++S
Sbjct: 317 GLYSVVWGKSKDEVNPLDEKIVAKSQELPITNVVKQTNGHDVS 359

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
357445679	392	Auxin-induced protein 5NG4 [Medicago tru	0.932	0.280	0.567	5e-29
449519553	384	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.283	0.552	9e-28
449467575	168	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.648	0.552	1e-27
388506670	389	unknown [Lotus japonicus]	0.822	0.249	0.622	2e-27
357445673	394	Auxin-induced protein 5NG4 [Medicago tru	0.949	0.284	0.516	2e-27
388513971	283	unknown [Lotus japonicus]	0.822	0.342	0.622	3e-27
356525918	405	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.269	0.543	8e-27
356557527	401	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.271	0.526	9e-26
356528066	365	PREDICTED: auxin-induced protein 5NG4-li	0.771	0.249	0.604	1e-25
124360291	282	Integral membrane protein DUF6 containin	0.915	0.382	0.513	1e-25

>gi|357445679|ref|XP_003593117.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482165|gb|AES63368.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG MV   SWCVH+RGPLF SVFTPL ++ VA+A   IL+EKLHLGS++GA LI+C
Sbjct: 263 GIVVSGAMVAVISWCVHMRGPLFASVFTPLMLLMVALAGCTILNEKLHLGSIIGAVLIVC 322

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRK 111
           GLYAV+WGK  EMKK++QLVP+ N   E + +EI + S  ++   LN++ +
Sbjct: 323 GLYAVVWGKSKEMKKKNQLVPSKN-PHEFDPVEIVVRSIEKDKSNLNNNNQ 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519553|ref|XP_004166799.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIVGSG MVT  +WCV +RGPL+VSVF+PL ++ VA+A SL LDEKLHLGSV+GA LI+C
Sbjct: 268 GIVGSGAMVTVMAWCVRMRGPLYVSVFSPLMLLIVAIAGSLFLDEKLHLGSVVGAMLIVC 327

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPN----EEIKELNDSR 110
           GLY VLWGK  EM K  QL P+ +   + E  +I++T+PN      I+++N ++
Sbjct: 328 GLYMVLWGKSKEMNKCLQLTPSESIG-QLELKDIAVTTPNPLNETHIQDINANK 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467575|ref|XP_004151498.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIVGSG MVT  +WCV +RGPL+VSVF+PL ++ VA+A SL LDEKLHLGSV+GA LI+C
Sbjct: 52  GIVGSGAMVTVMAWCVRMRGPLYVSVFSPLMLLIVAIAGSLFLDEKLHLGSVVGAMLIVC 111

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPN----EEIKELNDSR 110
           GLY VLWGK  EM K  QL P+ +   + E  +I++T+PN      I+++N ++
Sbjct: 112 GLYMVLWGKSKEMNKCLQLTPSESIG-QLELKDIAVTTPNPLNETHIQDINANK 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506670|gb|AFK41401.1| unknown [Lotus japonicus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SGL+V   S+CV +RGPLF S+F PL ++ VA+AA L+LDEKL+LGSVLGA LI+C
Sbjct: 267 GIVASGLVVIMISYCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVLGAGLIVC 326

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITS 98
           GLY VLWGK  EMKK++QL+P  NT K+ E  EI++ S
Sbjct: 327 GLYTVLWGKSKEMKKKTQLIPLENT-KQPEVTEIAVMS 363

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445673|ref|XP_003593114.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482162|gb|AES63365.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 87/118 (73%), Gaps = 6/118 (5%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G+V SGL+V  TSWC+ +RGPLF SVF PL ++ V + ASL+LDEKL+LGS +GA LI+C
Sbjct: 267 GVVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASLMLDEKLYLGSAIGAVLIVC 326

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSP-----NEEIKELNDSRKGD 113
           GLY VLWGK  EMK+ +QLVP+ NT +E+E+I++ + S      ++++   N S+ G+
Sbjct: 327 GLYMVLWGKSKEMKRIAQLVPSKNT-QEAEAIQVVVMSTPMVDDHDKLHVDNLSKNGE 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513971|gb|AFK45047.1| unknown [Lotus japonicus]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SGL+V   S+CV +RGPLF S+F PL ++ VA+AA L+LDEKL+LGSVLGA LI+C
Sbjct: 161 GIVASGLVVIMISYCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVLGAGLIVC 220

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITS 98
           GLY VLWGK  EMKK++QL+P  NT K+ E  EI++ S
Sbjct: 221 GLYTVLWGKSKEMKKKTQLIPLENT-KQPEVTEIAVMS 257

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525918|ref|XP_003531568.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG++V  T+WC+ +RGPLF SVF PL +V VA+A SL+L+E L++GSV+GA LI+C
Sbjct: 270 GIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVC 329

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQ 114
           GLY VLWGK  EMK  +QLVP + T +E+E+IE+ + S +  I    D  K DQ
Sbjct: 330 GLYMVLWGKSKEMKNITQLVP-SETIREAEAIEVVVMSISTPI----DYEKCDQ 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557527|ref|XP_003547067.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 81/114 (71%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG++V  T+WC+ +RGPLF SVF PL +V VA+  SL+L+E L++GSV+GA LI+C
Sbjct: 267 GIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAITGSLMLNENLYVGSVVGAVLIVC 326

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQ 114
           GLY VLWGK  EMK  +QLVP + T +E+E+IE+ +   +  I    D  K DQ
Sbjct: 327 GLYMVLWGKSKEMKNITQLVP-SETIREAEAIEVVVMPMSTPI----DYEKCDQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528066|ref|XP_003532626.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 71/91 (78%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G+V SG++V   +WC+  RGPLFVSVF PL ++ V +AA L+L+EKL+LGSVLGA +I+C
Sbjct: 267 GMVASGVVVVIIAWCIKKRGPLFVSVFNPLQLLLVDIAAYLMLEEKLYLGSVLGAVIIVC 326

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESES 91
           GLY VLWG   E+KK+SQLVP  NT  ESE+
Sbjct: 327 GLYTVLWGTAQELKKKSQLVPLGNTRGESEN 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360291|gb|ABN08304.1| Integral membrane protein DUF6 containing protein [Medicago truncatula]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           GIV SG MV   SWCVH+RGPLF S F PL +V VA+A+  +L+E L+LGS++G+ LI+C
Sbjct: 141 GIVASGAMVVVISWCVHMRGPLFASAFNPLVLVIVALASCTMLNENLYLGSIIGSVLIVC 200

Query: 61  GLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDS 109
           GLYAV+WGK  EMKK +QLVP + +S E +++EI +    ++ +  N +
Sbjct: 201 GLYAVVWGKSKEMKKNNQLVP-SQSSNEFDTVEIVVRHVVDDKRNHNSN 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2199327	356	UMAMIT23 "Usually multiple aci	0.618	0.205	0.493	2e-15
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.720	0.221	0.443	7.4e-15
TAIR|locus:2032960	355	UMAMIT24 "Usually multiple aci	0.652	0.216	0.441	7.4e-14
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.686	0.197	0.395	1.1e-12
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.661	0.208	0.397	3.1e-12
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.627	0.206	0.418	4.6e-12
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.627	0.190	0.418	7.2e-12
TAIR|locus:2125167	365	UMAMIT29 "Usually multiple aci	0.610	0.197	0.430	7.9e-12
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.618	0.198	0.397	1e-11
TAIR|locus:2125172	365	UMAMIT31 "Usually multiple aci	0.661	0.213	0.397	1.3e-11

TAIR|locus:2199327 UMAMIT23 "Usually multiple acids move in and out Transporters 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/73 (49%), Positives = 48/73 (65%)

Query:     2 IVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMCG 61
             I+ SG++V   +WC+  RGPLFVSVF+P+         S +LDE LHLGS++G  +I+  
Sbjct:   253 ILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALVGSFLLDETLHLGSIIGTVIIVGA 312

Query:    62 LYAVLWGKGNEMK 74
             LY VLW K  EMK
Sbjct:   313 LYIVLWAKNKEMK 325

GO:0016020 "membrane" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 39/88 (44%), Positives = 54/88 (61%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             GI+ SGL+V   +WC++  GP+FV+VF PL          LIL ++L+ G ++GA  IM 
Sbjct:   279 GIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIML 338

Query:    61 GLYAVLWGKGNEMK---KQSQLVPAANT 85
             GLY VLWGK  E K   ++SQ  P + T
Sbjct:   339 GLYLVLWGKNEERKLALEESQQDPESLT 366

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2032960 UMAMIT24 "Usually multiple acids move in and out Transporters 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 34/77 (44%), Positives = 50/77 (64%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             GIV SG++V   +WC+  +GPLFV+VF+P+         S  L+E LHLGS++GA +++ 
Sbjct:   251 GIVVSGMVVPLVAWCIATKGPLFVTVFSPIRLVIVALIGSFALEEPLHLGSIIGAMIMVG 310

Query:    61 GLYAVLWGKGNEMKKQS 77
             G+Y V+W K  E K  S
Sbjct:   311 GVYLVVWCKMKEKKSAS 327

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/86 (39%), Positives = 50/86 (58%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             G V SG+  +   WC+   GP+FV+V+ P+         S+IL E+ +LG + GA LI+ 
Sbjct:   272 GFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIII 331

Query:    61 GLYAVLWGKGNE-----MKKQSQLVP 81
             GLY VLWGK  E     ++ +S +VP
Sbjct:   332 GLYLVLWGKSEEKRLGLLQAKSSMVP 357

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             G+V S L     SW +  +GPL+VSVF+PL           +L+EKL+ G+ +G+ L++ 
Sbjct:   258 GVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLEEKLYTGTFMGSALVVI 317

Query:    61 GLYAVLWGKGNEMKKQSQ 78
             GLY VLWGK  E+ ++ +
Sbjct:   318 GLYGVLWGKDREVSEKEE 335

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 31/74 (41%), Positives = 46/74 (62%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             G + +G+     SW +  RGP+F+S+FTPLS        +++L E + LGS++G  L++ 
Sbjct:   261 GFIVTGVAYYLQSWVIEKRGPVFLSMFTPLSLLFTLLSSAILLCEIISLGSIVGGLLLII 320

Query:    61 GLYAVLWGKGNEMK 74
             GLY VLWGK  E K
Sbjct:   321 GLYCVLWGKSREEK 334

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             GIV SG+      WC+   GP+FV+V+ P+         S+ L E+ +LG ++GA LI+ 
Sbjct:   273 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIA 332

Query:    61 GLYAVLWGKGNEMK 74
             GLY VL+GK  E K
Sbjct:   333 GLYFVLYGKSEERK 346

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2125167 UMAMIT29 "Usually multiple acids move in and out Transporters 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 31/72 (43%), Positives = 43/72 (59%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             GIVG  +    TSW + + G +FVS F+P+S         LIL   L+LGS+LG+ + + 
Sbjct:   259 GIVGQAMSTVVTSWSIKMTGAVFVSTFSPVSLVAATLFDFLILHSPLYLGSILGSVVTIT 318

Query:    61 GLYAVLWGKGNE 72
             GLY  LWG+ NE
Sbjct:   319 GLYVFLWGRKNE 330

GO:0016020 "membrane" evidence=IEA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/73 (39%), Positives = 46/73 (63%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             G+ GS +  T  +W + ++GPLFV++F PLS         + L + L++GS++GAT+I  
Sbjct:   255 GLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLIGATVITI 314

Query:    61 GLYAVLWGKGNEM 73
             G Y V+WGK  E+
Sbjct:   315 GFYTVMWGKAKEV 327

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2125172 UMAMIT31 "Usually multiple acids move in and out Transporters 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query:     1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIMC 60
             G V  G+    TSWC+  RGP+F S+FTP+          LIL  ++ LGSV+G+ +++ 
Sbjct:   256 GAVAQGICTVGTSWCIRKRGPIFTSIFTPVGLIFATLFDFLILHRQIFLGSVVGSGVVIF 315

Query:    61 GLYAVLWGKGNEMKKQSQ 78
             GLY  L GK   MK++ +
Sbjct:   316 GLYIFLLGKVRLMKEECE 333

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: N21L7 mtn21-like protein (376 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-14
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	4e-04
pfam00892	126	pfam00892, EamA, EamA-like transporter family	5e-04
PRK11453	299	PRK11453, PRK11453, O-acetylserine/cysteine export	0.003

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query: 13  SWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72
           SW V  +GPL++++F PLS++   V  ++ L++ L+LG ++G  LI  G YAV+WGK NE
Sbjct: 274 SWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333

Query: 73  MKKQ 76
            K Q
Sbjct: 334 EKDQ 337

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 31/69 (44%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G+  +GL      + + + G   V++ + L  V  A+   L+L E L    +LGA L++ 
Sbjct: 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVL 280

Query: 61  GLYAVLWGK 69
           G+       
Sbjct: 281 GVLLASLRA 289

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 1   GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC 60
           G+ G+ L      + +        SV T LS V   + + L+L EKL L  +LG  LI+ 
Sbjct: 60  GLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILL 119

Query: 61  GLYAVLW 67
           G+  +L 
Sbjct: 120 GVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|183142 PRK11453, PRK11453, O-acetylserine/cysteine export protein; Provisional

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 29  PLS----VVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68
           PLS    VV +A AA L+LDE+L     LGA LIM GLY  ++G
Sbjct: 246 PLSLLVPVVGLASAA-LLLDERLTGLQFLGAVLIMAGLYINVFG 288

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PLN00411	358	nodulin MtN21 family protein; Provisional	99.7
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.49
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.43
PRK11689	295	aromatic amino acid exporter; Provisional	99.41
PRK11272	292	putative DMT superfamily transporter inner membran	99.34
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.18
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.16
PRK15430	296	putative chloramphenical resistance permease RarD;	99.16
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.12
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.11
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.07
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.92
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.86
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.8
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.68
COG2510	140	Predicted membrane protein [Function unknown]	98.63
PRK15430	296	putative chloramphenical resistance permease RarD;	98.49
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.48
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.46
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.45
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.41
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.36
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.18
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.1
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.04
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.02
PLN00411	358	nodulin MtN21 family protein; Provisional	98.01
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.99
PRK11272	292	putative DMT superfamily transporter inner membran	97.91
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.89
COG2076	106	EmrE Membrane transporters of cations and cationic	97.79
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.73
PRK11431	105	multidrug efflux system protein; Provisional	97.7
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.69
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.68
PRK11689	295	aromatic amino acid exporter; Provisional	97.67
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.67
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.65
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.5
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.48
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.47
COG2962	293	RarD Predicted permeases [General function predict	97.26
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.17
COG2962	293	RarD Predicted permeases [General function predict	97.15
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.15
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.97
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.65
KOG1580	337	consensus UDP-galactose transporter related protei	96.51
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.11
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.7
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.25
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.13
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.98
KOG4510	346	consensus Permease of the drug/metabolite transpor	94.86
KOG2765	416	consensus Predicted membrane protein [Function unk	94.38
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	93.9
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	93.67
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.28
KOG1582	367	consensus UDP-galactose transporter related protei	92.93
PRK10532	293	threonine and homoserine efflux system; Provisiona	92.78
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	92.05
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	91.76
KOG1581	327	consensus UDP-galactose transporter related protei	91.71
PRK13499	345	rhamnose-proton symporter; Provisional	91.32
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	90.39
KOG3912	372	consensus Predicted integral membrane protein [Gen	90.39
KOG2765	416	consensus Predicted membrane protein [Function unk	88.66
COG3086	150	RseC Positive regulator of sigma E activity [Signa	87.85
PF04246	135	RseC_MucC: Positive regulator of sigma(E), RseC/Mu	87.44
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	86.69
PF11118	77	DUF2627: Protein of unknown function (DUF2627); In	85.04
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	84.58
KOG2922	335	consensus Uncharacterized conserved protein [Funct	84.47
PRK10862	154	SoxR reducing system protein RseC; Provisional	84.45
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	83.22
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	83.13
PRK13499	345	rhamnose-proton symporter; Provisional	81.98
KOG4831	125	consensus Unnamed protein [Function unknown]	81.7
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	81.61
PRK02237	109	hypothetical protein; Provisional	81.19
KOG1443	349	consensus Predicted integral membrane protein [Fun	80.5

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.70  E-value=3e-17  Score=135.46  Aligned_cols=73  Identities=40%  Similarity=0.822  Sum_probs=67.6

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhhhh
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQ   76 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~   76 (118)
                      ++.++|.+|+|++++.||+++|+|.+++|++++++|+++|||++++.+++|+++|+.|++++.|+++|+.+.+
T Consensus       265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~  337 (358)
T PLN00411        265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ  337 (358)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            3668999999999999999999999999999999999999999999999999999999999999777665533

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.49  E-value=4.6e-14  Score=111.78  Aligned_cols=74  Identities=16%  Similarity=0.106  Sum_probs=69.0

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK   74 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~   74 (118)
                      |+++|+++|.+|++++++.+|+++|.+.+++|++++++|++++||+++..+++|+++|++|+++..+..++|.|
T Consensus       215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~  288 (293)
T PRK10532        215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK  288 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999877655443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.43  E-value=2e-13  Score=108.29  Aligned_cols=70  Identities=29%  Similarity=0.276  Sum_probs=67.0

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      |+++|+++|.+|++++++.+|++++.+.+++|++++++|++++||++++.+++|+++|++|+++..|+++
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            4689999999999999999999999999999999999999999999999999999999999999988765

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.41  E-value=3.3e-13  Score=106.99  Aligned_cols=68  Identities=13%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      ++|+++|.+|++++++.+|+++|.+.+++|++++++|++++||++++.+++|+++|+.|+++..+..+
T Consensus       223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            46899999999999999999999999999999999999999999999999999999999999877554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.34  E-value=1.4e-12  Score=103.13  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN   71 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k   71 (118)
                      |+++|+++|.+|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+.+++
T Consensus       219 ~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        219 AVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999999998876543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.18  E-value=6.7e-11  Score=79.70  Aligned_cols=66  Identities=24%  Similarity=0.362  Sum_probs=62.7

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      |++++++++.+|++++++.+++.++.+.+++|++++++++++++|+++..+++|.++++.|++++.
T Consensus        60 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   60 GLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.16  E-value=3.6e-11  Score=94.47  Aligned_cols=63  Identities=21%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             eeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438            2 IVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA   64 (118)
Q Consensus         2 i~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l   64 (118)
                      .++|+++|.+|++++++.|+++++.+.+++|++++++|++++||+++..+++|+++|+.|+++
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            467899999999999999999999999999999999999999999999999999999999986

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.16  E-value=6.2e-11  Score=94.05  Aligned_cols=64  Identities=9%  Similarity=-0.006  Sum_probs=60.4

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      +|+++|.+|++++++.||+++|.+.+++|++++++||+++||++++.+++|+++|+.|+.+...
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999888777654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.12  E-value=1.5e-10  Score=83.97  Aligned_cols=71  Identities=23%  Similarity=0.221  Sum_probs=64.9

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHH--HhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASL--ILDEKLHLGSVLGATLIMCGLYAVLWGKGN   71 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l--~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k   71 (118)
                      |+++++++|.+|++++++.+++.+.-+..+.+++..++++.  ++||++++.+++|.++|+.|++++.+++++
T Consensus        54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            46789999999999999999999999999999989888885  899999999999999999999998876544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.11  E-value=3.9e-11  Score=94.79  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=60.0

Q ss_pred             hHHHHHHH----HHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438            5 SGLMVTTT----SWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM   73 (118)
Q Consensus         5 S~ia~~l~----~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~   73 (118)
                      +..++.+|    ++++++.||++++++.++.|++++++|++++||++++.+++|+++++.|+++.++.|.+++
T Consensus       227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~  299 (302)
T TIGR00817       227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP  299 (302)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence            33355544    4799999999999999999999999999999999999999999999999999987654433

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.07  E-value=1.5e-10  Score=88.35  Aligned_cols=62  Identities=23%  Similarity=0.360  Sum_probs=59.4

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHH
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGL   62 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV   62 (118)
                      |+++++++|.+|++++++.++.+++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus       198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            35678999999999999999999999999999999999999999999999999999999986

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.92  E-value=2.7e-09  Score=80.83  Aligned_cols=68  Identities=25%  Similarity=0.402  Sum_probs=64.6

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      |++++++++++|++++++.+++.++.+.++.|++++++++++++|+++..+++|+++++.|+.+...+
T Consensus       221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            35677899999999999999999999999999999999999999999999999999999999998876

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.86  E-value=3.8e-09  Score=86.43  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=63.0

Q ss_pred             eeehHHHHHHHHH----HHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            2 IVGSGLMVTTTSW----CVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         2 i~~S~ia~~l~~~----~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      +++++++|++||+    ++++++|...+++.++.|++++++|++++||++++.+++|+++++.|+++.++.
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            3568999999995    999999999999999999999999999999999999999999999999997754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.80  E-value=1.4e-08  Score=70.57  Aligned_cols=67  Identities=21%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN   71 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k   71 (118)
                      +...++.+|.+++++.++ .++....+.|++++++|+++++|+++...++|.+++++|+.+..+...+
T Consensus        44 ~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   44 GFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            345789999999999995 8889999999999999999999999999999999999999999886543

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.68  E-value=5e-08  Score=68.83  Aligned_cols=64  Identities=17%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      ++-++++++|.+++++.+.+.+.....+.+++++++|++++||++++.+++|.++|+.|+.+.-
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4557789999999999999999999999999999999999999999999999999999998754

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.63  E-value=2.7e-08  Score=73.53  Aligned_cols=64  Identities=25%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      .+++++..+|+++++...++++.-.--+.|+++++++++||+|+++..+++|..+|.+|..++.
T Consensus        75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            4678999999999999999999999999999999999999999999999999999999987654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.49  E-value=2.7e-07  Score=73.23  Aligned_cols=65  Identities=23%  Similarity=0.270  Sum_probs=60.5

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      ++.++.+.+++|++++.+++.+++..+..|++.+++++++++|+++..+++|.++.+.|+.+..+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999998754

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.48  E-value=1.6e-07  Score=76.22  Aligned_cols=73  Identities=12%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM   73 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~   73 (118)
                      |+++|++.|.+=..+++++++..-++.+.++|.++++.|+++|||.+++.|++|.++|+.+..=+.+..+|..
T Consensus       216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~  288 (292)
T COG5006         216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA  288 (292)
T ss_pred             HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence            4688999999999999999999999999999999999999999999999999999999999887777655443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.46  E-value=2.1e-07  Score=74.28  Aligned_cols=66  Identities=20%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             eeehHHHHHHHHHHHh-hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhH----hHHHHHHHHHHHHHhc
Q 037438            2 IVGSGLMVTTTSWCVH-VRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV----LGATLIMCGLYAVLWG   68 (118)
Q Consensus         2 i~~S~ia~~l~~~~i~-~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~i----iG~~LIl~GV~l~~~~   68 (118)
                      ++ ++++|.+|..+.+ +.+++.++....++|+++++++++++||..+..++    +|.++|+.|+.+....
T Consensus       219 i~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       219 LM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            45 7899999999999 99999999999999999999999999999999999    9999999999886543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.45  E-value=3.7e-07  Score=69.63  Aligned_cols=65  Identities=17%  Similarity=0.076  Sum_probs=60.5

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      ++..+.+.++++++++.++..+++...+.|++++++++++++|+++..+++|.++.+.|+.+...
T Consensus        55 ~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        55 LQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            45667888999999999999999999999999999999999999999999999999999998754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.41  E-value=6.1e-07  Score=70.48  Aligned_cols=65  Identities=23%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      +.++.+.+++++.++.+++.++.+.+..|++++++++++++|+++..+++|.++++.|+++..+.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            35577888899999999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=98.36  E-value=1.2e-06  Score=67.62  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      .++.+.++++++++.++..++...+..|++++++++++++|+++..+++|.++.+.|+.+...
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999999999999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.18  E-value=6.9e-06  Score=59.29  Aligned_cols=68  Identities=19%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             eehHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      ++-+++|+++.+++++++...+= ++.-+.-+.++++|+++++|++++.+++|.++|+.|+...+...+
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            34567899999999999887764 445688999999999999999999999999999999999876554

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.10  E-value=4.8e-06  Score=65.84  Aligned_cols=61  Identities=11%  Similarity=0.073  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            6 GLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         6 ~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      ++.+.++++++++.+++.+++...+.|++++++++++++|+++..+++|.++++.|+.+..
T Consensus        76 ~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        76 TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            5667899999999999999999999999999999999999999999999999999998754

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.04  E-value=8.9e-06  Score=61.54  Aligned_cols=70  Identities=26%  Similarity=0.347  Sum_probs=62.9

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHH-HHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAAS-LILDEKLHLGSVLGATLIMCGLYAVLWGKGNE   72 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~-l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~   72 (118)
                      ++....+.+|+.++++.++..++...+..|++.+++++ ++++|+++...++|.++.+.|++++.+.....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            45677888999999999999999999999999999997 77799999999999999999999988765443

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.02  E-value=2.4e-05  Score=55.52  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             eehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK   69 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~   69 (118)
                      ++-+++|+++..++++++...+ +++.-+.-+.++++|+++++|++++.+++|.++|+.|+.+.+...
T Consensus        38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3456789999999999887766 455668889999999999999999999999999999999987654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.01  E-value=1.1e-05  Score=66.97  Aligned_cols=62  Identities=18%  Similarity=0.315  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH------hCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLI------LDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~------LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      +.+.++++++++.+|+.+|+..+..|++++++++++      ++|+++..+++|.++-++|+++....
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            355589999999999999999999999999999999      69999999999999999999987653

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.99  E-value=1.3e-05  Score=63.60  Aligned_cols=61  Identities=11%  Similarity=0.139  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhh-cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            8 MVTTTSWCVHV-RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         8 a~~l~~~~i~~-~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      .+.+++.+.++ .++..+++..++.|+++.++++++++|+++..+++|.++.+.|+++..+.
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            34456677776 57789999999999999999999999999999999999999999987754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.91  E-value=2.2e-05  Score=62.12  Aligned_cols=62  Identities=10%  Similarity=0.004  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHH-hhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            6 GLMVTTTSWCV-HVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         6 ~ia~~l~~~~i-~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      ++.+.+++++. ++.++..+++..++.|+++++++++ ++|+++..+++|.++.+.|+++..+.
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            45677888888 8999999999999999999999986 69999999999999999999998654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.89  E-value=2.4e-05  Score=64.14  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            8 MVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         8 a~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      .+...++++++.+++++++...+.|++++++++++++|+++...++|.++++.|+++...
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            455677999999999999999999999999999999999999999999999999998653

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.79  E-value=9e-05  Score=52.79  Aligned_cols=67  Identities=27%  Similarity=0.412  Sum_probs=58.6

Q ss_pred             eehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK   69 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~   69 (118)
                      ++-+++|++..+++|+++-..+ +++.-+..+.+++.|+++++|++++..++|.++|++|+...++..
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            3457889999999999886654 778888899999999999999999999999999999999887653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.73  E-value=0.00011  Score=52.18  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             ehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            4 GSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      +-+++|++...++++++...+ +++.-+.-+.+++.|+++++|++++.+++|.++|+.|+...+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            446789999999999887665 667778889999999999999999999999999999998864

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.70  E-value=0.00016  Score=51.07  Aligned_cols=65  Identities=17%  Similarity=0.278  Sum_probs=56.9

Q ss_pred             ehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            4 GSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      +-+++|++...++++++...+ +++.-+.-+.+++.|+++++|++++.+++|.++|+.|+...+..
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            456789999999999887665 67777899999999999999999999999999999999987543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.69  E-value=7.1e-05  Score=62.11  Aligned_cols=70  Identities=13%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM   73 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~   73 (118)
                      +..+-|.+....++..+|+...+-.....++++++++++.|+++++..++|.++|+.|+.+.....++..
T Consensus       242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~  311 (334)
T PF06027_consen  242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE  311 (334)
T ss_pred             HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence            3455677778999999999999999999999999999999999999999999999999999887655443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00688 rarD rarD protein

Probab=97.68  E-value=3.9e-05  Score=59.20  Aligned_cols=39  Identities=5%  Similarity=0.024  Sum_probs=37.0

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLI   42 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~   42 (118)
                      .|+++|.+|++++++.+|++++.+.|++|++++++|+++
T Consensus       217 ~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       217 ITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            388999999999999999999999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.67  E-value=9.5e-05  Score=58.66  Aligned_cols=59  Identities=20%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             HHHHHHHh----hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438           10 TTTSWCVH----VRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus        10 ~l~~~~i~----~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      .+++++++    ..++..+++..++.|++++++++++++|+++..+++|.++-++|+++....
T Consensus        76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            33445554    457788899999999999999999999999999999999999999987653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.67  E-value=9.1e-05  Score=52.40  Aligned_cols=58  Identities=16%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            9 VTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         9 ~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      ....++++++.+|...++...+-.++..++|++++||+++..+++|.++.+.|+++..
T Consensus        95 n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   95 NLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            3445689999999999999999999999999999999999999999999999988754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.65  E-value=0.00015  Score=57.77  Aligned_cols=69  Identities=14%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE   72 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~   72 (118)
                      +..++....++.+++.||...++...+--++++++++++.|+++++.+++|.++++.|+.+-.+.++|+
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            445666677789999999999999999999999999999999999999999999999999988876654

; GO: 0055085 transmembrane transport

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.50  E-value=0.00027  Score=48.16  Aligned_cols=55  Identities=29%  Similarity=0.367  Sum_probs=35.2

Q ss_pred             ehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHH
Q 037438            4 GSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI   58 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LI   58 (118)
                      +=+++|+++.+++++.+.+.+ +++.-+..+..+++|++++||++++.+++|..+|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            346889999999999998888 6777899999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.48  E-value=6.6e-05  Score=61.96  Aligned_cols=63  Identities=17%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438            7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK   69 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~   69 (118)
                      .+..+.+++.++++-+-+.+..+..|+++++++|++|+|+.+....+|..+.+.||.+..+..
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            356678899999999999999999999999999999999999999999999999999977654

>TIGR00803 nst UDP-galactose transporter

Probab=97.47  E-value=2.7e-05  Score=59.21  Aligned_cols=60  Identities=20%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA   64 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l   64 (118)
                      .++...+-.|++++.+++..+....+.++++++++++++|++++..+++|+.+++.|+++
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            445556678999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.26  E-value=0.00048  Score=56.60  Aligned_cols=64  Identities=20%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      +...+|.|++.+--...+|+=+++.|++-+++|.+||+|+++..|++..++-.+||..-.|...
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            4567889999999999999999999999999999999999999999999999999998777544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.17  E-value=0.0012  Score=52.18  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438           10 TTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE   72 (118)
Q Consensus        10 ~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~   72 (118)
                      .+++.++++++|+.--+...+..++++++++++|+.+++..||++..++++|+.+++......
T Consensus        32 ~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   32 NLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            456689999999999999999999999999999999999999999999999999988776544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.15  E-value=0.0012  Score=54.22  Aligned_cols=67  Identities=9%  Similarity=-0.028  Sum_probs=63.5

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      .|+++..+|..+-+++.-+..+...|++|..-.++|++++||+++..+++.-++|-+|+.+..+..-
T Consensus       220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999999999999999999999999999999999887654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.15  E-value=0.00069  Score=54.16  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhcCccchhhhhh-hHHHHHHHHHHHHhCccchhhh----HhHHHHHHHHHHHHHhc
Q 037438            7 LMVTTTSWCVHVRGPLFVSVFTP-LSVVAVAVAASLILDEKLHLGS----VLGATLIMCGLYAVLWG   68 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~~~-L~PV~a~llg~l~LgE~lt~~~----iiG~~LIl~GV~l~~~~   68 (118)
                      ++...|..++++.|.+.+-.+.+ +.|++.++++.+++||+.+..+    ++|.++++.|++++...
T Consensus        71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            34488999999999999988777 8999999999999999999999    99999999999887444

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.97  E-value=0.0017  Score=51.72  Aligned_cols=71  Identities=15%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK   74 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~   74 (118)
                      +..++-.+.++++++++...-.++-...|++.+++++++++++.+..++++.+++.+|+.++...+.+..+
T Consensus        73 ~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   73 LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            34567788999999999999999999999999999999999999999999999999999998876554444

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.65  E-value=0.0039  Score=51.82  Aligned_cols=65  Identities=12%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            6 GLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         6 ~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      +.|-++++.+.++...+-+.+.....-++++++++++|+++.++.|++|.++.+.|+.++.+...
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            34667888999999999999999999999999999999999999999999999999999877643

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.0095  Score=48.87  Aligned_cols=64  Identities=23%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438            3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL   66 (118)
Q Consensus         3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~   66 (118)
                      ++|+++.++-+.-+...||-..|+....--.|+++.++++++.+++..||+|..+++.|+..=.
T Consensus       249 i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  249 IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            4678888888899999999999999999999999999999999999999999999999988744

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.11  E-value=0.0085  Score=43.04  Aligned_cols=59  Identities=17%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438            7 LMVTTTSWCVHVRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV   65 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~-~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~   65 (118)
                      .+-.+|++.+++.+-+.+.-. +.+.=+|+++.|+++.+|..+...++|+++|++|+.++
T Consensus        53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            356678888888887776655 57888999999988888888999999999999998763

Many members are annotated as potential transmembrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.70  E-value=0.0079  Score=49.01  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      -+++..+...+....+++.++-+..+.-++.++++..+|+|+++...++|.++++.|..+.-.
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            345556666777777888787777888889999999999999999999999999999987554

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.25  E-value=0.064  Score=45.19  Aligned_cols=60  Identities=18%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             HHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438           11 TTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus        11 l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      +++.+..+++|+.-...+.+--+.++++++++|+++++..||...++.+.|+.++++...
T Consensus       108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen  108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence            455778889999999999999999999999999999999999999999999999995443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.13  E-value=0.0031  Score=52.24  Aligned_cols=64  Identities=20%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             HHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438           11 TTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK   74 (118)
Q Consensus        11 l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~   74 (118)
                      ..++++++.+|..-++...+=-++.++.||+++++++++.+..|.++-+.|+++..+.+.++++
T Consensus       251 s~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  251 SAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3458899999999999998888899999999999999999999999999999999988766554

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.98  E-value=0.084  Score=42.95  Aligned_cols=68  Identities=15%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhHh----HHHHHHHHHHHHHhcccchhh
Q 037438            7 LMVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVL----GATLIMCGLYAVLWGKGNEMK   74 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt~~~ii----G~~LIl~GV~l~~~~~~k~~~   74 (118)
                      ++-..|+++.+++|.+++- +..-++-+.++++|++++||.-+..+++    +.++|+.|+++..++.+++.+
T Consensus        57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            4567788999999988764 4446677778999999999987766654    778999999998887665554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=94.86  E-value=0.025  Score=47.02  Aligned_cols=63  Identities=14%  Similarity=0.031  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      ..+...+-+.++++=-|..+|+..+..-++|.++-++|+|+..+++++.|+++|+.....+-.
T Consensus       263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence            345667778889888899999999999999999999999999999999999999988766543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.38  E-value=0.056  Score=46.37  Aligned_cols=73  Identities=19%  Similarity=0.205  Sum_probs=65.3

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM   73 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~   73 (118)
                      |+++|+++=++|.|++-...|..+.+-+.+.--.|++...++=|-.+++..++|.+.|+.|.++++.......
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~  396 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK  396 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence            3568899999999999999999999999888888999999999999999999999999999999987654433

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=93.90  E-value=0.053  Score=38.86  Aligned_cols=30  Identities=20%  Similarity=0.239  Sum_probs=27.8

Q ss_pred             HHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438           36 AVAASLILDEKLHLGSVLGATLIMCGLYAV   65 (118)
Q Consensus        36 ~llg~l~LgE~lt~~~iiG~~LIl~GV~l~   65 (118)
                      +.+++++++|++++.++.|.++++.+++++
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            778899999999999999999999998875

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.67  E-value=0.14  Score=36.74  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=29.6

Q ss_pred             HHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438           36 AVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus        36 ~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      +.|+++.|+|++.+.++.|+++++.|+++..+
T Consensus        84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            67899999999999999999999999998754

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.28  E-value=0.051  Score=43.70  Aligned_cols=63  Identities=13%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438            8 MVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus         8 a~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      +-++|..+++++.|+.++....-.-.|..+++|+.|++++....++.+++-+.|+.+..+...
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            457899999999999999999999999999999999999999999999999999877555443

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.93  E-value=0.35  Score=40.50  Aligned_cols=57  Identities=16%  Similarity=0.276  Sum_probs=51.9

Q ss_pred             HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438           14 WCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus        14 ~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      -.++.-||..+++....--.++.+++++++..++|..+.-|+.+|+.|+++-..+++
T Consensus       279 alI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  279 ALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            456778999999999999999999999999999999999999999999999887763

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=92.78  E-value=0.22  Score=39.41  Aligned_cols=57  Identities=18%  Similarity=0.064  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW   67 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~   67 (118)
                      .++.+.++++++++.++..++...+..|+++++++.    |+..  ...+.++.++|+++..+
T Consensus        81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence            355677889999999999999999999999998873    5554  34566777888887653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=92.05  E-value=0.29  Score=39.90  Aligned_cols=57  Identities=21%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhh----hHhHHHHHHHHHH
Q 037438            7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLG----SVLGATLIMCGLY   63 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~----~iiG~~LIl~GV~   63 (118)
                      ++-..|..+.++.|.+.+-.+.-+..+++++.|.++|||.-+..    .++|.++|+.|..
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            45566788899999999999999999999999999999998866    4567777777654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=91.76  E-value=0.44  Score=40.24  Aligned_cols=63  Identities=17%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438           10 TTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE   72 (118)
Q Consensus        10 ~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~   72 (118)
                      .+-.+.+|+.+-..=+....+.-+++++.++.+.+-+++...++|..+++..+++....+.++
T Consensus       265 Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  265 LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            445567777777777777888999999999999999999999999999999999988555554

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.71  E-value=0.13  Score=43.02  Aligned_cols=66  Identities=11%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK   69 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~   69 (118)
                      |.+++...-++-+++-||..-.+.+..=-+++++++.+..|.++.+-|++|..+++.|+++-..-+
T Consensus       250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k  315 (327)
T KOG1581|consen  250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK  315 (327)
T ss_pred             hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence            345555666778899999999999999999999999999999999999999999999999865433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=91.32  E-value=0.65  Score=39.00  Aligned_cols=68  Identities=10%  Similarity=0.043  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccc-------hhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438            7 LMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKL-------HLGSVLGATLIMCGLYAVLWGKGNEMK   74 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~l-------t~~~iiG~~LIl~GV~l~~~~~~k~~~   74 (118)
                      ++-..|..++++.|-+.+ ++-.-+.-+++++++.+++||--       ....++|.++++.|+.+..+...++.+
T Consensus        85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~  160 (345)
T PRK13499         85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER  160 (345)
T ss_pred             hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            455677788899987765 45566778889999999998743       345788999999999999985544433

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=90.39  E-value=0.22  Score=41.53  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH--hcccc
Q 037438           19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL--WGKGN   71 (118)
Q Consensus        19 ~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~--~~~~k   71 (118)
                      ..+-.+++...+=-.+..+++.+.+..++++++++|+++++.|-++..  |.+.|
T Consensus       266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            345566777778888999999999999999999999999999988754  55544

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=90.39  E-value=0.36  Score=40.53  Aligned_cols=64  Identities=11%  Similarity=0.052  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~   68 (118)
                      -+.+..+++.++....|+---+.=--.-+|+.+|+.-+|+.+++..+|+|...+.+|+..+-..
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3456677777777766665555555678999999999999999999999999999999886643

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=88.66  E-value=0.27  Score=42.27  Aligned_cols=66  Identities=15%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438            7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE   72 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~   72 (118)
                      +|-+.++-+++....+-..+.....-+|+..+|.+|.+|++++.-+++.++=+.|+.++..+..++
T Consensus       171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            355677788888888888888899999999999999999999999999999999999988775544

>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]

Probab=87.85  E-value=0.91  Score=34.26  Aligned_cols=27  Identities=4%  Similarity=0.071  Sum_probs=20.6

Q ss_pred             HhhcCccchhhhhhhHHHHHHHHHHHH
Q 037438           16 VHVRGPLFVSVFTPLSVVAVAVAASLI   42 (118)
Q Consensus        16 i~~~gp~~aS~~~~L~PV~a~llg~l~   42 (118)
                      +......++|+..|+.|+++.+++.++
T Consensus        69 i~EkslL~sA~LvYi~PL~~l~v~~~L   95 (150)
T COG3086          69 IEEKSLLKSALLVYIFPLVGLFLGAIL   95 (150)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566788999999999997776554

>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC

Probab=87.44  E-value=0.95  Score=32.32  Aligned_cols=28  Identities=14%  Similarity=0.134  Sum_probs=21.1

Q ss_pred             CccchhhhhhhHHHHHHHHHHHHhCccch
Q 037438           20 GPLFVSVFTPLSVVAVAVAASLILDEKLH   48 (118)
Q Consensus        20 gp~~aS~~~~L~PV~a~llg~l~LgE~lt   48 (118)
                      ...+++++.|+.|+++.+++.++ +..+.
T Consensus        66 ~~~~aa~l~Y~lPll~li~g~~l-~~~~~   93 (135)
T PF04246_consen   66 SLLKAAFLVYLLPLLALIAGAVL-GSYLG   93 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            44578999999999999888665 34433

The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=86.69  E-value=0.4  Score=39.21  Aligned_cols=54  Identities=22%  Similarity=0.365  Sum_probs=46.1

Q ss_pred             ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHH
Q 037438            4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATL   57 (118)
Q Consensus         4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~L   57 (118)
                      |++.--++-.||++..+.+.-|+.-.+.-.-.++.|.++++|+.+...+....+
T Consensus       233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sill  286 (309)
T COG5070         233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILL  286 (309)
T ss_pred             HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHH
Confidence            344445566799999999999999999999999999999999999999887654

>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function

Probab=85.04  E-value=2.1  Score=29.06  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             chhhhhhhHHHHHHHHHHHHhCccch-----------hhhHhHHHHHHHHHHHHH-hcccchhhhhccc
Q 037438           23 FVSVFTPLSVVAVAVAASLILDEKLH-----------LGSVLGATLIMCGLYAVL-WGKGNEMKKQSQL   79 (118)
Q Consensus        23 ~aS~~~~L~PV~a~llg~l~LgE~lt-----------~~~iiG~~LIl~GV~l~~-~~~~k~~~~~~~~   79 (118)
                      ..|+...+.|.+.+..|+-++.+.+.           ...+.|.++...|+++.- |--.|++|+++.+
T Consensus         4 ~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~   72 (77)
T PF11118_consen    4 FIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQ   72 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhheeeccccccc
Confidence            35778888999998888777665443           234678888889988754 4445555555544

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=84.58  E-value=0.14  Score=41.94  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhhcCccchhh-hhhhHHHHHHHHHHHHhCccchhhhHh----HHHHHHHHHHHHHhccc
Q 037438            7 LMVTTTSWCVHVRGPLFVSV-FTPLSVVAVAVAASLILDEKLHLGSVL----GATLIMCGLYAVLWGKG   70 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~-~~~L~PV~a~llg~l~LgE~lt~~~ii----G~~LIl~GV~l~~~~~~   70 (118)
                      ++...|.++++..|.+++.= ..-.+-+-+.++|++++||--+..+++    ..++|+.|+++..|+++
T Consensus        71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            34556778888888887753 344666778999999999999988764    55888999998777654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.47  E-value=0.13  Score=43.12  Aligned_cols=55  Identities=31%  Similarity=0.405  Sum_probs=43.0

Q ss_pred             cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438           19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM   73 (118)
Q Consensus        19 ~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~   73 (118)
                      .+++.++-.-.+.-++.++++..+|+|.+++...+|+++.+.|-++.-...++++
T Consensus        88 APasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~  142 (335)
T KOG2922|consen   88 APASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ  142 (335)
T ss_pred             chHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence            3555555566677888999999999999999999999999999776554444433

>PRK10862 SoxR reducing system protein RseC; Provisional

Probab=84.45  E-value=1.6  Score=32.41  Aligned_cols=23  Identities=4%  Similarity=0.027  Sum_probs=18.3

Q ss_pred             CccchhhhhhhHHHHHHHHHHHH
Q 037438           20 GPLFVSVFTPLSVVAVAVAASLI   42 (118)
Q Consensus        20 gp~~aS~~~~L~PV~a~llg~l~   42 (118)
                      ...++++..|+.|+++.++|.++
T Consensus        73 ~llkaa~lvYllPLl~li~ga~l   95 (154)
T PRK10862         73 SLLRSALLVYMTPLVGLFLGAAL   95 (154)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568899999999998887554

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=83.22  E-value=0.81  Score=35.40  Aligned_cols=62  Identities=16%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccch-hhhHhHH-HHHHHHHHHHH
Q 037438            5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLH-LGSVLGA-TLIMCGLYAVL   66 (118)
Q Consensus         5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt-~~~iiG~-~LIl~GV~l~~   66 (118)
                      ..++|.+...-+....+...+.+..+.|..+..+|..+-+=-.. +.+++|+ ++++.|+++..
T Consensus        17 vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~   80 (206)
T TIGR02840        17 VGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY   80 (206)
T ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            34455433322233455666777778888888888776542223 3556665 56677888765

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=83.13  E-value=4.1  Score=29.53  Aligned_cols=59  Identities=14%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhcCccchhhhhhhHHHHH-HHHHHH----HhCccchhhhHhHHHHHHHHHHH
Q 037438            6 GLMVTTTSWCVHVRGPLFVSVFTPLSVVAV-AVAASL----ILDEKLHLGSVLGATLIMCGLYA   64 (118)
Q Consensus         6 ~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a-~llg~l----~LgE~lt~~~iiG~~LIl~GV~l   64 (118)
                      ++-....++.+.++|++.+.......-+++ .++..+    .-..++++..++|.++++.|+++
T Consensus        75 ~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   75 VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            444566778899999998887766655444 455554    34589999999999999999864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=81.98  E-value=5.6  Score=33.44  Aligned_cols=61  Identities=18%  Similarity=0.075  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhhcCccchhh---hh-hhHHHHHHHHHHHHhCccch------hhhHhHHHHHHHHHHHHHhc
Q 037438            7 LMVTTTSWCVHVRGPLFVSV---FT-PLSVVAVAVAASLILDEKLH------LGSVLGATLIMCGLYAVLWG   68 (118)
Q Consensus         7 ia~~l~~~~i~~~gp~~aS~---~~-~L~PV~a~llg~l~LgE~lt------~~~iiG~~LIl~GV~l~~~~   68 (118)
                      +++..|.++-.+.|...+..   +. -+.-+++.+.|. +|+|.-+      ...++|.++++.|..+...+
T Consensus       272 ~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        272 LQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            45667777788887665544   33 445588888888 5999999      67799999999999887654

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=81.70  E-value=2.4  Score=30.86  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438            8 MVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV   65 (118)
Q Consensus         8 a~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~   65 (118)
                      +-.+|++-+++.+-+.+. ..+.+.-.|++++|..+-.|.-.-..++|..+|++|+.++
T Consensus        65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            346788888888877655 3455677888999977655555566788999999999875

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=81.61  E-value=6.9  Score=29.04  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=14.7

Q ss_pred             HhHHHHHHHHHHHHHhcccchh
Q 037438           52 VLGATLIMCGLYAVLWGKGNEM   73 (118)
Q Consensus        52 iiG~~LIl~GV~l~~~~~~k~~   73 (118)
                      .+|.+++..|++.....++...
T Consensus        47 Alg~vL~~~g~~~~~~~~~~~~   68 (191)
T PF04156_consen   47 ALGVVLLSLGLLCLLSKRPVQS   68 (191)
T ss_pred             HHHHHHHHHHHHHHHHcccccc
Confidence            4577888888877766554443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK02237 hypothetical protein; Provisional

Probab=81.19  E-value=8.8  Score=27.58  Aligned_cols=39  Identities=10%  Similarity=0.175  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438           32 VVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG   70 (118)
Q Consensus        32 PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~   70 (118)
                      -+.+.+.+|++=|.+++.+.++|+++.+.|+.+..+..|
T Consensus        70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            355568899999999999999999999999998876654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=80.50  E-value=2.8  Score=35.44  Aligned_cols=51  Identities=22%  Similarity=0.288  Sum_probs=44.8

Q ss_pred             HHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438           15 CVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV   65 (118)
Q Consensus        15 ~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~   65 (118)
                      .+.+.+....|++.-.-=+.+.++|.+++++.++..-+.|..+.+.|+.+-
T Consensus       263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            455677777888888888889999999999999999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.44
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.0

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.44  E-value=9.1e-14  Score=100.73  Aligned_cols=69  Identities=12%  Similarity=0.117  Sum_probs=53.3

Q ss_pred             CeeehHHHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438            1 GIVGSGLMVTTTSWCVHVRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK   69 (118)
Q Consensus         1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~-~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~   69 (118)
                      |+++++++|++|++++++.+++++..+ ..+.|++++++|++++||++++.+++|.++|+.|+++..+.+
T Consensus        36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999888 899999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.00  E-value=6.9e-10  Score=76.81  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             eeehHHHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438            2 IVGSGLMVTTTSWCVHVRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK   69 (118)
Q Consensus         2 i~~S~ia~~l~~~~i~~~gp~~aS~~-~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~   69 (118)
                      +++.+++|++|.+++++.+.+.+... ..+.|++++++|++++||++++.+++|.++|+.|+++.....
T Consensus        37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45678999999999999999999766 799999999999999999999999999999999999987653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00