Citrus Sinensis ID: 037454

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC
cEEEEEEcccccccEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEcccEEccccccccccccccEEEEEcccccccccccccccccccccccccEEcccccEEEEEEEccccEEEEEEEccccccccccccccEEEEEEccccccccccccccccccc
cEEEEEEEccccccEEEEccccccHHHHHHHHHHccccccccccEEEcccccccccccccccEEEEEEEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEEccccccccccccEEEcEEEEccccHHHHHHccEEEEEEEccccccccccccccccccccccccEEcccccEEEEEEEEccccEEEEEccHHccccccccccHEEEEEEccccccccccccccccccc
MVLSLIIllkpgipimfgecfnadpEAIISQAlqrgggpnvsdanttnglpgrsincsaclgrVTIIEadavhvkpfetktlhsfppdrqqkflskpnatffttarpyvtgqgtsdnstkpilparkdtsfptsftnkLGTLaishvpvnapktltcnsspegpngtmfqnrsilraeshplqlhgFNFFVVeqgsgnfdpnkhpskfnlfypierntewcalggwvaprflahspvvcmvqvpppasthklgiedgmdcivfdgklqnqkllpppadlpkc
MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFetktlhsfppdrqqkflskpnatffttarpyvtgqgtsdnstkpilparkdtsfPTSFTNKLGTLAISHVPVNAPKTltcnsspegpnGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKlqnqkllpppadlpkc
MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC
**LSLIILLKPGIPIMFGECFNADPEAIISQAL****************LPGRSINCSACLGRVTIIEADAVHVKPFETKTLH***************ATFFTTARPYV*************************FTNKLGTLAISHVPVN************************LRAESHPLQLHGFNFFVVEQGSGNFD***HPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKL***************
MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQ***LLPPPADLPKC
MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC
MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLSLIILLKPGIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q5N9W4547 Putative laccase-5 OS=Ory yes no 0.943 0.486 0.359 2e-45
Q9FJD5577 Laccase-17 OS=Arabidopsis yes no 0.496 0.242 0.438 4e-31
Q10ND7578 Laccase-10 OS=Oryza sativ no no 0.397 0.193 0.530 1e-26
Q5N9X2579 Laccase-4 OS=Oryza sativa no no 0.638 0.310 0.401 5e-26
O81081573 Laccase-2 OS=Arabidopsis no no 0.507 0.249 0.388 7e-26
Q0DHL2574 Laccase-12/13 OS=Oryza sa no no 0.932 0.458 0.295 2e-25
Q8RYM9562 Laccase-2 OS=Oryza sativa no no 0.397 0.199 0.469 3e-21
Q1PDH6566 Laccase-16 OS=Arabidopsis no no 0.397 0.197 0.460 5e-21
Q9LMS3581 Laccase-1 OS=Arabidopsis no no 0.397 0.192 0.486 2e-20
Q0DHL5540 Putative laccase-11 OS=Or no no 0.382 0.2 0.453 2e-20
>sp|Q5N9W4|LAC5_ORYSJ Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1 Back     alignment and function desciption
 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 172/378 (45%), Gaps = 112/378 (29%)

Query: 14  PIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACL--------GR-- 63
           PIMFGE FNAD EA+I+QALQ G GPN+SDA T NGLPG + NCS+          GR  
Sbjct: 173 PIMFGEWFNADTEAVINQALQTGAGPNISDAYTFNGLPGPTYNCSSKDTYKVKVQPGRTY 232

Query: 64  ---------------------VTIIEADAVHVKPFETKTLHSFPPDRQQKFLS---KPNA 99
                                +T++EADA +VKPF  KTL   P       L+    P +
Sbjct: 233 LLRLINSALNDELFFGIANHTLTVVEADANYVKPFTAKTLVISPGQTMNLLLTTAPNPGS 292

Query: 100 TFFTTA-RPYVTGQGTSDNSTKPIL----PAR-----------------KDTSFPTSFTN 137
             +  A  PY   QGT DN+T   +    P R                  DT+   +F++
Sbjct: 293 PVYAMAIAPYTNTQGTFDNTTAVAVLEYAPTRASATGNNNLPLPPLPRYNDTNAVANFSS 352

Query: 138 KLGTLAISHVPVNAPKTLT---------------CNSSPEGPNGTMF------------- 169
           K  +LA +  P   P+ +                 N + +GPNGT F             
Sbjct: 353 KFRSLATARYPARVPRAVDRHVLFTVGLGTDPCPSNQTCQGPNGTKFAASINNNSFVRPR 412

Query: 170 -------------------------QNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKH 204
                                    Q  SI  AESHPL +HGFNFFVV QG GN+DP   
Sbjct: 413 VALLEAHCQRRVVPLAFNTSVELVLQGTSIQGAESHPLHMHGFNFFVVGQGFGNYDPVND 472

Query: 205 PSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFD 264
           P+ +NL  P+ERNT     GGWVA RFLA +P V ++        H L     M  +V D
Sbjct: 473 PANYNLVDPVERNTVSVPTGGWVAVRFLADNPGVWLMHC--HFDVH-LSWGLSMAWLVND 529

Query: 265 GKLQNQKLLPPPADLPKC 282
           G L +QK+LPPP+DLPKC
Sbjct: 530 GPLPSQKMLPPPSDLPKC 547
Lignin degradation and detoxification of lignin-derived products.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 0EC: .EC: 3EC: .EC: 2
>sp|Q9FJD5|LAC17_ARATH Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1 Back     alignment and function description
>sp|Q10ND7|LAC10_ORYSJ Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1 Back     alignment and function description
>sp|Q5N9X2|LAC4_ORYSJ Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1 Back     alignment and function description
>sp|O81081|LAC2_ARATH Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHL2|LAC12_ORYSJ Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1 Back     alignment and function description
>sp|Q8RYM9|LAC2_ORYSJ Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1 Back     alignment and function description
>sp|Q1PDH6|LAC16_ARATH Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2 Back     alignment and function description
>sp|Q9LMS3|LAC1_ARATH Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHL5|LAC11_ORYSJ Putative laccase-11 OS=Oryza sativa subsp. japonica GN=LAC11 PE=5 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
297720571 547 Os01g0844050 [Oryza sativa Japonica Grou 0.943 0.486 0.359 1e-43
224104399 576 predicted protein [Populus trichocarpa] 0.946 0.463 0.340 2e-34
224057692 581 predicted protein [Populus trichocarpa] 0.656 0.318 0.414 8e-34
224128342 581 predicted protein [Populus trichocarpa] 0.656 0.318 0.385 3e-32
357505317 560 Laccase [Medicago truncatula] gi|3554979 0.620 0.312 0.421 5e-32
357505505 581 Laccase [Medicago truncatula] gi|3583450 0.620 0.301 0.402 6e-32
359479021 585 PREDICTED: laccase-17-like [Vitis vinife 0.659 0.317 0.398 2e-31
147789066 559 hypothetical protein VITISV_005802 [Viti 0.659 0.332 0.398 2e-31
255582055 576 laccase, putative [Ricinus communis] gi| 0.613 0.300 0.408 4e-31
218189353 577 hypothetical protein OsI_04394 [Oryza sa 0.946 0.462 0.301 7e-31
>gi|297720571|ref|NP_001172647.1| Os01g0844050 [Oryza sativa Japonica Group] gi|75321216|sp|Q5N9W4.1|LAC5_ORYSJ RecName: Full=Putative laccase-5; AltName: Full=Benzenediol:oxygen oxidoreductase 5; AltName: Full=Diphenol oxidase 5; AltName: Full=Urishiol oxidase 5; Flags: Precursor gi|56784248|dbj|BAD81743.1| putative laccase LAC5-6 [Oryza sativa Japonica Group] gi|125572611|gb|EAZ14126.1| hypothetical protein OsJ_04048 [Oryza sativa Japonica Group] gi|255673866|dbj|BAH91377.1| Os01g0844050 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 172/378 (45%), Gaps = 112/378 (29%)

Query: 14  PIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCSACL--------GR-- 63
           PIMFGE FNAD EA+I+QALQ G GPN+SDA T NGLPG + NCS+          GR  
Sbjct: 173 PIMFGEWFNADTEAVINQALQTGAGPNISDAYTFNGLPGPTYNCSSKDTYKVKVQPGRTY 232

Query: 64  ---------------------VTIIEADAVHVKPFETKTLHSFPPDRQQKFLS---KPNA 99
                                +T++EADA +VKPF  KTL   P       L+    P +
Sbjct: 233 LLRLINSALNDELFFGIANHTLTVVEADANYVKPFTAKTLVISPGQTMNLLLTTAPNPGS 292

Query: 100 TFFTTA-RPYVTGQGTSDNSTKPIL----PAR-----------------KDTSFPTSFTN 137
             +  A  PY   QGT DN+T   +    P R                  DT+   +F++
Sbjct: 293 PVYAMAIAPYTNTQGTFDNTTAVAVLEYAPTRASATGNNNLPLPPLPRYNDTNAVANFSS 352

Query: 138 KLGTLAISHVPVNAPKTLT---------------CNSSPEGPNGTMF------------- 169
           K  +LA +  P   P+ +                 N + +GPNGT F             
Sbjct: 353 KFRSLATARYPARVPRAVDRHVLFTVGLGTDPCPSNQTCQGPNGTKFAASINNNSFVRPR 412

Query: 170 -------------------------QNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKH 204
                                    Q  SI  AESHPL +HGFNFFVV QG GN+DP   
Sbjct: 413 VALLEAHCQRRVVPLAFNTSVELVLQGTSIQGAESHPLHMHGFNFFVVGQGFGNYDPVND 472

Query: 205 PSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFD 264
           P+ +NL  P+ERNT     GGWVA RFLA +P V ++        H L     M  +V D
Sbjct: 473 PANYNLVDPVERNTVSVPTGGWVAVRFLADNPGVWLMHC--HFDVH-LSWGLSMAWLVND 529

Query: 265 GKLQNQKLLPPPADLPKC 282
           G L +QK+LPPP+DLPKC
Sbjct: 530 GPLPSQKMLPPPSDLPKC 547

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224104399|ref|XP_002313424.1| predicted protein [Populus trichocarpa] gi|222849832|gb|EEE87379.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224057692|ref|XP_002299296.1| predicted protein [Populus trichocarpa] gi|222846554|gb|EEE84101.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128342|ref|XP_002329138.1| predicted protein [Populus trichocarpa] gi|222869807|gb|EEF06938.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357505317|ref|XP_003622947.1| Laccase [Medicago truncatula] gi|355497962|gb|AES79165.1| Laccase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357505505|ref|XP_003623041.1| Laccase [Medicago truncatula] gi|358345007|ref|XP_003636576.1| Laccase [Medicago truncatula] gi|355498056|gb|AES79259.1| Laccase [Medicago truncatula] gi|355502511|gb|AES83714.1| Laccase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359479021|ref|XP_003632204.1| PREDICTED: laccase-17-like [Vitis vinifera] gi|297746168|emb|CBI16224.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789066|emb|CAN60348.1| hypothetical protein VITISV_005802 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582055|ref|XP_002531824.1| laccase, putative [Ricinus communis] gi|223528520|gb|EEF30544.1| laccase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|218189353|gb|EEC71780.1| hypothetical protein OsI_04394 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2168128577 LAC17 "laccase 17" [Arabidopsi 0.397 0.194 0.582 8.3e-67
TAIR|locus:2066117573 LAC2 "laccase 2" [Arabidopsis 0.393 0.193 0.508 6.9e-58
TAIR|locus:2042842558 IRX12 "IRREGULAR XYLEM 12" [Ar 0.397 0.200 0.452 5e-36
TAIR|locus:2194110581 LAC1 "laccase 1" [Arabidopsis 0.397 0.192 0.486 1.9e-35
TAIR|locus:2150139558 LAC10 "laccase 10" [Arabidopsi 0.397 0.200 0.443 3.1e-35
TAIR|locus:2143563557 LAC11 "laccase 11" [Arabidopsi 0.397 0.201 0.452 3.5e-35
TAIR|locus:2083604567 LAC7 "laccase 7" [Arabidopsis 0.563 0.280 0.376 7.3e-33
TAIR|locus:2154518566 LAC16 "laccase 16" [Arabidopsi 0.524 0.261 0.410 1.2e-32
TAIR|locus:2182895569 LAC13 "laccase 13" [Arabidopsi 0.393 0.195 0.405 9.9e-31
TAIR|locus:2063109580 LAC5 "laccase 5" [Arabidopsis 0.397 0.193 0.365 8.7e-29
TAIR|locus:2168128 LAC17 "laccase 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 311 (114.5 bits), Expect = 8.3e-67, Sum P(4) = 8.3e-67
 Identities = 67/115 (58%), Positives = 74/115 (64%)

Query:   168 MFQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWV 227
             + Q+ SIL AESHPL LHGFNFFVV QG GNFDPNK P  FNL  PIERNT     GGW 
Sbjct:   466 VMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPRNFNLVDPIERNTVGVPSGGWA 525

Query:   228 APRFLAHSPVVCMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC 282
             A RFLA +P V  +       T   G+   M  +V DG   +QKLLPPPADLPKC
Sbjct:   526 AIRFLADNPGVWFMHCHLEVHT-SWGLR--MAWLVLDGDKPDQKLLPPPADLPKC 577
GO:0005507 "copper ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA;IMP
GO:0046274 "lignin catabolic process" evidence=IEA
GO:0048046 "apoplast" evidence=IEA
GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009698 "phenylpropanoid metabolic process" evidence=IMP
GO:0009809 "lignin biosynthetic process" evidence=IMP
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2066117 LAC2 "laccase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042842 IRX12 "IRREGULAR XYLEM 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194110 LAC1 "laccase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150139 LAC10 "laccase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143563 LAC11 "laccase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083604 LAC7 "laccase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154518 LAC16 "laccase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182895 LAC13 "laccase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063109 LAC5 "laccase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
4327505
laccase precursor protein, putative; Lignin degradation and detoxification of lignin-derived products (By similarity) (547 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
4325317
cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed (169 aa)
      • 0.544

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
TIGR03389539 TIGR03389, laccase, laccase, plant 2e-31
TIGR03389539 TIGR03389, laccase, laccase, plant 4e-30
TIGR03388541 TIGR03388, ascorbase, L-ascorbate oxidase, plant t 8e-11
PLN02604566 PLN02604, PLN02604, oxidoreductase 5e-10
pfam07731135 pfam07731, Cu-oxidase_2, Multicopper oxidase 6e-09
PLN02191574 PLN02191, PLN02191, L-ascorbate oxidase 3e-07
pfam00394146 pfam00394, Cu-oxidase, Multicopper oxidase 1e-05
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant Back     alignment and domain information 
 Score =  122 bits (307), Expect = 2e-31
 Identities = 95/287 (33%), Positives = 123/287 (42%), Gaps = 88/287 (30%)

Query: 5   LIILLKPG-----------IPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGR 53
           ++IL KPG           +PI+ GE +NAD EA+I+QA Q GG PNVSDA T NG PG 
Sbjct: 118 IVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGP 177

Query: 54  SINCSA-------------CLGRV------------------TIIEADAVHVKPFETKTL 82
             NCS+              L R+                  T++E DA + KPF+TKT+
Sbjct: 178 LYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTI 237

Query: 83  HSFPPDRQQKFL--SKPNATFFTTARPYVTGQGTSDNST-----------------KPIL 123
              P       L   +    +F  ARPY+   G  DN+T                  P L
Sbjct: 238 VIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTL 297

Query: 124 PARKDTSFPTSFTNKLGTLAISHVPVNAPKT----------LTCNSSP----EGPNGTMF 169
           PA  DT+  T+F+NKL +L  +  P N P T          L  +  P    +GPNGT F
Sbjct: 298 PAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRF 357

Query: 170 ----QNRSILRAESHPLQLHGFNFFVVEQGSGNFD---PNKHPSKFN 209
                N S +   +  LQ H F        SG F    P   P+KFN
Sbjct: 358 AASMNNISFVMPTTALLQAHYFGI------SGVFTTDFPANPPTKFN 398

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. Length = 539
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant Back     alignment and domain information
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type Back     alignment and domain information
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase Back     alignment and domain information
>gnl|CDD|219541 pfam07731, Cu-oxidase_2, Multicopper oxidase Back     alignment and domain information
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase Back     alignment and domain information
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
TIGR03389539 laccase laccase, plant. Members of this protein fa 100.0
PLN02792536 oxidoreductase 100.0
PLN02991543 oxidoreductase 100.0
PLN00044596 multi-copper oxidase-related protein; Provisional 100.0
PLN02835539 oxidoreductase 100.0
KOG1263563 consensus Multicopper oxidases [Secondary metaboli 100.0
PLN02168545 copper ion binding / pectinesterase 100.0
PLN02354552 copper ion binding / oxidoreductase 100.0
TIGR03388541 ascorbase L-ascorbate oxidase, plant type. Members 100.0
PLN02191574 L-ascorbate oxidase 100.0
PLN02604566 oxidoreductase 100.0
TIGR03390538 ascorbOXfungal L-ascorbate oxidase, fungal type. T 100.0
TIGR01480587 copper_res_A copper-resistance protein, CopA famil 100.0
PRK10965523 multicopper oxidase; Provisional 99.98
PRK10883471 FtsI repressor; Provisional 99.98
COG2132451 SufI Putative multicopper oxidases [Secondary meta 99.94
PF07731138 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR01 99.88
PF00394159 Cu-oxidase: Multicopper oxidase; InterPro: IPR0011 99.85
TIGR02376311 Cu_nitrite_red nitrite reductase, copper-containin 99.48
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 97.7
PLN02604 566 oxidoreductase 97.28
TIGR03388 541 ascorbase L-ascorbate oxidase, plant type. Members 95.88
PLN02835 539 oxidoreductase 95.69
PF07732117 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01 95.17
PLN02991 543 oxidoreductase 94.92
PF00394159 Cu-oxidase: Multicopper oxidase; InterPro: IPR0011 94.39
PLN02191 574 L-ascorbate oxidase 92.14
TIGR03389 539 laccase laccase, plant. Members of this protein fa 91.66
COG4454158 Uncharacterized copper-binding protein [Inorganic 87.15
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 86.31
PF07731138 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR01 86.17
PLN02168 545 copper ion binding / pectinesterase 84.51
TIGR01480 587 copper_res_A copper-resistance protein, CopA famil 82.33
PLN02792 536 oxidoreductase 80.82
>TIGR03389 laccase laccase, plant Back     alignment and domain information 
Probab=100.00  E-value=1.4e-54  Score=425.66  Aligned_cols=275  Identities=43%  Similarity=0.688  Sum_probs=201.7

Q ss_pred             CEEeEEEEcCC---------C--CcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCccccc-----------
Q 037454            1 MVLSLIILLKP---------G--IPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCS-----------   58 (282)
Q Consensus         1 l~GplIV~p~~---------~--~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~~ncs-----------   58 (282)
                      |+|+|||+++.         +  ++|+|+||||++..+++..+...|..+.++|++||||+..+.++|+           
T Consensus       114 l~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~  193 (539)
T TIGR03389       114 VYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEP  193 (539)
T ss_pred             ceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECC
Confidence            79999999532         1  7999999999998888777666665566889999999964333331           


Q ss_pred             --------------------CCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEeeC--------
Q 037454           59 --------------------ACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARPY--------  108 (282)
Q Consensus        59 --------------------~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~~--------  108 (282)
                                          .++|+|+|||+||.+++|+++++|.|++||||||+|+ ++ +|+||||+.+.        
T Consensus       194 G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~  273 (539)
T TIGR03389       194 GKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFD  273 (539)
T ss_pred             CCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCC
Confidence                                2569999999999999999999999999999999999 88 89999998642        


Q ss_pred             ---ceeEEecCCCCC---CC---CCCCCCCCc------------------------ccc----ccccc------------
Q 037454          109 ---VTGQGTSDNSTK---PI---LPARKDTSF------------------------PTS----FTNKL------------  139 (282)
Q Consensus       109 ---~~~~~~y~~~~~---p~---~p~~~~~~~------------------------~~~----~~~~~------------  139 (282)
                         ..|+|+|+++..   |.   .|..++...                        ...    +...+            
T Consensus       274 ~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (539)
T TIGR03389       274 NTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPN  353 (539)
T ss_pred             CcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCC
Confidence               367899976421   21   111111000                        000    00000            


Q ss_pred             ----c-cccccCCC-CCCCee----------------------eecC--------------CcccCCCCcE----EEcCC
Q 037454          140 ----G-TLAISHVP-VNAPKT----------------------LTCN--------------SSPEGPNGTM----FQNRS  173 (282)
Q Consensus       140 ----~-~~~~~~~~-~~~p~~----------------------~~~n--------------~~~~~~~g~~----~~n~~  173 (282)
                          . .+++..|. +..|++                      ...+              ..+..+.|++    |+|..
T Consensus       354 ~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~  433 (539)
T TIGR03389       354 GTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTS  433 (539)
T ss_pred             CcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCC
Confidence                0 11121110 112211                      0000              0012233443    55653


Q ss_pred             CCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCC
Q 037454          174 ILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPAST  249 (282)
Q Consensus       174 ~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~  249 (282)
                      ......||||||||+||||++|.|.|+...+...+|+.||++|||++|+++||++|||+|||||+    |||+||+    
T Consensus       434 ~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~----  509 (539)
T TIGR03389       434 ILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHT----  509 (539)
T ss_pred             cCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchh----
Confidence            22355999999999999999999999865555578999999999999999999999999999999    9999999    


Q ss_pred             ccCCccceeEEEEeCCccccccCCCCCCCCCCC
Q 037454          250 HKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC  282 (282)
Q Consensus       250 ~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~~~~c  282 (282)
                       ++||  +++|+|+++++..++++++|..+++|
T Consensus       510 -~~Gm--~~~~~~~~~~~~~~~~~~~p~~~~~c  539 (539)
T TIGR03389       510 -TWGL--KMAFLVDNGKGPNQSLLPPPSDLPSC  539 (539)
T ss_pred             -hhcc--eEEEEEccCCCCccccCCCCccCCCC
Confidence             9999  99999999888778899999999999

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
>PLN02792 oxidoreductase Back     alignment and domain information
>PLN02991 oxidoreductase Back     alignment and domain information
>PLN00044 multi-copper oxidase-related protein; Provisional Back     alignment and domain information
>PLN02835 oxidoreductase Back     alignment and domain information
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02168 copper ion binding / pectinesterase Back     alignment and domain information
>PLN02354 copper ion binding / oxidoreductase Back     alignment and domain information
>TIGR03388 ascorbase L-ascorbate oxidase, plant type Back     alignment and domain information
>PLN02191 L-ascorbate oxidase Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type Back     alignment and domain information
>TIGR01480 copper_res_A copper-resistance protein, CopA family Back     alignment and domain information
>PRK10965 multicopper oxidase; Provisional Back     alignment and domain information
>PRK10883 FtsI repressor; Provisional Back     alignment and domain information
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>TIGR03388 ascorbase L-ascorbate oxidase, plant type Back     alignment and domain information
>PLN02835 oxidoreductase Back     alignment and domain information
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PLN02991 oxidoreductase Back     alignment and domain information
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PLN02191 L-ascorbate oxidase Back     alignment and domain information
>TIGR03389 laccase laccase, plant Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PLN02168 copper ion binding / pectinesterase Back     alignment and domain information
>TIGR01480 copper_res_A copper-resistance protein, CopA family Back     alignment and domain information
>PLN02792 oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1aoz_A552 Refined Crystal Structure Of Ascorbate Oxidase At 1 1e-05
3v9e_A580 Structure Of The L513m Mutant Of The Laccase From B 2e-04
3sqr_A580 Crystal Structure Of Laccase From Botrytis Aclada A 2e-04
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolution Length = 552 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 167 TMFQNRSILR---AESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCAL 223
            + QN ++++   +E+HP  LHG +F+V+  G G F   +  S  NL  P  RNT     
Sbjct: 429 VILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEE-SSLNLKNPPLRNTVVIFP 487
Query: 224 GGWVAPRFLAHSPVVC 239
            GW A RF+A +P V 
Sbjct: 488 YGWTAIRFVADNPGVW 503
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada Length = 580 Back     alignment and structure
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67 A Resolution Length = 580 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
2q9o_A559 Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct 1e-25
3sqr_A580 Laccase; multicopper oxidase, glycosylation, oxido 8e-21
1zpu_A534 Iron transport multicopper oxidase FET3; ferroxida 1e-20
1v10_A521 Laccase; multicopper blue oxidase, oxidase; 1.7A { 5e-20
3pxl_A499 Laccase; 4-copper protein, metal-binding, oxidored 6e-19
3t6v_A495 Laccase; beta barrel, oxidoreductase; HET: CBS; 2. 1e-18
1aoz_A552 Ascorbate oxidase; oxidoreductase(oxygen acceptor) 2e-16
1aoz_A552 Ascorbate oxidase; oxidoreductase(oxygen acceptor) 7e-09
1hfu_A503 Laccase 1; oxidoreductase, blue multi-copper oxida 6e-14
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A* Length = 559 Back     alignment and structure
 Score =  104 bits (262), Expect = 1e-25
 Identities = 56/383 (14%), Positives = 94/383 (24%), Gaps = 128/383 (33%)

Query: 14  PIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPG--------------------- 52
                + +    + ++         P  SD    NG                        
Sbjct: 169 VFPITDYYYRAADDLVHFTQ--NNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHR 226

Query: 53  -RSINCSACLG---------RVTIIEADAVHVKPFETKTLHSFP-------------PD- 88
            R +N ++             +T+I AD V V      +L                 PD 
Sbjct: 227 LRILN-TSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDN 285

Query: 89  ---RQQKFLSKPNATFF-------------------TTARPYVTGQGTSDNSTKPILP-- 124
                                                   P V  Q       +P++P  
Sbjct: 286 YWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRS 345

Query: 125 -------ARKDTSFPTSFTNKLGTL------AIS-HVPVNAPKT---LTCNSSPEGPNGT 167
                   R D + P +       L          +V    P     LT N+S    +  
Sbjct: 346 VPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNI 405

Query: 168 M-------------FQNRSILRAESHPLQLHGFNFFVVEQGSG---------NFDPNKHP 205
           +               +     +  HP+ LHG +F V+ +             FDP    
Sbjct: 406 VQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDL 465

Query: 206 SKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCI 261
           ++ N   P  R+T     GGW+   F   +P      C +        H   +  G+  +
Sbjct: 466 ARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAW------H---VSGGLS-V 515

Query: 262 VF---DGKLQNQKLLPPPADLPK 281
            F      L+ +       D  +
Sbjct: 516 DFLERPADLRQRISQEDEDDFNR 538
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada} Length = 580 Back     alignment and structure
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} Length = 534 Back     alignment and structure
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Length = 521 Back     alignment and structure
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A* Length = 499 Back     alignment and structure
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A* Length = 495 Back     alignment and structure
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Length = 552 Back     alignment and structure
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Length = 552 Back     alignment and structure
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A* Length = 503 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
3sqr_A580 Laccase; multicopper oxidase, glycosylation, oxido 100.0
1aoz_A552 Ascorbate oxidase; oxidoreductase(oxygen acceptor) 100.0
1zpu_A534 Iron transport multicopper oxidase FET3; ferroxida 100.0
2q9o_A559 Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct 100.0
3pxl_A499 Laccase; 4-copper protein, metal-binding, oxidored 100.0
3t6v_A495 Laccase; beta barrel, oxidoreductase; HET: CBS; 2. 100.0
1v10_A521 Laccase; multicopper blue oxidase, oxidase; 1.7A { 100.0
1hfu_A503 Laccase 1; oxidoreductase, blue multi-copper oxida 100.0
2xu9_A439 Laccase; oxidoreductase, multicopper oxidases; 1.5 100.0
3abg_A534 Bilirubin oxidase; cleavage on PAIR of basic resid 100.0
2uxt_A451 Protein SUFI, SUFI; oxidoreductase, periplasmic, c 100.0
2wsd_A513 Spore coat protein A; oxidoreductase, multi-copper 100.0
3aw5_A448 Multicopper oxidase; beta barrel, oxidoreductase; 100.0
3gyr_A612 PHS, phenoxazinone synthase; metalloprotein, lacca 100.0
3zx1_A481 Oxidoreductase, putative; laccase, metallo-oxidase 100.0
2g23_A612 PHS, phenoxazinone synthase; copper, metalloprotei 100.0
3od3_A488 Blue copper oxidase CUEO; multicopper oxidase, Cu( 100.0
2j5w_A1065 Ceruloplasmin, ferroxidase; oxidoreductase, plasma 99.79
2dv6_A447 Nitrite reductase; electron transfer, reduction, d 99.76
2zwn_A339 Two-domain type laccase; muticopper oxidase, oxido 99.74
3g5w_A318 Multicopper oxidase type 1; two domain, laccase, n 99.67
3gdc_A288 Multicopper oxidase; beta sandwich, plasmid, oxido 99.65
3cg8_A343 Laccase; oxidoreductase, multicopper blue protein; 99.63
3kw8_A276 Laccase, putative copper oxidase; two-domain lacca 99.54
3t9w_A299 Small laccase, multi-copper oxidase; two-domain co 99.49
1kbv_A327 ANIA, major outer membrane protein PAN 1; ANIA[NO2 99.45
3tas_A313 Small laccase, multi-copper oxidase; two-domain la 99.42
2zwn_A339 Two-domain type laccase; muticopper oxidase, oxido 99.41
1sdd_A306 Coagulation factor V; copper-binding protein, cofa 99.35
3g5w_A318 Multicopper oxidase type 1; two domain, laccase, n 99.31
1sdd_B 647 Coagulation factor V; copper-binding protein, cofa 99.3
2zoo_A442 Probable nitrite reductase; electron transfer, ele 99.29
1oe1_A336 Dissimilatory copper-containing nitrite reductase; 99.27
2j5w_A 1065 Ceruloplasmin, ferroxidase; oxidoreductase, plasma 99.19
2r7e_B 770 Coagulation factor VIII; ceruloplasmin fold, cuppe 99.15
1mzy_A333 Copper-containing nitrite reductase; mutant M182T, 99.15
2r7e_A 742 Coagulation factor VIII; ceruloplasmin fold, cuppe 99.03
2bw4_A340 Copper-containing nitrite reductase; oxidoreductas 99.0
2r7e_A742 Coagulation factor VIII; ceruloplasmin fold, cuppe 98.95
2dv6_A447 Nitrite reductase; electron transfer, reduction, d 98.89
1kbv_A327 ANIA, major outer membrane protein PAN 1; ANIA[NO2 98.61
1sdd_B 647 Coagulation factor V; copper-binding protein, cofa 98.56
3gdc_A288 Multicopper oxidase; beta sandwich, plasmid, oxido 98.54
2bw4_A340 Copper-containing nitrite reductase; oxidoreductas 98.51
3tas_A313 Small laccase, multi-copper oxidase; two-domain la 98.3
1mzy_A333 Copper-containing nitrite reductase; mutant M182T, 98.22
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.08
2zoo_A 442 Probable nitrite reductase; electron transfer, ele 98.05
1sdd_A306 Coagulation factor V; copper-binding protein, cofa 97.99
3kw8_A276 Laccase, putative copper oxidase; two-domain lacca 97.91
3t9w_A299 Small laccase, multi-copper oxidase; two-domain co 97.78
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 97.78
1oe1_A336 Dissimilatory copper-containing nitrite reductase; 97.72
3cg8_A343 Laccase; oxidoreductase, multicopper blue protein; 97.66
2r7e_B 770 Coagulation factor VIII; ceruloplasmin fold, cuppe 97.35
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 97.24
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 96.47
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 96.26
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 96.24
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 96.13
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 96.0
1byp_A99 Protein (plastocyanin); electron transfer, photosy 95.59
1aoz_A 552 Ascorbate oxidase; oxidoreductase(oxygen acceptor) 93.51
2xu9_A 439 Laccase; oxidoreductase, multicopper oxidases; 1.5 93.13
2q9o_A 559 Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct 92.88
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 92.61
1hfu_A 503 Laccase 1; oxidoreductase, blue multi-copper oxida 91.56
1v10_A 521 Laccase; multicopper blue oxidase, oxidase; 1.7A { 91.33
1zpu_A 534 Iron transport multicopper oxidase FET3; ferroxida 90.93
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 90.35
3pxl_A 499 Laccase; 4-copper protein, metal-binding, oxidored 89.22
3sqr_A 580 Laccase; multicopper oxidase, glycosylation, oxido 88.97
3t6v_A 495 Laccase; beta barrel, oxidoreductase; HET: CBS; 2. 88.83
2cal_A154 Rusticyanin; iron respiratory electron transport c 88.38
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 87.23
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 87.17
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 86.93
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 86.35
2uxt_A 451 Protein SUFI, SUFI; oxidoreductase, periplasmic, c 84.42
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada} Back     alignment and structure
Probab=100.00  E-value=2e-49  Score=389.92  Aligned_cols=258  Identities=22%  Similarity=0.272  Sum_probs=189.8

Q ss_pred             CEEeEEEEcCCC------C-cEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCc------ccc----------
Q 037454            1 MVLSLIILLKPG------I-PIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRS------INC----------   57 (282)
Q Consensus         1 l~GplIV~p~~~------~-~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~------~nc----------   57 (282)
                      |+|+|||+++..      . +|+|+|||+++..++....+..+  ++++|++||||++.+.      .+|          
T Consensus       179 L~G~lIV~~p~~~~yD~d~~~l~l~Dw~~~~~~~~~~~~~~~~--~~~~d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~  256 (580)
T 3sqr_A          179 LFGPLIINGPATADYDEDVGVIFLQDWAHESVFEIWDTARLGA--PPALENTLMNGTNTFDCSASTDPNCVGGGKKFELT  256 (580)
T ss_dssp             CEEEEEEECCCSSCCSEEEEEEEEEEECSSCHHHHHHHHTTSC--CCCBSEEEETTBCCCCCTTCCCTTBCCCCCCCEEE
T ss_pred             CEEEEEeeCcccCCCCccceEEEEEEEecCCHHHHHHHHhccC--CCCCceEEECCcccCCCccccccccccCCCceeEE
Confidence            799999995542      3 99999999999988877665433  5689999999997521      011          


Q ss_pred             ----------------------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEeeC-----
Q 037454           58 ----------------------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARPY-----  108 (282)
Q Consensus        58 ----------------------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~~-----  108 (282)
                                            +.++|+|+|||+||.+++|+++++|.|++||||||+|+ ++ +|+||||+.++     
T Consensus       257 v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa~DG~~v~P~~~~~l~i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~  336 (580)
T 3sqr_A          257 FVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCST  336 (580)
T ss_dssp             CCTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESSEEECTTCEEEEEEECCSCSSEEEEECCCCTTTSC
T ss_pred             EcCCCEEEEEEEeccCCceeeEEeCCceEEEEEeCCccCCceEeeEEEEccceEEEEEEEeCCCCCeEEEEEecccccCc
Confidence                                  12469999999999999999999999999999999999 88 79999998763     


Q ss_pred             ------ceeEEecCCCC--CCCCCCCCCCCccccc-ccccc---------------------------cccccCCC--CC
Q 037454          109 ------VTGQGTSDNST--KPILPARKDTSFPTSF-TNKLG---------------------------TLAISHVP--VN  150 (282)
Q Consensus       109 ------~~~~~~y~~~~--~p~~p~~~~~~~~~~~-~~~~~---------------------------~~~~~~~~--~~  150 (282)
                            ..|+++|+++.  .|..+.++........ ...+.                           ++++..|.  ..
T Consensus       337 ~~~~~~~~aiL~Y~~~~~~~P~~~~~~~~~~~~~~~~~~L~P~~~~~~~~~~~~~~~l~~~~~~~~~w~iN~~s~~~~~~  416 (580)
T 3sqr_A          337 NNEAANATGILRYDSSSIANPTSVGTTPRGTCEDEPVASLVPHLALDVGGYSLVDEQVSSAFTNYFTWTINSSSLLLDWS  416 (580)
T ss_dssp             BTTGGGCEEEEESSTTCCCCCCCCCCCCCCCSCCSCGGGCCBSSCCBCCSEEEEEEEEEEEESSSEEEEETTBCCCCCTT
T ss_pred             cCCCCceEEEEEECCCCCCCCCCCCCCccchhhcccccccccCCCCCCCCccceEEEEEeccCCceeEEECCEecccCCC
Confidence                  25899997653  2333333211000000 00010                           12333331  23


Q ss_pred             CCeeeec---CCc-------ccC----CCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCC
Q 037454          151 APKTLTC---NSS-------PEG----PNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFY  212 (282)
Q Consensus       151 ~p~~~~~---n~~-------~~~----~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~  212 (282)
                      .|.++..   +..       +..    +.|++    |+|.+. ....||||||||+|+||++|.|.|+++.+...+|+.|
T Consensus       417 ~P~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~VeiVi~n~~~-~~~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~n  495 (580)
T 3sqr_A          417 SPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTG-FGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVN  495 (580)
T ss_dssp             SCHHHHHHTTCCCCCGGGCEEEECC----CCEEEEEEEECSS-SCCCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBS
T ss_pred             CCchhhhhcCCccCCCCcceeecccccCCCcEEEEEEeCCCc-cccceeeEecCceEEEEecCCCccCccccccccccCC
Confidence            3432210   001       111    34664    677632 1579999999999999999999999876667899999


Q ss_pred             CCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCccc
Q 037454          213 PIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKLQ  268 (282)
Q Consensus       213 p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~~  268 (282)
                      |++|||+.|+++||++|||+|||||+    |||+||+     ++||  +++|+|+++++.
T Consensus       496 P~~rDTv~v~~~g~~~irf~adNPG~W~~HCHi~~H~-----~~Gm--~~~~~e~~~~i~  548 (580)
T 3sqr_A          496 PPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHA-----SEGL--AMQFVESQSSIA  548 (580)
T ss_dssp             CCEESEEEECTTSEEEEEEESCSCEEEEEEECSHHHH-----HTTC--EEEEEESGGGCC
T ss_pred             CceeeEEEeCCCceEEEEEEcCCCeeeEEEECcHHHh-----hCCC--cEEEEECHHHHh
Confidence            99999999999999999999999999    9999999     9999  999999887754
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Back     alignment and structure
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A* Back     alignment and structure
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A* Back     alignment and structure
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A* Back     alignment and structure
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Back     alignment and structure
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A* Back     alignment and structure
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A Back     alignment and structure
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A* Back     alignment and structure
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A Back     alignment and structure
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A Back     alignment and structure
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum} Back     alignment and structure
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus} Back     alignment and structure
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp} Back     alignment and structure
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ... Back     alignment and structure
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} Back     alignment and structure
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea} Back     alignment and structure
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Back     alignment and structure
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor} Back     alignment and structure
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A* Back     alignment and structure
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP} Back     alignment and structure
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Back     alignment and structure
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A* Back     alignment and structure
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} Back     alignment and structure
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 Back     alignment and structure
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea} Back     alignment and structure
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Back     alignment and structure
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis} Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Back     alignment and structure
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Back     alignment and structure
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Back     alignment and structure
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ... Back     alignment and structure
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Back     alignment and structure
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Back     alignment and structure
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Back     alignment and structure
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ... Back     alignment and structure
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A* Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis} Back     alignment and structure
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 Back     alignment and structure
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A* Back     alignment and structure
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP} Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Back     alignment and structure
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor} Back     alignment and structure
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Back     alignment and structure
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A Back     alignment and structure
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A* Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A* Back     alignment and structure
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Back     alignment and structure
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A* Back     alignment and structure
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada} Back     alignment and structure
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A* Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1aoza3214 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (C 2e-07
d2q9oa3216 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyce 1e-06
d1v10a2168 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus 5e-05
d1gska3154 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Ba 9e-05
d1gyca2170 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, 0.002
d1aoza2209 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (C 0.002
d2q9oa2181 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyce 0.003
d1hfua2172 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Copr 0.004
>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Length = 214 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 147 VPVNAPKTLTCNSSPEGPNGT----MFQNRSILR---AESHPLQLHGFNFFVVEQGSGNF 199
            P    KT   N   +   G     + QN ++++   +E+HP  LHG +F+V+  G G F
Sbjct: 67  TPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKF 126

Query: 200 DPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVVCMVQVPPPASTHKLGIED-GM 258
              +  S  NL  P  RNT      GW A RF+A +P V           H       GM
Sbjct: 127 SAEE-ESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFH------CHIEPHLHMGM 179

Query: 259 DCIVFDGKLQNQKLLPPPADLPKC 282
             +  +G    +K+   P     C
Sbjct: 180 GVVFAEG---VEKVGRIPTKALAC 200
>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId: 204285]} Length = 216 Back     information, alignment and structure
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId: 219653]} Length = 168 Back     information, alignment and structure
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]} Length = 154 Back     information, alignment and structure
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Length = 170 Back     information, alignment and structure
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Length = 209 Back     information, alignment and structure
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId: 204285]} Length = 181 Back     information, alignment and structure
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Length = 172 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1aoza3214 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 99.94
d2q9oa3216 Laccase {Melanocarpus albomyces [TaxId: 204285]} 99.93
d1v10a3190 Laccase {Rigidoporus lignosus [TaxId: 219653]} 99.91
d2q9oa2181 Laccase {Melanocarpus albomyces [TaxId: 204285]} 99.9
d1hfua3200 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 99.9
d1v10a2168 Laccase {Rigidoporus lignosus [TaxId: 219653]} 99.9
d1gyca3199 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 99.9
d1aoza2209 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 99.87
d1hfua2172 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 99.87
d1gyca2170 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 99.86
d1gska3154 Spore coat protein A, CotA {Bacillus subtilis [Tax 99.86
d1kv7a3181 multi-copper oxidase CueO {Escherichia coli [TaxId 99.75
d2j5wa5149 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 99.64
d1kv7a2165 multi-copper oxidase CueO {Escherichia coli [TaxId 99.52
d2j5wa2145 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1sddb2139 Coagulation factor V {Cow (Bos taurus) [TaxId: 991 99.48
d1gska2174 Spore coat protein A, CotA {Bacillus subtilis [Tax 99.48
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1sdda2116 Coagulation factor V {Cow (Bos taurus) [TaxId: 991 99.42
d1kbva2151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 99.41
d2bw4a2173 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 99.16
d1oe1a2177 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 99.04
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 98.84
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 98.3
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 97.92
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 97.61
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 97.45
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 97.45
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 97.35
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 97.3
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 97.13
d1hfua1131 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 97.02
d1kv7a1140 multi-copper oxidase CueO {Escherichia coli [TaxId 96.83
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 96.5
d1kbva2151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 96.49
d2j5wa1192 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 96.24
d1v10a1136 Laccase {Rigidoporus lignosus [TaxId: 219653]} 95.7
d1v10a2168 Laccase {Rigidoporus lignosus [TaxId: 219653]} 94.55
d1aoza2209 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 94.55
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 94.52
d2q9oa2181 Laccase {Melanocarpus albomyces [TaxId: 204285]} 93.54
d1hfua2172 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 92.38
d1gyca2170 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 90.89
d1sdda1180 Coagulation factor V {Cow (Bos taurus) [TaxId: 991 89.59
d1sddb2139 Coagulation factor V {Cow (Bos taurus) [TaxId: 991 88.97
d2j5wa5149 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 88.58
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 87.59
d2j5wa2145 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 87.26
d2bw4a2173 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 86.94
d1mzya2178 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 84.08
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 81.44
>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=99.94  E-value=6.5e-28  Score=207.54  Aligned_cols=109  Identities=32%  Similarity=0.490  Sum_probs=92.4

Q ss_pred             ccCCCCcE----EEcCCC---CCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEc
Q 037454          161 PEGPNGTM----FQNRSI---LRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLA  233 (282)
Q Consensus       161 ~~~~~g~~----~~n~~~---~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a  233 (282)
                      +..+.|++    |+|.+.   .....||||||||+||||++|.|.|+.. ....+|+.+|++|||+.|+++||++|||+|
T Consensus        81 ~~~~~g~~veivl~n~~~~~~~~~~~HP~HlHG~~F~vl~~~~g~~~~~-~~~~~n~~~p~~rDTv~v~~g~~~~ir~~a  159 (214)
T d1aoza3          81 YQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAE-EESSLNLKNPPLRNTVVIFPYGWTAIRFVA  159 (214)
T ss_dssp             EEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGG-GGGGSCCSSCCEESEEEECTTEEEEEEEEC
T ss_pred             EEecCCCEEEEEEeccccccCCCCCCcceEeecceeEEeccCCCccccc-ccccccccCCceecCcccCCCceEEEEEec
Confidence            44567775    777642   1356899999999999999999988753 245789999999999999999999999999


Q ss_pred             CCccc----cccccCCCCCCccCCccceeEEEEeCCccccccCCCCCCCCCCC
Q 037454          234 HSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC  282 (282)
Q Consensus       234 dnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~~~~c  282 (282)
                      ||||+    ||++||+     +.||  +++|+|.+.     +++++|.++++|
T Consensus       160 dnpG~w~~HCH~~~H~-----~~GM--~~~~~v~~~-----~~~~~P~~~~~c  200 (214)
T d1aoza3         160 DNPGVWAFHCHIEPHL-----HMGM--GVVFAEGVE-----KVGRIPTKALAC  200 (214)
T ss_dssp             CSCEEEEEEESSHHHH-----HTTC--EEEEEECGG-----GCCCCCHHHHSS
T ss_pred             CCCeeEEEEECcHHHH-----hCcC--cEEEEEccc-----cccCCCcccccc
Confidence            99999    9999999     9999  999998644     456788889988
>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId: 219653]} Back     information, alignment and structure
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId: 219653]} Back     information, alignment and structure
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]} Back     information, alignment and structure
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId: 219653]} Back     information, alignment and structure
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1mzya2 b.6.1.3 (A:194-371) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure