Citrus Sinensis ID: 037455
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.939 | 0.936 | 0.398 | 1e-148 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.943 | 0.918 | 0.376 | 1e-126 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.874 | 0.902 | 0.359 | 1e-108 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.846 | 0.853 | 0.347 | 1e-100 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.458 | 0.429 | 0.282 | 1e-27 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.472 | 0.310 | 0.244 | 6e-11 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | no | no | 0.471 | 0.304 | 0.245 | 2e-10 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.471 | 0.304 | 0.245 | 2e-10 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.472 | 0.301 | 0.241 | 3e-10 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.467 | 0.298 | 0.248 | 4e-10 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 307/770 (39%), Positives = 432/770 (56%), Gaps = 61/770 (7%)
Query: 7 FMFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDG 66
F ++ L F +VS S S D+ TYI+HM K+ MP+ F H +WY S L S+S
Sbjct: 11 FFLLLCLGFCHVS-----SSSSDQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSIS----- 60
Query: 67 DGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKK 126
D+ LYTY + + GFS L++ + + L PG + E LHTTRTP FLGL +
Sbjct: 61 --DSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDE 118
Query: 127 H-AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNR 185
H A ++P AG SD++VG+LDTG+WPESKSY D G P+P W+G CE G F S CNR
Sbjct: 119 HTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNR 178
Query: 186 KLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTA 245
KLIGAR F++G I + + SPRD GHGTHTSST GS V+ GYA GTA
Sbjct: 179 KLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTA 238
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIA 305
G+AP AR+A+YKV + + +D+LA +D+AIAD V+++S+SL + + + +A
Sbjct: 239 RGMAPRARVAVYKVCWLGGCFS---SDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVA 295
Query: 306 IGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVI 365
IGAFAA++RGI V+CSAGN+GP S+ N APWIT VGAGT+DR+F A LGN +
Sbjct: 296 IGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGK-NFT 354
Query: 366 GKSVYPENLFVSREPIYFGYGNRSK----EICEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421
G S++ + + GN S +C + + V GK + C N V
Sbjct: 355 GVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARV--- 411
Query: 422 QQLEEVRKSGAAGAIF--SADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSI 479
Q+ + V+ +G G I +A + + L + +P V K G++++ Y+ N T SI
Sbjct: 412 QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASI 471
Query: 480 KFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYL 539
T++G KP+P VA FSSRGP+ +P ILKPD++APGV+ILAAW + D
Sbjct: 472 SILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSR 531
Query: 540 LTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599
++ ++SGTSMSCPH + +AAL+K+ H +WS AAIRSALMTTA + D +TG
Sbjct: 532 RVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATG 591
Query: 600 VAGTPLDFGAGHINPNKAMDPGLVVLTGTSD----------------------FTC---- 633
TP D GAGH++P A +PGL+ T D +TC
Sbjct: 592 KPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSK 651
Query: 634 QYANLDLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLS 693
Y+ DLNYPSF + N ++ + R +T+V + G+K+ V+PA L+
Sbjct: 652 SYSVADLNYPSFAV--NVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLN 709
Query: 694 FAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPI 743
F K +++T ++ S K + +FG + W D GKH+V SP+
Sbjct: 710 FKEANEKKSYTVTFTVD-----SSKPSGSNSFGSIEWSD--GKHVVGSPV 752
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust.
Identities = 300/796 (37%), Positives = 429/796 (53%), Gaps = 84/796 (10%)
Query: 4 FNPFMFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAP-FSHHHHWYMSVLSSLSS 62
P F + ++FL + +S S ++TYI+ + + A F+ W++S L
Sbjct: 1 MEPKPFFLCIIFLL--FCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVL 58
Query: 63 SDDGDGDAPTH--LYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQ 120
+ + + P+ LY+Y ++GF+A L++++ E L+ P A + + TT + +
Sbjct: 59 GVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYK 118
Query: 121 FLGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEF 178
FLGL ++GVW + FG I+G+LDTG+WPES S+DD GMP +P +W+G C+ G F
Sbjct: 119 FLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESF 178
Query: 179 NTSHCNRKLIGARSFSKGIR-----QNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQ 233
++S CNRKLIGAR F +G R + N+ +Y S RD GHGTHT+ST+GGS V
Sbjct: 179 SSSSCNRKLIGARFFIRGHRVANSPEESPNMP--REYISARDSTGHGTHTASTVGGSSVS 236
Query: 234 DVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLA 293
+ G G A G+AP A IA+YKV + N +D+LA +D AI D VD++SLSL
Sbjct: 237 MANVLGNGAGVARGMAPGAHIAVYKVCWFN---GCYSSDILAAIDVAIQDKVDVLSLSLG 293
Query: 294 -FPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
FP +D+ IAIG F A++RGI V C+AGN+GP S+ N APW++ +GAGT+DR F
Sbjct: 294 GFPIPLYDDT-IAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFP 352
Query: 353 AHVTLGNEELTVIGKSVYP----ENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYI 408
A V L N +L + G+S+YP +N E IY G++ E C S + + GK +
Sbjct: 353 AVVRLANGKL-LYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMV 411
Query: 409 FCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD--SRQHLSPEVFNMPFVAVNLKDGELVK 466
C NG ++ E V+++G I + +++ S +V +P + + L+K
Sbjct: 412 ICDRGVNGR---SEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLK 468
Query: 467 KYIINVGNATVSIKFQI----TILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDIL 522
Y+ NATV K +I T++G AP+VA FS+RGPSL +P ILKPD++APGV+I+
Sbjct: 469 AYV----NATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNII 524
Query: 523 AAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582
AAW N + D ++T++SGTSMSCPH + I AL+++ + +WS AAI+SALMTT
Sbjct: 525 AAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTT 584
Query: 583 ADVLDNAYGMITD--KSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANL-- 638
AD+ D I D K GV GAGH+NP KA++PGLV D+ L
Sbjct: 585 ADLYDRQGKAIKDGNKPAGV----FAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGF 640
Query: 639 -------------------------DLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAY 673
LNYPS +I T +RV TNV S Y
Sbjct: 641 TRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRV-TNVGSPNSIY 699
Query: 674 TAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTV-----NINLGSAVSPKSNFLGNFGYL 728
+ VKAP G+KV V P L F K+ S V N G V+ + G L
Sbjct: 700 SVNVKAPEGIKVIVNPKRLVF--KHVDQTLSYRVWFVLKKKNRGGKVASFAQ-----GQL 752
Query: 729 TWYDV-NGKHLVRSPI 743
TW + N VRSPI
Sbjct: 753 TWVNSHNLMQRVRSPI 768
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 269/749 (35%), Positives = 383/749 (51%), Gaps = 89/749 (11%)
Query: 30 RKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTH-LYTYNHVMDGFSAVL 88
+ YI++M + +H HH M L + G AP L+TY +GF+ L
Sbjct: 31 KNIYIVYMGRKLEDPDSAHLHHRAM--LEQVV----GSTFAPESVLHTYKRSFNGFAVKL 84
Query: 89 SKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTG 148
++ + E++ M G + +L LHTTR+ FLG V + S+I+VG+LDTG
Sbjct: 85 TEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTG 142
Query: 149 IWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTD 208
IWPES S+DD G P P +W+G CE F CNRK+IGARS+ G +
Sbjct: 143 IWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIGARSYHIG------RPISPG 193
Query: 209 DYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAA 268
D + PRD GHGTHT+ST G V + +G GTA G P+ARIA YKV + N
Sbjct: 194 DVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW---NDGC 250
Query: 269 AETDVLAGMDQAIADGVDIMSLSL--AFPETTFDENPIAIGAFAALKRGIFVACSAGNSG 326
++TD+LA D AIADGVDI+SLS+ A P F + IAIG+F A++RGI + SAGN G
Sbjct: 251 SDTDILAAYDDAIADGVDIISLSVGGANPRHYF-VDAIAIGSFHAVERGILTSNSAGNGG 309
Query: 327 PRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEE------LTVIGKSVYPENLFVSREP 380
P ++ + +PW+ +V A T+DR+F V +GN + + YP L R+
Sbjct: 310 PNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYP--LVSGRDI 367
Query: 381 IYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD 440
G+ + C S + + GK + C + G ++ L+ GAAG + +++
Sbjct: 368 PNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF-GPHEFFKSLD-----GAAGVLMTSN 421
Query: 441 SRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSR 500
+R + + + +P ++ D +YI ++ + +I TIL AP V +FSSR
Sbjct: 422 TRDYA--DSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSR 478
Query: 501 GPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIA 560
GP+ + ++KPDI PGV+ILAAW P IR + L + ++SGTSMSCPH IA
Sbjct: 479 GPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL---FNIISGTSMSCPHITGIA 535
Query: 561 ALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDP 620
VK + WS AAI+SALMTTA ++ + + +G+GH+NP KA+ P
Sbjct: 536 TYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE---------FAYGSGHVNPLKAVRP 586
Query: 621 GLVVLTGTSDFT----------------------CQYANL----DLNYPSFIIILNNTNT 654
GLV SD+ C N DLNYPSF + ++ + T
Sbjct: 587 GLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQT 646
Query: 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSA 714
+ F R LT+VA S Y A + AP G+ + V P LSF G + F+LTV ++
Sbjct: 647 FNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGF 706
Query: 715 VSPKSNFLGNFGYLTWYDVNGKHLVRSPI 743
V S L W D G H VRSPI
Sbjct: 707 VVSAS--------LVWSD--GVHYVRSPI 725
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 257/740 (34%), Positives = 388/740 (52%), Gaps = 101/740 (13%)
Query: 53 YMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGH 112
++++LSSL+ S + + +Y+Y + F+A LS ++ +++ +M + +
Sbjct: 56 HINLLSSLNISQEEAKE--RKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRK 113
Query: 113 LHTTRTPQFLGL----KKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERW 168
LHTT++ F+GL K+H D+I+G+LDTGI P+S+S+ D G+ P P +W
Sbjct: 114 LHTTKSWDFVGLPLTAKRHLKAE------RDVIIGVLDTGITPDSESFLDHGLGPPPAKW 167
Query: 169 RGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIG 228
+G+C G N + CN K+IGA+ F + +G N+ + SP D GHGTHTSST+
Sbjct: 168 KGSC--GPYKNFTGCNNKIIGAKYF----KHDG-NVPA-GEVRSPIDIDGHGTHTSSTVA 219
Query: 229 GSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIM 288
G V + +G A GTA G P AR+AMYKV ++ A+ D+LAG + AI DGV+I+
Sbjct: 220 GVLVANASLYGIANGTARGAVPSARLAMYKVCWARS--GCADMDILAGFEAAIHDGVEII 277
Query: 289 SLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVD 348
S+S+ P + + I++G+F A+++GI SAGN GP ++ N PWI V A +D
Sbjct: 278 SISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGID 337
Query: 349 REFAAHVTLGN-EELTVIGKSVYPENLFVSREPIYFGYGNRSK-------EICEPNSTDS 400
R F + + LGN + + +G S++ P+ G C +S D
Sbjct: 338 RTFKSKIDLGNGKSFSGMGISMFSPK--AKSYPLVSGVDAAKNTDDKYLARYCFSDSLDR 395
Query: 401 KAVAGKYIFCAFDYNGNVTVYQQLEEVRKS-GAAGAIFSADSRQHL-SPEVFNMPFVAVN 458
K V GK + C G +E KS G AGAI +D Q+L + ++F P +VN
Sbjct: 396 KKVKGKVMVCRMGGGG-------VESTIKSYGGAGAIIVSD--QYLDNAQIFMAPATSVN 446
Query: 459 LKDGELVKKYIINVGNATVSIK--FQITILGTKPAPQVANFSSRGPSLRSPWILKPDILA 516
G+++ +YI + +A+ I+ Q+TI PAP VA+FSSRGP+ S +LKPDI A
Sbjct: 447 SSVGDIIYRYINSTRSASAVIQKTRQVTI----PAPFVASFSSRGPNPGSIRLLKPDIAA 502
Query: 517 PGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIR 576
PG+DILAA+ + D + +T+LSGTSM+CPH A +AA VK+ H DW+ AAI+
Sbjct: 503 PGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIK 562
Query: 577 SALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVV------------ 624
SA++T+A + + +G G INP +A PGLV
Sbjct: 563 SAIITSAKPISRRVNKDAE---------FAYGGGQINPRRAASPGLVYDMDDISYVQFLC 613
Query: 625 -----------LTGTSDFTCQ-----YANLDLNYPSFIIILNNTNTASF-TFKRVLTNVA 667
L GT +C + LNYP+ + L + T++ F+R +TNV
Sbjct: 614 GEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVG 673
Query: 668 DTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTV---NINLGSAVSPKSNFLGN 724
S YTA V+AP G+++ V+P +LSF+ K F + V + G VS
Sbjct: 674 PPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVS-------- 725
Query: 725 FGYLTWYDVNGKHLVRSPIV 744
G L W + +H VRSPIV
Sbjct: 726 -GLLVWK--SPRHSVRSPIV 742
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 186/404 (46%), Gaps = 58/404 (14%)
Query: 208 DDYD-------SPR-DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKV 259
+DYD PR + HGTH + T+ A GT GVAP A + Y+V
Sbjct: 214 NDYDPKETPTGDPRGEATDHGTHVAGTVA------------ANGTIKGVAPDATLLAYRV 261
Query: 260 LFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFA---ALKRGI 316
L + +V+AG+++A+ DG D+M+LSL NP + A A+ G+
Sbjct: 262 LGPGG--SGTTENVIAGVERAVQDGADVMNLSLG----NSLNNPDWATSTALDWAMSEGV 315
Query: 317 FVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFV 376
S GNSGP +++ + A+ G A + L NE G + +
Sbjct: 316 VAVTSNGNSGPNGWTVGSPGTSREAISVG------ATQLPL-NEYAVTFGSYSSAKVMGY 368
Query: 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIF--CAFDYNGNVTVYQQLEEVRKSGAAG 434
++E N+ E+ E ++K GK + A G++ + + +K+GA G
Sbjct: 369 NKEDDVKALNNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIG 428
Query: 435 AIFSADSRQHLSPEV--FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITI---LGTK 489
+ + + V ++P + ++L+DGE K + + F++T+ LG
Sbjct: 429 MVVYNNLSGEIEANVPGMSVPTIKLSLEDGE---KLVSALKAGETKTTFKLTVSKALG-- 483
Query: 490 PAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGT 549
QVA+FSSRGP + + W++KPDI APGV+I++ ++P P Y GT
Sbjct: 484 --EQVADFSSRGPVMDT-WMIKPDISAPGVNIVSTIPTHDPDHPY-------GYGSKQGT 533
Query: 550 SMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMI 593
SM+ PH A A++K WS I++A+M TA L ++ G +
Sbjct: 534 SMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 168/430 (39%), Gaps = 73/430 (16%)
Query: 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278
HGTH S + G+ + +G P A++ + +V N LA + +
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRLEG----AMPEAQLLLMRVEIVN-GLADYARNYAQAIR 247
Query: 279 QAIADGVDIMSLSLAFPETTF----DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIR- 333
A+ G ++++S + DE A A +G+ + SAGN R
Sbjct: 248 DAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 334 --------------NGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSRE 379
A V + + D++ T+ + V N F +
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 365
Query: 380 PIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439
+ Y NR + D K V GK A G++ ++ +K+GA G +
Sbjct: 366 AYDYAYANRGMK-----EDDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLIYD 417
Query: 440 DSRQHLS---PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKPAPQV 494
+ + P V MP ++ KDG L+K+ N +I F T +L T ++
Sbjct: 418 NQDKGFPIELPNVDQMPAAFISRKDGLLLKE------NPQKTITFNATPKVLPTASGTKL 471
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCP 554
+ FSS G L + +KPDI APG DIL++ V NN Y LSGTSMS P
Sbjct: 472 SRFSSWG--LTADGNIKPDIAAPGQDILSS-VANNK------------YAKLSGTSMSAP 516
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG-------TPLDF 607
A I L++ + I+ MT ++ LD A ++ +T + +P
Sbjct: 517 LVAGIMGLLQKQYE------IQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQ 570
Query: 608 GAGHINPNKA 617
GAG ++ KA
Sbjct: 571 GAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 169/431 (39%), Gaps = 75/431 (17%)
Query: 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278
HGTH S + G+ + +G P A++ + +V N LA + +
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRLEG----AMPEAQLLLMRVEIVN-GLADYARNYAQAIR 249
Query: 279 QAIADGVDIMSLSLAFPETTF----DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIR- 333
A+ G ++++S + DE A A +G+ + SAGN R
Sbjct: 250 DAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRL 307
Query: 334 --------------NGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSRE 379
A V + + D++ T+ + V N F +
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 367
Query: 380 PIYFGYGNR-SKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438
+ Y NR +KE D K V GK A G++ ++ +K+GA G +
Sbjct: 368 AYDYAYANRGTKE------DDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLIY 418
Query: 439 ADSRQHLS---PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKPAPQ 493
+ + P V MP ++ KDG L+K N+ +I F T +L T +
Sbjct: 419 DNQDKGFPIELPNVDQMPAAFISRKDGLLLK------DNSKKTITFNATPKVLPTASGTK 472
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSC 553
++ FSS G L + +KPDI APG DIL++ V NN Y LSGTSMS
Sbjct: 473 LSRFSSWG--LTADGNIKPDIAAPGQDILSS-VANNK------------YAKLSGTSMSA 517
Query: 554 PHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG-------TPLD 606
P A I L++ + + MT ++ LD A ++ +T + +P
Sbjct: 518 PLVAGIMGLLQKQYE------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQ 571
Query: 607 FGAGHINPNKA 617
GAG ++ KA
Sbjct: 572 QGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 169/431 (39%), Gaps = 75/431 (17%)
Query: 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278
HGTH S + G+ + +G P A++ + +V N LA + +
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRLEG----AMPEAQLLLMRVEIVN-GLADYARNYAQAIR 249
Query: 279 QAIADGVDIMSLSLAFPETTF----DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIR- 333
A+ G ++++S + DE A A +G+ + SAGN R
Sbjct: 250 DAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRL 307
Query: 334 --------------NGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSRE 379
A V + + D++ T+ + V N F +
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 367
Query: 380 PIYFGYGNR-SKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438
+ Y NR +KE D K V GK A G++ ++ +K+GA G +
Sbjct: 368 AYDYAYANRGTKE------DDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLIY 418
Query: 439 ADSRQHLS---PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKPAPQ 493
+ + P V MP ++ KDG L+K N+ +I F T +L T +
Sbjct: 419 DNQDKGFPIELPNVDQMPAAFISRKDGLLLK------DNSKKTITFNATPKVLPTASGTK 472
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSC 553
++ FSS G L + +KPDI APG DIL++ V NN Y LSGTSMS
Sbjct: 473 LSRFSSWG--LTADGNIKPDIAAPGQDILSS-VANNK------------YAKLSGTSMSA 517
Query: 554 PHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG-------TPLD 606
P A I L++ + + MT ++ LD A ++ +T + +P
Sbjct: 518 PLVAGIMGLLQKQYE------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQ 571
Query: 607 FGAGHINPNKA 617
GAG ++ KA
Sbjct: 572 QGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 167/430 (38%), Gaps = 73/430 (16%)
Query: 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278
HGTH S + G+ + +G P A++ + +V N LA + +
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRLEG----AMPEAQLLLMRVEIVN-GLADYARNYAQAIR 247
Query: 279 QAIADGVDIMSLSLAFPETTF----DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIR- 333
A+ G ++++S + DE A A +G+ + SAGN R
Sbjct: 248 DAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 334 --------------NGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSRE 379
A V + + D++ T+ + V N F +
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 365
Query: 380 PIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439
+ Y NR + D K V GK A G++ ++ +K+GA G +
Sbjct: 366 AYDYAYANRGMK-----EDDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLIYD 417
Query: 440 DSRQHLS---PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKPAPQV 494
+ + P V MP ++ KDG L+K+ N +I F T +L T ++
Sbjct: 418 NQDKGFPIELPNVDQMPAAFISRKDGLLLKE------NPQKTITFNATPKVLPTASGTKL 471
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCP 554
+ FSS G L + +KPDI APG DIL++ V NN Y LSGTSMS P
Sbjct: 472 SRFSSWG--LTADGNIKPDIAAPGQDILSS-VANN------------KYAKLSGTSMSAP 516
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG-------TPLDF 607
A I L++ + + MT ++ LD A ++ +T + +P
Sbjct: 517 LVAGIMGLLQKQYE------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQ 570
Query: 608 GAGHINPNKA 617
GAG ++ KA
Sbjct: 571 GAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 170/434 (39%), Gaps = 81/434 (18%)
Query: 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278
HGTH S + G+ + +G P A++ + +V N LA D
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRLEG----AMPEAQLLLMRVEIVN-GLA----DYARNYA 243
Query: 279 QAIADGVDIMS--LSLAFPETTF------DENPIAIGAFAALKRGIFVACSAGNSGPRPY 330
QAI D V++ + ++++F DE A A +G+ + SAGN
Sbjct: 244 QAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGG 301
Query: 331 SIR---------------NGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLF 375
R A V + + D++ T+ + V N F
Sbjct: 302 KTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRF 361
Query: 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435
+ + Y NR + D K V GK A G++ ++ +K+GA G
Sbjct: 362 EPNKAYDYAYANRGMK-----EDDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGV 413
Query: 436 IFSADSRQHLS---PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKP 490
+ + + P V MP ++ KDG L+K+ N +I F T +L T
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKE------NPQKTITFNATPKVLPTAS 467
Query: 491 APQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTS 550
+++ FSS G L + +KPDI APG DIL++ V NN Y LSGTS
Sbjct: 468 GTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-VANN------------KYAKLSGTS 512
Query: 551 MSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG-------T 603
MS P A I L++ + + MT ++ LD A ++ +T + +
Sbjct: 513 MSAPLVAGIMGLLQKQYE------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 566
Query: 604 PLDFGAGHINPNKA 617
P GAG ++ KA
Sbjct: 567 PRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | ||||||
| 147795297 | 766 | hypothetical protein VITISV_001779 [Viti | 0.956 | 0.942 | 0.653 | 0.0 | |
| 224105567 | 758 | predicted protein [Populus trichocarpa] | 0.960 | 0.956 | 0.648 | 0.0 | |
| 359475365 | 849 | PREDICTED: subtilisin-like protease-like | 0.952 | 0.846 | 0.654 | 0.0 | |
| 359475363 | 761 | PREDICTED: subtilisin-like protease-like | 0.958 | 0.951 | 0.657 | 0.0 | |
| 255555427 | 778 | Xylem serine proteinase 1 precursor, put | 0.988 | 0.958 | 0.644 | 0.0 | |
| 225428832 | 769 | PREDICTED: subtilisin-like protease-like | 0.966 | 0.949 | 0.641 | 0.0 | |
| 147795298 | 769 | hypothetical protein VITISV_001780 [Viti | 0.966 | 0.949 | 0.636 | 0.0 | |
| 225428838 | 765 | PREDICTED: subtilisin-like protease [Vit | 0.957 | 0.945 | 0.642 | 0.0 | |
| 147801126 | 765 | hypothetical protein VITISV_029978 [Viti | 0.957 | 0.945 | 0.642 | 0.0 | |
| 297741264 | 687 | unnamed protein product [Vitis vinifera] | 0.851 | 0.935 | 0.568 | 0.0 |
| >gi|147795297|emb|CAN64995.1| hypothetical protein VITISV_001779 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/753 (65%), Positives = 588/753 (78%), Gaps = 31/753 (4%)
Query: 19 SYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYN 78
S T+ SMS D +TYI+HMDK+AMP PFS HH WY+S LSS S D G PTHLYTYN
Sbjct: 17 STVTTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPD---GILPTHLYTYN 73
Query: 79 HVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVWPAAGFGS 138
HV+DGFSAVLS++ L+QL+KMPGH ATY E+FG +HTT TP+FLGL+ + G WP FG
Sbjct: 74 HVLDGFSAVLSQSHLDQLEKMPGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGE 133
Query: 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIR 198
D+++GILDTGIWPES+S+ D+GM PVP+RWRGACE G EFN+S CNRKLIGARSFSK ++
Sbjct: 134 DMVIGILDTGIWPESESFQDKGMAPVPDRWRGACESGAEFNSSLCNRKLIGARSFSKALK 193
Query: 199 QNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYK 258
Q GLNIST DDYDSPRDF+GHGTHTSST GS V D ++FGYAKGTA G+AP AR+AMYK
Sbjct: 194 QRGLNISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYK 253
Query: 259 VLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFV 318
VLF ND +A +D LAG+DQAIADGVD+MSLSL F ETTF+ENPIA+GAFAA+++GIFV
Sbjct: 254 VLFYNDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFV 313
Query: 319 ACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSR 378
+CSAGNSGP Y+I NGAPWIT +GAGT+DR++AA V+LGN L + GKSVYP++L +S+
Sbjct: 314 SCSAGNSGPHGYTIFNGAPWITTIGAGTIDRDYAADVSLGNGILNIRGKSVYPDDLLISQ 373
Query: 379 EPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438
P+YFG+GNRSKE+CE N+ D K AGK +FC F +G + Q +E+ + GAAGAIFS
Sbjct: 374 VPLYFGHGNRSKELCEDNAIDQKDAAGKIVFCDFSESGGI----QSDEMERVGAAGAIFS 429
Query: 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFS 498
DS LSP F MPFVAV+ KDG+LVK YII N V IKFQIT+LG KPAP VA FS
Sbjct: 430 TDSGIFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFS 489
Query: 499 SRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAA 558
SRGPS R+P ILKPDILAPGVDILAAW PN PI DDYLLTDY LLSGTSM+ PHA
Sbjct: 490 SRGPSRRAPMILKPDILAPGVDILAAWAPNRGITPIGDDYLLTDYALLSGTSMASPHAVG 549
Query: 559 IAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAM 618
+AAL+K+ H DWS AA+RSA+MTTA +LDN G I D +TGV+GTPLDFGAGHINPN AM
Sbjct: 550 VAALLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVSGTPLDFGAGHINPNMAM 609
Query: 619 DPGLV-----------------------VLTGTSDFTCQYANLDLNYPSFIIILNNTNTA 655
DPGLV ++T S F+C ANLDLNYPSF+++LNNTNT
Sbjct: 610 DPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTT 669
Query: 656 SFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAV 715
S+TFKRVLTNV +T S Y A+VK P+GMKV V P+T+SF G+YSKAEF++TV INLG A
Sbjct: 670 SYTFKRVLTNVENTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFNMTVEINLGDA- 728
Query: 716 SPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
P+S+++GNFGYLTW++ NG H+V SPIVSA A
Sbjct: 729 RPQSDYIGNFGYLTWWEANGTHVVSSPIVSAIA 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105567|ref|XP_002313857.1| predicted protein [Populus trichocarpa] gi|222850265|gb|EEE87812.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/779 (64%), Positives = 595/779 (76%), Gaps = 54/779 (6%)
Query: 1 MANFNP--FMFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLS 58
M +F P +F + LLF A S S S DRKTYIIHMDK MP+ FS H WY+S LS
Sbjct: 1 MGHFTPPKLLFALCLLF---PIAASFSTSNDRKTYIIHMDKTGMPSTFSTQHDWYVSTLS 57
Query: 59 SLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRT 118
SLSS DD P HLY+Y HVMDGFSAVLS+ L+QL+ +PGH AT+ ES GHLHTT T
Sbjct: 58 SLSSPDD---IPPIHLYSYKHVMDGFSAVLSQTHLDQLESLPGHVATFPESIGHLHTTHT 114
Query: 119 PQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEF 178
P+FLGL K AG WPA FG D+I+G+LDTGIWPES+S++D+ MPPVP+RWRG CE G EF
Sbjct: 115 PKFLGLNKRAGAWPAGKFGDDVIIGVLDTGIWPESESFNDKNMPPVPQRWRGICETGTEF 174
Query: 179 NTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHF 238
NTSHCN+KLIGAR FS+G++Q GLNIS+TDDYDSPRD+ GHG+HTSST GGS VQ D+F
Sbjct: 175 NTSHCNKKLIGARKFSQGMKQVGLNISSTDDYDSPRDYMGHGSHTSSTAGGSPVQHADYF 234
Query: 239 GYAKGTAIGVAPMARIAMYKVLF---SNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFP 295
GYAKGTA G+AP+ARIAMYKV+F +D AA TD LAGMDQAI DGVDIMSLSL F
Sbjct: 235 GYAKGTATGMAPLARIAMYKVIFYSGDSDGYDAAATDTLAGMDQAIEDGVDIMSLSLGFF 294
Query: 296 ETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHV 355
ET F ENPIAIGAFAALK+GIFV CSAGNSGP Y++ NGAPW+T +GAGT+DR+F A V
Sbjct: 295 ETPFYENPIAIGAFAALKKGIFVTCSAGNSGPHGYTMFNGAPWLTTIGAGTIDRQFGAEV 354
Query: 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYN 415
TLGN + V G S+YPENLF+SR P+YFG GNRSKE+C+ NS D K VAGK++F
Sbjct: 355 TLGNGSIIVTGTSIYPENLFISRVPVYFGLGNRSKEVCDWNSLDPKDVAGKFLFYI---- 410
Query: 416 GNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNA 475
+GA GAIFS D + L P+ F MPFV V+ KDG L+K YI+N NA
Sbjct: 411 --------------AGATGAIFSEDDAEFLHPDYFYMPFVIVSTKDGNLLKNYIMNTTNA 456
Query: 476 TVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIR 535
TVS+KF +T+LGTKPAP+VA FSSRGP RSPW LKPDILAPG ILAAWVPN + PIR
Sbjct: 457 TVSVKFGLTLLGTKPAPKVAYFSSRGPDRRSPWTLKPDILAPGYHILAAWVPNRGFAPIR 516
Query: 536 -DDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMIT 594
DDYLLTDY L+SGTSMSCPH A IAAL+KA HRDWS AAIRSALMTTADV+DNA G I
Sbjct: 517 EDDYLLTDYALVSGTSMSCPHVAGIAALLKAAHRDWSPAAIRSALMTTADVMDNADGRII 576
Query: 595 DKSTGVAGTPLDFGAGHINPNKAMDPGLV-----------------------VLTGTSDF 631
D +T VAGTPLDFGAGH+NPNKAMDPGLV ++TGTS+F
Sbjct: 577 DMTTEVAGTPLDFGAGHVNPNKAMDPGLVYDIVAEDYINYLCAMNYTSQQVQIITGTSNF 636
Query: 632 TCQYANLDLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPAT 691
TCQYA+LDLNYPSF+++LNNTNT++ TFKRVLTNVAD S Y A + AP GMK VQP T
Sbjct: 637 TCQYASLDLNYPSFLVLLNNTNTSTTTFKRVLTNVADNSSVYRAVISAPQGMKALVQPTT 696
Query: 692 LSFAGKYSKAEFSLTVNINLGSA-VSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFAN 749
L F+GK SKAEF++TV I+L +A V+P+S++ GN+G+L+WY+VNG+H+VRSP+VSA A+
Sbjct: 697 LIFSGKNSKAEFNMTVEIDLEAASVTPQSDYFGNYGFLSWYEVNGRHVVRSPVVSAIAS 755
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475365|ref|XP_002282292.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/750 (65%), Positives = 585/750 (78%), Gaps = 31/750 (4%)
Query: 22 TSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVM 81
T+ SMS D +TYI+HMDK+AMP PFS HH WY+S LSS S D G PTHLYTYNHV+
Sbjct: 103 TTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPD---GILPTHLYTYNHVL 159
Query: 82 DGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVWPAAGFGSDII 141
DGFSAVLS++ L+QL+KM GH ATY E+FG +HTT TP+FLGL+ + G WP FG D++
Sbjct: 160 DGFSAVLSQSHLDQLEKMSGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMV 219
Query: 142 VGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNG 201
+GILDTGIWPES+S+ D+GM PVP+RWRGACE GVEFN+S CNRKLIGARSFSK ++Q G
Sbjct: 220 IGILDTGIWPESESFQDKGMAPVPDRWRGACESGVEFNSSLCNRKLIGARSFSKALKQRG 279
Query: 202 LNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLF 261
LNIST DDYDSPRDF+GHGTHTSST GS V D ++FGYAKGTA G+AP AR+AMYKVLF
Sbjct: 280 LNISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYKVLF 339
Query: 262 SNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACS 321
ND +A +D LAG+DQAIADGVD+MSLSL F ETTF+ENPIA+GAFAA+++GIFV+CS
Sbjct: 340 YNDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCS 399
Query: 322 AGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPI 381
AGNSGP Y+I NGAPWIT +GAGT+D ++AA V+LGN L + GKSVYPE+L +S+ P+
Sbjct: 400 AGNSGPHGYTIFNGAPWITTIGAGTIDLDYAADVSLGNGILNIRGKSVYPEDLLISQVPL 459
Query: 382 YFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441
YFG+GNRSKE+CE N+ D K AGK +FC F +G + Q +E+ + GAAGAIFS DS
Sbjct: 460 YFGHGNRSKELCEDNAIDPKDAAGKIVFCDFSESGGI----QSDEMERVGAAGAIFSTDS 515
Query: 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRG 501
LSP F MPFVAV+ KDG+LVK YII N V IKFQIT+LG KPAP VA FSSRG
Sbjct: 516 GIFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFSSRG 575
Query: 502 PSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAA 561
PS R+P ILKPDILAPGVDILAAW N PI D YLLT+Y LLSGTSM+ PHA +AA
Sbjct: 576 PSRRAPMILKPDILAPGVDILAAWASNRGITPIGDYYLLTNYALLSGTSMASPHAVGVAA 635
Query: 562 LVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPG 621
L+K+ H DWS AA+RSA+MTTA +LDN G I D +TGVAGTPLDFGAGHINPN AMDPG
Sbjct: 636 LLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPG 695
Query: 622 LV-----------------------VLTGTSDFTCQYANLDLNYPSFIIILNNTNTASFT 658
LV ++T S F+C ANLDLNYPSF+++LNNTNT S+T
Sbjct: 696 LVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYT 755
Query: 659 FKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPK 718
FKRVLTNV +T S Y A+VK P+GMKV VQP+ +SFAGKYSKAEF++TV INLG A P+
Sbjct: 756 FKRVLTNVENTHSVYHASVKLPSGMKVSVQPSVVSFAGKYSKAEFNMTVEINLGDA-RPQ 814
Query: 719 SNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
S+++GNFGYLTW++ NG H+V SPIVSA A
Sbjct: 815 SDYIGNFGYLTWWEANGTHVVSSPIVSAIA 844
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475363|ref|XP_002282304.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/761 (65%), Positives = 594/761 (78%), Gaps = 37/761 (4%)
Query: 13 LLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPT 72
LLFL+++ +TS++ D TYIIHMDK+AMP FS HH WY S LSS+SS D G PT
Sbjct: 8 LLFLFLALSTSVAE--DLGTYIIHMDKSAMPMTFSSHHDWYRSTLSSMSSPD---GILPT 62
Query: 73 HLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVWP 132
HLYTYNHV+DGFSAVLS+ L+QL+KM GH ATY +SFG LHTT TP+FLGL+K G WP
Sbjct: 63 HLYTYNHVLDGFSAVLSRAHLDQLEKMAGHLATYPDSFGKLHTTHTPKFLGLEKKVGSWP 122
Query: 133 AAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARS 192
FG D+I+GILD+GIWPES+S+ D+GM PVP+RWRGACE GVEFN+S+CNRKLIGARS
Sbjct: 123 KGKFGEDMIIGILDSGIWPESESFKDKGMAPVPDRWRGACESGVEFNSSYCNRKLIGARS 182
Query: 193 FSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMA 252
FSKG++Q GLNIS DDYDSPRDF GHGTHTSST GS V+D ++FGYAKGTA GVAP A
Sbjct: 183 FSKGMKQRGLNISLPDDYDSPRDFLGHGTHTSSTAAGSPVRDANYFGYAKGTATGVAPKA 242
Query: 253 RIAMYKVLFSND--NLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFA 310
R+AMYKV F +D + AA +D LAGMDQAIADGVD+MSLSL F ETTFDENPIA+GAFA
Sbjct: 243 RLAMYKVFFFSDSSDPEAAASDTLAGMDQAIADGVDLMSLSLGFFETTFDENPIAVGAFA 302
Query: 311 ALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVY 370
A+++GIFV+CSAGN+GP Y+I NGAPWIT +GAGT+DR++AA VTLGN L V GKSVY
Sbjct: 303 AMEKGIFVSCSAGNAGPHGYTIFNGAPWITTIGAGTIDRDYAADVTLGNGILRVRGKSVY 362
Query: 371 PENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKS 430
PE++F+S P+YFG+GN SKE C+ N+ + + VAGK +FC D+ G YQQ +E+ +
Sbjct: 363 PEDVFISNVPLYFGHGNASKETCDYNALEPQEVAGKIVFC--DFPGG---YQQ-DEIERV 416
Query: 431 GAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKP 490
GAAGAIFS DS+ L P F +PFVAV+ KDG+LVK YII N V IKFQ T+LG KP
Sbjct: 417 GAAGAIFSTDSQNFLGPRDFYIPFVAVSHKDGDLVKDYIIKSENPVVDIKFQKTVLGAKP 476
Query: 491 APQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTS 550
APQVA FSSRGPS R+P ILKPDILAPGVDILAAW PN PI DDYLLTDY LLSGTS
Sbjct: 477 APQVAWFSSRGPSRRAPMILKPDILAPGVDILAAWAPNIGITPIGDDYLLTDYALLSGTS 536
Query: 551 MSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAG 610
M+ PHA +AAL+K+ H DWS AAIRSA+MTTA +LDN G I D +TGVAGTPLDFGAG
Sbjct: 537 MASPHAVGVAALLKSAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAG 596
Query: 611 HINPNKAMDPGLV-----------------------VLTGTSDFTCQYANLDLNYPSFII 647
HINPN AMDPGLV ++T S F+C ANLDLNYPSF++
Sbjct: 597 HINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMV 656
Query: 648 ILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTV 707
+LNNTNT S+TFKRVLTNV +T + Y A+VK P+GMKV VQP+ +SFAGKYSKAEF++TV
Sbjct: 657 LLNNTNTTSYTFKRVLTNVENTHTVYHASVKQPSGMKVSVQPSIVSFAGKYSKAEFNMTV 716
Query: 708 NINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
INLG A P+S+++GNFGYLTW++ NG H+V SPIVSA A
Sbjct: 717 EINLGDA-RPQSDYIGNFGYLTWWEANGTHVVSSPIVSAIA 756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555427|ref|XP_002518750.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223542131|gb|EEF43675.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/783 (64%), Positives = 599/783 (76%), Gaps = 37/783 (4%)
Query: 1 MANFNPFMFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSL 60
MA F P F+ L +FL + A SL S RK YIIHMDK+A PA FS HH WY+S LSSL
Sbjct: 1 MAQFTPSKFL-LTVFLLFTIAKSLPTSNGRKAYIIHMDKSAKPAAFSTHHEWYLSTLSSL 59
Query: 61 SSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQ 120
SSSD G +P HLY+Y HVMDGFSAVLS++ L+QL+ +P H AT+ ESFGHLHTT TP+
Sbjct: 60 SSSD---GYSPAHLYSYKHVMDGFSAVLSQDHLDQLESLPSHVATFSESFGHLHTTHTPK 116
Query: 121 FLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNT 180
FLGL +H G+WPA+ FG DII+G+LDTGIWPES+S++D+ MPPVP RW G CE G EFNT
Sbjct: 117 FLGLNRHTGLWPASKFGDDIIIGVLDTGIWPESESFNDKNMPPVPNRWLGICETGTEFNT 176
Query: 181 SHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGY 240
SHCN+KLIGAR FS+G++ LNIS TDDYDSPRDF GHGTHTSST GSRVQ D+FGY
Sbjct: 177 SHCNKKLIGARKFSEGMKHYRLNISKTDDYDSPRDFMGHGTHTSSTAAGSRVQHADYFGY 236
Query: 241 AKGTAIGVAPMARIAMYKVLFSN---DNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET 297
A+G A G+AP ARIAMYKVLF + D+ AA TDVLAGMDQAI DGVDIMSLSL F ET
Sbjct: 237 AEGRATGIAPSARIAMYKVLFYSEDIDSYDAAATDVLAGMDQAIEDGVDIMSLSLGFFET 296
Query: 298 TFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTL 357
F NPIAIGAFAALK+GIFVACSAGN GP Y++ NGAPWIT VGAGTVDR+FAAH+TL
Sbjct: 297 PFFGNPIAIGAFAALKKGIFVACSAGNGGPHGYTMLNGAPWITTVGAGTVDRQFAAHITL 356
Query: 358 GNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGN 417
G+ +T+ G++ YPENLFVSR PIYFG GNRSKE+C+ NS D K VAGK+IFC D++
Sbjct: 357 GDGIMTLTGQTFYPENLFVSRTPIYFGSGNRSKELCDWNSLDHKDVAGKFIFC--DHDDG 414
Query: 418 VTVYQQLEEVRK---SGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGN 474
+V+++ + +GA G IFS D + P+ F P V V+ KDG+L+KKYI+N N
Sbjct: 415 SSVFRKETDRYGPDIAGAIGGIFSEDDGEFEHPDYFYQPVVLVSTKDGDLIKKYILNTTN 474
Query: 475 ATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPI 534
ATVS++F TILGTKPAP+VA FSSRGP LRSPWILKPDILAPG ILAAWVPN + PI
Sbjct: 475 ATVSVEFGKTILGTKPAPKVAYFSSRGPDLRSPWILKPDILAPGYHILAAWVPNRAFAPI 534
Query: 535 R-DDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMI 593
R DDYLLT+Y ++SGTSMSCPHAA +AAL++A HRDWS AAIRSA+MTTA DNA G+I
Sbjct: 535 RDDDYLLTEYAIISGTSMSCPHAAGVAALLRAIHRDWSPAAIRSAMMTTAYTKDNADGVI 594
Query: 594 TDKSTGVAGTPLDFGAGHINPNKAMDPGLV-----------------------VLTGTSD 630
D +TGVAGTPLDFGAGH++PNKAMDPGLV + GTS+
Sbjct: 595 IDMTTGVAGTPLDFGAGHLDPNKAMDPGLVYDIEVADYINYLCALNYTRQQIQTIIGTSN 654
Query: 631 FTCQYANLDLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPA 690
+TC+YA+ DLNYPSF++ILN TNT + TFKRVL NVADT S Y+A V+ P GMK VQP
Sbjct: 655 YTCKYASFDLNYPSFMVILNKTNTITSTFKRVLMNVADTASVYSAVVETPPGMKAVVQPT 714
Query: 691 TLSFAGKYSKAEFSLTVNINL-GSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFAN 749
T+ F GKYSKAEF+LTV INL V+P+S++ GN+G+L WY+VNG H+VRSPIVSA A
Sbjct: 715 TVVFTGKYSKAEFNLTVEINLEADNVTPESDYFGNYGFLWWYEVNGTHVVRSPIVSAIAA 774
Query: 750 STG 752
G
Sbjct: 775 GKG 777
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428832|ref|XP_002282297.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/764 (64%), Positives = 591/764 (77%), Gaps = 34/764 (4%)
Query: 11 ILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDA 70
+L L L + S M+GD +YIIHMDK+AMP FS HH WYMS LSS+SS D G
Sbjct: 9 LLFLLLVPVISISTCMAGDVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSISSPD---GSL 65
Query: 71 PTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGV 130
PTHLYTYNHV+DGFSAVLSK L+QL+KMPGH ATY +SFG LHTT +P+FLGL+K++G
Sbjct: 66 PTHLYTYNHVLDGFSAVLSKAHLDQLEKMPGHLATYPDSFGKLHTTHSPKFLGLEKNSGA 125
Query: 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGA 190
WP FG D+I+GILDTG+WPES+S+ D+GM PVP+RWRGACE GV FN+S+CNRKLIGA
Sbjct: 126 WPEGKFGEDMIIGILDTGVWPESESFRDKGMGPVPKRWRGACESGVAFNSSYCNRKLIGA 185
Query: 191 RSFSKGIRQNGLNISTT-DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
RSFS+G+++ GLN+S DDYDSPRDF GHGTHTSST GS V+ ++FGYA+GTAIG++
Sbjct: 186 RSFSEGLKRRGLNVSAPPDDYDSPRDFHGHGTHTSSTAAGSPVRGANYFGYAEGTAIGIS 245
Query: 250 PMARIAMYKVLFSND--NLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIG 307
P AR+AMYKV+F +D + AA +D LAGMDQAIADGVD+MSLSL F ETTF++NPIA+G
Sbjct: 246 PKARLAMYKVIFLSDLTDGDAAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVG 305
Query: 308 AFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367
AF+A+++GIFV+CSAGNSGP Y++ NGAPWIT +GAGT+DR++AA V LGN LTV GK
Sbjct: 306 AFSAMEKGIFVSCSAGNSGPDAYTMFNGAPWITTIGAGTIDRDYAADVKLGNGILTVRGK 365
Query: 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEV 427
SVYPENL +S +YFGYGNRSKE+CE + D + VAGK +FC +G + Y EV
Sbjct: 366 SVYPENLLISNVSLYFGYGNRSKELCEYGALDPEDVAGKIVFCDIPESGGIQSY----EV 421
Query: 428 RKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILG 487
AAGAIFS+DS+ P F+MP+VAV+ KDG+LVK YII N V IKFQIT+LG
Sbjct: 422 GGVEAAGAIFSSDSQNSFWPSDFDMPYVAVSPKDGDLVKDYIIKSQNPVVDIKFQITVLG 481
Query: 488 TKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLS 547
KPAPQVA FSSRGP R+P ILKPD+LAPGV ILAAW PN QPIRD+YLL+DY LLS
Sbjct: 482 AKPAPQVAEFSSRGPGSRAPMILKPDVLAPGVHILAAWAPNRAIQPIRDEYLLSDYGLLS 541
Query: 548 GTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDF 607
GTSM+ PHA +AAL+KA H DWS AAIRSA+MTTA +LDN G I D +TGVAGTPLDF
Sbjct: 542 GTSMASPHAVGVAALLKAAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDF 601
Query: 608 GAGHINPNKAMDPGLV-----------------------VLTGTSDFTCQYANLDLNYPS 644
GAGHINPN AMDPGLV ++T S F+C ANLDLNYPS
Sbjct: 602 GAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPS 661
Query: 645 FIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFS 704
F+++LNNTNT S+TFKRVLTNV DT S Y A+VK P+GMKV V P+T+SF G+YSKAEF+
Sbjct: 662 FMVLLNNTNTTSYTFKRVLTNVEDTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFN 721
Query: 705 LTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
+TV INLG A P+S+++GN+GYLTW +VNG H+VRSPIVSA A
Sbjct: 722 MTVEINLGDA-GPQSDYIGNYGYLTWREVNGTHVVRSPIVSAIA 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795298|emb|CAN64996.1| hypothetical protein VITISV_001780 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/764 (63%), Positives = 588/764 (76%), Gaps = 34/764 (4%)
Query: 11 ILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDA 70
+L L L + S M+GD +YIIHMDK+AMP FS HH WYMS LSS+SS D G
Sbjct: 9 LLFLLLVPVISISTCMAGDVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSISSPD---GSL 65
Query: 71 PTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGV 130
PTHLYTYNHV+DGFSAV+SK L+QL+KMPGH ATY +SFG LHTT +P+FLGL+K++G
Sbjct: 66 PTHLYTYNHVLDGFSAVMSKAHLDQLEKMPGHLATYPDSFGKLHTTHSPKFLGLEKNSGA 125
Query: 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGA 190
WP FG D+I+ ILDTG+WPES+S+ D+GM PVP+RWRGACE GVEF +S+CNRKLIGA
Sbjct: 126 WPEGKFGEDMIIAILDTGVWPESESFRDKGMGPVPKRWRGACESGVEFKSSYCNRKLIGA 185
Query: 191 RSFSKGIRQNGLNISTT-DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
RSFS+G+++ GLN+S DDYDSPRDF GHGTHTSST GS V+ ++FGYA+GTAIG++
Sbjct: 186 RSFSEGLKRRGLNVSAPPDDYDSPRDFHGHGTHTSSTAAGSPVRGANYFGYAEGTAIGIS 245
Query: 250 PMARIAMYKVLFSND--NLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIG 307
P AR+AMYKV+F +D + AA +D LAGMDQAIADGVD+MSLSL F ETTF++NPIA+G
Sbjct: 246 PKARLAMYKVIFLSDLRDADAAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIALG 305
Query: 308 AFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367
AF+A+++GIFV+CSAGNSGP Y++ NGAPWIT +GAGT+DR++AA V LGN TV GK
Sbjct: 306 AFSAMEKGIFVSCSAGNSGPDAYTMFNGAPWITTIGAGTIDRDYAADVKLGNGIFTVRGK 365
Query: 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEV 427
SVYPENL +S +YFGYGNRSKE+CE + D + VAGK +FC +G + Y EV
Sbjct: 366 SVYPENLLISNVSLYFGYGNRSKELCEYGALDPEDVAGKIVFCDIPESGGIQSY----EV 421
Query: 428 RKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILG 487
AAGAIFS+DS+ P F+MP+VAV+ KDG+LVK YII N V IKFQIT+LG
Sbjct: 422 GGVEAAGAIFSSDSQNSFWPSDFDMPYVAVSPKDGDLVKDYIIKSQNPVVDIKFQITVLG 481
Query: 488 TKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLS 547
KPAPQVA FSSRGP R+P ILKPD+LAPGV ILAAW PN QPIRD+YLL+DY LLS
Sbjct: 482 AKPAPQVAEFSSRGPGSRAPMILKPDVLAPGVHILAAWAPNRAIQPIRDEYLLSDYGLLS 541
Query: 548 GTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDF 607
GTSM+ PHA +AAL+KA H DWS AAIRSA+MTTA +LDN G I D +TGVAGTPLDF
Sbjct: 542 GTSMASPHAVGVAALLKAAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDF 601
Query: 608 GAGHINPNKAMDPGLV-----------------------VLTGTSDFTCQYANLDLNYPS 644
GAGHINPN AMDPGLV ++T S F+C ANLDLNYPS
Sbjct: 602 GAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPS 661
Query: 645 FIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFS 704
F+++LNNTNT S+TFKRVLTNV +T S Y A+VK P+GMKV V P+T+SF G+YSKAEF+
Sbjct: 662 FMVLLNNTNTTSYTFKRVLTNVENTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFN 721
Query: 705 LTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
+TV INLG A P+S+++GN GYLTW +VNG H+VRSPIVSA A
Sbjct: 722 MTVEINLGDA-XPQSDYIGNXGYLTWREVNGTHVVRSPIVSAIA 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428838|ref|XP_002282333.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/755 (64%), Positives = 586/755 (77%), Gaps = 32/755 (4%)
Query: 19 SYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYN 78
S A S SM+ D TYIIHMDK+ MP FS HH WY+S+LSS+SSSD G PTHLYTYN
Sbjct: 17 SIAMSASMAEDLGTYIIHMDKSTMPMTFSSHHDWYLSMLSSMSSSD---GVHPTHLYTYN 73
Query: 79 HVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHA-GVWPAAGFG 137
HV+DGFSAVLS+ L+QL+KMPG A + ++FG HTTR+P FLGL K+A G WP FG
Sbjct: 74 HVLDGFSAVLSREHLDQLEKMPGFLAIHADTFGRFHTTRSPTFLGLDKNAAGSWPEGKFG 133
Query: 138 SDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGI 197
D+I+GI+DTGIWPES+S+ D+GM PVP+RWRGACE GVEFN+S+CNRKLIGARSFSKG+
Sbjct: 134 EDVIIGIIDTGIWPESESFKDKGMGPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGL 193
Query: 198 RQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMY 257
+Q GL IST+DDYDSPRDFFGHGTHT+ST GS V+D ++FGYAKGTAIG+AP AR+A Y
Sbjct: 194 KQQGLIISTSDDYDSPRDFFGHGTHTASTAAGSPVRDANYFGYAKGTAIGIAPKARLAAY 253
Query: 258 KVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIF 317
KVLF+ND+ +A +D LAGMDQAIADGVD+MSLSL F ETTF++NPIA+GAFAA+++GIF
Sbjct: 254 KVLFTNDSDISAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFAAMEKGIF 313
Query: 318 VACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377
V+CSAGNSGP Y++ NGAPWIT +GAGT+DR++AA VT G LT+ G+SVYPEN+ VS
Sbjct: 314 VSCSAGNSGPEGYTMLNGAPWITTIGAGTIDRDYAADVTFGGGILTIRGRSVYPENVLVS 373
Query: 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIF 437
+YFG+GNRSKE+CE + D K VAGK +FC F+ +G V+ Q+ EV ++GA GAI
Sbjct: 374 NVSLYFGHGNRSKELCEDFALDPKDVAGKIVFCYFNQSGGVS---QVREVDRAGAKGAII 430
Query: 438 SADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANF 497
S+DS P F +P V V KDG+LVK YII N V +KF IT+LG+KPAPQVA F
Sbjct: 431 SSDSEFFNFPSFFFIPLVVVTPKDGDLVKDYIIKSENPVVDVKFLITVLGSKPAPQVAFF 490
Query: 498 SSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAA 557
SSRGP+ R+P ILKPD+LAPGV+ILAAW P + D+ LLTDYTLLSGTSMS PHA
Sbjct: 491 SSRGPNNRAPMILKPDVLAPGVNILAAWAPKVALTRVGDNRLLTDYTLLSGTSMSSPHAV 550
Query: 558 AIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKA 617
+AAL+K+ H DWSSAAIRSALMTTA +LDN G I D TGVA TPLDFGAGHINPN A
Sbjct: 551 GVAALLKSAHPDWSSAAIRSALMTTAYLLDNTIGSIIDMDTGVAATPLDFGAGHINPNMA 610
Query: 618 MDPGLV-----------------------VLTGTSDFTCQYANLDLNYPSFIIIL-NNTN 653
MDPGL+ +++ S FTC ANLDLNYPSFI++L NNTN
Sbjct: 611 MDPGLIYDIEVQDYINFLCGLNYTSKQIKIISRRSKFTCDQANLDLNYPSFIVLLNNNTN 670
Query: 654 TASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGS 713
T S+TFKRVLTNV D+ S Y A+VK P+GMKV VQP+ + FAGKYSKAEF++TV INLG
Sbjct: 671 TTSYTFKRVLTNVVDSPSVYRASVKQPSGMKVNVQPSMVFFAGKYSKAEFNMTVEINLGY 730
Query: 714 AVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
A P+S ++GNFGYLTW++VNG H+V+SPIVSAFA
Sbjct: 731 A-RPQSEYIGNFGYLTWWEVNGTHVVKSPIVSAFA 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801126|emb|CAN68827.1| hypothetical protein VITISV_029978 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/755 (64%), Positives = 585/755 (77%), Gaps = 32/755 (4%)
Query: 19 SYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYN 78
S A S SM+ D TYIIHMDK+ MP FS HH WY+S+LSS+SSSD G PTHLYTYN
Sbjct: 17 SIAMSASMAEDLGTYIIHMDKSTMPMTFSSHHDWYLSMLSSMSSSD---GVHPTHLYTYN 73
Query: 79 HVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHA-GVWPAAGFG 137
HV+DGFSAVLS+ L+QL+KMPG A + ++FG HTTR+P FLGL K+A G WP FG
Sbjct: 74 HVLDGFSAVLSREHLDQLEKMPGFLAIHADTFGRFHTTRSPTFLGLDKNAAGSWPEGKFG 133
Query: 138 SDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGI 197
D+I+GI+DTGIWPES+S+ D+GM PVP+RWRGACE GVEFN+S+CNRKLIGARSFSKG+
Sbjct: 134 EDVIIGIIDTGIWPESESFKDKGMGPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGL 193
Query: 198 RQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMY 257
+Q GL IST+DDYDSPRDFFGHGTHT+ST GS V+D ++FGYAKGTAIG+AP AR+A Y
Sbjct: 194 KQQGLIISTSDDYDSPRDFFGHGTHTASTAAGSPVRDANYFGYAKGTAIGIAPKARLAAY 253
Query: 258 KVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIF 317
KVLF+ND +A +D LAGMDQAIADGVD+MSLSL F ETTF++NPIA+GAFAA+++GIF
Sbjct: 254 KVLFTNDTDISAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFAAMEKGIF 313
Query: 318 VACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377
V+CSAGNSGP Y++ NGAPWIT +GAGT+DR++AA VT G LT+ G+SVYPEN+ VS
Sbjct: 314 VSCSAGNSGPEGYTMLNGAPWITTIGAGTIDRDYAADVTFGGGILTIRGRSVYPENVLVS 373
Query: 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIF 437
+YFG+GNRSKE+CE + D K VAGK +FC F+ +G V+ Q+ EV ++GA GAI
Sbjct: 374 NVSLYFGHGNRSKELCEDFALDPKDVAGKIVFCYFNQSGGVS---QVREVDRAGAKGAII 430
Query: 438 SADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANF 497
S+DS P F +P V V KDG+LVK YII N V +KF IT+LG+KPAPQVA F
Sbjct: 431 SSDSEFFNFPSFFFIPLVVVTPKDGDLVKDYIIKSENPVVDVKFLITVLGSKPAPQVAFF 490
Query: 498 SSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAA 557
SSRGP+ R+P ILKPD+LAPGV+ILAAW P + D+ LLTDYTLLSGTSMS PHA
Sbjct: 491 SSRGPNNRAPMILKPDVLAPGVNILAAWAPKVALTRVGDNRLLTDYTLLSGTSMSSPHAV 550
Query: 558 AIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKA 617
+AAL+K+ H DWSSAAIRSALMTTA +LDN G I D TGVA TPLDFGAGHINPN A
Sbjct: 551 GVAALLKSAHPDWSSAAIRSALMTTAYLLDNTIGSIIDMDTGVAATPLDFGAGHINPNMA 610
Query: 618 MDPGLV-----------------------VLTGTSDFTCQYANLDLNYPSFIIIL-NNTN 653
MDPGL+ +++ S FTC ANLDLNYPSFI++L NNTN
Sbjct: 611 MDPGLIYDIEVQDYINFLCGLNYTSKQIKIISRRSKFTCDQANLDLNYPSFIVLLNNNTN 670
Query: 654 TASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGS 713
T S+TFKRVLTNV D+ S Y A+VK P+GMKV VQP+ + FAGKYSKAEF++TV INLG
Sbjct: 671 TTSYTFKRVLTNVVDSPSVYRASVKQPSGMKVNVQPSMVFFAGKYSKAEFNMTVEINLGY 730
Query: 714 AVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
A P+S ++GNFGYLTW++VNG H+V+SPIVSAFA
Sbjct: 731 A-RPQSEYIGNFGYLTWWEVNGTHVVKSPIVSAFA 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741264|emb|CBI32395.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/753 (56%), Positives = 517/753 (68%), Gaps = 110/753 (14%)
Query: 19 SYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYN 78
S T+ SMS D +TYI+HMDK+AMP PFS HH WY+S LSS S D G PTHLYTYN
Sbjct: 17 STVTTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPD---GILPTHLYTYN 73
Query: 79 HVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVWPAAGFGS 138
HV+DGFSAVLS++ L+QL+KM GH ATY E+FG +HTT TP+FLGL+ + G WP FG
Sbjct: 74 HVLDGFSAVLSQSHLDQLEKMSGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGE 133
Query: 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIR 198
D+++ ++
Sbjct: 134 DMVIA-----------------------------------------------------LK 140
Query: 199 QNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYK 258
Q GLNIST DDYDSPRDF+GHGTHTSST GS V D ++FGYAKGTA G+AP AR+AMYK
Sbjct: 141 QRGLNISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYK 200
Query: 259 VLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFV 318
VLF ND +A +D LAG+DQAIADGVD+MSLSL F ETTF+ENPIA+GAFAA+++GIFV
Sbjct: 201 VLFYNDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFV 260
Query: 319 ACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSR 378
+CSAGNSGP Y+I NGAPWIT +GAGT+D ++AA V+LGN L + GKSVYPE+L +S+
Sbjct: 261 SCSAGNSGPHGYTIFNGAPWITTIGAGTIDLDYAADVSLGNGILNIRGKSVYPEDLLISQ 320
Query: 379 EPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438
P+YFG+GNRSKE+CE N+ D K AGK +FC F +G + Q +E+ + GAAGAIFS
Sbjct: 321 VPLYFGHGNRSKELCEDNAIDPKDAAGKIVFCDFSESGGI----QSDEMERVGAAGAIFS 376
Query: 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFS 498
DS LSP F MPFVAV+ KDG+LVK YII N V IKFQIT+LG KPAP VA FS
Sbjct: 377 TDSGIFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFS 436
Query: 499 SRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAA 558
SRGPS + PI D YLLT+Y LLSGTSM+ PHA
Sbjct: 437 SRGPSRIT--------------------------PIGDYYLLTNYALLSGTSMASPHAVG 470
Query: 559 IAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAM 618
+AAL+K+ H DWS AA+RSA+MTTA +LDN G I D +TGVAGTPLDFGAGHINPN AM
Sbjct: 471 VAALLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAM 530
Query: 619 DPGLV-----------------------VLTGTSDFTCQYANLDLNYPSFIIILNNTNTA 655
DPGLV ++T S F+C ANLDLNYPSF+++LNNTNT
Sbjct: 531 DPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTT 590
Query: 656 SFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAV 715
S+TFKRVLTNV +T S Y A+VK P+GMKV VQP+ +SFAGKYSKAEF++TV INLG A
Sbjct: 591 SYTFKRVLTNVENTHSVYHASVKLPSGMKVSVQPSVVSFAGKYSKAEFNMTVEINLGDA- 649
Query: 716 SPKSNFLGNFGYLTWYDVNGKHLVRSPIVSAFA 748
P+S+++GNFGYLTW++ NG H+V SPIVSA A
Sbjct: 650 RPQSDYIGNFGYLTWWEANGTHVVSSPIVSAIA 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | ||||||
| UNIPROTKB|Q0JD53 | 777 | Os04g0430700 "Os04g0430700 pro | 0.831 | 0.808 | 0.498 | 9.4e-200 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.827 | 0.818 | 0.389 | 1.6e-132 | |
| UNIPROTKB|Q69P78 | 770 | OJ1344_B01.33 "Putative serine | 0.852 | 0.836 | 0.389 | 4.2e-132 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.798 | 0.778 | 0.406 | 7.9e-129 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.825 | 0.814 | 0.402 | 2.1e-128 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.814 | 0.815 | 0.397 | 8e-127 | |
| UNIPROTKB|Q6I5K9 | 761 | OSJNBb0088F07.10 "Putative sub | 0.711 | 0.705 | 0.426 | 1.5e-125 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.899 | 0.888 | 0.392 | 9.2e-123 | |
| TAIR|locus:2025457 | 774 | SBTI1.1 "AT1G01900" [Arabidops | 0.835 | 0.815 | 0.378 | 1.3e-122 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.953 | 0.923 | 0.375 | 6.5e-122 |
| UNIPROTKB|Q0JD53 Os04g0430700 "Os04g0430700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1628 (578.1 bits), Expect = 9.4e-200, Sum P(2) = 9.4e-200
Identities = 319/640 (49%), Positives = 411/640 (64%)
Query: 12 LLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXXXXXXXAP 71
L+ F+ A + + DR+ Y++ MD +AMPAPF+ H WY SV A
Sbjct: 9 LVAFMAAVAAAAAAAGDDRRPYVVRMDVSAMPAPFATHDGWYRSVLSSASARDAAAAPAA 68
Query: 72 THLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVW 131
HLYTY+H M+GFSAVL+ Q+E++++ GH A + E++ LHTTRTP FLGL AG W
Sbjct: 69 EHLYTYSHAMNGFSAVLTARQVEEIRRADGHVAVFPETYARLHTTRTPAFLGLSAGAGAW 128
Query: 132 PAAGFGSDIIVGILDTGIWPESKSYDDRGMP-PVPERWRGACEVGVEFNTSHCNRKLIGA 190
PA+ +G+D++VGI+DTG+WPES S+ D G+ PVP RW+GACE G F S CNRKL+GA
Sbjct: 129 PASRYGADVVVGIVDTGVWPESASFSDAGVAAPVPARWKGACEAGASFRPSMCNRKLVGA 188
Query: 191 RSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGTAIGVAP 250
RSFSKG+RQ GLNIS DDYDSPRD++ V +FGYA GTA GVAP
Sbjct: 189 RSFSKGLRQRGLNISD-DDYDSPRDYYGHGSHTSSTAAGAAVPGASYFGYANGTATGVAP 247
Query: 251 MARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFA 310
MAR+AMYK +FS D L +A TDVLA MDQAIADGVD+MSLSL FPE+ +D N +AIGAFA
Sbjct: 248 MARVAMYKAVFSADTLESASTDVLAAMDQAIADGVDVMSLSLGFPESPYDTNVVAIGAFA 307
Query: 311 ALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLG---NEELTVIGK 367
A++RGI V CSAGN G Y++ NGAPWIT VGA T+DR F A VTLG +++G+
Sbjct: 308 AVRRGILVTCSAGNDGSDSYTVLNGAPWITTVGASTIDRAFTATVTLGAGAGGARSIVGR 367
Query: 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEV 427
SVYP + +Y+G GNR+KE CE S K V GKY+FC G +++Q+ EV
Sbjct: 368 SVYPGRVPAGAAALYYGRGNRTKERCESGSLSRKDVRGKYVFCNAGEGG---IHEQMYEV 424
Query: 428 RKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILG 487
+ +G G I +++ ++ + P + P V V DG +++Y S++F T LG
Sbjct: 425 QSNGGRGVIAASNMKEIMDPSDYVTPVVLVTPSDGAAIQRYATAAAAPRASVRFAGTELG 484
Query: 488 TKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXX- 546
KPAP VA FSSRGPS SP ILKPD++APGVDILAAWVPN +
Sbjct: 485 VKPAPAVAYFSSRGPSPVSPAILKPDVVAPGVDILAAWVPNKEVMELDGGETKLYTNYML 544
Query: 547 -SGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGM-ITDKSTGVAGTP 604
SGTSM+ PH A +AAL+++ H DWS AA+RSA+MTTA V DNA + G GTP
Sbjct: 545 VSGTSMASPHVAGVAALLRSAHPDWSPAAVRSAMMTTAYVKDNADDADLVSMPGGSPGTP 604
Query: 605 LDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPS 644
LD+G+GH++PN+A DPGLV D+ +L Y S
Sbjct: 605 LDYGSGHVSPNQATDPGLVYDITADDYVAFLCG-ELRYTS 643
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 1.6e-132, Sum P(2) = 1.6e-132
Identities = 254/652 (38%), Positives = 369/652 (56%)
Query: 10 MILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXXXXXXX 69
++LLLFL + S + S KT+I +D +MP+ F H+HWY +
Sbjct: 6 IVLLLFLSFPFI-SFAASQAAKTFIFRIDGGSMPSIFPTHYHWYSTEFAEESRI------ 58
Query: 70 APTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAG 129
++ Y+ V GFSAV++ ++ + L+ P A + + LHTTR+PQFLGL+ G
Sbjct: 59 ----VHVYHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLGLQNQKG 114
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
+W + +GSD+I+G+ DTGIWPE +S+ D + P+P+RWRG CE G F+ +CNRK+IG
Sbjct: 115 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGARFSPRNCNRKIIG 174
Query: 190 ARSFSKGIRQNGLN-ISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGTAIGV 248
AR F+KG + + I+ T ++ SPRD GYA G A GV
Sbjct: 175 ARFFAKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYASGVAKGV 234
Query: 249 APMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE---TTFDENPIA 305
AP ARIA YKV + + ++D+LA D A+ DGVD++S+S+ + + + +PIA
Sbjct: 235 APKARIAAYKVCWKDSG--CLDSDILAAFDAAVRDGVDVISISIGGGDGITSPYYLDPIA 292
Query: 306 IGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVI 365
IG++ A +GIFV+ SAGN GP S+ N APW+T VGA T+DR F A LG+ +
Sbjct: 293 IGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAILGDGH-RLR 351
Query: 366 GKSVYPENLFVSRE-PI-YFGY-GNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQ 422
G S+Y R P+ Y G G S +C N+ D K V GK + C D + V +
Sbjct: 352 GVSLYAGVPLNGRMFPVVYPGKSGMSSASLCMENTLDPKQVRGKIVIC--DRGSSPRVAK 409
Query: 423 QLEEVRKSGAAGAIFS--ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIK 480
L V+K+G G I + A + + L + +P AV +G+ +K Y + N SI
Sbjct: 410 GLV-VKKAGGVGMILANGASNGEGLVGDAHLIPACAVGSNEGDRIKAYASSHPNPIASID 468
Query: 481 FQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXX 540
F+ TI+G KPAP +A+FS RGP+ SP ILKPD++APGV+ILAAW +
Sbjct: 469 FRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTDAVGPTGLPSDPRK 528
Query: 541 XXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGV 600
SGTSM+CPH + AAL+K+ H DWS A IRSA+MTT +++DN+ + D+STG
Sbjct: 529 TEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSNRSLIDESTGK 588
Query: 601 AGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFIIILNNT 652
+ TP D+G+GH+N +AM+PGLV D+ ++ P I ++ T
Sbjct: 589 SATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYG-PKTIQVITRT 639
|
|
| UNIPROTKB|Q69P78 OJ1344_B01.33 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 264/678 (38%), Positives = 376/678 (55%)
Query: 6 PFMFMILLLFLYVSYATSLSMSGD-RKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXX 64
PF+ + +L + S +S +GD TYI++++ A PAP++ H HW+ +
Sbjct: 5 PFLLALAVLVVVSSCVRLVSGAGDGAATYIVYLNPALKPAPYATHLHWHHA------HLA 58
Query: 65 XXXXXAPTHL-YTYNHVM-DGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFL 122
HL Y+Y F+A L + + L+ P + + + LHTTR+P FL
Sbjct: 59 SLSVDPSRHLLYSYTSAAPSAFAARLLPSHVAALRGHPAVASVHEDVILPLHTTRSPLFL 118
Query: 123 GLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGV-EFNTS 181
L + A G +D+I+G+LDTG+WPES S+ D GM PVP RWRG+CE +F +S
Sbjct: 119 HLPPYDAP-DADGASTDVIIGVLDTGVWPESPSFGDVGMGPVPSRWRGSCETNATDFPSS 177
Query: 182 HCNRKLIGARSFSKGIRQ----NGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDH 237
CNRKLIGAR+F +G NG ++S ++ SPRD V D
Sbjct: 178 MCNRKLIGARAFFRGYGAGGGGNGSHVSL--EFSSPRDHDGHGTHTASTAAGAVVADAGL 235
Query: 238 FGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET 297
GYA+GTA G+AP AR+A YKV + +D+LAGM++AI DGVD++SLSL
Sbjct: 236 LGYAEGTARGMAPGARVAAYKVCWRQ---GCFSSDILAGMEKAIDDGVDVLSLSLGGGAF 292
Query: 298 TFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTL 357
+PIA+GA AA +RGI VACSAGNSGP P S+ N APW+ VGAGT+DR F A+ L
Sbjct: 293 PLSRDPIAVGALAATRRGIVVACSAGNSGPSPSSLVNTAPWVITVGAGTLDRNFPAYAEL 352
Query: 358 GNEELTVIGKSVYP-ENLFVSREPIYFGYGNRS----KEICEPNSTDSKAVAGKYIFCAF 412
GN E T G S+Y + L + P+ + G R+ ++C + D+ AV GK + C
Sbjct: 353 GNGE-THAGMSLYSGDGLGDEKLPVVYNKGIRAGSNASKLCMEGTLDAAAVKGKVVLC-- 409
Query: 413 DYNGNVTVYQQLEEVRKSGAAGAIFS--ADSRQHLSPEVFNMPFVAVNLKDGELVKKYII 470
D GN V + L V+++G G + + A S + + + +P VAV K G+ +++Y+
Sbjct: 410 DRGGNSRVEKGLV-VKQAGGVGMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVE 468
Query: 471 NVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNP 530
+ +A V + F T L +PAP VA FSSRGP+ + +LKPD++ PGV+ILA W +
Sbjct: 469 SDADAEVGLTFAGTALDVRPAPVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVG 528
Query: 531 WQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
+ SGTSMSCPH + +AA VKA H DWS +AI+SALMTTA +DN
Sbjct: 529 PTGLTVDERRSPFNILSGTSMSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTG 588
Query: 591 GMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFIIILN 650
I D ++ TP GAGH++P KA+ PGLV T D+ ++ + P I
Sbjct: 589 SPIVDAASNTTATPWSIGAGHVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAI-- 646
Query: 651 NTNTASFTFKRVLTNVAD 668
T + T +R L++ D
Sbjct: 647 -TAAPNVTCQRKLSSPGD 663
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 7.9e-129, Sum P(2) = 7.9e-129
Identities = 258/634 (40%), Positives = 358/634 (56%)
Query: 7 FMFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXXXX 66
F F L L +S +S + S + TYI+H+D A P+ F H HWY S
Sbjct: 3 FFFYFFFL-LTLSSPSSSASSSNSLTYIVHVDHEAKPSIFPTHFHWYTS------SLASL 55
Query: 67 XXXAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKK 126
P+ ++TY+ V GFSA L+ QL P + E HLHTTR+P+FLGL+
Sbjct: 56 TSSPPSIIHTYDTVFHGFSARLTSQDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRS 115
Query: 127 --HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCN 184
AG+ + FGSD+++G++DTG+WPE S+DDRG+ PVP +W+G C +F S CN
Sbjct: 116 TDKAGLLEESDFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACN 175
Query: 185 RKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGT 244
RKL+GAR F G ++ T ++ SPRD V GYA G
Sbjct: 176 RKLVGARFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGV 235
Query: 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPI 304
A G+AP AR+A YKV + N ++D+LA D A+ADGVD++SLS+ + + I
Sbjct: 236 AAGMAPKARLAAYKVCW---NSGCYDSDILAAFDTAVADGVDVISLSVGGVVVPYYLDAI 292
Query: 305 AIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364
AIGAF A+ RGIFV+ SAGN GP ++ N APW+T VGAGT+DR+F A+V LGN ++ +
Sbjct: 293 AIGAFGAIDRGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKM-I 351
Query: 365 IGKSVYP-ENLFVSRE-PIYFG---YGNR--SKEICEPNSTDSKAVAGKYIFCAFDYNGN 417
G SVY L R P+ +G G S +C S D V GK + C N
Sbjct: 352 SGVSVYGGPGLDPGRMYPLVYGGSLLGGDGYSSSLCLEGSLDPNLVKGKIVLCDRGINSR 411
Query: 418 VTVYQQLEEVRKSGAAGAIFSAD--SRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNA 475
T + E VRK+G G I + + L + +P +V G+ +++YI +
Sbjct: 412 AT---KGEIVRKNGGLGMIIANGVFDGEGLVADCHVLPATSVGASGGDEIRRYISESSKS 468
Query: 476 ------TVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529
T +I F+ T LG +PAP VA+FS+RGP+ +P ILKPD++APG++ILAAW
Sbjct: 469 RSSKHPTATIVFKGTRLGIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRI 528
Query: 530 PWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNA 589
+ SGTSM+CPH + +AAL+KA H DWS AAIRSAL+TTA +DN+
Sbjct: 529 GPSGVTSDNRRTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNS 588
Query: 590 YGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLV 623
+ D+STG + +D+G+GH++P KAMDPGLV
Sbjct: 589 GEPMMDESTGNTSSVMDYGSGHVHPTKAMDPGLV 622
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.1e-128, Sum P(2) = 2.1e-128
Identities = 262/651 (40%), Positives = 368/651 (56%)
Query: 8 MFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHH-HWYMSVXXXXXXXXXX 66
M +LL+ + V+ A + + +R TYI+HM K+AMPA + H WY
Sbjct: 1 MMRLLLVAVAVAMAAVVVAAEERATYIVHMAKSAMPAEYGDDHGEWY-------GASLRS 53
Query: 67 XXXAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKK 126
A LY Y+ V+ GFSA L+ + + M G A E+ LHTTRTP+FLG+
Sbjct: 54 VSGAGKMLYAYDTVLHGFSARLTAREARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAG 113
Query: 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRK 186
+ G++P +G D++VG+LDTG+WPES+SYDD G+ VP W+G C G FN+S CNRK
Sbjct: 114 NDGLFPQSGTAGDVVVGVLDTGVWPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRK 173
Query: 187 LIGARSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGTAI 246
L+GAR F++G + TT + SPRD V G+A GTA
Sbjct: 174 LVGARFFNRGYEAAMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTAR 233
Query: 247 GVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAI 306
G+AP AR+A+YKV + +D+LAGMD A+ADG ++SLSL + + +AI
Sbjct: 234 GMAPRARVAVYKVCWLG---GCFSSDILAGMDAAVADGCGVLSLSLGGGAADYARDSVAI 290
Query: 307 GAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIG 366
GAFAA+++ + V+CSAGN+GP ++ N APWIT VGAGT+DR+F A+V+LGN + G
Sbjct: 291 GAFAAMEQNVLVSCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSLGNGK-NYTG 349
Query: 367 KSVYPENLFVSRE-PIYFGYGNRSKE----ICEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421
S+Y S PI + N S +C P + + VAGK + C + V
Sbjct: 350 VSLYAGKALPSTPLPIVYA-ANASNSTAGNLCMPGTLTPEKVAGKIVVCDRGVSARV--- 405
Query: 422 QQLEEVRKSGAAGAIFS--ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSI 479
Q+ VR +G AG + S A + + L + +P V K+G +K Y+ + + T +I
Sbjct: 406 QKGFVVRDAGGAGMVLSNTATNGEELVADAHLLPAAGVGAKEGAAIKAYVASDPSPTATI 465
Query: 480 KFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXX 539
T + +P+P VA FSSRGP++ +P ILKPDI+APGV+ILAAW I
Sbjct: 466 VVAGTQVDVRPSPVVAAFSSRGPNMLTPEILKPDIIAPGVNILAAWTGKAGPTGIAADTR 525
Query: 540 XXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYG---MITDK 596
SGTSMSCPH + +AAL+++ H +WS AA+RSALMTTA G + D
Sbjct: 526 RVAFNIISGTSMSCPHVSGLAALLRSAHPEWSPAAVRSALMTTAYSTYAGAGDANPLLDA 585
Query: 597 STGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFII 647
+TG TP D+GAGH++P A+DPGLV GT+D+ + LNY S +I
Sbjct: 586 ATGAPATPFDYGAGHVDPASAVDPGLVYDLGTADYV-DFL-CALNYTSTMI 634
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 8.0e-127, Sum P(2) = 8.0e-127
Identities = 257/647 (39%), Positives = 356/647 (55%)
Query: 11 ILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXXXXXXXA 70
I+ FL++ T+ +KTYII ++ + P F HH WY S
Sbjct: 13 IITTFLFLLLHTTA-----KKTYIIRVNHSDKPESFLTHHDWYTSQLNSESSL------- 60
Query: 71 PTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLES-FGHLHTTRTPQFLGLKKHAG 129
LYTY GFSA L + + L E LHTTRTP+FLGL G
Sbjct: 61 ---LYTYTTSFHGFSAYLDSTEADSLLSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFG 117
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
V + +I+G+LDTG+WPES+S+DD MP +P +W+G CE G +F++ CN+KLIG
Sbjct: 118 VHDLGSSSNGVIIGVLDTGVWPESRSFDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIG 177
Query: 190 ARSFSKGIRQ-NGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGTAIGV 248
ARSFSKG + +G S+ + SPRD V++ GYA GTA G+
Sbjct: 178 ARSFSKGFQMASGGGFSSKRESVSPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGM 237
Query: 249 APMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGA 308
A AR+A YKV +S + D+LA MD+AI DGVD++SLSL + + IAIGA
Sbjct: 238 ATRARVATYKVCWSTGCFGS---DILAAMDRAILDGVDVLSLSLGGGSAPYYRDTIAIGA 294
Query: 309 FAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN-EELTVIGK 367
F+A++RG+FV+CSAGNSGP S+ N APW+ VGAGT+DR+F A LGN + LT G
Sbjct: 295 FSAMERGVFVSCSAGNSGPTRASVANVAPWVMTVGAGTLDRDFPAFANLGNGKRLT--GV 352
Query: 368 SVYPENLFVSREPIYFGY--GNRSKE-ICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQL 424
S+Y + + +P+ Y GN S +C P S DS V GK + C N V ++
Sbjct: 353 SLY-SGVGMGTKPLELVYNKGNSSSSNLCLPGSLDSSIVRGKIVVCDRGVNARV---EKG 408
Query: 425 EEVRKSGAAGAIFS--ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQ 482
VR +G G I + A S + L + +P +AV K G+L+++Y+ + T + F+
Sbjct: 409 AVVRDAGGLGMIMANTAASGEELVADSHLLPAIAVGKKTGDLLREYVKSDSKPTALLVFK 468
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXX 542
T+L KP+P VA FSSRGP+ +P ILKPD++ PGV+ILA W +
Sbjct: 469 GTVLDVKPSPVVAAFSSRGPNTVTPEILKPDVIGPGVNILAGWSDAIGPTGLDKDSRRTQ 528
Query: 543 XXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602
SGTSMSCPH + +A L+KA H +WS +AI+SALMTTA VLDN + D +
Sbjct: 529 FNIMSGTSMSCPHISGLAGLLKAAHPEWSPSAIKSALMTTAYVLDNTNAPLHDAADNSLS 588
Query: 603 TPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFIIIL 649
P G+GH++P KA+ PGLV T ++ +LD + I+
Sbjct: 589 NPYAHGSGHVDPQKALSPGLVYDISTEEYIRFLCSLDYTVDHIVAIV 635
|
|
| UNIPROTKB|Q6I5K9 OSJNBb0088F07.10 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 241/565 (42%), Positives = 324/565 (57%)
Query: 75 YTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLH--TTRTPQFLGLKKHAG-VW 131
Y Y++ M GF+A ++ ++LE+L+ G + Y + + TT TP+FLG+ +G +W
Sbjct: 73 YVYDNAMHGFAARVTADELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLW 132
Query: 132 PAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGAR 191
A+ +G D+IVG++DTG+WPES S+ D G+PPVP RW+G CE G F+ K+ +
Sbjct: 133 EASEYGEDVIVGVVDTGVWPESASFRDDGLPPVPARWKGYCESGTAFDAG----KVCNRK 188
Query: 192 SFSKGIRQNGLNIST--TDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGTAIGVA 249
GL +T T +SPRD V FGYA GTA G+A
Sbjct: 189 LVGARKFNKGLVAATNLTIAVNSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGMA 248
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309
P AR+AMYK L+ + D+LA +DQAIADGVD++SLSL + F +PIAIGAF
Sbjct: 249 PRARVAMYKALWDEGTYPS---DILAAIDQAIADGVDVLSLSLGLNDVPFYRDPIAIGAF 305
Query: 310 AALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369
AA++RG+FV+ SAGN GP P + NG PW V +GT DREFA V LG + TVIG+S+
Sbjct: 306 AAMQRGVFVSTSAGNDGPDPGFLHNGTPWTLTVASGTGDREFAGIVRLG-DGTTVIGQSM 364
Query: 370 YP--ENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEV 427
YP + S ++ G C+ N T K + C D +++ +V
Sbjct: 365 YPGSPSTIASSGFVFLG-------ACD-NDTALARNRDKVVLC--DATDSLSAAIFAVQV 414
Query: 428 RKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILG 487
K+ AG S DS + LS E F P V ++ +D + +YI SIKF +TILG
Sbjct: 415 AKA-RAGLFLSNDSFRELS-EHFTFPGVILSPQDAPALLQYIKRSRAPRASIKFGVTILG 472
Query: 488 TKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXS 547
TKPAP VA +SSRGPS P +LKPD+LAPG ILA+W N + S
Sbjct: 473 TKPAPVVATYSSRGPSASCPTVLKPDVLAPGSLILASWPENVSVSTVGSQQLYSRFNVIS 532
Query: 548 GTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG-TPLD 606
GTSMSCPHA+ +AAL+KA H +WS AA+RSA+MTTA +DN I D G TPL
Sbjct: 533 GTSMSCPHASGVAALIKAVHPEWSPAAVRSAMMTTASAVDNTNAPIKDMGRANRGATPLA 592
Query: 607 FGAGHINPNKAMDPGLVVLTGTSDF 631
G+GHI+PN+A+DPGLV G D+
Sbjct: 593 MGSGHIDPNRAVDPGLVYDAGADDY 617
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 278/709 (39%), Positives = 393/709 (55%)
Query: 25 SMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXXXXXXXAPTHLYTYNHVMDGF 84
++ G+R+TYI+HM ++A P F H WY + A T LYTY+ ++ G+
Sbjct: 29 AVGGERRTYIVHMSRSAKPNDFVEHGEWYAA-------SLQSVSDAATVLYTYDTIVHGY 81
Query: 85 SAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKHAGVWPAAGFGSDIIVGI 144
SA L++ + E L+ PG E LHTTRTP+FLGL + ++P + GSD+IVG+
Sbjct: 82 SARLTRAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFPQSNTGSDVIVGV 141
Query: 145 LDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNI 204
LDTG+WPE SYDD G+ PVP W+G CE G +FN S CN+KLIGAR F G +
Sbjct: 142 LDTGVWPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARFFLTGYEAAKGPV 201
Query: 205 STTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND 264
T+ + SPRD V+ D GYA GTA G+AP AR+A YKV +
Sbjct: 202 DTSKESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVATYKVCWVG- 260
Query: 265 NLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGN 324
+D+L M+ A+ DGVD++SLSL + + IA+GA++A++RGIFV+CSAGN
Sbjct: 261 --GCFSSDILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVSCSAGN 318
Query: 325 SGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYP-ENLFVSREP-IY 382
+GP ++ NGAPWIT VGAGT+DR+F AHV LGN + G S+Y + L + P IY
Sbjct: 319 AGPGSATLSNGAPWITTVGAGTLDRDFPAHVVLGNGK-NYSGVSLYSGKQLPTTPVPFIY 377
Query: 383 FGYGNRSK--EICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS-- 438
G + S +C S + VAGK + C D N V Q+ V+ +G AG + +
Sbjct: 378 AGNASNSSMGALCMSGSLIPEKVAGKIVLC--DRGTNARV-QKGFVVKDAGGAGMVLANT 434
Query: 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFS 498
A + + L + +P V K G+ ++ Y ++ N T SI F T +G +P+P VA FS
Sbjct: 435 AANGEELVADAHVLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPSPVVAAFS 494
Query: 499 SRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAA 558
SRGP+ +P ILKPD++APGV+ILAAW + + SGTSMSCPH +
Sbjct: 495 SRGPNTVTPGILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSMSCPHVSG 554
Query: 559 IAALVKATHRDWSSAAIRSALMTTA-DVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKA 617
+AAL++A H+DWS AAIRSALMTT+ + N G++ D +TG+ TPLD GAGH++P+KA
Sbjct: 555 LAALLRAAHQDWSPAAIRSALMTTSYNGYPNGNGIL-DVATGLPATPLDVGAGHVDPSKA 613
Query: 618 MDPGLVVLTGTSDFTCQYANLDLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAV 677
+DPGLV +D+ + P I L T + + R A +++
Sbjct: 614 VDPGLVYDIAAADYVDFLCAISYG-PMQIAALTKHTTDACSGNRTYAVTALNYPSFSVTF 672
Query: 678 KAPAGMKVKV-------QPATLSFAGKYSKAEFSLTVNINLGSAVSPKS 719
A G + QP T + +TV++ + KS
Sbjct: 673 PATGGTEKHTRTVTNVGQPGTYKVTASAAAGSTPVTVSVEPSTLTFTKS 721
|
|
| TAIR|locus:2025457 SBTI1.1 "AT1G01900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
Identities = 249/658 (37%), Positives = 361/658 (54%)
Query: 6 PFMFM-ILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSVXXXXXXXX 64
P MF ++F ++ + S ++S ++TY+IH + + H +
Sbjct: 17 PMMFFRSFIVFFFLIFFAS-NVSSRKQTYVIHTVTTS-----TKHIVTSLFNSLQTENIN 70
Query: 65 XXXXXAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGL 124
P Y Y + M GFSA L+ +QL+ ++ G + Y + LHTT + +FLGL
Sbjct: 71 DDDFSLPEIHYIYENAMSGFSATLTDDQLDTVKNTKGFISAYPDELLSLHTTYSHEFLGL 130
Query: 125 KKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCN 184
+ G+W SD+I+G++DTGI PE S+ D M PVP RWRG+C+ G F++S CN
Sbjct: 131 EFGIGLWNETSLSSDVIIGLVDTGISPEHVSFRDTHMTPVPSRWRGSCDEGTNFSSSECN 190
Query: 185 RKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQDVDHFGYAKGT 244
+K+IGA +F KG I+ T D+ S RD V ++FG AKG
Sbjct: 191 KKIIGASAFYKGYESIVGKINETTDFRSTRDAQGHGTHTASTAAGDIVPKANYFGQAKGL 250
Query: 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPI 304
A G+ +RIA YK ++ L A TDV+A +D+AI DGVD++SLSL F +PI
Sbjct: 251 ASGMRFTSRIAAYKACWA---LGCASTDVIAAIDRAILDGVDVISLSLGGSSRPFYVDPI 307
Query: 305 AIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364
AI F A+++ IFV+CSAGNSGP ++ NGAPW+ V A DR F A V +GN + ++
Sbjct: 308 AIAGFGAMQKNIFVSCSAGNSGPTASTVSNGAPWLMTVAASYTDRTFPAIVRIGNRK-SL 366
Query: 365 IGKSVYPENLFVSREPIYFGY--GNRSKEI-CEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421
+G S+Y + + P+ F G S + C +S + V GK + C +G
Sbjct: 367 VGSSLY-KGKSLKNLPLAFNRTAGEESGAVFCIRDSLKRELVEGKIVICLRGASGRTA-- 423
Query: 422 QQLEEVRKSGAAGAIF-SADSR-QHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSI 479
+ EEV++SG A + S ++ + L + +P V++ DG+ + Y+ NAT S+
Sbjct: 424 -KGEEVKRSGGAAMLLVSTEAEGEELLADPHVLPAVSLGFSDGKTLLNYLAGAANATASV 482
Query: 480 KFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXX 539
+F+ T G AP VA FSSRGPS+ P I KPDI APG++ILA W P + +R
Sbjct: 483 RFRGTAYGAT-APMVAAFSSRGPSVAGPEIAKPDIAAPGLNILAGWSPFSSPSLLRSDPR 541
Query: 540 XXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDK-ST 598
SGTSM+CPH + IAAL+K+ H DWS A I+SA+MTTA + DN I D+ +
Sbjct: 542 RVQFNIISGTSMACPHISGIAALIKSVHGDWSPAMIKSAIMTTARITDNRNRPIGDRGAA 601
Query: 599 GV--AGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSF-IIILNNTN 653
G A T FGAG+++P +A+DPGLV T T D+ Y LNY S I++ + TN
Sbjct: 602 GAESAATAFAFGAGNVDPTRAVDPGLVYDTSTVDYL-NYL-CSLNYTSERILLFSGTN 657
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| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 282/751 (37%), Positives = 411/751 (54%)
Query: 1 MANFNP----FMFMILLLFLYVSYATSLSMSGDRKTYIIHMDKAAMPAPFSHHHHWYMSV 56
MAN NP F+F+IL + L A + + +KTY+IHMDK+AMP P+++H WY S
Sbjct: 1 MANKNPLQKPFLFIILSINLIFLQAETTTQISTKKTYVIHMDKSAMPLPYTNHLQWYSSK 60
Query: 57 XXXXXXXXXXXXXAPTH--LYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESFGHLH 114
+ LYTY G +A L++ + E+L++ G A E+ LH
Sbjct: 61 INSVTQHKSQEEEGNNNRILYTYQTAFHGLAAQLTQEEAERLEEEDGVVAVIPETRYELH 120
Query: 115 TTRTPQFLGLKKHAG--VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGAC 172
TTR+P FLGL++ VW D++VG+LDTGIWPES+S++D GM PVP WRGAC
Sbjct: 121 TTRSPTFLGLERQESERVWAERVTDHDVVVGVLDTGIWPESESFNDTGMSPVPATWRGAC 180
Query: 173 EVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRV 232
E G F +CNRK++GAR F +G I +Y SPRD V
Sbjct: 181 ETGKRFLKRNCNRKIVGARVFYRGYEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPV 240
Query: 233 QDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL 292
+ + FG+A GTA G+A AR+A YKV + +D+L+ +DQA+ADGV ++S+SL
Sbjct: 241 KGANLFGFAYGTARGMAQKARVAAYKVCWVG---GCFSSDILSAVDQAVADGVQVLSISL 297
Query: 293 AFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
+T+ + ++I F A++ G+FV+CSAGN GP P S+ N +PWIT VGA T+DR+F
Sbjct: 298 GGGVSTYSRDSLSIATFGAMEMGVFVSCSAGNGGPDPISLTNVSPWITTVGASTMDRDFP 357
Query: 353 AHVTLGNEELTVIGKSVYPENLFVSRE---P-IYFGYGNRSKE---ICEPNSTDSKAVAG 405
A V +G T G S+Y + + P +Y G S + C + D + VAG
Sbjct: 358 ATVKIGTMR-TFKGVSLYKGRTVLPKNKQYPLVYLGRNASSPDPTSFCLDGALDRRHVAG 416
Query: 406 KYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS--ADSRQHLSPEVFNMPFVAVNLKDGE 463
K + C D G Q+ + V+++G G + + A + + L + +P VAV K+G+
Sbjct: 417 KIVIC--D-RGVTPRVQKGQVVKRAGGIGMVLTNTATNGEELVADSHMLPAVAVGEKEGK 473
Query: 464 LVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523
L+K+Y + AT S++ T +G KP+P VA FSSRGP+ S ILKPD+LAPGV+ILA
Sbjct: 474 LIKQYAMTSKKATASLEILGTRIGIKPSPVVAAFSSRGPNFLSLEILKPDLLAPGVNILA 533
Query: 524 AWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
AW + + SGTSMSCPH + +AAL+K+ H DWS AAI+SALMTTA
Sbjct: 534 AWTGDMAPSSLSSDPRRVKFNILSGTSMSCPHVSGVAALIKSRHPDWSPAAIKSALMTTA 593
Query: 584 DVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYP 643
V DN + +TD S +P D GAGHI+P +A DPGLV G ++ DL+
Sbjct: 594 YVHDNMFKPLTDASGAAPSSPYDHGAGHIDPLRATDPGLVYDIGPQEYFEFLCTQDLSPS 653
Query: 644 SFIIILNNTN-TASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAE 702
+ ++N T T + N+ A +A +K T++ G + +
Sbjct: 654 QLKVFTKHSNRTCKHTLAKNPGNL--NYPAISALFPENTHVKAMTLRRTVTNVGPHISS- 710
Query: 703 FSLTVNINLGSAVS--PKS-NFLGNFGYLTW 730
+ ++V+ G++V+ PK+ NF L++
Sbjct: 711 YKVSVSPFKGASVTVQPKTLNFTSKHQKLSY 741
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_IX000318 | hypothetical protein (758 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 755 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-102 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-29 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-21 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-19 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-17 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-16 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-15 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 4e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 7e-14 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 4e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-11 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 9e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-10 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-10 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-10 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 6e-09 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 4e-08 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 6e-08 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-07 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 4e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-06 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-06 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 5e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 6e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 7e-06 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 9e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 5e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-05 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 7e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 7e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 8e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 9e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 1e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 2e-04 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-04 | |
| pfam06280 | 110 | pfam06280, DUF1034, Fn3-like domain (DUF1034) | 4e-04 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 5e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 7e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.002 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-102
Identities = 119/238 (50%), Positives = 148/238 (62%), Gaps = 5/238 (2%)
Query: 112 HLHTTRTPQFLGLKKHAG--VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWR 169
LHTTR+P FLGL G + AA G II+G+LDTGIWPE S+ D G P P W
Sbjct: 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWP 61
Query: 170 GACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGG 229
G C G +FN CN KLIGAR FS G G ++ +Y SPRD+ GHGTHT+ST G
Sbjct: 62 GDCVTGEDFNPFSCNNKLIGARYFSDGYDAYG-GFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 230 SRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMS 289
+ V + G+A GTA GVAP ARIA+YKV + +D+LA +DQAIADGVD++S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVC--WPDGGCFGSDILAAIDQAIADGVDVIS 178
Query: 290 LSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTV 347
S+ E+PIAI A++ GIFVA SAGNSGP ++ N APW+T V A T+
Sbjct: 179 YSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 46/86 (53%), Positives = 55/86 (63%), Gaps = 10/86 (11%)
Query: 506 SPWI-------LKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAA 558
+PW+ LKPDI APGVDILAAW P D D+ +SGTSM+ PH A
Sbjct: 225 APWVTTVAASTLKPDIAAPGVDILAAWTPE---GADPGDARGEDFAFISGTSMASPHVAG 281
Query: 559 IAALVKATHRDWSSAAIRSALMTTAD 584
+AAL+K+ H DWS AAI+SALMTTA
Sbjct: 282 VAALLKSAHPDWSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-27
Identities = 57/150 (38%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 468 YIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVP 527
I VG +TV+ A V SSRGP S +KPDI+APGVDI++ P
Sbjct: 174 SAITVGASTVAD--------VAEADTVGPSSSRGPP-TSDSAIKPDIVAPGVDIMSTA-P 223
Query: 528 NNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587
+ T Y +SGTSM+ PH A AAL+K H DWS A I++ALM TA L
Sbjct: 224 GSG----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLY 273
Query: 588 NAYGMITDKSTGVAGTPLDFGAGHINPNKA 617
+ S GV GAG ++ +A
Sbjct: 274 D--------SDGVVYPVSRQGAGRVDALRA 295
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-21
Identities = 69/217 (31%), Positives = 91/217 (41%), Gaps = 40/217 (18%)
Query: 137 GSDIIVGILDTGIWPESKSYD--DRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFS 194
G + V ++DTGI Y D G P P N K+ G F
Sbjct: 1 GKGVKVAVIDTGI-----DYTHPDLGGPGFP------------------NDKVKGGYDFV 37
Query: 195 KGIRQNGLNISTTDDYD--SPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMA 252
S D GHGTH + I G G GT GVAP A
Sbjct: 38 DDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPKA 89
Query: 253 RIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAAL 312
+ YKVL + ++A ++QA+ DG+D+++LSL D+ P AI A+
Sbjct: 90 DLYAYKVLGPGG--SGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDD-PDAIAINNAV 146
Query: 313 KRGIFVACSAGNSGPRPYSIRN--GAPWITAVGAGTV 347
K G+ V +AGNSGP PY+I + AP VGA TV
Sbjct: 147 KAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 55/216 (25%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
G I V +LDTGI +D R +
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRIIRFAD------------------------------- 29
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
N +N TT P D GHGTH + I GS + G GVAP A +
Sbjct: 30 -FVNTVNGRTT-----PYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVG 76
Query: 257 YKVLFSNDNLAAAETDVLAGMDQAIAD----GVDIMSLSL-AFPETTFDENPIAIGAFAA 311
KVL +D+ + +E+D++AG+D + + + +++LSL A P+ ++ E+P+
Sbjct: 77 VKVL--DDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERL 134
Query: 312 LKRGIFVACSAGNSGPRPYSIR---NGAPWITAVGA 344
GI V +AGNSGP P +I N +P + VGA
Sbjct: 135 WDAGIVVVVAAGNSGPGPGTITSPGN-SPKVITVGA 169
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-17
Identities = 53/218 (24%), Positives = 81/218 (37%), Gaps = 49/218 (22%)
Query: 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199
+ V ++DTG+ P+ D G
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLF----------------------------------GGGDG 26
Query: 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKV 259
+ + P D GHGTH + I S G +GVAP A++ KV
Sbjct: 27 GNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKV 77
Query: 260 LFSNDNLAAAETDVLAGMDQAIAD-GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFV 318
L + + +++ D+ A +D A AD G D+++LSL P + +A K G+ V
Sbjct: 78 LDGDGSGSSS--DIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLV 135
Query: 319 ACSAGNSGPR---PYSIRNGAPWITAVGAGTVDREFAA 353
+AGN GP +P + AVGA D A+
Sbjct: 136 VAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPAS 173
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 484 TILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDY 543
+ A+ S S KPD+ APGVD+ +A N Y
Sbjct: 164 DAWFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGANG---------DGQY 213
Query: 544 TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584
T LSGTSM+ PH A +AAL+ A H D S I+ AL TA
Sbjct: 214 TRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
A+FSS GP + ++ APGVDIL+ Y DY LSGTSM+
Sbjct: 161 NRASFSSTGPEV--------ELAAPGVDILST-------------YPNNDYAYLSGTSMA 199
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTT 582
PH A +AALV + + ++A +R AL T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 25/137 (18%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
IT+ +A+FS+ G + KPDI+APG +IL++ + L
Sbjct: 166 ITVGAVTENGTIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGD----------LGG 212
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602
Y SGTSM+ P A AAL+ + + + +R+ L+TTA L M D+S
Sbjct: 213 YDSHSGTSMAAPLVAGAAALLLSANPSLTPETLRALLVTTATDLG---SMGLDRS----- 264
Query: 603 TPLDFGAGHINPNKAMD 619
FG G +N KA+
Sbjct: 265 ----FGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 6e-15
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 61/220 (27%)
Query: 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKL--IGARSFSKG 196
+ V ++DTGI ++SH + KL +G +F
Sbjct: 1 GVKVAVIDTGI-----------------------------DSSHPDLKLNIVGGANF--- 28
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
T DD + +D GHGTH + I D + G +GVAP A +
Sbjct: 29 ---------TGDDNNDYQDGNGHGTHVAGIIAA---LD-NGVG-----VVGVAPEADLYA 70
Query: 257 YKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF-AALKRG 315
KVL ND+ + +D++AG++ AI +G+DI+++SL P ++P A A G
Sbjct: 71 VKVL--NDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYAAG 124
Query: 316 IFVACSAGNSGP--RPYSIRNGAPWITAVGAGTVDREFAA 353
I V +AGNSG Y P + AVGA + A+
Sbjct: 125 ILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRAS 164
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-14
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 355 VTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSK---EICEPNSTDSKAVAGKYIFCA 411
VTLGN + T++G+S+YP NL P+ + N +C P S D V GK + C
Sbjct: 2 VTLGNGK-TIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC- 57
Query: 412 FDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHL--SPEVFNMPFVAVNLKDGELVKKYI 469
D GN + + + V+ +G AG I + D L + +P V V+ +DG + YI
Sbjct: 58 -DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
Query: 470 INVGNATVSI 479
+ N T +I
Sbjct: 117 NSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSC 553
++ FSSRGP+ +KPD++APG +I++ P Y +SGTSM+
Sbjct: 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSG----YFEMSGTSMAT 233
Query: 554 PHAAAIAALVKATHRDWSSAAIRSALMTTAD 584
PH + AL+ + + ++ L TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 50/144 (34%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNL 266
D GHGTH S TIGG G AKG IGVAP A + KVL D+
Sbjct: 33 RISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVL---DDG 80
Query: 267 AAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSG 326
+ + ++AGM+ A+ D++S+SL + D A+ A + +FV SAGN G
Sbjct: 81 GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVV-SAGNEG 139
Query: 327 PRPYSIRNGAPWITAVGAGTVDRE 350
A +VGA VDR+
Sbjct: 140 HGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 211 DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAE 270
D P D GHGTH + I + + F GVAP A + Y+V +
Sbjct: 62 DDPMDCQGHGTHVAGIIAAN--PNAYGF-------TGVAPEATLGAYRVF---GCSGSTT 109
Query: 271 TDVL-AGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPR- 328
D + A +A DG D+++ SL P + + E+P A+ A + G+ V +AGN G R
Sbjct: 110 EDTIIAAFLRAYEDGADVITASLGGP-SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERG 168
Query: 329 PYSIRNGAPWITAVGAGTVDREF 351
P+ + A + +VD F
Sbjct: 169 PFYASSPASGRGVIAVASVDSYF 191
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I++ T +A+FS+ G D+ APGVDIL+
Sbjct: 178 ISVAATDSNDALASFSNYGKK-------TVDLAAPGVDILSTSPGG-------------G 217
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584
Y +SGTSM+ PH A AAL+ + + + ++A I+ A++++AD
Sbjct: 218 YGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 484 TILGTKPAPQVANFSSRG--PSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLT 541
+ Q++ FSS G P L LKPDI APG +I + V +N
Sbjct: 224 KKVPNPNGGQMSGFSSWGPTPDLD----LKPDITAPGGNIYST-VNDN------------ 266
Query: 542 DYTLLSGTSMSCPHAAAIAALV----KATHRDWSSA----AIRSALMTTADVLDNAYGMI 593
Y +SGTSM+ PH A +ALV K + S +++ LM TA +
Sbjct: 267 TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATP------PL 320
Query: 594 TDKSTGVAGTPLDFGAGHINPNKAMD 619
+ T +P GAG I+ KA+
Sbjct: 321 DSEDTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-13
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 32 TYIIHMDK-AAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSK 90
TYI+ + A FS H W+ S + + LY+Y H +GF+A L++
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHASSKEEAAG--------ASILYSYKHGFNGFAAKLTE 52
Query: 91 NQLEQLQKMPG 101
+ E+L+K P
Sbjct: 53 EEAEKLRKHPD 63
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCP 554
+ FSS GP+ LKPD+ APG +IL+ + P Y +LSGTSM+ P
Sbjct: 189 SYFSSWGPTNE--LYLKPDVAAPGGNILSTY-PLA----------GGGYAVLSGTSMATP 235
Query: 555 HAAAIAALVKATHR-DWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHIN 613
+ A AAL+ S A +R L +TA L + G + GAG +N
Sbjct: 236 YVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG---TSALPDLAPVAQQGAGLVN 292
Query: 614 PNKA 617
KA
Sbjct: 293 AYKA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 467 KYIINVG---NATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523
K ++ VG N +VS VA+FSSRGP+ +KPD++APG IL+
Sbjct: 172 KNVLTVGASNNPSVSNGEGGLGQSDNS-DTVASFSSRGPTY--DGRIKPDLVAPGTGILS 228
Query: 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDW------------S 571
A D + YT SGTSM+ P A AAL+ R + S
Sbjct: 229 ARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALL----RQYFVDGYYPTKFNPS 280
Query: 572 SAAIRSALMTTAD 584
+A +++ L+ +A
Sbjct: 281 AALLKALLINSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 496 NFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPH 555
+ S S DI APG DIL++ Y LSGTSM+ P
Sbjct: 166 DRDGTPASPSSNGGAGVDIAAPGGDILSSPTTGG-----------GGYATLSGTSMAAPI 214
Query: 556 AAAIAALVKATHRDWSSAAIRSALMTT 582
A +AAL+ + + D + A +++AL++T
Sbjct: 215 VAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSS 572
DI APGVDIL+AW+ ++ T LSGTSM+ PH A +AA + + D S
Sbjct: 194 DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 573 AAIRSALMTTA 583
A +++ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+A+FSSRGPS +KPDI APGV+I +A P Y SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAV-PGG------------GYGSSSGTSMA 230
Query: 553 CPHAAAIAALVKA 565
PH A +AAL+ +
Sbjct: 231 APHVAGVAALLWS 243
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 61/243 (25%), Positives = 78/243 (32%), Gaps = 84/243 (34%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
G+ + V +LDTGI D P G + T +SF G
Sbjct: 7 GAGVRVAVLDTGI--------DLTHPAF---------AGRDITT----------KSFVGG 39
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
D GHGTH + TI G V G GVA A IA+
Sbjct: 40 --------EDVQDGH------GHGTHCAGTIFGRDVP---------GPRYGVARGAEIAL 76
Query: 257 YKVLFSNDNLAAAETDVLAGMDQAIADGVDI--MSLSLAFPETTFDENPIA--------- 305
+ D + +LAG+ A+A+G D+ MSL FP P
Sbjct: 77 IGKV-LGDG-GGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEA 134
Query: 306 --------------IGAFAALKRGIFVACSAGNSGPRPYSIRNGA-----PWITAVGAGT 346
+ A AAL RG + +AGN RP I P V A
Sbjct: 135 YRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA-- 192
Query: 347 VDR 349
V
Sbjct: 193 VGA 195
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAI-GVAPMARIAMYK 258
N +I DD S HG H + + G+ ++ G I GVAP A++ K
Sbjct: 71 NNDDILDEDDGSS------HGMHVAGIVAGNGDEE------DNGEGIKGVAPEAQLLAMK 118
Query: 259 VLFSNDNLAAA-ETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFA-ALKRGI 316
V FSN + + ++ A+ G D++++SL D + A A + G+
Sbjct: 119 V-FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGV 177
Query: 317 FVACSAGNSG 326
V +AGN G
Sbjct: 178 VVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 47/231 (20%), Positives = 71/231 (30%), Gaps = 72/231 (31%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
G+ + VG++D+G + SH F+
Sbjct: 2 GAGVKVGVIDSG-----------------------------IDLSH--------PEFAGR 24
Query: 197 I-RQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIA 255
+ + Y S D HGTH + I +R G GVAP A +
Sbjct: 25 VSEASYYVAVNDAGYASNGDGDSHGTHVAGVIAAARD---------GGGMHGVAPDATLY 75
Query: 256 MYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENP------------ 303
+ ++ ++ D+ A D A GV I++ S +
Sbjct: 76 SARA-SASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNT 134
Query: 304 -IAIGAFAALKRGIFVACSAGNSGPR-PYSIRNGAP---------WITAVG 343
+A A AA G+FV +AGN G P P WI V
Sbjct: 135 LLAALARAANAGGLFVF-AAGNDGQANPSLAAAALPYLEPELEGGWIAVVA 184
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I + T + A+FS+ G W+ D+ APG IL+ P+ D
Sbjct: 178 IAVAATDQDDKRASFSNYGK-----WV---DVSAPGGGILSTT-PDG------------D 216
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586
Y +SGTSM+ PH A +AAL+ + S++ +R AL TAD +
Sbjct: 217 YAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 31/129 (24%)
Query: 206 TTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAI-GVAPMARIAMYKVLFSND 264
D D GHGTH + T+GG +G AK + V KVL +
Sbjct: 52 DFVGGDPDSDCNGHGTHVAGTVGGKT------YGVAKKANLVAV---------KVL--DC 94
Query: 265 NLAAAETDVLAGMDQAIADGVD-----IMSLSLAFP-ETTFDENPIAIGAFAAL-KRGIF 317
N + + ++AG++ D + ++SL T D A AA G+
Sbjct: 95 NGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDA------AVAAAVNAGVV 148
Query: 318 VACSAGNSG 326
V +AGNS
Sbjct: 149 VVVAAGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSC 553
+A FS RGP+ +KPDI APGV+IL A P YT SGTS++
Sbjct: 359 IAIFSGRGPT--RDGRIKPDIAAPGVNILTA-SPGG------------GYTTRSGTSVAA 403
Query: 554 PHAAAIAAL------VKATHRDWSSAAIRSALMTTAD 584
A AL V+ I++ L+ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 54/190 (28%), Positives = 76/190 (40%), Gaps = 53/190 (27%)
Query: 184 NRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKG 243
N +++G F N N + TDD HGT ST+ G Y G
Sbjct: 26 NLRILGEYDFVD----NSNNTNYTDDD--------HGTAVLSTMAG----------YTPG 63
Query: 244 TAIGVAPMARIAMYKVLFSNDNLAA----AETDVLAGMDQAIADGVDIMSLSLAFPETTF 299
+G AP A L +++A+ E + +A + A + GVDI+S SL + TTF
Sbjct: 64 VMVGTAPNASY----YLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGY--TTF 117
Query: 300 DENP--------------IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAP----WITA 341
D I+ A A +G+ V SAGN G + GAP + +
Sbjct: 118 DNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGI-GAPADAENVLS 176
Query: 342 VGAGTVDREF 351
VGA VD
Sbjct: 177 VGA--VDANG 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 20/99 (20%)
Query: 512 PDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWS 571
DI APGVDI++A Y +SGTSM+ PH A +AAL W+
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAAL-------WA 252
Query: 572 SAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAG 610
A ++ A +L D G G
Sbjct: 253 EALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVL 274
D GHGT + I A G GVAP I Y+V +A + ++
Sbjct: 51 DKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVF--GSCGSAESSWII 96
Query: 275 AGMDQAIADGVDIMSLSLA-----FPETTFDENPIAIGAFA---ALKRGIFVACSAGNSG 326
+ A DGVD+++LSL E D+ A A +G V +AGN G
Sbjct: 97 KAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 461 DGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVD 520
+G K I +A + +++ A+FSS GP+ + LKPD++A G
Sbjct: 157 EGSTQWKGIGAPADA----ENVLSVGAVDANGNKASFSSIGPT--ADGRLKPDVMALGTG 210
Query: 521 ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALM 580
I N T +GTS SCP A + A + H +W++ I+ A++
Sbjct: 211 IYVINGDGN-------------ITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAIL 257
Query: 581 TTAD 584
+A
Sbjct: 258 KSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA-AWVPNNPWQPIRDDYLLT 541
I + T Q A++S+ GP++ D+ APG D + P
Sbjct: 192 IAVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGG 243
Query: 542 D-YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582
Y L GTSM+ PH A +AAL+K+ + + A I S L +T
Sbjct: 244 STYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 47/215 (21%), Positives = 72/215 (33%), Gaps = 56/215 (26%)
Query: 141 IVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQN 200
VG+LDTGI + +H + R R N
Sbjct: 1 TVGVLDTGI-----------------------------DVNHP---DLSGRYIGLAYR-N 27
Query: 201 GLNISTTD-DYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKV 259
G + D D D GHGTH + I +GVAP A++ KV
Sbjct: 28 GYDFVDNDPDPTPDDDNNGHGTHVAGIIAAGDNNGSG--------GVGVAPNAKLESVKV 79
Query: 260 LFSNDNLAAAETDVLAGMDQAI--ADGVDIMSLSLAFPETTFDENPIAIGAFA---ALKR 314
L ++++ ++ A + + ++++SL + AI A A +
Sbjct: 80 L---PGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNK 136
Query: 315 GIFVACSAGNSGPRPYSIRNGAP-----WITAVGA 344
G +AGN G + P IT VGA
Sbjct: 137 GSLFVVAAGNGGDYADNNPVSDPASANNIIT-VGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 469 IINVGNATVSIKFQITI--LGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526
+I VG A VS + L K +SSRGP+ L I APG I A V
Sbjct: 303 VIGVG-AYVSPEMMAAEYSLREKLPGNQYTWSSRGPTADGA--LGVSISAPGGAI--ASV 357
Query: 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAA-AIAALV---KATHRDWSSAAIRSALMTT 582
PN + L L++GTSMS P+A IA L+ KA ++ ++R AL T
Sbjct: 358 PN---------WTLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENT 408
Query: 583 A 583
A
Sbjct: 409 A 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
++FS GP W+ D+ APG +I++ P D L T SGTS +
Sbjct: 189 TPSSFSLPGP-----WV---DLAAPGENIVSL-SP-------GGDGLATT----SGTSFA 228
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584
P + AALV++ D ++A +R + TAD
Sbjct: 229 APFVSGTAALVRSRFPDLTAAQVRRRIEATAD 260
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 511 KPDILAP-GVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD 569
KPD+ AP GV+ + P GTS + PHAA +AALV + +
Sbjct: 190 KPDVTAPDGVNGTVDGDGDGPPN-------------FFGTSAAAPHAAGVAALVLSANPG 236
Query: 570 WSSAAIRSALMTTADVL-----DNAYG 591
+ A IR AL +TA + DNA G
Sbjct: 237 LTPADIRDALRSTALDMGEPGYDNASG 263
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 43/197 (21%), Positives = 69/197 (35%), Gaps = 47/197 (23%)
Query: 138 SDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGI 197
D++V ++DTG+ ++ D W E+
Sbjct: 2 GDVVVAVIDTGV---DYNHPDL----KDNMWVNPGEIP----------------GNGIDD 38
Query: 198 RQNGL--NISTTDDYDSPRDFF---GHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMA 252
NG +I + ++ D GHGTH + IG G A GVA
Sbjct: 39 DGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVG-------NNGIGIA-GVAWNV 90
Query: 253 RIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL---AFPETTFDENPIAIGAF 309
+I K L ++ + + D + +D A+ G I++ S + D AI
Sbjct: 91 KIMPLKFLGADGSGTTS--DAIKAIDYAVDMGAKIINNSWGGGGPSQALRD----AIA-- 142
Query: 310 AALKRGIFVACSAGNSG 326
A+ GI +AGN G
Sbjct: 143 RAIDAGILFVAAAGNDG 159
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 52/228 (22%), Positives = 74/228 (32%), Gaps = 74/228 (32%)
Query: 137 GSDIIVGILDTGI-------------------WPESKSYDDRGMPPVPERWRGACEVGVE 177
G ++VGI+DTGI W ++ PP G E
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP---PPGGY------YGGGE 53
Query: 178 FNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDH 237
+ N L N +I + D + GHGTH + G+
Sbjct: 54 YTEEIINAALAS---------DNPYDIVPSRDEN------GHGTHVAGIAAGN------- 91
Query: 238 FGYAKGTAIGVAPMARIAM--------YKVLFSNDNLAAAETDVLAGM----DQAIADGV 285
G GVAP A + + Y F D ETD++ + D+A+
Sbjct: 92 -GDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN- 149
Query: 286 DIMSLSLAFP-ETTFD----ENPI--AIGAFAALKRGIFVACSAGNSG 326
L + T F + + I A + L RGI V AGN G
Sbjct: 150 --KPLVINISLGTNFGSHDGTSLLERYIDAISRL-RGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I + T A++S+ G + D++APGV I
Sbjct: 155 IAVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGG---- 202
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582
Y SGTS + P AA +AAL+ + + + + A + L +T
Sbjct: 203 YGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 30/140 (21%)
Query: 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMAR-IAMYKVLFSNDN 265
+ P D GHGTHT T+ G+ G IGVAP AR IA +
Sbjct: 42 VGNTPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIAC--RALDRNG 90
Query: 266 LAAAETDVLAGMDQAIA----DGV--------DIMSLSLAFPETTFDENPIAIGAFAALK 313
A D L +A G D+++ S P +N A AA +
Sbjct: 91 GNDA--DYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS---GDNEWLQPAVAAWR 145
Query: 314 R-GIFVACSAGNSGPRPYSI 332
GIF +AGN GPR ++
Sbjct: 146 AAGIFPVFAAGNDGPRCSTL 165
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 56/224 (25%), Positives = 79/224 (35%), Gaps = 57/224 (25%)
Query: 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGA 190
W G GS + V ++DTG+ P +
Sbjct: 22 WDITG-GSGVTVAVVDTGVDP--------------------------------THPDLLK 48
Query: 191 RSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAP 250
F G D+ D GHGTH + I ++ G A GVAP
Sbjct: 49 VKFVLGY-------DFVDNDSDAMDDNGHGTHVAGIIA----AATNN---GTGVA-GVAP 93
Query: 251 MARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL--AFPETTFDENPIAIGA 308
A+I KVL + N + + D+ G+ A G +++LSL T E AI
Sbjct: 94 KAKIMPVKVL--DANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTALQE---AI-N 147
Query: 309 FAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
+A +G+ V +AGN G S P AV A D + A
Sbjct: 148 YAW-NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRA 190
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 31/124 (25%)
Query: 460 KDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519
GE +I VG ++ + VANFS+ G D+ APG
Sbjct: 198 NGGEPANNFI-TVGASSKKYE----------NNLVANFSNYGKK-------NVDVFAPGE 239
Query: 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSAL 579
I + P+N +Y SGTSM+ P + +AAL+ + + + ++ ++ +
Sbjct: 240 RIYST-TPDN------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQII 286
Query: 580 MTTA 583
+ +
Sbjct: 287 LESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVD-ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
A+FS+ G W+ DI APGV IL+ + +Y LSGTSM+
Sbjct: 198 KASFSNYGR-----WV---DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMA 242
Query: 553 CPHAAAIAALVK 564
PH + +AALV
Sbjct: 243 APHVSGVAALVL 254
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 49/199 (24%), Positives = 67/199 (33%), Gaps = 43/199 (21%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
G IVG+ DTG+ D + + N H RK++ S S
Sbjct: 6 GKGQIVGVADTGL--------DTNHCFFYDPNFN------KTNLFH--RKIVRYDSLSD- 48
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
T DD D GHGTH + I G Y GVAP A++
Sbjct: 49 ---------TKDDVD------GHGTHVAGIIAGKGNDSSSISLYK-----GVAPKAKLYF 88
Query: 257 YKVLFSNDNLAAAE--TDVLAGMDQAIADGVDIMSLSLAFPETT-FDENPIAIGAFAALK 313
+ ++ NL++ + + M A G I S S P + A FA
Sbjct: 89 QDIGDTSGNLSSPPDLNKLFSPMYDA---GARISSNSWGSPVNNGYTLLARAYDQFAYNN 145
Query: 314 RGIFVACSAGNSGPRPYSI 332
I SAGN G +
Sbjct: 146 PDILFVFSAGNDGNDGSNT 164
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSS 572
D APGVD+ A P Y +SGTS + P A AL+
Sbjct: 168 DFAAPGVDVWVA-------APGGG------YRYVSGTSFAAPFVTAALALLLQASPLAPD 214
Query: 573 AAIRSALMTTAD 584
A T D
Sbjct: 215 DARARLAATAKD 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 487 GTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDY--- 543
+S GP SP +KPD++A G ++ + D LLT
Sbjct: 191 SAVGPAPAGATTSSGP--GSPGPIKPDVVAFGGNLA---YDPSGNAADGDLSLLTTLSSP 245
Query: 544 -----TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALM 580
+ GTS + P AA +AA + A + S IR AL+
Sbjct: 246 SGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 514 ILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSA 573
+ APG +I + Y +SGTS + PH + AAL+ ++
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 574 AIRSALMTTAD 584
+R L+TTA
Sbjct: 257 QVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 469 IINVGNATVSIKFQITILGTKPAP--QVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526
I+VG AT + G P V ++SSRGPS+ KPD+ A G AW
Sbjct: 194 AISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRGPSIAG--DPKPDLAAIGA---FAWA 248
Query: 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAA------IRSALM 580
P + L GTSM+ P A AALV + ++ +R+ LM
Sbjct: 249 PGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILM 308
Query: 581 TTA 583
+TA
Sbjct: 309 STA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 1e-04
Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 15/161 (9%)
Query: 195 KGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARI 254
G G + D D GHGTH + TI GVAP A++
Sbjct: 161 AGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKL 213
Query: 255 AMYKVLFSNDNLAAAETDVLAGMDQAIADG--VDIMSLSLAFPETTFDENPI-AIGAFAA 311
+ KVL + + +DV G++ A G D+++LSL + + A AA
Sbjct: 214 LLVKVL-GSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAA 272
Query: 312 LKRGIFVACSAGNSGPRPYSIRNGAPWI----TAVGAGTVD 348
G+ + +AGN G P + G +D
Sbjct: 273 NAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD 313
|
Length = 508 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278
HGTH +S I G V+ G+AP+ R + F+ D ++ D+ ++
Sbjct: 52 HGTHVASLIFGQPCSSVE----------GIAPLCRGLNIPI-FAEDRRGCSQLDLARAIN 100
Query: 279 QAIADGVDIMSLSLAFPETTFDENPIAIGAFA-ALKRGIFVACSAGNSGPRPYSIRNGAP 337
A+ G I+++S T + +PI A A + + + +AGN G + P
Sbjct: 101 LALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALP 160
Query: 338 WITAVGA 344
+ AVGA
Sbjct: 161 SVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 211 DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAE 270
+ D GHGT + I SR Q +G AP A I +++V F+N+ ++
Sbjct: 39 KTLDDGLGHGTFVAGVIASSREQ-----------CLGFAPDAEIYIFRV-FTNNQVSYTS 86
Query: 271 TDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY 330
L + AI +D+++LS+ P+ F + P + I + + GN GP
Sbjct: 87 W-FLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYG 143
Query: 331 SIRNGAPWITAVGAGTVD 348
++ N A + +G G +D
Sbjct: 144 TLNNPADQMDVIGVGGID 161
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|218971 pfam06280, DUF1034, Fn3-like domain (DUF1034) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 641 NYPSFIIILNNTNTASFTFK----RVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAG 696
N +F + L+N + T+ VLT+V DT Y A G + P T++
Sbjct: 8 NTFTFTVTLHNLGNKAVTYTVSHLGVLTDVVDTTEGYLILASADPGAALTFSPPTVTVP- 66
Query: 697 KYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSP 742
+ ++TV + L S FL G++T+ +G + P
Sbjct: 67 --AGGSATVTVTLTLPSGFDANGYFL--EGFVTFKGSDGSPSLSVP 108
|
This family consists of several domains of unknown function which are present in several bacterial and plant peptidases. This domain is found in conjunction with pfam00082, pfam02225 and is often found with pfam00746. This domain has a structure similar to an Fn3 domain. Length = 110 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 380 PIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439
P+ + C P V GK + G + ++ E +++GAAG I
Sbjct: 9 PLVYVGNGDDAGGCCPEDLADSDVKGKIVLVR---RGGCSFVEKAENAQRAGAAGVIIYN 65
Query: 440 DSRQHLS-----PEVFNMPFVAVNLKDGE 463
+ L P +P V ++ +DGE
Sbjct: 66 NDTGGLGGTVGDPSDVTIPVVFISYEDGE 94
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.6 bits (99), Expect = 7e-04
Identities = 51/217 (23%), Positives = 74/217 (34%), Gaps = 28/217 (12%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I + + VA+FS+ G DI APGV+IL+ N DY
Sbjct: 307 IAVGALDLSDTVASFSNDGSPT------GVDIAAPGVNILSL-SAVNTLPGDGADY---- 355
Query: 543 YTLLSGTSMSCPHAAAIAALVKA-THRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVA 601
LSGTSM+ PH + +AALV + + + A +R+ ++TTA T ++
Sbjct: 356 -VTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG------------LTPLS 402
Query: 602 GTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFIIILNNTNTASFTFKR 661
G G G N + A V GT ++ + L
Sbjct: 403 GVDNLVGGGLANLDAAATD---VAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAA 459
Query: 662 VLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKY 698
V T TA A A + A
Sbjct: 460 VAVAGTVTVGLGTAGTIALAALGGASAALARREARGD 496
|
Length = 508 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 205 STTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVL---F 261
TDD D GHGT + I G + GVAP ARI + F
Sbjct: 45 DGTDDCD------GHGTLVAGIIAGRPGEGDGF--------SGVAPDARILPIRQTSAAF 90
Query: 262 SNDNLAAAETDVLA---GMDQAIADGVDIMSLSLAFPETT---FDENPIAIGAFAALKRG 315
D + D+ + +A G D++++SL D+ + AL +G
Sbjct: 91 EPDEGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKG 150
Query: 316 IFVACSAGNSG 326
+ V +AGN+G
Sbjct: 151 VVVVAAAGNTG 161
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 27/123 (21%)
Query: 244 TAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD---GVDIMSLSLAFPETTFD 300
A +AP A I +Y F+ + L A+ D ++S+S PE +
Sbjct: 82 YAGAIAPGANITLY---FAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP 135
Query: 301 ENPIA-----IGAFAALKRGIFVACSAGNSGPRPYSIRNGA-----------PWITAVGA 344
AA +GI V ++G+SG P++TAVG
Sbjct: 136 PAYAQRVCNLFAQAAA--QGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGG 193
Query: 345 GTV 347
T+
Sbjct: 194 TTL 196
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.88 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.24 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.11 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.89 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.8 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.72 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.7 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.69 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.67 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.67 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.64 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.55 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.51 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.5 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.49 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.45 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.44 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.42 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.39 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.37 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.3 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.21 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.17 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.31 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 97.06 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.03 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.9 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.89 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.59 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.53 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.28 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 94.99 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.47 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 94.47 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 93.95 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 93.68 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.84 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 91.68 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 88.37 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 84.63 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 84.23 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 81.46 | |
| PF00635 | 109 | Motile_Sperm: MSP (Major sperm protein) domain; In | 81.25 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=451.01 Aligned_cols=305 Identities=53% Similarity=0.843 Sum_probs=258.8
Q ss_pred eccccccCCccccccccCC--CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceee
Q 037455 111 GHLHTTRTPQFLGLKKHAG--VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLI 188 (755)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~ 188 (755)
++++++++++++++..+.. +|.++++|+||+|||||||||++||+|.+++..+.+..|.+.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678889999999977555 47789999999999999999999999999999999999999999998887778999999
Q ss_pred eeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCC
Q 037455 189 GARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAA 268 (755)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~ 268 (755)
+.++|..++..... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+. +
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~--~ 157 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG--C 157 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC--c
Confidence 99999887644322 12334456688999999999999999977665555666667899999999999999988444 7
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEecccccc
Q 037455 269 AETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVD 348 (755)
Q Consensus 269 ~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~ 348 (755)
..+++++||++|++++++|||||||........+.+..++..+.++|+++|+||||+|+...+.++..||+++||+.+
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 899999999999999999999999997644566788888889999999999999999988778888899999999710
Q ss_pred ceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHH
Q 037455 349 REFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVR 428 (755)
Q Consensus 349 ~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~ 428 (755)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCC
Q 037455 429 KSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPW 508 (755)
Q Consensus 429 ~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g 508 (755)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 509 ILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 509 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 477999999999999875311 111222358999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=445.38 Aligned_cols=297 Identities=21% Similarity=0.202 Sum_probs=211.9
Q ss_pred ccccccc--cCCCCc--CCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCcee---eeeee
Q 037455 120 QFLGLKK--HAGVWP--AAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKL---IGARS 192 (755)
Q Consensus 120 ~~~g~~~--~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki---~g~~~ 192 (755)
..|+++. +..+|+ .+.+|+||+|||||||||++||||.++-.... ....|+- .++. +++.. +.+++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Grd----giDd--D~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRK----GIDD--DNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCcc----cccc--ccCCccccccccc
Confidence 3466654 344665 45689999999999999999999986411000 0000100 0000 01111 11223
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhH
Q 037455 193 FSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETD 272 (755)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~ 272 (755)
|.++ ..+|.|++||||||||||||...++ ..+.||||+|+|+++|+++..+. +..++
T Consensus 367 fVd~-------------~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~--G~~sd 423 (639)
T PTZ00262 367 FVNN-------------DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKL--GRLGD 423 (639)
T ss_pred ccCC-------------CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCC--ccHHH
Confidence 3221 2347889999999999999975432 12489999999999999988775 78899
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------------ccc----
Q 037455 273 VLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS--------------IRN---- 334 (755)
Q Consensus 273 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~---- 334 (755)
+++||+||++.|++|||||||... ....+..++.+|.++|+++|+||||+|..... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 999999999999999999999752 34567888889999999999999999864321 111
Q ss_pred CCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecC
Q 037455 335 GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDY 414 (755)
Q Consensus 335 ~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 414 (755)
..+++|+|||...+.
T Consensus 501 ~~~nVIaVGAv~~d~----------------------------------------------------------------- 515 (639)
T PTZ00262 501 KLRNVITVSNLIKDK----------------------------------------------------------------- 515 (639)
T ss_pred cCCCEEEEeeccCCC-----------------------------------------------------------------
Confidence 235566666532100
Q ss_pred CCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCcc
Q 037455 415 NGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQV 494 (755)
Q Consensus 415 ~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 494 (755)
......
T Consensus 516 --------------------------------------------------------------------------~~~~s~ 521 (639)
T PTZ00262 516 --------------------------------------------------------------------------NNQYSL 521 (639)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 000123
Q ss_pred ccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHH
Q 037455 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAA 574 (755)
Q Consensus 495 a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 574 (755)
+.||++|.. ++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+|++.|
T Consensus 522 s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~q 581 (639)
T PTZ00262 522 SPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEE 581 (639)
T ss_pred cccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHH
Confidence 456676632 349999999999998864 899999999999999999999999999999999
Q ss_pred HHHHHHccccccccCCcccccCCCCCCCCCCccc-ccccCcCccCCCCe
Q 037455 575 IRSALMTTADVLDNAYGMITDKSTGVAGTPLDFG-AGHINPNKAMDPGL 622 (755)
Q Consensus 575 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~in~~~Av~~~l 622 (755)
|+++|++||.++... +..+| .|+||+.+||+.++
T Consensus 582 V~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai 616 (639)
T PTZ00262 582 VIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAI 616 (639)
T ss_pred HHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHH
Confidence 999999999876321 11233 38999999997544
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=409.30 Aligned_cols=244 Identities=26% Similarity=0.385 Sum_probs=198.5
Q ss_pred CcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCC
Q 037455 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDY 210 (755)
Q Consensus 131 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 210 (755)
|+++++|+||+|||||||||.+||+|.+. ....+|...
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~~-------------- 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTNE-------------- 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCCC--------------
Confidence 89999999999999999999999999631 000111111
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEE
Q 037455 211 DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSL 290 (755)
Q Consensus 211 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~ 290 (755)
....|+.||||||||||+|+.. .+.||||+|+|+.+|++.+.+. ...++++++|+||+++++|||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~a~~~a~~~~~~Vin~ 105 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQV--SYTSWFLDAFNYAILTKIDVLNL 105 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCC--chHHHHHHHHHhhhhcCCCEEEe
Confidence 1245778999999999998742 1389999999999999988764 56778899999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEeccccccceeeEEEEeCCceEEEeeee
Q 037455 291 SLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS--IRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKS 368 (755)
Q Consensus 291 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~ 368 (755)
|||... +...++..++.++.++|++||+||||+|+...+ .+...+++|+||+..
T Consensus 106 S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------- 161 (255)
T cd07479 106 SIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------- 161 (255)
T ss_pred eccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------
Confidence 999853 334567777778889999999999999975433 456678899998732
Q ss_pred ccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCC
Q 037455 369 VYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPE 448 (755)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~ 448 (755)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCC----CCCCcccCeeEeCCCcEEee
Q 037455 449 VFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSL----RSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 449 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~g~lKPDI~APG~~I~sa 524 (755)
..+.++.|||+|++. ...+++||||+|||.+|+++
T Consensus 162 -----------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 162 -----------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred -----------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 123678899999652 12378899999999999987
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHccccccc
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR----DWSSAAIRSALMTTADVLD 587 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~ik~~L~~TA~~~~ 587 (755)
.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 201 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 6543 788999999999999999999999998 7899999999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=417.10 Aligned_cols=287 Identities=27% Similarity=0.283 Sum_probs=190.5
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|+||+|||||||||++||||.++... .|+. .|+ +..++....++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 79999999999999999999753110 0000 000 00011111111111 11236789
Q ss_pred CCCchhhhhhhccCCCCCCccccc-CCceeeeecCCCeEEEEEEeecCCCCCCChhHHHH-------HHHHH--HhCCCc
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGY-AKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLA-------GMDQA--IADGVD 286 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~-------ai~~a--~~~g~d 286 (755)
+||||||||||||......+.+++ ....+.||||+|+|+.+|+|...+. .....+.+ +++|. .+++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDV--IYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCc--chhhhhhhccchhhhhhhhhhccCCCce
Confidence 999999999999986433222221 1234689999999999999975542 22222332 34443 367999
Q ss_pred EEEEccCCCCCCC-----CCCHHHHHHHHH-HhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeEEEEeC
Q 037455 287 IMSLSLAFPETTF-----DENPIAIGAFAA-LKRGIFVACSAGNSGPRPY--SIRNGAPWITAVGAGTVDREFAAHVTLG 358 (755)
Q Consensus 287 VIn~SlG~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~ 358 (755)
|||||||...... ..+..+...+.+ .++|+++|+||||+|+... ..+..++++|+|||++.....+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---- 209 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---- 209 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----
Confidence 9999999854211 122333333332 4789999999999997643 456678999999996422110000
Q ss_pred CceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEe
Q 037455 359 NEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438 (755)
Q Consensus 359 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~ 438 (755)
.+.
T Consensus 210 ---------------------~~~-------------------------------------------------------- 212 (311)
T cd07497 210 ---------------------LFG-------------------------------------------------------- 212 (311)
T ss_pred ---------------------hhc--------------------------------------------------------
Confidence 000
Q ss_pred cCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCC
Q 037455 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPG 518 (755)
Q Consensus 439 n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG 518 (755)
......+.++.||||||+.+ +++||||+|||
T Consensus 213 -----------------------------------------------~~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG 243 (311)
T cd07497 213 -----------------------------------------------YLPGGSGDVVSWSSRGPSIA--GDPKPDLAAIG 243 (311)
T ss_pred -----------------------------------------------cccCCCCCccccccCCCCcc--cCCCCceeccC
Confidence 00112357899999999986 89999999999
Q ss_pred CcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHccc
Q 037455 519 VDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR------DWSSAAIRSALMTTA 583 (755)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~ls~~~ik~~L~~TA 583 (755)
++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999876542100 011123799999999999999999999999976 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=412.41 Aligned_cols=270 Identities=25% Similarity=0.258 Sum_probs=202.5
Q ss_pred CCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCC
Q 037455 134 AGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSP 213 (755)
Q Consensus 134 ~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (755)
+++|+||+|||||||||.+||++.+...+..+ +...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~-----------------------~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLP-----------------------GNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCC-----------------------cceeeccc-------------cCCC
Confidence 57899999999999999999865432111111 10011110 1124
Q ss_pred CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccC
Q 037455 214 RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLA 293 (755)
Q Consensus 214 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 293 (755)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~-------~~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG-------GGELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC-------CCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 57889999999999 499999999998863 35789999999999999999999999
Q ss_pred CCCCCC-CCCHHHHHHHHHHhC-CcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeecc
Q 037455 294 FPETTF-DENPIAIGAFAALKR-GIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVY 370 (755)
Q Consensus 294 ~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~ 370 (755)
....+. ....+..++.++.++ |+++|+||||+|.... ..+...|++|+|||.+.........
T Consensus 100 ~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------- 164 (275)
T cd05562 100 YLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------- 164 (275)
T ss_pred ccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------
Confidence 865433 345678888888887 9999999999998543 4567899999999965322110000
Q ss_pred CCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCc
Q 037455 371 PENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVF 450 (755)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~ 450 (755)
|. +.
T Consensus 165 ----------------------~~------------------~~------------------------------------ 168 (275)
T cd05562 165 ----------------------DP------------------AP------------------------------------ 168 (275)
T ss_pred ----------------------cc------------------cc------------------------------------
Confidence 00 00
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCc-EEeeecCCC
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVD-ILAAWVPNN 529 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~-I~sa~~~~~ 529 (755)
.......+.||++||+.+ +++||||+|||+. +.+++..
T Consensus 169 -------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~-- 207 (275)
T cd05562 169 -------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDG-- 207 (275)
T ss_pred -------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcC--
Confidence 000113456888999876 7899999999753 4444433
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGA 609 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~ 609 (755)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. .+..+..|||
T Consensus 208 -----------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~ 264 (275)
T cd05562 208 -----------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGS 264 (275)
T ss_pred -----------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCc
Confidence 27999999999999999999999999999999999999999999874 2345569999
Q ss_pred cccCcCccCC
Q 037455 610 GHINPNKAMD 619 (755)
Q Consensus 610 G~in~~~Av~ 619 (755)
|+||+.+||+
T Consensus 265 G~vda~~Av~ 274 (275)
T cd05562 265 GLVDADRAVA 274 (275)
T ss_pred CcccHHHHhh
Confidence 9999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=422.23 Aligned_cols=312 Identities=26% Similarity=0.346 Sum_probs=233.3
Q ss_pred CCcCCC-CCCccEEEEEcccccCCCCCCcCCCCCCCCc-----ccccceeccccccccccCceeeeeeeccccccccCCC
Q 037455 130 VWPAAG-FGSDIIVGILDTGIWPESKSYDDRGMPPVPE-----RWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLN 203 (755)
Q Consensus 130 ~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 203 (755)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDDI--- 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCcc---
Confidence 688887 9999999999999999999998764332111 111111111 1124667888888887663211
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeec--CCCCCCChhHHHHHHHHHH
Q 037455 204 ISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFS--NDNLAAAETDVLAGMDQAI 281 (755)
Q Consensus 204 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g~~~~~~~~i~~ai~~a~ 281 (755)
....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+. .....+++++++++
T Consensus 76 -------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~--~~~~~~~~ai~~a~ 141 (346)
T cd07475 76 -------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGS--TYDDAYAKAIEDAV 141 (346)
T ss_pred -------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCC--CCHHHHHHHHHHHH
Confidence 11446889999999999998654221 223599999999999999974 333 67888999999999
Q ss_pred hCCCcEEEEccCCCCCC-CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc----------------ccCCCceEEecc
Q 037455 282 ADGVDIMSLSLAFPETT-FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSI----------------RNGAPWITAVGA 344 (755)
Q Consensus 282 ~~g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga 344 (755)
+.|++|||||||..... .....+..++.++.++|+++|+||||+|...... +...+++|+||+
T Consensus 142 ~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga 221 (346)
T cd07475 142 KLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVAS 221 (346)
T ss_pred HcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEee
Confidence 99999999999987632 4456778888899999999999999998654321 122344555554
Q ss_pred ccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHH
Q 037455 345 GTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQL 424 (755)
Q Consensus 345 ~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 424 (755)
...
T Consensus 222 ~~~----------------------------------------------------------------------------- 224 (346)
T cd07475 222 ANK----------------------------------------------------------------------------- 224 (346)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCC
Q 037455 425 EEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSL 504 (755)
Q Consensus 425 ~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 504 (755)
.......+.++.||+|||+.
T Consensus 225 ------------------------------------------------------------~~~~~~~~~~~~~S~~G~~~ 244 (346)
T cd07475 225 ------------------------------------------------------------KVPNPNGGQMSGFSSWGPTP 244 (346)
T ss_pred ------------------------------------------------------------ccCCCCCCccCCCcCCCCCc
Confidence 00012335678999999998
Q ss_pred CCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhh----CCCCCHHH----HH
Q 037455 505 RSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT----HRDWSSAA----IR 576 (755)
Q Consensus 505 ~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~----ik 576 (755)
. +++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||
T Consensus 245 ~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik 309 (346)
T cd07475 245 D--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVK 309 (346)
T ss_pred c--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 6 799999999999999987764 7899999999999999999999998 78899876 78
Q ss_pred HHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCC
Q 037455 577 SALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 577 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
++|++||.+.... .....++.+.++|+|+||+.+||+
T Consensus 310 ~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 310 NLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 8999999853211 122566778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=425.87 Aligned_cols=406 Identities=22% Similarity=0.212 Sum_probs=239.1
Q ss_pred CCCCccEEEEEcccccCCCCCCcC-CCCCCCCcccccceeccccccccccCceeeeeeecccc-ccccCCCCCCCCCCCC
Q 037455 135 GFGSDIIVGILDTGIWPESKSYDD-RGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG-IRQNGLNISTTDDYDS 212 (755)
Q Consensus 135 ~~G~Gv~VgVIDtGid~~Hp~f~~-~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~~~~~~ 212 (755)
++|+||+|||||||||+.||+|++ +|.+++...|++....+..- ....+...+... .+.. .....+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~-~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAA-LASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHH-HhcCCccccCc
Confidence 479999999999999999999984 56778888898776543211 111111111110 0000 00011222233
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCC--------CCChhHHHHHHHHHHhC-
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNL--------AAAETDVLAGMDQAIAD- 283 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~--------~~~~~~i~~ai~~a~~~- 283 (755)
..|+.||||||||||||+..++ ..+.||||+|+|+++|++...+.. .+..++++.||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 5689999999999999986442 234899999999999999876521 15688999999999974
Q ss_pred ----CCcEEEEccCCCCC-CCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCccccC-----CCc--eEEeccccccce
Q 037455 284 ----GVDIMSLSLAFPET-TFDENPIAIGAFAALKR-GIFVACSAGNSGPRPYSIRNG-----APW--ITAVGAGTVDRE 350 (755)
Q Consensus 284 ----g~dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~p~--vitVga~~~~~~ 350 (755)
.+.|||||||.+.+ ....++++.++..+..+ |++||+||||+|....+.... ... -+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 46799999998763 44567888888887766 999999999999754433321 001 13344321 11
Q ss_pred eeEEEEeCCceE-EEe-----eeeccC-CC-CC-CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHH
Q 037455 351 FAAHVTLGNEEL-TVI-----GKSVYP-EN-LF-VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421 (755)
Q Consensus 351 ~~~~~~~~~g~~-~~~-----g~~~~~-~~-~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 421 (755)
+.-.++...... .+. |..... .. .. ...+.+.+... ..|... ..+....|.-.+..+-.+
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t----~i~v~y-~~~~~~~g~~~i~i~~~~------ 292 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT----TVYVYY-YLPEPYTGDQLIFIRFKN------ 292 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe----EEEEEE-cCCCCCCCCeEEEEEccC------
Confidence 111122111111 000 000000 00 00 00011111100 000000 011112222122111110
Q ss_pred HHHHHHHHcCceEEEEecC---CCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeee------eC-CcCC
Q 037455 422 QQLEEVRKSGAAGAIFSAD---SRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITI------LG-TKPA 491 (755)
Q Consensus 422 ~~~~~~~~~ga~g~i~~n~---~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~------~~-~~~~ 491 (755)
...|-.-+-++.. +|. ...|+|.-.+...+..++ ... +..+++.+... .. +...
T Consensus 293 ------~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~~--~~~tit~Pa~~~~vitVga~~~~~ 356 (455)
T cd07478 293 ------IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EPD--PYTTLTIPGTARSVITVGAYNQNN 356 (455)
T ss_pred ------CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cCC--CCceEecCCCCCCcEEEEEEeCCC
Confidence 0112222222222 111 123444333222221111 111 22334333221 11 1234
Q ss_pred CccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC----
Q 037455 492 PQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH---- 567 (755)
Q Consensus 492 ~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~---- 567 (755)
+.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 357 ~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~ 421 (455)
T cd07478 357 NSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRG 421 (455)
T ss_pred CcccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhcc
Confidence 56999999999987 899999999999999999864 89999999999999999999999975
Q ss_pred --CCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccccc
Q 037455 568 --RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAG 610 (755)
Q Consensus 568 --p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (755)
|.|++++||++|++||+++. +..+++++||||
T Consensus 422 ~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 422 NDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 245677899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=410.57 Aligned_cols=294 Identities=30% Similarity=0.390 Sum_probs=231.4
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.++|..+... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCcccc---cccCC
Confidence 5689999999999999999999999999985411 11133344444322110 01122
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcE
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDI 287 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dV 287 (755)
.+..++.|..+|||||||||+|...+ .| +.||||+|+|+.+|++.+.+. ...+.++++|+++++++++|
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGS--TTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCC--CCHHHHHHHHHHHHhcCCCE
Confidence 33345677899999999999998643 12 489999999999999987664 67778899999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 288 MSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 288 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
||||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 128 In~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------ 188 (312)
T cd07489 128 ITASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------ 188 (312)
T ss_pred EEeCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------
Confidence 9999998643 33477788888899999999999999987542 3355677888888611
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
+.||+|||+.+ ...||||+|||++++++
T Consensus 189 --------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~ 216 (312)
T cd07489 189 --------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILST 216 (312)
T ss_pred --------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEe
Confidence 46899999987 68999999999999999
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHccccccccCCcccccCCCCCCCC
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH-RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGT 603 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 603 (755)
++...+ .|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..-.. ..+++
T Consensus 217 ~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~~ 282 (312)
T cd07489 217 YPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLAP 282 (312)
T ss_pred eeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCCC
Confidence 887532 69999999999999999999999999 9999999999999999987644221111 11466
Q ss_pred CCcccccccCcCccCCCC
Q 037455 604 PLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 604 ~~~~G~G~in~~~Av~~~ 621 (755)
..++|+|+||+.+|++..
T Consensus 283 ~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 283 VAQQGAGLVNAYKALYAT 300 (312)
T ss_pred HhhcCcceeeHHHHhcCC
Confidence 779999999999999854
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=391.62 Aligned_cols=248 Identities=24% Similarity=0.297 Sum_probs=202.4
Q ss_pred CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCC
Q 037455 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDD 209 (755)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (755)
+|+.+++|+||+|||||+|||++||+|.+..+.+ ...+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~--------------------------~~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP--------------------------LFTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc--------------------------ccCccc-------------c
Confidence 7999999999999999999999999998542110 000000 0
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEE
Q 037455 210 YDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMS 289 (755)
Q Consensus 210 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn 289 (755)
..+..|..+|||||||||+|+..+ .+.||||+|+|+.+|++...+.. .+..++++||+||+++|++|||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~-~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRG-CSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEE
Confidence 112456789999999999987422 24899999999999999876531 3467899999999999999999
Q ss_pred EccCCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeee
Q 037455 290 LSLAFPET-TFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKS 368 (755)
Q Consensus 290 ~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~ 368 (755)
||||.... ......+..++..+.++|+++|+||||+|.....++...+++|+||+...
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 99997542 23345678888889999999999999999887778888999999997321
Q ss_pred ccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCC
Q 037455 369 VYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPE 448 (755)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~ 448 (755)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCC
Q 037455 449 VFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPN 528 (755)
Q Consensus 449 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~ 528 (755)
.+.++.||+||+.. .||||+|||.+|+++.+.+
T Consensus 171 ------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~ 203 (267)
T cd07476 171 ------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG 203 (267)
T ss_pred ------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC
Confidence 12456799999864 3889999999999998764
Q ss_pred CCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHcccccccc
Q 037455 529 NPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD----WSSAAIRSALMTTADVLDN 588 (755)
Q Consensus 529 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----ls~~~ik~~L~~TA~~~~~ 588 (755)
.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 204 -------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 -------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred -------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 8999999999999999854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=391.49 Aligned_cols=290 Identities=39% Similarity=0.533 Sum_probs=218.2
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCC-CCC-CCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGL-NIS-TTDDYDSPR 214 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~-~~~-~~~~~~~~~ 214 (755)
|+||+|||||+|||++||+|.+.. ..+.++...++|......... ... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 123355555555443211000 000 000111245
Q ss_pred CCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCC
Q 037455 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294 (755)
Q Consensus 215 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 294 (755)
|..+|||||||+|+|...+. ..+.||||+|+|+.+|+++..+. +...+++++|+|+++++++|||||||.
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGS--GTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 68899999999999985442 23489999999999999985554 788899999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCC
Q 037455 295 PETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSI--RNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPE 372 (755)
Q Consensus 295 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 372 (755)
.... ..+.+..+++++.++|+++|+||||+|...... +...+++|+||+.....
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 130 SVNG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred CCCC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 6432 356788888899999999999999998765443 56788999999843100
Q ss_pred CCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccc
Q 037455 373 NLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNM 452 (755)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~ 452 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCC-CCCCCCCCcccCeeEeCCCcEEeeecCCCCC
Q 037455 453 PFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSR-GPSLRSPWILKPDILAPGVDILAAWVPNNPW 531 (755)
Q Consensus 453 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~ 531 (755)
.........|+++ |+... +.+||||+|||++|++++....
T Consensus 186 -----------------------------------~~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 186 -----------------------------------VAEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred -----------------------------------cCCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCC--
Confidence 0011123344454 45543 7899999999999999987742
Q ss_pred CCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccc
Q 037455 532 QPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGH 611 (755)
Q Consensus 532 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 611 (755)
..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ..+++..+|+|+
T Consensus 227 ---------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~ 289 (295)
T cd07474 227 ---------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGR 289 (295)
T ss_pred ---------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcce
Confidence 279999999999999999999999999999999999999999998764421 223456999999
Q ss_pred cCcCcc
Q 037455 612 INPNKA 617 (755)
Q Consensus 612 in~~~A 617 (755)
||+.+|
T Consensus 290 l~~~~A 295 (295)
T cd07474 290 VDALRA 295 (295)
T ss_pred eccccC
Confidence 999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=389.74 Aligned_cols=269 Identities=22% Similarity=0.312 Sum_probs=189.0
Q ss_pred CccEEEEEcccccCCCCCCcCCCCCCCCc-ccccceeccccccccccCceeeeeeecccccccc----CCCCC------C
Q 037455 138 SDIIVGILDTGIWPESKSYDDRGMPPVPE-RWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQN----GLNIS------T 206 (755)
Q Consensus 138 ~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~-~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~----~~~~~------~ 206 (755)
++|+|||||||||++||+|++.-+....+ ..+|....+.+|..+ +++++|...+... +.+.+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998652111000 011111122222111 2344443311100 00000 0
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
..+...+.+..+|||||||||+|...+.. | +.||||+|+|+.+|++.... ....++++||+||++.|++
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~---~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGD---ERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCC---cCHHHHHHHHHHHHHCCCc
Confidence 11223355789999999999999864421 2 48999999999999986544 5778999999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------cCCCceEEeccccccceeeEEE
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS---IR--------NGAPWITAVGAGTVDREFAAHV 355 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~ 355 (755)
|||||||..... ....+..++..+.++|+++|+||||+|..... ++ ...+++|+||+....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975322 23456777888899999999999999864321 11 123455666652210
Q ss_pred EeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 037455 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435 (755)
Q Consensus 356 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~ 435 (755)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeE
Q 037455 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515 (755)
Q Consensus 436 i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~ 515 (755)
.....++.||++|+. +|||+
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011246889999974 45999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 516 APGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 516 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 236 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999997764 8999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=378.68 Aligned_cols=237 Identities=28% Similarity=0.354 Sum_probs=191.9
Q ss_pred cEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
|+|||||||||.+||+|.++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999997531 11111110 124567899
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCC-CCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDN-LAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
||||||||+|+..+. .||||+|+|+.+|++...+. ..++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999975321 69999999999999986431 1157788999999999999999999999742
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCc
Q 037455 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 377 (755)
...+..++.++.++|+++|+||||+|... ..+++..+++|+|++.+
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 35677888899999999999999999753 35677788999998732
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEE
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAV 457 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i 457 (755)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCC
Q 037455 458 NLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537 (755)
Q Consensus 458 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (755)
..+.++.||++|+.. ||+|||.+|+++.+.+
T Consensus 153 --------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~--------- 183 (239)
T cd05561 153 --------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG--------- 183 (239)
T ss_pred --------------------------------CCCCccccCCCCCcc--------eEEccccceecccCCC---------
Confidence 113567899999876 9999999999976653
Q ss_pred CcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccccc
Q 037455 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAG 610 (755)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (755)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 ----~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 ----GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred ----CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 899999999999999999999999999 999999999999999773 34455689998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=391.79 Aligned_cols=223 Identities=27% Similarity=0.265 Sum_probs=166.3
Q ss_pred CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccC
Q 037455 214 RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLA 293 (755)
Q Consensus 214 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 293 (755)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++......+...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999985332 235899999999999998654321123457899999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHH-HHhCCcEEEEecCCCCCCCCcc--cc-CCCceEEeccccccceeeEEEEeCCceEEEeeeec
Q 037455 294 FPETTFDENPIAIGAFA-ALKRGIFVACSAGNSGPRPYSI--RN-GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369 (755)
Q Consensus 294 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~ 369 (755)
..........+..++.+ +.++|+++|+||||+|+...+. ++ ..+++|+|||..........+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y-------------- 319 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY-------------- 319 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc--------------
Confidence 86532222234444444 4568999999999999876654 32 468999999843211100000
Q ss_pred cCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCC
Q 037455 370 YPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEV 449 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~ 449 (755)
.+
T Consensus 320 ----------~~-------------------------------------------------------------------- 321 (412)
T cd04857 320 ----------SL-------------------------------------------------------------------- 321 (412)
T ss_pred ----------cc--------------------------------------------------------------------
Confidence 00
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCC
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~ 529 (755)
.....+.++.||||||+.+ |++||||+|||+.|.+.-....
T Consensus 322 -------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~~ 362 (412)
T cd04857 322 -------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWTL 362 (412)
T ss_pred -------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccCCC
Confidence 0011346789999999997 8999999999999987522111
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----THRDWSSAAIRSALMTTADVL 586 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ik~~L~~TA~~~ 586 (755)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 -----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 -----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 2789999999999999999999975 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=380.99 Aligned_cols=246 Identities=28% Similarity=0.376 Sum_probs=196.6
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||||||++||+|..... ..+.++.+.++|.+... ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC------------CCCCCCCC
Confidence 79999999999999999952100 13446777777765421 01257889
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||+|+.. +.+.||||+|+|+.+|+............+++.|++|+.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999742 22589999999999999765432113456788999999999999999999986532
Q ss_pred CC------------CCHHHHHHHHHHhCCcEEEEecCCCCCC---CCccccCCCceEEeccccccceeeEEEEeCCceEE
Q 037455 299 FD------------ENPIAIGAFAALKRGIFVACSAGNSGPR---PYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELT 363 (755)
Q Consensus 299 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 363 (755)
.. ...+..+++.+.++|+++|+||||+|.. ....+...+++|+||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 21 1356778888999999999999999977 345677789999999732
Q ss_pred EeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC
Q 037455 364 VIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ 443 (755)
Q Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~ 443 (755)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEe
Q 037455 444 HLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523 (755)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~s 523 (755)
..+.++.||++||+.+ +++||||+|||.+|++
T Consensus 182 ----------------------------------------------~~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~ 213 (261)
T cd07493 182 ----------------------------------------------ANGNKASFSSIGPTAD--GRLKPDVMALGTGIYV 213 (261)
T ss_pred ----------------------------------------------cCCCCCccCCcCCCCC--CCcCCceEecCCCeEE
Confidence 1135678999999986 7999999999999998
Q ss_pred eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 214 ~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 214 INGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 54432 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=379.18 Aligned_cols=247 Identities=34% Similarity=0.388 Sum_probs=195.0
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|+||+|||||+|||++||+|.+. |++.... .+ ...++..+ .......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~------~~~~~~~d----~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SA------DHDYNWFD----PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------Cc------cccccccc----CCCCCCCCCCC
Confidence 89999999999999999999863 1110000 00 00111000 01112346678
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh------------CC
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA------------DG 284 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~------------~g 284 (755)
.+|||||||||+|..... ...||||+|+|+.+|+++..+ +...+++++++++++ .+
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG---GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC---CcHHHHHHHHHHHHhcccccccccccccC
Confidence 899999999999874321 137999999999999998776 788899999999975 78
Q ss_pred CcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCce
Q 037455 285 VDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 285 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
++|||||||.... ....+..++..+.++|++||+||||++.... ..+...+++|+||+.+
T Consensus 120 ~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~--------------- 182 (264)
T cd07481 120 PDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD--------------- 182 (264)
T ss_pred CeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC---------------
Confidence 9999999998643 2455666777888899999999999986543 2566788999999732
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcE
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDI 521 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I 521 (755)
..+.++.||++||... +++||||+|||.+|
T Consensus 183 ------------------------------------------------~~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i 212 (264)
T cd07481 183 ------------------------------------------------RNDVLADFSSRGPSTY--GRIKPDISAPGVNI 212 (264)
T ss_pred ------------------------------------------------CCCCCccccCCCCCCC--CCcCceEEECCCCe
Confidence 1235688999999986 79999999999999
Q ss_pred EeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 037455 522 LAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD--WSSAAIRSALMTTAD 584 (755)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--ls~~~ik~~L~~TA~ 584 (755)
.++.+.+ .|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 213 ~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9998774 7999999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=375.70 Aligned_cols=334 Identities=26% Similarity=0.391 Sum_probs=255.9
Q ss_pred CCCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCC--------CCCC---CC-ceEEEec--c-ceeEEEEEeCHHH
Q 037455 28 GDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDD--------GDGD---AP-THLYTYN--H-VMDGFSAVLSKNQ 92 (755)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~---~~-~v~~~y~--~-~~ng~s~~l~~~~ 92 (755)
..+.+|||.|++.......+.+.+|++.........-. +..+ .. .+.+.|. . +|+|+.-..+.+-
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 35689999999766655566666766654332221100 0000 00 1333333 2 7888888999999
Q ss_pred HHHhhcCCCeEEEEeceeecccc-----ccCCccccccccCC-------CC----cCCCCCCccEEEEEcccccCCCCCC
Q 037455 93 LEQLQKMPGHHATYLESFGHLHT-----TRTPQFLGLKKHAG-------VW----PAAGFGSDIIVGILDTGIWPESKSY 156 (755)
Q Consensus 93 ~~~L~~~~~V~~v~~~~~~~~~~-----~~~~~~~g~~~~~~-------~~----~~~~~G~Gv~VgVIDtGid~~Hp~f 156 (755)
+..+++.|-++.++++..+.... .+....|++.++.. .| ..-..|+||...|+||||+..||||
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999988776643 23334466654321 11 1223699999999999999999999
Q ss_pred cCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCc
Q 037455 157 DDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVD 236 (755)
Q Consensus 157 ~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~ 236 (755)
.++ +.| |..+++ .....|++||||||||+|++..
T Consensus 238 egR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt----- 271 (501)
T KOG1153|consen 238 EGR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT----- 271 (501)
T ss_pred ccc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc-----
Confidence 875 223 222111 0124589999999999999884
Q ss_pred ccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC---------CCcEEEEccCCCCCCCCCCHHHHH
Q 037455 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD---------GVDIMSLSLAFPETTFDENPIAIG 307 (755)
Q Consensus 237 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a 307 (755)
.|||.+++|+++||++++|+ ++.+++++++|++++. +..|.|||+|+.. .-.+..|
T Consensus 272 ---------~GvAK~s~lvaVKVl~~dGs--Gt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~A 336 (501)
T KOG1153|consen 272 ---------FGVAKNSNLVAVKVLRSDGS--GTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMA 336 (501)
T ss_pred ---------cccccccceEEEEEeccCCc--EeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHH
Confidence 79999999999999999998 9999999999999986 4679999999953 4568888
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccC
Q 037455 308 AFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYG 386 (755)
Q Consensus 308 ~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (755)
+++|.+.|+++++||||+..+.+ +.|+.+..+|||||++.
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------- 377 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------- 377 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------------------
Confidence 89999999999999999997765 66788999999999542
Q ss_pred CCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHH
Q 037455 387 NRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVK 466 (755)
Q Consensus 387 ~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~ 466 (755)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeee
Q 037455 467 KYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLL 546 (755)
Q Consensus 467 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 546 (755)
.+.++.||+||+|. ||.|||.+|+|+|.+... ....+
T Consensus 378 ------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~il 414 (501)
T KOG1153|consen 378 ------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAIL 414 (501)
T ss_pred ------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chhee
Confidence 24789999999999 999999999999998643 67899
Q ss_pred ccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHcccc
Q 037455 547 SGTSMSCPHAAAIAALVKATHRD---------WSSAAIRSALMTTAD 584 (755)
Q Consensus 547 sGTSmAaP~VAG~aALl~q~~p~---------ls~~~ik~~L~~TA~ 584 (755)
||||||+|||||++|..+.++|. .++.++|..+..=..
T Consensus 415 SGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 415 SGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99999999999999999999883 378888877766544
|
|
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=375.06 Aligned_cols=264 Identities=27% Similarity=0.287 Sum_probs=202.1
Q ss_pred CCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCC
Q 037455 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTD 208 (755)
Q Consensus 129 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 208 (755)
.+|..+++|+||+|||||||||++||+|.+.... ..+.. ....+.+... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~~~------~~~~~~~~~~---------~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGYDP------AVNGYNFVPN---------VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCccc------ccCCcccccc---------cCC
Confidence 3799999999999999999999999999865110 00000 0000001000 001
Q ss_pred CCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEE
Q 037455 209 DYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIM 288 (755)
Q Consensus 209 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVI 288 (755)
......|..+|||||||||+|...+.....|++ .+.|+||+|+|+.+|++...+. ....+++++|+|+++.|++||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~g~~Vi 128 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYY--VGDDAVAAAIVYAADNGAVIL 128 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHcCCcEE
Confidence 122345678999999999999764433222222 2367999999999999987654 678889999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhC-------CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCce
Q 037455 289 SLSLAFPETTFDENPIAIGAFAALKR-------GIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 289 n~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
|||||......+...+..++..+.++ |+++|+||||++......+...+++|+|++.+.
T Consensus 129 n~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------- 194 (273)
T cd07485 129 QNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------- 194 (273)
T ss_pred EecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------
Confidence 99999865434556677788888888 999999999999887777888899999997321
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC-c
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV-D 520 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~-~ 520 (755)
.+.++.||++|+.. ||+|||. .
T Consensus 195 -------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~ 217 (273)
T cd07485 195 -------------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGT 217 (273)
T ss_pred -------------------------------------------------CCCcCccccCCCce--------EEEeCCCCc
Confidence 13567899999876 9999999 8
Q ss_pred EEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 037455 521 ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD-WSSAAIRSALMTT 582 (755)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-ls~~~ik~~L~~T 582 (755)
|+++.+.... .....|..++|||||||+|||++|||+|++|. +++.|||++|++|
T Consensus 218 i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 218 ILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9988765411 11137999999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=370.55 Aligned_cols=257 Identities=32% Similarity=0.493 Sum_probs=204.0
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|+||+|+|||+|||++||+|.+.... .+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc----------cCCCCCCCC
Confidence 89999999999999999999864111 01111100 112335677
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC----CCcEEEEcc
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD----GVDIMSLSL 292 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~----g~dVIn~Sl 292 (755)
.+|||||||||+|...+. .+.+.||||+|+|+.+|+++..+. ....++++||+|+++. +++||||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGS--GSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCC--ccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 899999999999986432 223589999999999999988775 6788999999999998 999999999
Q ss_pred CCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeec
Q 037455 293 AFPET-TFDENPIAIGAFAALKRGIFVACSAGNSGPRPY--SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369 (755)
Q Consensus 293 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~ 369 (755)
|.... ....+.+..+++++.++|+++|+||||++.... ..+...+++|+||+...+..
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 175 (264)
T cd07487 115 GAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------- 175 (264)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------
Confidence 98763 445678888999999999999999999998765 55677889999998432110
Q ss_pred cCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCC
Q 037455 370 YPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEV 449 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~ 449 (755)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCC
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~ 529 (755)
....++.||++||+.+ +++||||+|||++|+++.+...
T Consensus 176 ----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~ 213 (264)
T cd07487 176 ----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGG 213 (264)
T ss_pred ----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccc
Confidence 0024688999999986 8999999999999999866432
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
.. .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 214 ~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 214 NP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 11 1112247899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=374.36 Aligned_cols=266 Identities=23% Similarity=0.184 Sum_probs=186.7
Q ss_pred cEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
.+|||||||||.+||+|.+. +.....+... ...+.|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-------------~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-------------PGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhh---------------------------hccccccccC-------------CCCcCCCCCC
Confidence 37999999999999999743 1111111100 0015678999
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCC--CCCCChhHHHHHHHHHHhCC---CcEEEEccCC
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND--NLAAAETDVLAGMDQAIADG---VDIMSLSLAF 294 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~~~~i~~ai~~a~~~g---~dVIn~SlG~ 294 (755)
||||||||++..... ....|+||+|+|+.+||+...+ ....+..++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 999999999764321 1237999999999999998864 11156778899999999853 4999999999
Q ss_pred CCCCCCC--CHHHHHHHH-HHhCCcEEEEecCCCCCCCCc------------cccCCCceEEeccccccceeeEEEEeCC
Q 037455 295 PETTFDE--NPIAIGAFA-ALKRGIFVACSAGNSGPRPYS------------IRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 295 ~~~~~~~--~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
....... ..+..++++ +.++|++||+||||++..... .+..++++|+|||.+........
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 7532222 245555544 568899999999999977543 24567899999985432210000
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
..
T Consensus 188 ---------------------------------s~--------------------------------------------- 189 (291)
T cd04847 188 ---------------------------------AR--------------------------------------------- 189 (291)
T ss_pred ---------------------------------cc---------------------------------------------
Confidence 00
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
.+.......+.||+|||..+ +.+||||+|||+
T Consensus 190 ----------------------------------------------~~~~~~~~~~~fs~~Gp~~~--~~~KPDl~apG~ 221 (291)
T cd04847 190 ----------------------------------------------YSAVGPAPAGATTSSGPGSP--GPIKPDVVAFGG 221 (291)
T ss_pred ----------------------------------------------ccccccccCCCccccCCCCC--CCcCCcEEeeCC
Confidence 00000112344999999986 899999999999
Q ss_pred cEEeeecCCCCCC-----CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 520 DILAAWVPNNPWQ-----PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 520 ~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
+|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 222 NLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9988644211000 0000112248999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=361.93 Aligned_cols=233 Identities=34% Similarity=0.496 Sum_probs=195.2
Q ss_pred CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCC
Q 037455 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDD 209 (755)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (755)
.|..+++|+||+|||||+||+++||+|.++ +...++|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999753 2222222221
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC-----C
Q 037455 210 YDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD-----G 284 (755)
Q Consensus 210 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~-----g 284 (755)
.+..|..+|||||||||+++. .||||+|+|+.+|+++..+. ...++++++++++++. +
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~--~~~~~~~~ai~~~~~~~~~~~~ 119 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGS--GTLSGIIAGLEWVANDATKRGK 119 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHhcccccCC
Confidence 114578899999999999863 69999999999999988765 6788999999999987 4
Q ss_pred CcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCceEE
Q 037455 285 VDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEELT 363 (755)
Q Consensus 285 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 363 (755)
++|||||||... ...+..++..+.++|+++|+||||+|... ...+...+++|+||+.+.
T Consensus 120 ~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------- 179 (255)
T cd04077 120 PAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------- 179 (255)
T ss_pred CeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------
Confidence 899999999864 45677788889999999999999999765 455678899999997431
Q ss_pred EeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC
Q 037455 364 VIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ 443 (755)
Q Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~ 443 (755)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEe
Q 037455 444 HLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523 (755)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~s 523 (755)
.+.++.||++||.. ||+|||.+|.+
T Consensus 180 -----------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 180 -----------------------------------------------DDARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred -----------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEe
Confidence 12467899999986 89999999999
Q ss_pred eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccc
Q 037455 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADV 585 (755)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~ 585 (755)
+..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 877432 289999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=365.85 Aligned_cols=206 Identities=30% Similarity=0.348 Sum_probs=167.3
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH----------h
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI----------A 282 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~----------~ 282 (755)
..+..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ .+.+++++|++|++ .
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~---~~~~~i~~a~~~a~~~~~~~~~~~~ 135 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCG---GTLSDIVDGMRWAAGLPVPGVPVNP 135 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCC---CcHHHHHHHHHHHhccCcCCCcccC
Confidence 4567899999999999986432 12 38999999999999998877 68889999999998 4
Q ss_pred CCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCce
Q 037455 283 DGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 283 ~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
++++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+||+.+.
T Consensus 136 ~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------- 199 (285)
T cd07496 136 NPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL-------------- 199 (285)
T ss_pred CCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC--------------
Confidence 5789999999986421 45778888899999999999999999876 566778899999997321
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcE
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDI 521 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I 521 (755)
.+.++.||++|+.. ||+|||++|
T Consensus 200 -------------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i 222 (285)
T cd07496 200 -------------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDC 222 (285)
T ss_pred -------------------------------------------------CCCcccccCCCCCC--------CEEeCCCCc
Confidence 23568899999976 999999999
Q ss_pred EeeecCCCCCC--CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 522 LAAWVPNNPWQ--PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 522 ~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 223 ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 98876532110 00111122478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=361.17 Aligned_cols=242 Identities=31% Similarity=0.420 Sum_probs=201.4
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|..+ +|+||+|||||+|||++||+|... ++...+++.+.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 35688888 999999999999999999998422 22223333322
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++..+. +...+++++|+++++.+++
T Consensus 61 ---~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 61 ---DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGS--GSLADIANGIRYAADKGAK 127 (260)
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCe
Confidence 1225578899999999999875332 22489999999999999987665 7788999999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEee
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIG 366 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g 366 (755)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------- 185 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------- 185 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------------
Confidence 9999999863 445677788888899999999999999888888889999999997321
Q ss_pred eeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC
Q 037455 367 KSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS 446 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~ 446 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
.+.++.||++|+.. |++|||.+|+++.+
T Consensus 186 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~ 213 (260)
T cd07484 186 --------------------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTP 213 (260)
T ss_pred --------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecC
Confidence 12457899999865 99999999999876
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~ 586 (755)
.. .|..++|||||||+|||++||++|++| +++.+||++|++||+++
T Consensus 214 ~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 DG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 63 899999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=359.44 Aligned_cols=253 Identities=35% Similarity=0.398 Sum_probs=188.2
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||+|||++||+|.+. +...++|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11112222110 011223556789
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||+|+..+ +...||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||.....
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~---~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG---GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC---CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 999999999998541 2247999999999999998776 6889999999999999999999999986533
Q ss_pred CCCCHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCc
Q 037455 299 FDENPIAIGAFAALK-RGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 377 (755)
.+++..+++.+.+ +|+++|+||||+|......+...+++|+||+.+.........
T Consensus 113 --~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s---------------------- 168 (254)
T cd07490 113 --EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS---------------------- 168 (254)
T ss_pred --CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc----------------------
Confidence 5666666666654 699999999999988777788899999999854321100000
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEE
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAV 457 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i 457 (755)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCC
Q 037455 458 NLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537 (755)
Q Consensus 458 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (755)
.........++.+|... ....|||++|||.+|+++.....
T Consensus 169 -------------------------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~-------- 208 (254)
T cd07490 169 -------------------------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN-------- 208 (254)
T ss_pred -------------------------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC--------
Confidence 00001122233333332 25789999999999998652211
Q ss_pred CcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 209 -~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 -GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1237999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=363.09 Aligned_cols=252 Identities=25% Similarity=0.314 Sum_probs=182.4
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+++++|+||+|||||||||..|| |...++. + ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4679999999999999999999999998 7543110 0 00 00000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
......|+.||||||||++ .||||+|+|+.+|++++ ..+++++||+||++++++
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~------~~~~~~~ai~~a~~~g~d 106 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP------DLVNSVGAFKKAISLSPD 106 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC------CcHHHHHHHHHHHhcCCC
Confidence 0112467889999999875 69999999999999864 456789999999999999
Q ss_pred EEEEccCCCCCCC----------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEE
Q 037455 287 IMSLSLAFPETTF----------DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVT 356 (755)
Q Consensus 287 VIn~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~ 356 (755)
|||||||...... ....+..++.++.++|++||+||||++. .+|+..|++|+||+++.+..
T Consensus 107 VIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~------ 177 (298)
T cd07494 107 IISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED------ 177 (298)
T ss_pred EEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC------
Confidence 9999999864211 1235777888899999999999999974 46888999999998532210
Q ss_pred eCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 037455 357 LGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAI 436 (755)
Q Consensus 357 ~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i 436 (755)
+..
T Consensus 178 ---g~~-------------------------------------------------------------------------- 180 (298)
T cd07494 178 ---GAR-------------------------------------------------------------------------- 180 (298)
T ss_pred ---Ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred EecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCee--
Q 037455 437 FSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDI-- 514 (755)
Q Consensus 437 ~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI-- 514 (755)
......+.|+|. ..+++.|||+
T Consensus 181 ----------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~ 204 (298)
T cd07494 181 ----------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCG 204 (298)
T ss_pred ----------------------------------------------------cccccccCcccc----cCCCCccCcccc
Confidence 000000112111 1236677877
Q ss_pred --------------EeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 037455 515 --------------LAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALM 580 (755)
Q Consensus 515 --------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~ 580 (755)
+|||..|.++..... .. ......|..++|||||||||||++|||+|++|.|+++|||.+|+
T Consensus 205 ~~g~~~~~~~~~~~~APG~~i~~~~~~~~-~~----~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~ 279 (298)
T cd07494 205 LVGMLPHAAYLMLPVPPGSQLDRSCAAFP-DG----TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLN 279 (298)
T ss_pred ccCcCCcccccccccCCCcceeccccCCC-CC----CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 379999876553210 00 01124799999999999999999999999999999999999999
Q ss_pred cccccccc
Q 037455 581 TTADVLDN 588 (755)
Q Consensus 581 ~TA~~~~~ 588 (755)
+||+++..
T Consensus 280 ~ta~~~~~ 287 (298)
T cd07494 280 KTARDVTK 287 (298)
T ss_pred HhCcccCC
Confidence 99998753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=362.00 Aligned_cols=279 Identities=28% Similarity=0.298 Sum_probs=200.6
Q ss_pred CCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCC
Q 037455 133 AAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDS 212 (755)
Q Consensus 133 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (755)
++++|+||+|||||||||++||+|.+.... +.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc----cCcccEEEeeccCC----------------C
Confidence 578999999999999999999999764210 001 12233333322221 1
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEcc
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL 292 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~Sl 292 (755)
..|..+|||||||||+|+..+.... ..+.||||+|+|+.+|++...+. .....++..+++++.+.+++||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGN-LSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCcc-ccCCccHHHHHHHHHHhCCEEEeccC
Confidence 2278999999999999986543211 13489999999999999887652 14566788999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEEeee
Q 037455 293 AFPETTFDENPIAIGAFAAL-K-RGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367 (755)
Q Consensus 293 G~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~ 367 (755)
|...... ......++.++. + +|+++|+||||+|.... ..+...+++|+||+.+.......
T Consensus 124 G~~~~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~-------------- 188 (293)
T cd04842 124 GSPVNNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG-------------- 188 (293)
T ss_pred CCCCccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc--------------
Confidence 9875321 233444444443 3 79999999999997764 56778899999998653321000
Q ss_pred eccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC
Q 037455 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~ 447 (755)
..|..
T Consensus 189 -----------------------~~~~~---------------------------------------------------- 193 (293)
T cd04842 189 -----------------------EGGLG---------------------------------------------------- 193 (293)
T ss_pred -----------------------ccccc----------------------------------------------------
Confidence 00000
Q ss_pred CCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecC
Q 037455 448 EVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVP 527 (755)
Q Consensus 448 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~ 527 (755)
.....+.++.||++||+.+ +++||||+|||++|+++.+.
T Consensus 194 ---------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~ 232 (293)
T cd04842 194 ---------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSG 232 (293)
T ss_pred ---------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCC
Confidence 0112346899999999986 89999999999999999755
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 037455 528 NNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH-----R---DWSSAAIRSALMTTAD 584 (755)
Q Consensus 528 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~ls~~~ik~~L~~TA~ 584 (755)
... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 233 ~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 233 GGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 310 011112478999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=360.01 Aligned_cols=265 Identities=31% Similarity=0.380 Sum_probs=183.5
Q ss_pred cCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCC
Q 037455 132 PAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYD 211 (755)
Q Consensus 132 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 211 (755)
..+++|+||+|||||+|||.+||+|.+.. +..++|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC--------------C
Confidence 45789999999999999999999997531 111122211 1
Q ss_pred CCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEc
Q 037455 212 SPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLS 291 (755)
Q Consensus 212 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~S 291 (755)
.+.|..+|||||||||+|+..+ +...||||+|+|+.+|++...+. ....++++||+|+++.|++|||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~--~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGG--GGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCC--CcHHHHHHHHHHHHHcCCCEEEec
Confidence 2457889999999999997543 22379999999999999976654 677789999999999999999999
Q ss_pred cCCCCCCC----------CCCHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----cCCCceEE
Q 037455 292 LAFPETTF----------DENPIAIGAFAA---------------LKRGIFVACSAGNSGPRPYSIR-----NGAPWITA 341 (755)
Q Consensus 292 lG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vit 341 (755)
||...... ....+......+ .++|+++|+||||++....... ...+.+++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 99854111 111222222233 6789999999999986533211 11122222
Q ss_pred eccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHH
Q 037455 342 VGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421 (755)
Q Consensus 342 Vga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 421 (755)
|++..
T Consensus 190 V~~V~--------------------------------------------------------------------------- 194 (297)
T cd07480 190 VAAVG--------------------------------------------------------------------------- 194 (297)
T ss_pred EEEEC---------------------------------------------------------------------------
Confidence 22210
Q ss_pred HHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCC
Q 037455 422 QQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRG 501 (755)
Q Consensus 422 ~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (755)
..+....|+++.
T Consensus 195 --------------------------------------------------------------------~~~~~~~~~~~~ 206 (297)
T cd07480 195 --------------------------------------------------------------------ALGRTGNFSAVA 206 (297)
T ss_pred --------------------------------------------------------------------CCCCCCCccccC
Confidence 001112233333
Q ss_pred CCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHc
Q 037455 502 PSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMT 581 (755)
Q Consensus 502 p~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~ 581 (755)
+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 32 245889999999999988764 8999999999999999999999999999998888877774
Q ss_pred cccccccCCcccccCCCCCCCCCCcccccccCcC
Q 037455 582 TADVLDNAYGMITDKSTGVAGTPLDFGAGHINPN 615 (755)
Q Consensus 582 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~ 615 (755)
........ . ......+..+|+|++++.
T Consensus 270 ~l~~~~~~-~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 270 RLTAARTT-Q------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhhcccC-C------CCCCCChhhcCCceeecC
Confidence 32221000 0 022344568999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=349.39 Aligned_cols=240 Identities=28% Similarity=0.333 Sum_probs=188.5
Q ss_pred cEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
|+|||||+|||++||+|.+.. ++...+++... ...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 789999999999999997520 11111111111 1124578899
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCC-C
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET-T 298 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~-~ 298 (755)
||||||||+|+..+. ..+.||||+|+|+.+|++...+. +...++.++++|+++.+++|||||||.... .
T Consensus 43 GT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~ 112 (242)
T cd07498 43 GTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGY--AYWSDIAQAITWAADNGADVISNSWGGSDSTE 112 (242)
T ss_pred HHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc
Confidence 999999999975322 22489999999999999987654 678899999999999999999999998653 2
Q ss_pred CCCCHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCc
Q 037455 299 FDENPIAIGAFAALK-RGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 377 (755)
.....+..++..+.+ +|+++|+||||+|......++..+++|+||+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------ 162 (242)
T cd07498 113 SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------------ 162 (242)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC------------------------------
Confidence 234567777777888 9999999999999887767888999999998331
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEE
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAV 457 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i 457 (755)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCC
Q 037455 458 NLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537 (755)
Q Consensus 458 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (755)
.+.+++||++||.. |++|||+++.......... ..
T Consensus 163 ---------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~ 197 (242)
T cd07498 163 ---------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GD 197 (242)
T ss_pred ---------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----cc
Confidence 13467899999976 9999999998875442111 11
Q ss_pred CcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 198 ~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 198 YPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 122478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=347.11 Aligned_cols=250 Identities=28% Similarity=0.392 Sum_probs=190.0
Q ss_pred CccEEEEEcccccCCCCCCcCCCCCCCCcccccc---eeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCC
Q 037455 138 SDIIVGILDTGIWPESKSYDDRGMPPVPERWRGA---CEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPR 214 (755)
Q Consensus 138 ~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~---~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (755)
+||+|||||||||++||+|.++. |... +..+... +. ..|.+....+ +......++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~----~~------~~~~~~~~~~----~~~~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDD----DG------NGYVDDIYGW----NFVNNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCccc----CC------CCcccCCCcc----cccCCCCCCC
Confidence 68999999999999999998642 2211 1111100 00 0011110000 0011233467
Q ss_pred CCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCC
Q 037455 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294 (755)
Q Consensus 215 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 294 (755)
|..+|||||||||+|...+. ..+.||||+|+|+.+|++...+. ++..+++++|+++++.+++|||+|||.
T Consensus 61 d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~vin~S~G~ 130 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGS--GTTSDAIKAIDYAVDMGAKIINNSWGG 130 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 88999999999999985432 22489999999999999987765 788899999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC---Ccccc--CCCceEEeccccccceeeEEEEeCCceEEEeeeec
Q 037455 295 PETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP---YSIRN--GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369 (755)
Q Consensus 295 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~ 369 (755)
... ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+
T Consensus 131 ~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~----------------------- 184 (259)
T cd07473 131 GGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD----------------------- 184 (259)
T ss_pred CCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-----------------------
Confidence 633 56778888899999999999999998762 23333 347788888632
Q ss_pred cCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCC
Q 037455 370 YPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEV 449 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~ 449 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCC
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~ 529 (755)
..+.++.||++||. +||+.|||.++++..+..
T Consensus 185 ----------------------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~- 216 (259)
T cd07473 185 ----------------------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPGG- 216 (259)
T ss_pred ----------------------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCCC-
Confidence 11345679999985 459999999999976553
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
.|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 217 ------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 ------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=350.56 Aligned_cols=244 Identities=19% Similarity=0.181 Sum_probs=173.1
Q ss_pred CCCCcCC-CCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 128 AGVWPAA-GFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 128 ~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
..+|+.. ..|+||+|+|||+|||.+||||.++... +..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 4578764 4589999999999999999999754110 0000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh----
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA---- 282 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~---- 282 (755)
..+.|+++|||||||||||..+ ..| +.||||+|+|+.+|+++ .++++++|++|++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~ 103 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSP 103 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCC
Confidence 0145778999999999998631 112 48999999999999975 2234555666655
Q ss_pred CCCcEEEEccCCCCCCC------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc------------c-cCCCceEEec
Q 037455 283 DGVDIMSLSLAFPETTF------DENPIAIGAFAALKRGIFVACSAGNSGPRPYSI------------R-NGAPWITAVG 343 (755)
Q Consensus 283 ~g~dVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVg 343 (755)
.++.+||||||...... ....+..++.++.++|+++|+||||++...... + ...+++|+||
T Consensus 104 ~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~Vg 183 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVG 183 (277)
T ss_pred CCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEE
Confidence 45678899999864211 123455677788899999999999998653211 1 1124567776
Q ss_pred cccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHH
Q 037455 344 AGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQ 423 (755)
Q Consensus 344 a~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 423 (755)
|.+.+
T Consensus 184 A~~~~--------------------------------------------------------------------------- 188 (277)
T cd04843 184 AGSST--------------------------------------------------------------------------- 188 (277)
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 63210
Q ss_pred HHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCC
Q 037455 424 LEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPS 503 (755)
Q Consensus 424 ~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 503 (755)
....++.||++||.
T Consensus 189 ------------------------------------------------------------------~~~~~~~fSn~G~~ 202 (277)
T cd04843 189 ------------------------------------------------------------------TGHTRLAFSNYGSR 202 (277)
T ss_pred ------------------------------------------------------------------CCCccccccCCCCc
Confidence 01136899999997
Q ss_pred CCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHH
Q 037455 504 LRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----T-HRDWSSAAIRSA 578 (755)
Q Consensus 504 ~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ls~~~ik~~ 578 (755)
. ||+|||++|+++.+....... ......|..++|||||||||||++|||++ + +|+|+++|||++
T Consensus 203 v--------di~APG~~i~s~~~~~~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~ 271 (277)
T cd04843 203 V--------DVYGWGENVTTTGYGDLQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMREL 271 (277)
T ss_pred c--------ceEcCCCCeEecCCCCccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 6 999999999999876432100 11112457899999999999999999975 3 499999999999
Q ss_pred HHcccc
Q 037455 579 LMTTAD 584 (755)
Q Consensus 579 L~~TA~ 584 (755)
|++|+.
T Consensus 272 L~~t~~ 277 (277)
T cd04843 272 LTATGT 277 (277)
T ss_pred HHhcCC
Confidence 999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=338.27 Aligned_cols=227 Identities=37% Similarity=0.538 Sum_probs=186.9
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||+||+++||+|.+. +...++|.... . ....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~-----------~-~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD-----------N-NDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC-----------C-CCCCCCCC
Confidence 799999999999999999753 11122222210 0 23557889
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||++..... .+.|+||+|+|+.+|+++..+. ....+++++++++++.|++|||||||...
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~--~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-- 108 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGS--GTYSDIIAGIEWAIENGMDIINMSLGGPS-- 108 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCCEEEECCccCC--
Confidence 9999999999975332 2489999999999999988765 67789999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCC
Q 037455 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSI--RNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFV 376 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~ 376 (755)
....+..++..+.++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 109 -~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 158 (229)
T cd07477 109 -DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS----------------------------- 158 (229)
T ss_pred -CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-----------------------------
Confidence 234567777788999999999999999776654 788899999997431
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEE
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVA 456 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~ 456 (755)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCC
Q 037455 457 VNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRD 536 (755)
Q Consensus 457 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~ 536 (755)
.+.++.||++|+.. |+.|||++|+++++..
T Consensus 159 ----------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------- 188 (229)
T cd07477 159 ----------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------- 188 (229)
T ss_pred ----------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC--------
Confidence 12456899999865 9999999999998764
Q ss_pred CCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 537 DYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 537 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -----~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=352.60 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=107.1
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
.|+|||||||||++||+|.+.-.. ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999853110 000010000000000011111234567899
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||+|+|+... .||||+|+|+.+|+++..+. ....+++++|++|++++++|||||||.....
T Consensus 55 HGT~vAgiia~~~~~------------~GvAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 55 HGTAVAGQIAANGNI------------KGVAPGIGIVSYRVFGSCGS--AESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred cHhHHHHHHhcCCCC------------ceeCCCCEEEEEEeecCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 999999999986421 59999999999999988773 4788999999999999999999999985422
Q ss_pred CC--------CCHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 037455 299 FD--------ENPIAIGAFAALKRGIFVACSAGNSGPRP 329 (755)
Q Consensus 299 ~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 329 (755)
.. .+.+..++..+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 13456667778889999999999998653
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=358.55 Aligned_cols=274 Identities=32% Similarity=0.456 Sum_probs=208.1
Q ss_pred EEEEEcccccCCCCCCc-CCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 141 IVGILDTGIWPESKSYD-DRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 141 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
+|||||||||++||+|. ++ + ...++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~------------------~----~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN------------------F----IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT------------------E----EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC------------------c----ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 112344455555442 112235678899
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH-hCCCcEEEEccCCCC--
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI-ADGVDIMSLSLAFPE-- 296 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~-- 296 (755)
||||||||+|.. . .+. ....|+||+|+|+.+|++...+ ....+++.+|++++ +.+++|||||||...
T Consensus 49 GT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~~---~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNSG---GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTTS---EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred cchhhhhccccc-c-ccc-----cccccccccccccccccccccc---cccccccchhhhhhhccCCccccccccccccc
Confidence 999999999986 2 111 2238999999999999987766 67888999999999 899999999998832
Q ss_pred -CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCC
Q 037455 297 -TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPE 372 (755)
Q Consensus 297 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 372 (755)
.....+.+..+.+.+.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~-------------------------- 172 (282)
T PF00082_consen 119 PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD-------------------------- 172 (282)
T ss_dssp SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE--------------------------
T ss_pred cccccccccccccccccccCcceeeccccccccccccccccccccccccccccc--------------------------
Confidence 1122234556666888999999999999987654 3556668889998732
Q ss_pred CCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccc
Q 037455 373 NLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNM 452 (755)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~ 452 (755)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCC
Q 037455 453 PFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQ 532 (755)
Q Consensus 453 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~ 532 (755)
..+.++.||++|+... .+++||||+|||.+|.++++....
T Consensus 173 -------------------------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 173 -------------------------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp -------------------------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES--
T ss_pred -------------------------------------cccccccccccccccc-cccccccccccccccccccccccc--
Confidence 1125578999976653 379999999999999998876521
Q ss_pred CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccccccc
Q 037455 533 PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612 (755)
Q Consensus 533 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~i 612 (755)
..|..++|||||||+|||++||++|++|++++.+||++|++||+++...+ .......||||+|
T Consensus 213 --------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~i 275 (282)
T PF00082_consen 213 --------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLI 275 (282)
T ss_dssp --------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE
T ss_pred --------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChh
Confidence 25889999999999999999999999999999999999999999886221 2334558899999
Q ss_pred CcCccCC
Q 037455 613 NPNKAMD 619 (755)
Q Consensus 613 n~~~Av~ 619 (755)
|+.+|++
T Consensus 276 n~~~a~~ 282 (282)
T PF00082_consen 276 NAEKALN 282 (282)
T ss_dssp -HHHHHH
T ss_pred CHHHHhC
Confidence 9999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=340.61 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=119.4
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
+++|+|||||||||++||+|.++ +...++|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999753 12222232221000 0001123468
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCC----CCChhHHHHHHHHHHhCCCcEEEEcc
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNL----AAAETDVLAGMDQAIADGVDIMSLSL 292 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~----~~~~~~i~~ai~~a~~~g~dVIn~Sl 292 (755)
.||||||||||+ |+||+|+|+.+||++..+.. .++...+++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999994 79999999999999865521 25677899999999999999999999
Q ss_pred CCCCCCC---CCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccc
Q 037455 293 AFPETTF---DENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAG 345 (755)
Q Consensus 293 G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~ 345 (755)
|...... ....+..++.+|.++|+++|+||||+|.... ..+...+++|+|||.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 9864311 2467888888999999999999999997754 234667899999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=329.89 Aligned_cols=222 Identities=22% Similarity=0.210 Sum_probs=173.4
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||||||++||+|.+.-. ..+.+..+. .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~--------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLE--------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------ccccccccc--------cccCCCCCCCCCC
Confidence 79999999999999999985411 001110000 0011123557889
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||++ .+|+++|+.+|+++..+. +..+++++||+|++++|++|||||||.....
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGR--CNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 99999999974 459999999999987765 7888999999999999999999999986432
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCce
Q 037455 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSR 378 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~ 378 (755)
....+..++.++.++|+++|+||||++.... .+...+++|+|++...+.
T Consensus 106 -~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 106 -DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------
Confidence 2346777888888999999999999986543 367778899998732110
Q ss_pred eeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEe
Q 037455 379 EPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVN 458 (755)
Q Consensus 379 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~ 458 (755)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCC
Q 037455 459 LKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDY 538 (755)
Q Consensus 459 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 538 (755)
. .+.+++ ++|+.|||.+|+++.+..
T Consensus 155 ----------------------------------~---~~~~~~--------~~~~~apg~~i~~~~~~~---------- 179 (222)
T cd07492 155 ----------------------------------P---KSFWYI--------YVEFSADGVDIIAPAPHG---------- 179 (222)
T ss_pred ----------------------------------C---cccccC--------CceEEeCCCCeEeecCCC----------
Confidence 0 011122 449999999999988764
Q ss_pred cccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 539 LLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 539 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ---~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ---RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=347.37 Aligned_cols=248 Identities=21% Similarity=0.215 Sum_probs=180.0
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+.+++|+||+|+|||||||++||+|.++... ...++|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 456899999999999999999999999999754110 01122222110
Q ss_pred CCCCCCC--CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCC
Q 037455 207 TDDYDSP--RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADG 284 (755)
Q Consensus 207 ~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g 284 (755)
...+ .|..+|||||||||+|+..+.. ...||||+|+|+.+|++.... ....+..++.++.+ .
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~~~~~~-~ 138 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGDV----TDVVEAESLGLNPD-Y 138 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCcc----ccHHHHHHHhcccC-C
Confidence 0112 2778999999999999853321 138999999999999987643 33445566665554 4
Q ss_pred CcEEEEccCCCCCCC----CCCHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEecccccccee
Q 037455 285 VDIMSLSLAFPETTF----DENPIAIGAFAALK-----RGIFVACSAGNSGPRPYS----IRNGAPWITAVGAGTVDREF 351 (755)
Q Consensus 285 ~dVIn~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~ 351 (755)
++|||||||...... .......++.++.+ +|+++|+||||+|..... .....+++|+|||.+.
T Consensus 139 ~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~---- 214 (297)
T cd04059 139 IDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA---- 214 (297)
T ss_pred ceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC----
Confidence 699999999865221 12234444555543 699999999999973221 2235678888887321
Q ss_pred eEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcC
Q 037455 352 AAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSG 431 (755)
Q Consensus 352 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~g 431 (755)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCccc
Q 037455 432 AAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILK 511 (755)
Q Consensus 432 a~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lK 511 (755)
.+.++.||++|+..
T Consensus 215 -----------------------------------------------------------~g~~~~~s~~g~~~------- 228 (297)
T cd04059 215 -----------------------------------------------------------NGVRASYSEVGSSV------- 228 (297)
T ss_pred -----------------------------------------------------------CCCCcCCCCCCCcE-------
Confidence 23567899999987
Q ss_pred CeeEeCCCc-------EEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 512 PDILAPGVD-------ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 512 PDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
+++|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 229 -~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 -LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred -EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 89999987 766655420 126788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=331.17 Aligned_cols=243 Identities=26% Similarity=0.286 Sum_probs=185.5
Q ss_pred CCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCC
Q 037455 136 FGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRD 215 (755)
Q Consensus 136 ~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d 215 (755)
+|+||+|+|||+||+.+||+|.+..... ..+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------ccccccc---------cccCCCCCC
Confidence 5999999999999999999998642110 0000000 000123456
Q ss_pred CCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCC-CCCCChhHHHHHHHHHHhCCCcEEEEccCC
Q 037455 216 FFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND-NLAAAETDVLAGMDQAIADGVDIMSLSLAF 294 (755)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 294 (755)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ . .....+.++++++++.+++|||||||.
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGST--FSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcc--cchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 789999999999998543 2248999999999999998764 3 667788899999999999999999998
Q ss_pred CCCCC------------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------ccCCCceEEeccccccceeeE
Q 037455 295 PETTF------------DENPIAIGAFAALKRGIFVACSAGNSGPRPYSI---------RNGAPWITAVGAGTVDREFAA 353 (755)
Q Consensus 295 ~~~~~------------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~ 353 (755)
..... ..+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~----- 188 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN----- 188 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-----
Confidence 76221 345667777788899999999999998654332 2345678888874321
Q ss_pred EEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCce
Q 037455 354 HVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAA 433 (755)
Q Consensus 354 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~ 433 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCcccc--ccCCCCCCCCCCccc
Q 037455 434 GAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVAN--FSSRGPSLRSPWILK 511 (755)
Q Consensus 434 g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~g~lK 511 (755)
+.... ||++|+... .
T Consensus 189 ----------------------------------------------------------~~~~~~~~s~~~~~~~-----~ 205 (267)
T cd04848 189 ----------------------------------------------------------GTIASYSYSNRCGVAA-----N 205 (267)
T ss_pred ----------------------------------------------------------CCcccccccccchhhh-----h
Confidence 12223 488886543 3
Q ss_pred CeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 512 PDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 512 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
++++|||.+|+++.+... ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 206 ~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 206 WCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred heeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 479999999999887421 27889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=324.83 Aligned_cols=354 Identities=21% Similarity=0.311 Sum_probs=259.3
Q ss_pred CCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceE------EEeccceeEEEEEeC-----HHHHHHhhc
Q 037455 30 RKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHL------YTYNHVMDGFSAVLS-----KNQLEQLQK 98 (755)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~------~~y~~~~ng~s~~l~-----~~~~~~L~~ 98 (755)
+..|||.|+.... .+.++..+++.|+...-. ..+++ -+|..-|.-+-++-. .-+|++|..
T Consensus 49 e~EyIv~F~~y~~---Ak~r~syi~skl~gS~Vt------nWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~ 119 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP---AKDRRSYIESKLRGSGVT------NWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEM 119 (1033)
T ss_pred cceeEEEeccccc---chHHHHHHHHHhhcCCCC------ceeEeeccCccccCCCccceEEEeccCccchhheeeehhc
Confidence 5679999997542 234556666666533311 22332 344444544444433 235889999
Q ss_pred CCCeEEEEeceeeccccc---------------------cC---------Cccccc------------cccCCCCcCCCC
Q 037455 99 MPGHHATYLESFGHLHTT---------------------RT---------PQFLGL------------KKHAGVWPAAGF 136 (755)
Q Consensus 99 ~~~V~~v~~~~~~~~~~~---------------------~~---------~~~~g~------------~~~~~~~~~~~~ 136 (755)
+|+|+.|.|.+.+.+-.. .+ +..++- -+++-+|.+|++
T Consensus 120 hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyT 199 (1033)
T KOG4266|consen 120 HPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYT 199 (1033)
T ss_pred CCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhcccc
Confidence 999999999887654100 00 000110 013458999999
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|++|+|||.|||+.-+||-|+.- .-...+++. ..-.|.
T Consensus 200 Ga~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD~ 237 (1033)
T KOG4266|consen 200 GAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDDN 237 (1033)
T ss_pred CCceEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------cccccC
Confidence 99999999999999999999731 000011111 123467
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCC
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 296 (755)
-||||.|||+|||... ..|.||+++|+++|||-+..- .+.+++++|+.||+...+||+|+|+|++
T Consensus 238 lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qV--SYTSWFLDAFNYAI~~kidvLNLSIGGP- 302 (1033)
T KOG4266|consen 238 LGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQV--SYTSWFLDAFNYAIATKIDVLNLSIGGP- 302 (1033)
T ss_pred cccceeEeeeeccchh------------hcccCCccceeEEEeecccee--ehhhHHHHHHHHHHhhhcceEeeccCCc-
Confidence 8999999999999853 279999999999999987765 7889999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCC--CceEEeccccccceeeEEEEeCCceEEEeeeeccCCCC
Q 037455 297 TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGA--PWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENL 374 (755)
Q Consensus 297 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~ 374 (755)
++.+.|+-.-+..+..++|++|.|+||+|+-.++..+.+ ..+|.||-
T Consensus 303 -DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------ 351 (1033)
T KOG4266|consen 303 -DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------ 351 (1033)
T ss_pred -ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc------------------------------
Confidence 466677776677888899999999999999888776543 33444442
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccE
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPF 454 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~ 454 (755)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCC----CCCcccCeeEeCCCcEEeeecCCCC
Q 037455 455 VAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLR----SPWILKPDILAPGVDILAAWVPNNP 530 (755)
Q Consensus 455 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~g~lKPDI~APG~~I~sa~~~~~~ 530 (755)
....+.++.|||||-+.. ..||+||||++-|.+|.......
T Consensus 352 ---------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-- 396 (1033)
T KOG4266|consen 352 ---------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-- 396 (1033)
T ss_pred ---------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc--
Confidence 123468899999996532 24899999999999997654443
Q ss_pred CCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCc
Q 037455 531 WQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----THRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLD 606 (755)
Q Consensus 531 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 606 (755)
+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-+.
T Consensus 397 -----------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-------------NMfE 452 (1033)
T KOG4266|consen 397 -----------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-------------NMFE 452 (1033)
T ss_pred -----------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------chhh
Confidence 788999999999999999999866 334568999999999999998632 3369
Q ss_pred ccccccCcCccCC
Q 037455 607 FGAGHINPNKAMD 619 (755)
Q Consensus 607 ~G~G~in~~~Av~ 619 (755)
||+|++|+.++.+
T Consensus 453 QGaGkldLL~syq 465 (1033)
T KOG4266|consen 453 QGAGKLDLLESYQ 465 (1033)
T ss_pred ccCcchhHHHHHH
Confidence 9999999988865
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=310.71 Aligned_cols=344 Identities=24% Similarity=0.258 Sum_probs=228.9
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCC
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 296 (755)
.-|||||||||+|+...... ..||||+|+|+++++.+..-....+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 46999999999999765422 3799999999999997654322245667889999999999999999999876
Q ss_pred -CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc---CCCceEEeccccccceeeEEEEeCCceEEEeeeeccCC
Q 037455 297 -TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRN---GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPE 372 (755)
Q Consensus 297 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 372 (755)
-+.....++..-+.+.++|+++|+||||.|+...+++. ...++|.|||--.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 44555666666656668899999999999998876653 34578888872111000
Q ss_pred CCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccc
Q 037455 373 NLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNM 452 (755)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~ 452 (755)
...|.++
T Consensus 441 ---~a~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ---QAEYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred ---Hhhhhhh----------------------------------------------------------------------
Confidence 0000000
Q ss_pred cEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCC
Q 037455 453 PFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQ 532 (755)
Q Consensus 453 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~ 532 (755)
.+-...+..+|||||+.| |.+--.|+|||+-|-+- |...
T Consensus 448 -----------------------------------e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~t--- 486 (1304)
T KOG1114|consen 448 -----------------------------------EPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQYT--- 486 (1304)
T ss_pred -----------------------------------ccCCCCccccccCCCCcC--CCcceEEecCCccccCC-chhh---
Confidence 011234678999999997 88899999999988653 2211
Q ss_pred CCCCCCcccceeeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccc
Q 037455 533 PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT----HRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFG 608 (755)
Q Consensus 533 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 608 (755)
-..-..|+|||||+|+++|.+|||++. +-.+||..||.+|++||.++.+. .++.||
T Consensus 487 -------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~faqG 546 (1304)
T KOG1114|consen 487 -------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFAQG 546 (1304)
T ss_pred -------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhccC
Confidence 125679999999999999999998654 67899999999999999998532 468999
Q ss_pred ccccCcCccCCCCeEEEccccccccCCCCCCCCCcceeeeecCCCCceEEEE-EE-EEecCCCCceEEEEEEcC--CC--
Q 037455 609 AGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFIIILNNTNTASFTFK-RV-LTNVADTKSAYTAAVKAP--AG-- 682 (755)
Q Consensus 609 ~G~in~~~Av~~~lv~~~~~~~~~~~~~~~~ln~~s~~~~~~~~~~~~~~~~-~t-v~N~~~~~~ty~~~~~~~--~g-- 682 (755)
.|+|++++|.+ |+++.. . ..+.-|.+ |.+...+.+ ++-+. |. +.+ ..+..|++.+++. .|
T Consensus 547 ~GmlqVdkAyE----yL~q~~-~---~f~~~l~f--~~v~VgN~~--srGIyLRep~~~--~~p~e~~i~VePiF~~~~e 612 (1304)
T KOG1114|consen 547 QGMLQVDKAYE----YLAQSD-F---SFPNALGF--INVNVGNSC--SRGIYLREPTQV--CSPSEHTIGVEPIFENGEE 612 (1304)
T ss_pred cceeehhHHHH----HHHHhh-h---cCCcccee--EEEeecccc--ccceEecCCccc--CCccccceeccccccCccc
Confidence 99999999987 433310 0 00111111 122222111 00000 00 001 1123333333220 11
Q ss_pred ------------------cEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEee---CCceEEEe
Q 037455 683 ------------------MKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDV---NGKHLVRS 741 (755)
Q Consensus 683 ------------------~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~v~~ 741 (755)
-.|. -|+.+.+ .++.+.|.|+|++.. ...+ ..+++|.=.+. +..+..|+
T Consensus 613 ~~keki~Fe~~L~L~st~pwVq-~p~~l~l--~~~~R~i~VrVDpt~-----l~~G--~hy~eV~gyD~~~p~~gplFrI 682 (1304)
T KOG1114|consen 613 NEKEKISFEVQLSLASTQPWVQ-CPEYLML--ANQGRGINVRVDPTG-----LAPG--VHYTEVLGYDTANPSRGPLFRI 682 (1304)
T ss_pred cccccccceeeEeeecCCccee-Cchhhee--ccCCceeEEEECCcC-----CCCC--cceEEEEEeecCCcccCceEEe
Confidence 0121 2555555 578889999999987 3344 67777776554 35788999
Q ss_pred EEEEEE
Q 037455 742 PIVSAF 747 (755)
Q Consensus 742 P~~~~~ 747 (755)
|+-|..
T Consensus 683 PVTVi~ 688 (1304)
T KOG1114|consen 683 PVTVIK 688 (1304)
T ss_pred eeEEEc
Confidence 998765
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=289.28 Aligned_cols=194 Identities=21% Similarity=0.160 Sum_probs=141.5
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHH--HhCCCcEEEE
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQA--IADGVDIMSL 290 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a--~~~g~dVIn~ 290 (755)
..|+++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~------~~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI------KSNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC------CCCCccHHHHHHHHHhcCCceEEEe
Confidence 457899999999999987 4677999998766522 1233456677777 5679999999
Q ss_pred ccCCCCCCC------CCCHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CccccCCCceEEeccccccceeeEEEEeC
Q 037455 291 SLAFPETTF------DENPIAIGAFAALKR-GIFVACSAGNSGPRP-----YSIRNGAPWITAVGAGTVDREFAAHVTLG 358 (755)
Q Consensus 291 SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~ 358 (755)
|||...... ..+.+..+++.+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 999865321 234567777777666 999999999999753 233456788999998432110
Q ss_pred CceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEe
Q 037455 359 NEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438 (755)
Q Consensus 359 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~ 438 (755)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCC
Q 037455 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPG 518 (755)
Q Consensus 439 n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG 518 (755)
....+.||++|-.....+..||||+|||
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG 191 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPG 191 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCCCCCceeEEEEee
Confidence 0022456665422222378999999999
Q ss_pred CcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCH------HHHHHHHHcc
Q 037455 519 VDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSS------AAIRSALMTT 582 (755)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~------~~ik~~L~~T 582 (755)
++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+.|
T Consensus 192 ~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 192 SNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99998 322 7889999999999999999999999887764 4567777665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-31 Score=270.74 Aligned_cols=196 Identities=36% Similarity=0.494 Sum_probs=158.1
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH-hCCCcEEEEc
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI-ADGVDIMSLS 291 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~-~~g~dVIn~S 291 (755)
..+..+||||||++|++...+.. ..|+||+++|+.+|+....+. .....+++++++++ ..+++|||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~--~~~~~~~~ai~~~~~~~~~~iin~S 108 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGS--GSSSDIAAAIDYAAADQGADVINLS 108 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCC--cCHHHHHHHHHHHHhccCCCEEEeC
Confidence 45678999999999999853321 279999999999999887654 57788999999999 8999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEEeee
Q 037455 292 LAFPETTFDENPIAIGAFAALKR-GIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367 (755)
Q Consensus 292 lG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~ 367 (755)
||..... ....+...+..+.++ |+++|+|+||.+.... ..+...+++|+||+.+...
T Consensus 109 ~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------ 169 (241)
T cd00306 109 LGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------ 169 (241)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC------------------
Confidence 9986533 345677777788887 9999999999998776 4677889999999843211
Q ss_pred eccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC
Q 037455 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~ 447 (755)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccc-cccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 448 EVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVA-NFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 448 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
... .++++| .|||+.|||.++.+...
T Consensus 170 ---------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~ 196 (241)
T cd00306 170 ---------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPT 196 (241)
T ss_pred ---------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCccc
Confidence 111 344444 46699999999987511
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.. ...+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 197 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 197 TG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11 1389999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=240.54 Aligned_cols=272 Identities=30% Similarity=0.416 Sum_probs=196.4
Q ss_pred CCCCcC--CCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCC
Q 037455 128 AGVWPA--AGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIS 205 (755)
Q Consensus 128 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~ 205 (755)
...|.. +.+|+||+|+|||+||+..||+|.+.... .++|....
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457776 89999999999999999999999864110 01222221
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecC-CCCCCChhHHHHHHHHHHhCC
Q 037455 206 TTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSN-DNLAAAETDVLAGMDQAIADG 284 (755)
Q Consensus 206 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~~~~~i~~ai~~a~~~g 284 (755)
......|..+|||||+|++++....+ .....|+||+++++.+|++... +. ....+++.+|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~--~~~~~~~~~i~~~~~~~ 242 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGS--GELSDVAEGIEGAANLG 242 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCc--ccHHHHHHHHHHHHhcC
Confidence 00024678999999999999842111 1124899999999999999866 54 77888899999999999
Q ss_pred --CcEEEEccCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCCCC----ccccCC--CceEEeccccccceeeEEE
Q 037455 285 --VDIMSLSLAFPETTFDENPIAIGAFAALKRG-IFVACSAGNSGPRPY----SIRNGA--PWITAVGAGTVDREFAAHV 355 (755)
Q Consensus 285 --~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~ 355 (755)
+++||||+|..........+..++..++..| +++|+++||.+.... ..+... +.+++|++..
T Consensus 243 ~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------- 313 (508)
T COG1404 243 GPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------- 313 (508)
T ss_pred CCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------
Confidence 9999999998522233445666676777777 999999999987652 122222 2555555421
Q ss_pred EeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 037455 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435 (755)
Q Consensus 356 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~ 435 (755)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeE
Q 037455 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515 (755)
Q Consensus 436 i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~ 515 (755)
..+.++.||++|+.. ..+++
T Consensus 314 ------------------------------------------------------~~~~~~~~s~~g~~~------~~~~~ 333 (508)
T COG1404 314 ------------------------------------------------------LSDTVASFSNDGSPT------GVDIA 333 (508)
T ss_pred ------------------------------------------------------CCCccccccccCCCC------Cccee
Confidence 123667899999752 22999
Q ss_pred eCCCcEEe-----eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHccccccccC
Q 037455 516 APGVDILA-----AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR-DWSSAAIRSALMTTADVLDNA 589 (755)
Q Consensus 516 APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~ik~~L~~TA~~~~~~ 589 (755)
|||.+|.+ +++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .
T Consensus 334 apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~-- 399 (508)
T COG1404 334 APGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T-- 399 (508)
T ss_pred CCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c--
Confidence 99999988 444431 1499999999999999999999999999 89999999998888873 0
Q ss_pred CcccccCCCCCCCCCCcccccccCcCccC
Q 037455 590 YGMITDKSTGVAGTPLDFGAGHINPNKAM 618 (755)
Q Consensus 590 g~~~~~~~~~~~~~~~~~G~G~in~~~Av 618 (755)
........++.|..+...+.
T Consensus 400 ---------~~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 400 ---------PLSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred ---------cCCccccccccCcccccccc
Confidence 01122346667766655544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-23 Score=206.18 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=103.5
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|.+|++|++|.+||.|.||||-|||+..+ | .--..++|..+ +
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssn---------d 195 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSN---------D 195 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccC---------C
Confidence 345899999999999999999999999999632 1 12233444332 2
Q ss_pred CCCCCCCCC--CCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-C
Q 037455 207 TDDYDSPRD--FFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-D 283 (755)
Q Consensus 207 ~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~ 283 (755)
+.+++...| .+.|||.|||-+++...+ +++| .|||.+.++..+|+++. .+..|++.|-..--+ .
T Consensus 196 pfpyprytddwfnshgtrcagev~aardn--gicg------vgvaydskvagirmldq-----pymtdlieansmghep~ 262 (629)
T KOG3526|consen 196 PFPYPRYTDDWFNSHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ-----PYMTDLIEANSMGHEPS 262 (629)
T ss_pred CCCCCcccchhhhccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC-----chhhhhhhhcccCCCCc
Confidence 333333334 579999999988776544 3444 59999999999999875 456666655322211 3
Q ss_pred CCcEEEEccCCCCC-CCCCCH---HHHHHHHHHh-----CCcEEEEecCCCCCC
Q 037455 284 GVDIMSLSLAFPET-TFDENP---IAIGAFAALK-----RGIFVACSAGNSGPR 328 (755)
Q Consensus 284 g~dVIn~SlG~~~~-~~~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~g~~ 328 (755)
.++|.+-|||.... ...+-| ..+++-+-+. .|-++|.|.|..|.+
T Consensus 263 kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 263 KIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred eEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 56899999998762 222222 2333333332 367999999998854
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=177.71 Aligned_cols=99 Identities=27% Similarity=0.319 Sum_probs=79.0
Q ss_pred eeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC---CCcEEEEccCCCCCCC---CCCHHHHHHHHHHhCCcEE
Q 037455 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD---GVDIMSLSLAFPETTF---DENPIAIGAFAALKRGIFV 318 (755)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~v 318 (755)
+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||||||...... +.+.+..++.++..+||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHhccCCCeEEEEEECCcC------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 5899999999999997542 34567788888877 9999999999875322 2245777778888999999
Q ss_pred EEecCCCCCCCC-----------ccccCCCceEEeccccccc
Q 037455 319 ACSAGNSGPRPY-----------SIRNGAPWITAVGAGTVDR 349 (755)
Q Consensus 319 V~AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 349 (755)
|+|+||+|.... ..++.+|++++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 3567899999999976543
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=112.55 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=90.2
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcCCC--CCcc
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHLSP--EVFN 451 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~~~--~~~~ 451 (755)
...+.+++|.+. |...++...+++|||+||.|+.|.+. +|..+++++||.++|++|+ .+..... ....
T Consensus 24 ~~~~~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~c~~~---~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 24 LGKTYELVDAGL------GTPEDFEGKDVKGKIALIQRGEITFV---EKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CCcEEEEEEccC------CchhccCCCCccceEEEEECCCCCHH---HHHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 456788998654 33344556789999999999999777 9999999999999999998 3322111 1357
Q ss_pred ccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCC
Q 037455 452 MPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPS 503 (755)
Q Consensus 452 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 503 (755)
+|+++|+..+|+.|++++++ .+++.+..+.. ....+.++.||||||+
T Consensus 95 iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 95 IPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 89999999999999999987 56666666555 4566789999999997
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-10 Score=103.00 Aligned_cols=118 Identities=31% Similarity=0.578 Sum_probs=92.8
Q ss_pred EEeCCceEEEeeeeccCCCCCCceeeEEeccC---CCCCcccCCCCCCCccccceEEEEeecCC-CchhHHHHHHHHHHc
Q 037455 355 VTLGNEELTVIGKSVYPENLFVSREPIYFGYG---NRSKEICEPNSTDSKAVAGKYIFCAFDYN-GNVTVYQQLEEVRKS 430 (755)
Q Consensus 355 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~~~~ 430 (755)
++++|++. +.|+++++..+ ..+++++... ......|........+++||||||.++.| .+. +|..+++++
T Consensus 2 i~LGng~~-i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~---~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKT-IVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRV---AKGDAVKAA 75 (126)
T ss_pred EEeCCCCE-EEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHH---HHHHHHHHc
Confidence 57888877 99999997333 4667765322 23457899888888899999999999998 666 999999999
Q ss_pred CceEEEEecC-CCCc-CCCCCccccEEEEeccchHHHHHHHHhcCCcEEE
Q 037455 431 GAAGAIFSAD-SRQH-LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 431 ga~g~i~~n~-~g~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
||.|+|++++ .+.. .......+|.+.|...+|+.|++|++++..++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999988 3322 2222467999999999999999999987765543
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-09 Score=90.16 Aligned_cols=81 Identities=35% Similarity=0.571 Sum_probs=57.5
Q ss_pred eEEEEECCCCCCCC-ccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEecee
Q 037455 32 TYIIHMDKAAMPAP-FSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESF 110 (755)
Q Consensus 32 ~yIV~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~~~ 110 (755)
+|||+|++...... ...+.+++.+++.+..... ...+.++.+.|...||||+++++++++++|+++|+|++|+|++.
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSA--SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH---TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhh--cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999999876544 5566667665444321000 01168999999999999999999999999999999999999998
Q ss_pred eccc
Q 037455 111 GHLH 114 (755)
Q Consensus 111 ~~~~ 114 (755)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8763
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=89.35 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=60.4
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEc--------CCC----------c-EEEEEeCeEEEecCCcEEEEEEEEEecCCccc
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKA--------PAG----------M-KVKVQPATLSFAGKYSKAEFSLTVNINLGSAV 715 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~ 715 (755)
...+++++|+|.|+.+.+|++++.. ..| . .+...+..|++ ++|++++|+|+|+.+.+-.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~- 85 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLD- 85 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGH-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCC-
Confidence 4689999999999999999999861 111 1 67778889999 7999999999999976310
Q ss_pred CCCCCCeeEEEEEEEEeeCCceEEEeEEE
Q 037455 716 SPKSNFLGNFGYLTWYDVNGKHLVRSPIV 744 (755)
Q Consensus 716 ~~~~~~~~~~G~~~~~~~~~~~~v~~P~~ 744 (755)
..+.. +++|+|.|+++++.+.+++||+
T Consensus 86 ~~~~~--~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGP--FYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-E--EEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCC--EEEEEEEEEcCCCCEEEEeeeC
Confidence 12345 9999999965566679999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-08 Score=89.64 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=71.0
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC------CCCcCCCCCc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD------SRQHLSPEVF 450 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~------~g~~~~~~~~ 450 (755)
...+++..+.......|.+......+++||||||.||.|.+. +|..+++++||.++|++|. ..........
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~---~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~ 82 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFD---DKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPI 82 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHH---HHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTST
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHH---HHHHHHHHcCCEEEEEEeCCccccCcccccCCCCc
Confidence 356666444444556677777888999999999999999888 9999999999999999992 2222334568
Q ss_pred cccEEEEeccchHHHHHHH
Q 037455 451 NMPFVAVNLKDGELVKKYI 469 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~ 469 (755)
.+|+++|+..+|+.|++|+
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999885
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-08 Score=87.96 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=74.9
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC----CC--CCc
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL----SP--EVF 450 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~----~~--~~~ 450 (755)
.-++++... ...+.|.+..+...+++|||+|+.|+.|.+. +|..+++++||.++|++|+ .+... .. ...
T Consensus 18 ~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~---~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGGCPFA---DKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 345666432 2347899888877899999999999999887 9999999999999999988 32211 11 345
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEE
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
.+|+++|+..+|+.|++++..+.+.++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999987765433
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=88.69 Aligned_cols=93 Identities=6% Similarity=0.018 Sum_probs=74.7
Q ss_pred eccCCCCCcccCCCCC--CCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-C-CCcCC----CCCccccE
Q 037455 383 FGYGNRSKEICEPNST--DSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-S-RQHLS----PEVFNMPF 454 (755)
Q Consensus 383 ~~~~~~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~-g~~~~----~~~~~~p~ 454 (755)
........+.|.+... ++.++.|+|+|++||.|.|. +|..+++++||.++|+||+ + +.... .....+|+
T Consensus 37 ~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~---~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~ 113 (138)
T cd02122 37 VPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFE---EKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVA 113 (138)
T ss_pred cCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceE
Confidence 3334445678988776 56789999999999999988 9999999999999999999 3 32222 12357899
Q ss_pred EEEeccchHHHHHHHHhcCCcEEE
Q 037455 455 VAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 455 ~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
++|+..+|+.|++++.++.+.+++
T Consensus 114 v~Is~~~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 114 IMITNPKGMEILELLERGISVTMV 137 (138)
T ss_pred EEEcHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999999888765554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-08 Score=85.92 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=72.2
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc-C---C--CCCc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH-L---S--PEVF 450 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~-~---~--~~~~ 450 (755)
..+|++.... ...|.+.++.+.+++|||+|++||+|.|. +|..+++++||.++|++|+.... . . ....
T Consensus 20 ~~~~~~~~~~---~~gC~~~~~~~~~l~gkIaLV~RG~CsF~---~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLTS---SVLCSASDVPPGGLKGKAVVVMRGNCTFY---EKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCCC---cCCCCccccCccccCCeEEEEECCCcCHH---HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 3566666443 46799888888899999999999999888 99999999999999999994321 1 1 1346
Q ss_pred cccEEEEeccchHHHHHHHHh
Q 037455 451 NMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~ 471 (755)
.||+++|++.+|+.|.+.+.+
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999988764
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=101.33 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=98.9
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+...|..+++|+++.|+|.|.|++..||+.... ....+.+++.... +.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------ND 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CC
Confidence 467999999999999999999999999999742 1122333332221 12
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCC
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGV 285 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~ 285 (755)
+.+-.+......|||-||+-.+....+. .. ..|+++++++..++++...- ++...+...... .-+
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C------~vg~~~~~~~~g~~~l~~~v------~~~~~~~~~~~~~~~~ 135 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNL--TC------GVGVAYNATIGGIRMLAGCV------SDAVEAPSLGFGPCHI 135 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCC--cC------CCCcccCccccceeeeeeec------ccceecccccCCCCCc
Confidence 2222223346889999999999875221 11 27999999999999986422 122222222222 356
Q ss_pred cEEEEccCCCCCC-CCC---CHHHHHHHH-----HHhCCcEEEEecCCCCCCCC
Q 037455 286 DIMSLSLAFPETT-FDE---NPIAIGAFA-----ALKRGIFVACSAGNSGPRPY 330 (755)
Q Consensus 286 dVIn~SlG~~~~~-~~~---~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 330 (755)
++-..|||..... ... .....+... ...+|-+.++|.||.|....
T Consensus 136 di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 136 DIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred eeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 8889999986521 111 122222222 22467899999999886543
|
|
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=85.43 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=69.9
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC---cCC-------CCCccccEEEEec
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ---HLS-------PEVFNMPFVAVNL 459 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~---~~~-------~~~~~~p~~~i~~ 459 (755)
.+.|.+.. ...+++|||+|++||.|.|. +|..+++++||.++|++|+... ... .....+|+++|++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~---~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFL---TKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 46798644 35689999999999999988 9999999999999999998321 111 1235799999999
Q ss_pred cchHHHHHHHHhcCCcEEEE
Q 037455 460 KDGELVKKYIINVGNATVSI 479 (755)
Q Consensus 460 ~~g~~l~~~~~~~~~~~~~i 479 (755)
.+|+.|++.+..+..+++.+
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999988776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-07 Score=81.40 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=72.7
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc-C-----CCCCc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH-L-----SPEVF 450 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~-~-----~~~~~ 450 (755)
..-++++.. ...|.+.++ +.+++|||+|++|+.|.+. +|..+++++||.++|++|+.+.. . .....
T Consensus 22 ~~g~lv~~~----~~gC~~~~~-~~~~~gkIvlv~rg~c~f~---~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~ 93 (122)
T cd02130 22 VTGPLVVVP----NLGCDAADY-PASVAGNIALIERGECPFG---DKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGP 93 (122)
T ss_pred cEEEEEEeC----CCCCCcccC-CcCCCCEEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCCcccccccCCCCCC
Confidence 345566642 346876555 3579999999999999887 99999999999999999884211 1 11246
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEEE
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
.+|+++|+..+|+.|++.++++.+.+++
T Consensus 94 ~Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 94 YVPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred EeeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 7999999999999999999888765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=82.70 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=68.1
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcCC-----CCCccccEEEEeccchH
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHLS-----PEVFNMPFVAVNLKDGE 463 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~~-----~~~~~~p~~~i~~~~g~ 463 (755)
.+.|.+.... .+++|||+||.|+.|.+. +|..+++++||.++|++|+ .+.... .....+|+++|+.++|.
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~---~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFT---VKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHH---HHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 4679887763 469999999999999877 9999999999999999988 332111 12357999999999999
Q ss_pred HHHHHHHhcCCcEE
Q 037455 464 LVKKYIINVGNATV 477 (755)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (755)
.|++|++.+...++
T Consensus 103 ~l~~~l~~g~~v~v 116 (118)
T cd04818 103 ALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999998765544
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=83.27 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=67.7
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCC-----cCC--------CCCccccEE
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQ-----HLS--------PEVFNMPFV 455 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~-----~~~--------~~~~~~p~~ 455 (755)
.+.|.+... +.+++|||+|++||.|.|. +|..+++++||.++|++|+ ++. ... .+...||++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~---~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFV---EKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHH---HHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467986554 5679999999999999988 9999999999999999987 332 111 124578999
Q ss_pred EEeccchHHHHHHHHhcCCcEE
Q 037455 456 AVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 456 ~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
+|+..+|+.|++++..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999988765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=80.13 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=70.9
Q ss_pred eeEEeccCC--CCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC--CCCCcccc
Q 037455 379 EPIYFGYGN--RSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL--SPEVFNMP 453 (755)
Q Consensus 379 ~~~~~~~~~--~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~--~~~~~~~p 453 (755)
+|++..... ...+.|.+...+..+++|||+|++||.|.+. +|..+++++||.++|+||+ ++... ..+...+|
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~---~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~ 104 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFA---TKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSII 104 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHH---HHHHHHHHcCCcEEEEEECCCCcccccCCCCccee
Confidence 565544332 3457898776666689999999999999888 9999999999999999988 33221 12233456
Q ss_pred EEEEeccchHHHHHHHHhcCCcEE
Q 037455 454 FVAVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 454 ~~~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
.+.+ +.+|+.|++.+..+...++
T Consensus 105 ~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 105 AAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred eEEe-HHHHHHHHHHHhcCCeEEE
Confidence 6666 9999999999987755433
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.3e-07 Score=83.88 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=70.4
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC--------CC
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP--------EV 449 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~--------~~ 449 (755)
..+++... ..+.|.+.. .+++|||+|++||.|.|. +|..+++++||.++|+||+....... ..
T Consensus 39 ~~~lv~~~---~~~gC~~~~---~~~~g~IvLV~RG~C~F~---~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~ 109 (139)
T cd02132 39 KTRAVLAN---PLDCCSPST---SKLSGSIALVERGECAFT---EKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLN 109 (139)
T ss_pred EEEEEECC---cccccCCCC---cccCCeEEEEECCCCCHH---HHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCC
Confidence 34555432 246798754 479999999999999988 99999999999999999883221110 13
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEE
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
..||+++|++.+|+.|++.+..+...++
T Consensus 110 ~~IP~v~Is~~~G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 110 ISIPVVMIPQSAGDALNKSLDQGKKVEV 137 (139)
T ss_pred CcEeEEEecHHHHHHHHHHHHcCCcEEE
Confidence 5899999999999999999988776543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.5e-07 Score=81.74 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=67.5
Q ss_pred CcccCCCCCC--Cc----cccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcCC------------CCCc
Q 037455 390 KEICEPNSTD--SK----AVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHLS------------PEVF 450 (755)
Q Consensus 390 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~~------------~~~~ 450 (755)
.+.|.+.... +. ...++|+|++||.|.|. +|..+++++||.++|++|+ ++.... .+..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~---~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i 98 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFT---LKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKI 98 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHH---HHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCc
Confidence 4578766542 22 37889999999999999 9999999999999999998 432211 1134
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEEE
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
.+|+++|+..+|+.|+..+..+...+++
T Consensus 99 ~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 99 TIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 6999999999999999999988765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.2e-07 Score=81.79 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=67.5
Q ss_pred cccCCCC--CCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC--cC-C-----CCCccccEEEEecc
Q 037455 391 EICEPNS--TDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ--HL-S-----PEVFNMPFVAVNLK 460 (755)
Q Consensus 391 ~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~--~~-~-----~~~~~~p~~~i~~~ 460 (755)
..|.++. +...+++|||+||.|+.|.+. +|..+++++||.|+|++++... .. . .....+|++.|+..
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~---~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFS---EKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHH---HHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 4488776 667889999999999999777 9999999999999999988321 11 1 13467999999999
Q ss_pred chHHHHHHHHhcCCcE
Q 037455 461 DGELVKKYIINVGNAT 476 (755)
Q Consensus 461 ~g~~l~~~~~~~~~~~ 476 (755)
+|+.|++++.++.+.+
T Consensus 108 ~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 108 DGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHhcCCceE
Confidence 9999999998765543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=81.12 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=58.4
Q ss_pred CCCccccceEEEEeecCCC-----chhHHHHHHHHHHcCceEEEEecCC---CCcC--CCC---CccccEEEEeccchHH
Q 037455 398 TDSKAVAGKYIFCAFDYNG-----NVTVYQQLEEVRKSGAAGAIFSADS---RQHL--SPE---VFNMPFVAVNLKDGEL 464 (755)
Q Consensus 398 ~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~~~~ga~g~i~~n~~---g~~~--~~~---~~~~p~~~i~~~~g~~ 464 (755)
+...+++|||+|++||.|. |. +|..+++++||.++|+||+. +... ..+ ...+|++.|++.+|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~---~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEI---DKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHH---HHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence 3456799999999999998 66 99999999999999999994 3211 111 4689999999999999
Q ss_pred HHHHHHh
Q 037455 465 VKKYIIN 471 (755)
Q Consensus 465 l~~~~~~ 471 (755)
|+..+..
T Consensus 127 L~~~l~~ 133 (139)
T cd04817 127 LLAALGQ 133 (139)
T ss_pred HHHHhcC
Confidence 9998754
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=79.54 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=63.2
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC---C----CCCccccEEEEeccc
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL---S----PEVFNMPFVAVNLKD 461 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~---~----~~~~~~p~~~i~~~~ 461 (755)
.+.|.+. +..+++|||+|+.||+|.|. +|..+++++||.++|++|+ ++... . .....+|+++|++.+
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~CsF~---~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~ 101 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCGFL---DKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS 101 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence 4679766 55789999999999999888 9999999999999999988 33211 1 123579999999999
Q ss_pred hHHHHHHHHh
Q 037455 462 GELVKKYIIN 471 (755)
Q Consensus 462 g~~l~~~~~~ 471 (755)
++.|+.++..
T Consensus 102 g~~L~~l~~~ 111 (117)
T cd04813 102 YHLLSSLLPK 111 (117)
T ss_pred HHHHHHhccc
Confidence 9999987654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=81.45 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=67.7
Q ss_pred CcccCCCCCCC---ccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC---C-----CCccccEEEEe
Q 037455 390 KEICEPNSTDS---KAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS---P-----EVFNMPFVAVN 458 (755)
Q Consensus 390 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~---~-----~~~~~p~~~i~ 458 (755)
.+.|.+....+ .++.|+|+|++||.|.|. +|..+++++||.++|++|+...... . ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~---~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFE---TKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHH---HHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 56798776644 789999999999999988 9999999999999999998322221 1 13589999999
Q ss_pred ccchHHHHHHHHhcCC
Q 037455 459 LKDGELVKKYIINVGN 474 (755)
Q Consensus 459 ~~~g~~l~~~~~~~~~ 474 (755)
..+|+.|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=94.41 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=58.7
Q ss_pred eeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCC-cEEEEccCCCCCCC-----CCCHHHHHHHHHHhCCcEE
Q 037455 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGV-DIMSLSLAFPETTF-----DENPIAIGAFAALKRGIFV 318 (755)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~~~~-----~~~~~~~a~~~a~~~Gi~v 318 (755)
.+-+||+|+|..|-. .. .....+..|+.+....=+ -+|-.||+...... .-+.+..-...|..+|+.+
T Consensus 288 s~A~AP~A~I~lvva--p~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi 361 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITI 361 (1174)
T ss_pred hhccCccCceEEEEc--CC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEE
Confidence 468999999998876 22 233333344433333211 34445776633211 1233444555677899999
Q ss_pred EEecCCCCCCCC--------ccccCCCceEEecc
Q 037455 319 ACSAGNSGPRPY--------SIRNGAPWITAVGA 344 (755)
Q Consensus 319 V~AAGN~g~~~~--------~~~~~~p~vitVga 344 (755)
++|+|-+|.... ..++.+|++++||-
T Consensus 362 ~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 362 FAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999986653 34568999999996
|
|
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-05 Score=71.93 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCC--CchhHHHHHHHHHHcCceEEEEecC-CCCcC----C-
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYN--GNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL----S- 446 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~----~- 446 (755)
...+.+++|.+..... ++...+++|||+|+.++.| .+. +|..++++.||.++|++|+ ++... .
T Consensus 21 ~~~~~~lV~~g~G~~~------d~~~~~v~GkIvlv~~g~~~~~~~---~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 21 GEAKGEPVDAGYGLPK------DFDGLDLEGKIAVVKRDDPDVDRK---EKYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CCeeEEEEEeCCCCHH------HcCCCCCCCeEEEEEcCCCchhHH---HHHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 3457888887654332 2335679999999999998 555 9999999999999999987 44321 0
Q ss_pred ---CCCccccEEEEeccchHHHHHHHHhcC
Q 037455 447 ---PEVFNMPFVAVNLKDGELVKKYIINVG 473 (755)
Q Consensus 447 ---~~~~~~p~~~i~~~~g~~l~~~~~~~~ 473 (755)
.....+|++.|+.++|+.|...++.+.
T Consensus 92 ~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 92 TEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00078 Score=62.68 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCccccceEEEEeecCC------CchhHHHH-------HHHHHHcCceEEEEecC-CCC--------cCC-CCCccccEE
Q 037455 399 DSKAVAGKYIFCAFDYN------GNVTVYQQ-------LEEVRKSGAAGAIFSAD-SRQ--------HLS-PEVFNMPFV 455 (755)
Q Consensus 399 ~~~~~~gkivl~~~g~~------~~~~~~~~-------~~~~~~~ga~g~i~~n~-~g~--------~~~-~~~~~~p~~ 455 (755)
...+++|||+++.++.| .+. .| ...++++||.++|++|. ++. ... .....+|++
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~---~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v 110 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYG---PTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAA 110 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcC---chhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEE
Confidence 45689999999999999 665 66 68999999999999985 221 111 123569999
Q ss_pred EEeccchHHHHHHHHhcCCcEE
Q 037455 456 AVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 456 ~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
.|+.+++..|...++.+....+
T Consensus 111 ~is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 111 AISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred EechhcHHHHHHHHhCCCCeEE
Confidence 9999999999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=61.26 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=54.6
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCch---------------hHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNV---------------TVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~---------------~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
....++|+.+.+.....|...++...|++|||||+.++.|... .+..|...++++||.|+|++++
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 4568999988876677899888888999999999999877211 2448999999999999999998
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0009 Score=64.87 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=64.4
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC---CCc--------
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS---RQH-------- 444 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~---g~~-------- 444 (755)
+.+-+++|.+.+...++ ........+++|||+|++++.|.+. +|..+|+++||+|+|+|++. +..
T Consensus 28 ~v~g~lVyvn~G~~~Df-~~L~~~gv~v~GkIvLvr~G~~~~~---~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 28 TVTGKLVYANYGRKKDF-EDLQSVGVSVNGSVVLVRAGKISFA---EKVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred ceEEEEEEcCCCCHHHH-HHHHhcCCCCCCeEEEEECCCCCHH---HHHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 44667888644322211 1111124689999999999999877 99999999999999999882 110
Q ss_pred ---------CC-------------C---CCccccEEEEeccchHHHHHHHHh
Q 037455 445 ---------LS-------------P---EVFNMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 445 ---------~~-------------~---~~~~~p~~~i~~~~g~~l~~~~~~ 471 (755)
+. . ....||+.-|+..++..|++.+.-
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 00 0 124688999999999999998753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0024 Score=59.06 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=54.9
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCc---------hhHHHHHHHHHHcCceEEEEecCC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGN---------VTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~---------~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
...-++||.+.+.....|...++...+++|||||+.++.|.. .++..|..++.+.||.++|++++.
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 456789998887777889888888889999999999988741 234489999999999999999983
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0055 Score=57.80 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=52.9
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCC---------------CchhHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYN---------------GNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~---------------~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
..+-++||.+.+.....|...++...+++|||||+.++.. .+.++..|..++++.||+++|++++
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 4567899988877778898888888899999999988741 1123448999999999999999998
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.044 Score=48.20 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=61.9
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEeeC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVN 734 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 734 (755)
...+.+++|+|.+..+..|++.......-.++++|..-.+ ++|++.+++|+|.+.. + .+ .+++.|.+ ..
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-----~-~g--~~~~~l~i--~~ 88 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-----P-LG--DYEGSLVI--TT 88 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-----C-Cc--eEEEEEEE--EE
Confidence 4667788999999999999997644234567778877677 7999999999999655 2 23 67899988 54
Q ss_pred CceEEEeEEEEEE
Q 037455 735 GKHLVRSPIVSAF 747 (755)
Q Consensus 735 ~~~~v~~P~~~~~ 747 (755)
....+.+|+-+..
T Consensus 89 e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 89 EGGSFEIPVKAEV 101 (102)
T ss_pred CCeEEEEEEEEEE
Confidence 4467888876653
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0084 Score=64.99 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=64.3
Q ss_pred CccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC--------CCcCCCCCccccEEEEeccchHHHHHHHHh
Q 037455 400 SKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS--------RQHLSPEVFNMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 400 ~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~--------g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 471 (755)
...+++|++++.||+|.|. +|...++++||.+.++.|+. +.........||+++|++++++.+.....+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft---~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFT---EKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CccccceeEEEecccceee---hhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 4568999999999999999 99999999999999999982 222334468999999999999999987776
Q ss_pred cCCcEEEEe
Q 037455 472 VGNATVSIK 480 (755)
Q Consensus 472 ~~~~~~~i~ 480 (755)
+.+.++.+.
T Consensus 168 ~~~V~~~lY 176 (541)
T KOG2442|consen 168 NDNVELALY 176 (541)
T ss_pred CCeEEEEEE
Confidence 666555543
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.08 Score=44.09 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=38.0
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTK-SAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
...+++++|+|.+..+ ...++++..|+|-++...|..+.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5788999999999765 45888888999999888888775337999999999999997
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.032 Score=51.99 Aligned_cols=61 Identities=8% Similarity=0.059 Sum_probs=46.7
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
++.+-++||..-+...++-.-.. ..+++|||+|++.|...+- .|+.+|++.||.|+|+|.+
T Consensus 13 G~Vtg~~VYvNyG~~eDf~~L~~--~V~v~GkIvi~RyG~~~RG---~Kv~~A~~~GA~GviIYsD 73 (153)
T cd02131 13 GTLQAEVVDVQYGSVEDLRRIRD--NMNVTNQIALLKLGQAPLL---YKLSLLEEAGFGGVLLYVD 73 (153)
T ss_pred CceEEEEEEecCCCHHHHHHHHh--CCCccceEEEEeccCcchH---HHHHHHHHCCCeEEEEecC
Confidence 34466777766554444332222 2679999999999998888 9999999999999999988
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.064 Score=53.97 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=44.6
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
..+-++||.+.....++- .......+++|||+|++++.+.+. +|..+|++.||+|+|+|++
T Consensus 44 ~v~g~lVyvnyG~~~D~~-~L~~~gvdv~GKIvLvr~G~~~~~---~Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 44 NVTAELVYANYGSPEDFE-YLEDLGIDVKGKIVIARYGGIFRG---LKVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred CceEEEEEcCCCcHHHHH-HHhhcCCCCCCeEEEEECCCccHH---HHHHHHHHcCCEEEEEEeC
Confidence 456788886543222111 001125689999999999988766 8999999999999999988
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.92 Score=41.02 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.8
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLG 712 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 712 (755)
-...+++.|+|....+.+|++++..++|+++......+++ ++|++.++.|.|..+..
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3567888999999999999999999889999655578899 79999999999999983
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.072 Score=49.09 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=70.1
Q ss_pred eeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-C-CCcC------C----
Q 037455 379 EPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-S-RQHL------S---- 446 (755)
Q Consensus 379 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~-g~~~------~---- 446 (755)
.++|.... ..+|.... +.-...|.+++++||.|+|. .|..+++++||.++|+.++ . .... +
T Consensus 66 ~~lV~adP---p~aC~elr-N~~f~~d~vaL~eRGeCSFl---~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 66 LELVLADP---PHACEELR-NEIFAPDSVALMERGECSFL---VKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred cceeecCC---hhHHHHHh-hcccCCCcEEEEecCCceee---ehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 44554332 34464322 23457789999999999999 9999999999999999877 2 1111 1
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeee
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQ 482 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 482 (755)
.+...+|++++-..+|..++.-++.-....+.|..+
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 235789999999999998888887776666666544
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=93.68 E-value=1 Score=41.02 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=55.5
Q ss_pred cceeeeecCCCCceEEEEEEEEecCCCCceEEEEEEc----CCC--------------------cEEEEEeCeEEEecCC
Q 037455 643 PSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKA----PAG--------------------MKVKVQPATLSFAGKY 698 (755)
Q Consensus 643 ~s~~~~~~~~~~~~~~~~~tv~N~~~~~~ty~~~~~~----~~g--------------------~~v~v~p~~~~~~~~g 698 (755)
..|.+.... ..+++++++|+|.++.+.+|.+++.. ..| --+++ |..+++ +++
T Consensus 17 ~YFdL~~~P--~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~ 92 (121)
T PF06030_consen 17 SYFDLKVKP--GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPN 92 (121)
T ss_pred CeEEEEeCC--CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCC
Confidence 345544443 26889999999999999999998741 111 01222 445888 799
Q ss_pred cEEEEEEEEEecCCcccCCCCCCeeEEEEEEE
Q 037455 699 SKAEFSLTVNINLGSAVSPKSNFLGNFGYLTW 730 (755)
Q Consensus 699 ~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 730 (755)
++++++++++.|. ..-.+ .+-|-|.|
T Consensus 93 ~sk~V~~~i~~P~----~~f~G--~ilGGi~~ 118 (121)
T PF06030_consen 93 ESKTVTFTIKMPK----KAFDG--IILGGIYF 118 (121)
T ss_pred CEEEEEEEEEcCC----CCcCC--EEEeeEEE
Confidence 9999999999998 44555 77888887
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.44 Score=50.82 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=60.2
Q ss_pred cccCCCCCC---CccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc-C-----CCCCccccEEEEeccc
Q 037455 391 EICEPNSTD---SKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH-L-----SPEVFNMPFVAVNLKD 461 (755)
Q Consensus 391 ~~c~~~~~~---~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~-~-----~~~~~~~p~~~i~~~~ 461 (755)
++|.+...- .......++++.||+|+|. +|+.+|+.+|..++|+||+.+.. . ......++.++++...
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe---~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFE---DKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchH---HHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 567654331 3456678999999999988 99999999999999999984332 2 1235678899999999
Q ss_pred hHHHHHHHHh
Q 037455 462 GELVKKYIIN 471 (755)
Q Consensus 462 g~~l~~~~~~ 471 (755)
|+.|.+|...
T Consensus 140 ge~l~~~~~~ 149 (348)
T KOG4628|consen 140 GELLSSYAGR 149 (348)
T ss_pred HHHHHHhhcc
Confidence 9999887543
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.44 Score=45.35 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=45.2
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCch----------------hHHHHHHHHHHcCceEEEEecC
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNV----------------TVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~----------------~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
...++|+.+-+-....-...++...|++||||++..+.-.+. ....|...+.+.||.|+|+++.
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 456788877654443334446667899999999997643211 1125899999999999999876
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=88.37 E-value=11 Score=33.97 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=41.3
Q ss_pred eEEEEEEEEecCCCCceEEEEEEc---CCC----cEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 656 SFTFKRVLTNVADTKSAYTAAVKA---PAG----MKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
..+.+++|+|.++.+..+.+.+.. ... -.+-++|..+.+ ++|++++++| +....
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK 75 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC
Confidence 346677999999988888888764 111 257799999999 7999999999 77433
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.63 E-value=15 Score=40.68 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=46.5
Q ss_pred ceEEEEEEEEecCCCCceEEEEEE-cCCCcEEEEEeC-----eEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVK-APAGMKVKVQPA-----TLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~ 711 (755)
.+..|++++.|.|..+.+|.++.. .|+|-+....-. ++.+ ++|++++|+|.|.++.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 577999999999999999999998 788766554432 4566 6999999999999987
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.23 E-value=8.3 Score=42.58 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=55.8
Q ss_pred ceEEEEEEEEecCCCCce-EEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEE
Q 037455 655 ASFTFKRVLTNVADTKSA-YTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTW 730 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 730 (755)
..++..+.|.|.|+.+.| -++++..|.|-.+.|+|.++---++|+.+++.+|+++|.+ ...+ -++=+|+-
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~----a~aG--dY~i~i~~ 467 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED----AGAG--DYRITITA 467 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC----CCCC--cEEEEEEE
Confidence 467888899999988755 6799999999999999998765589999999999999983 3333 45555554
|
|
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
Probab=81.46 E-value=6.1 Score=44.24 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=49.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
....+++.|.|.++.+.+|+++++..++.++...++.+++ ++|+..++.|.+..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 3567888999999999999999999899888776557899 7999999999999986
|
Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum. |
| >PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm | Back alignment and domain information |
|---|
Probab=81.25 E-value=8.7 Score=33.76 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=40.9
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
......++|+|.++....|++....|... .|.|..-.+ .+|++.+++|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEecc
Confidence 34677779999999999999998777754 567998778 7999999999999865
|
These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 755 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-122 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-90 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 7e-11 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 2e-09 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 5e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 5e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 6e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 6e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 7e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 7e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 7e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 8e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 1e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-06 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 2e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 2e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 5e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 6e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 4e-05 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 4e-05 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 6e-05 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 6e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 1e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 2e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 2e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 2e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 2e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 3e-04 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 7e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 7e-04 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 7e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 7e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 8e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 8e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 8e-04 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 8e-04 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 8e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 9e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 617 bits (1593), Expect = 0.0
Identities = 277/658 (42%), Positives = 365/658 (55%), Gaps = 45/658 (6%)
Query: 115 TTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEV 174
TT T FL L +G+WPA+G G D+IV +LD+GIWPES S+ D GMP +P+RW+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 175 GVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQD 234
G +FN S CNRKLIGA F+KGI N ++ +S RD GHGTH +S G+ +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVN--ITMNSARDTDGHGTHCASITAGNFAKG 118
Query: 235 VDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294
V HFGYA GTA GVAP AR+A+YK F+ +D++A MDQA+ADGVD++S+S +
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEG---TFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 295 PETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAH 354
E+ I+I +F A+ +G+ V+ SAGN GP S+ NG+PWI V +G DR FA
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235
Query: 355 VTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDY 414
+TLGN + G S++P FV P+ + S E + + + C +
Sbjct: 236 LTLGNGL-KIRGWSLFPARAFVRDSPVIYN-KTLSDCSSEELLSQVENPENTIVICDDNG 293
Query: 415 NGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGN 474
+ + Q+ + ++ AIF ++ F P V VN K+G+ V Y+ N
Sbjct: 294 DFSD----QMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT 349
Query: 475 ATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPI 534
T +I FQ T L TKPAP VA S+RGPS I KPDILAPGV ILAA+ PN I
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 535 -RDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMI 593
+ L TDY L SGTSM+ PHAA IAA++KA H +WS +AIRSA+MTTAD LDN I
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 594 TDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDF---------------------- 631
D A TPLD GAGH++PN+A+DPGLV D+
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 632 --TCQYANLDLNYPSFIIILN---NTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVK 686
C + DLNYPSFI + + N FKR +TNV + Y A +KAP +
Sbjct: 530 SHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTIS 589
Query: 687 VQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPIV 744
V P L F K K ++LT+ S N G +TW + NG H VRSPIV
Sbjct: 590 VSPQILVFKNKNEKQSYTLTIRYIGDEGQSR------NVGSITWVEQNGNHSVRSPIV 641
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 565 bits (1456), Expect = 0.0
Identities = 234/662 (35%), Positives = 332/662 (50%), Gaps = 78/662 (11%)
Query: 115 TTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEV 174
TTR+ FLG V + S+I+VG+LDTGIWPES S+DD G P P +W+G CE
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 175 GVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQD 234
F CNRK+IGARS+ G + D + PRD GHGTHT+ST G V
Sbjct: 59 SNNF---RCNRKIIGARSYHIG------RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 235 VDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294
+ +G GTA G P+ARIA YKV +++ ++TD+LA D AIADGVDI+SLS+
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDG---CSDTDILAAYDDAIADGVDIISLSVGG 166
Query: 295 P-ETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAA 353
+ + IAIG+F A++RGI + SAGN GP ++ + +PW+ +V A T+DR+F
Sbjct: 167 ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 354 HVTLGNEELTVIGKSVYPEN-----LFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYI 408
V +GN + + G S+ + L R+ G+ + C S + + GK +
Sbjct: 227 QVQIGNGQ-SFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 409 FCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKY 468
C + + GAAG + ++++R + + +P ++ D +Y
Sbjct: 286 VCEASFGPHEFF------KSLDGAAGVLMTSNTRDYADS--YPLPSSVLDPNDLLATLRY 337
Query: 469 IINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPN 528
I ++ + +I TI AP V +FSSRGP+ + ++KPDI PGV+ILAAW
Sbjct: 338 IYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSV 396
Query: 529 NPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDN 588
P + T + ++SGTSMSCPH IA VK + WS AAI+SALMTTA ++
Sbjct: 397 AP---VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNA 453
Query: 589 AYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDF----------------- 631
+G+GH+NP KA+ PGLV SD+
Sbjct: 454 ---------RFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRI 504
Query: 632 ---------TCQYANLDLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAG 682
DLNYPSF + ++ + T + F R LT+VA S Y A + AP G
Sbjct: 505 TGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQG 564
Query: 683 MKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSP 742
+ + V P LSF G + F+LTV ++ V L W D G H VRSP
Sbjct: 565 LTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVV--------SASLVWSD--GVHYVRSP 614
Query: 743 IV 744
I
Sbjct: 615 IT 616
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 443 bits (1141), Expect = e-143
Identities = 112/636 (17%), Positives = 209/636 (32%), Gaps = 76/636 (11%)
Query: 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFN----TSHCN 184
+ AG G+ +V ++D G +++ + + E + + N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 185 RKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGT 244
K+ +S HGTH S + G+
Sbjct: 68 DKVAYYHDYS--------------KDGKTAVDQEHGTHVSGILSGN----APSETKEPYR 109
Query: 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFD--EN 302
G P A++ + +V + LA + + AI G ++++S + +
Sbjct: 110 LEGAMPEAQLLLMRV-EIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPD 168
Query: 303 PIAIGAFAALKRGIFVACSAGNSGPRPYSIR---------------NGAPWITAVGAGTV 347
A +G+ + SAGN R A V + +
Sbjct: 169 ETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 228
Query: 348 DREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKY 407
D++ V + + V N F + + Y N D K V GK
Sbjct: 229 DKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYAN-----RGTKEDDFKDVKGKI 283
Query: 408 IFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS---PEVFNMPFVAVNLKDGEL 464
G++ ++ + +K+GA G + + + P V MP ++ KDG L
Sbjct: 284 ALI---ERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 340
Query: 465 VKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524
+K T++ +L T +++ FSS G + + +KPDI APG DIL++
Sbjct: 341 LKDNP----QKTITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSS 394
Query: 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTA- 583
N Y LSGTSMS P A I L++ + S + A
Sbjct: 395 VANNK-------------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAK 441
Query: 584 DVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYP 643
VL ++ + D+ +P GAG ++ KA + V + + + N +
Sbjct: 442 KVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKF 501
Query: 644 SFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEF 703
+ ++N + T + + ++ S +
Sbjct: 502 EVTVNVHNKSDKPQELY--YQATVQTDKVDGKHFALAPKVLYETSWQKITIPAN-SSKQV 558
Query: 704 SLTVNINLGSAVSPKSNFLGNF--GYLTWYDVNGKH 737
++ ++ + S G F G++ + K
Sbjct: 559 TVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKE 594
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-28
Identities = 89/453 (19%), Positives = 154/453 (33%), Gaps = 85/453 (18%)
Query: 201 GLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPM--ARIAMYK 258
G N S T ++ P + HGTH + TI ++ G GV P A I + K
Sbjct: 47 GTNNSGTGNWYQPGNNNAHGTHVAGTIAAIA----NNEGVV-----GVMPNQNANIHIVK 97
Query: 259 VLFSNDNLAAAETDVLAGMDQAI-ADGVDIMSLSLAFPE-TTFDENPIAIGAFAALKRGI 316
V N+ + ++A +D + + G +++++SL TT + N + G+
Sbjct: 98 VF--NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGV 151
Query: 317 FVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNE-ELTVIGKSVYPENLF 375
+ +AGN+G YS + +V A + + AA ++ E++ G+++
Sbjct: 152 LLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTV 211
Query: 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435
G +S ++ + Y + + G
Sbjct: 212 GEGRLADITIGGQS------YFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGT 265
Query: 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVK-------KYIINVGNATVSIKFQ------ 482
FS + + V + + + K K II N+ +
Sbjct: 266 SFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA 325
Query: 483 -----ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537
+ + A +A + G S + G
Sbjct: 326 NSDITVPSVSVDRATGLALKAKLGQST--------TVSNQGNQ----------------- 360
Query: 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKS 597
DY +GTSM+ PH + +A LV + H + S++ +R+AL TAD L
Sbjct: 361 ----DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDL----------- 405
Query: 598 TGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSD 630
VAG G G IN A TG +D
Sbjct: 406 -SVAGRDNQTGYGMINAVAAKAYLDESCTGPTD 437
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+ +FSSRGP+ + LKP+++APG I+AA +DY YT GT+M+
Sbjct: 308 VITDFSSRGPTADN--RLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMA 361
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612
PH A IAAL+ H W+ +++AL+ TAD++ + +GAG +
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIV-----------KPDEIADIAYGAGRV 410
Query: 613 NPNKAMD----PGLVVLTGTSDFTCQYANLDLNYPSFIIILNNTNTASFTFKRVLTNVAD 668
N KA L S+ Q ++ F+ + + L +
Sbjct: 411 NAYKAAYYDNYAKLTFTGYVSNKGSQSHQFTISGAGFVTATLYWDNSGSDLDLYLYDPNG 470
Query: 669 TKSAYTAAV 677
+ Y+
Sbjct: 471 NQVDYSYTA 479
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 60/302 (19%), Positives = 109/302 (36%), Gaps = 73/302 (24%)
Query: 72 THLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHAT---------YLESFGHLHTTRTPQFL 122
Y Y+ + + + L + + +++ + + L
Sbjct: 61 KIKYNYHII-PALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGL 119
Query: 123 --GLKKHA--GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEF 178
+ +W GS I +GI+DTGI
Sbjct: 120 DESAAQVMATNMWNLGYDGSGITIGIIDTGI----------------------------- 150
Query: 179 NTSH--CNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVD 236
+ SH K+IG F + +P D GHGTH +S G+
Sbjct: 151 DASHPDLQGKVIGWVDF-------------VNGKTTPYDDNGHGTHVASIAAGTG----- 192
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD----GVDIMSLSL 292
+ G G+AP A++ KVL N + + +D++ G+D A+ + G+ +++LSL
Sbjct: 193 --AASNGKYKGMAPGAKLVGIKVL--NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSL 248
Query: 293 AFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRN--GAPWITAVGAGTVDRE 350
+++ + ++ A G+ V +AGNSGP Y++ + A + VGA
Sbjct: 249 GSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDV 308
Query: 351 FA 352
Sbjct: 309 IT 310
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 3e-23
Identities = 47/254 (18%), Positives = 77/254 (30%), Gaps = 43/254 (16%)
Query: 469 IINVGNATVSIKFQITILG--TKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526
+I VG A VS + K V ++SR P + APG I +
Sbjct: 393 LIGVG-AYVSPQMMEAEYAMREKLPGNVYTWTSRDP--CIDGGQGVTVCAPGGAIASVP- 448
Query: 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALV----KATHRDWSSAAIRSALMTT 582
+ ++ L++GTSM+ PH A AL+ K + ++S +I+ A+ T
Sbjct: 449 ----------QFTMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVT 498
Query: 583 ADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNY 642
A L P G G +N KA + + + N
Sbjct: 499 ATKLGYV-------------DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNA 545
Query: 643 PSFIIILNNTNTASF--------TFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSF 694
I + S F K + + A A L
Sbjct: 546 DKGIHLRQGVQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDL 605
Query: 695 AGKYSKAEFSLTVN 708
+ ++ V+
Sbjct: 606 SY--GTRSIAVRVD 617
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 3e-18
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 19/149 (12%)
Query: 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLA 267
+ + HGTH SS G+ ++ GVAP A+I +
Sbjct: 261 NVLEVVGMSSPHGTHVSSIASGN---------HSSRDVDGVAPNAKIVSMTIGDGRLGSM 311
Query: 268 AAETDVLAGMDQAI-----ADGVDIMSLSLAFPETTFDENPIAIGA-FAALKRGIFVACS 321
T ++ M + + +D++++S + I K G+ S
Sbjct: 312 ETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVAS 371
Query: 322 AGNSGPRPYSI----RNGAPWITAVGAGT 346
AGN GP ++ P + VGA
Sbjct: 372 AGNHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 3e-23
Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 27/224 (12%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD-----YTLLS 547
+VA FSSR + + APGV IL+ + + + Y
Sbjct: 327 RVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 548 GTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDF 607
GTSM+ PH + A++ + IR L TA G D
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF------------NGNGWDHDT 426
Query: 608 GAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNY--PSFIIILNNTNTASFTFKRVLTN 665
G G + + A+ L G +F + N+ P+ + + N + + K
Sbjct: 427 GYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDG 486
Query: 666 VADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNI 709
+A + G A + G+ +++ + +
Sbjct: 487 IARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRM 530
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 2e-12
Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 59/199 (29%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSH--CNRKLIGARSFS 194
G++IIV ++DTG+ + +H ++I +
Sbjct: 153 GTNIIVAVVDTGV-----------------------------DGTHPDLEGQVIAGYRPA 183
Query: 195 KGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARI 254
GTH + TI + D G GVAP A+I
Sbjct: 184 FDEELPA--------GTDSSYGGSAGTHVAGTIAAKK----DGKGIV-----GVAPGAKI 226
Query: 255 AMYKVLFSNDNLAA----AETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENPIAIGA 308
+ + + V AG+ A G +M+ S T E A
Sbjct: 227 MPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE---AFD- 282
Query: 309 FAALKRGIFVACSAGNSGP 327
A++ G+ + SAGN+
Sbjct: 283 -YAMEHGVVMVVSAGNNTS 300
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 36/127 (28%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
Q A+FSS GP + D++APGV I + P N Y +GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTL-PGN------------KYGAYNGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612
PH A AAL+ + H +W++ +RS+L T L G +G G I
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYYGKGLI 268
Query: 613 NPNKAMD 619
N A
Sbjct: 269 NVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 6e-21
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 63/229 (27%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
+ GS++ V ++D+GI ++SH + K+ G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGI-----------------------------DSSHPDLKVAG 46
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
S + + +D HGTH + T+ + G GVA
Sbjct: 47 GASM------------VPSETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVA 85
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL--AFPETTFDENPIAIG 307
P A + KVL + + + ++ G++ AIA+ +D++++SL A+
Sbjct: 86 PSASLYAVKVL--GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA---AVD 140
Query: 308 AFAALKRGIFVACSAGNSGPRPYSIRNG----APWITAVGAGTVDREFA 352
A+ G+ V +AGN G S G P + AVGA + A
Sbjct: 141 --KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRA 187
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-22
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 36/125 (28%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
A+FSS G + +++APG + + + P N Y L+GTSM+
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTY-PTN------------TYATLNGTSMA 222
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612
PH A AAL+ + H + S++ +R+ L +TA L G+ +G G I
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLI 267
Query: 613 NPNKA 617
N A
Sbjct: 268 NVEAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 9e-21
Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 64/229 (27%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
V G+++ V +LDTGI SH + ++G
Sbjct: 16 VQAQGFKGANVKVAVLDTGI-----------------------------QASHPDLNVVG 46
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
SF D GHGTH + T+ G GVA
Sbjct: 47 GASF-------------VAGEAYNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVA 84
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL--AFPETTFDENPIAIG 307
P + KVL N + + + + +++G++ A +G+D++++SL A T + A+
Sbjct: 85 PSVSLYAVKVL--NSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ---AVD 139
Query: 308 AFAALKRGIFVACSAGNSGPRPYSIRNG----APWITAVGAGTVDREFA 352
A RG+ V +AGNSG + G + AVGA + A
Sbjct: 140 --NAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRA 186
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 5e-22
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 22/135 (16%)
Query: 483 ITILGTKPAPQVANFSSRGPSLR----SPWILKPDILAPGVDILAAWVPNNPWQPIRDDY 538
+ + +VA++SSRG +I APG + + W N
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-YNG--------- 241
Query: 539 LLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKST 598
Y +SGTSM+ PH + +AA + A + S+ +RS L A +D I
Sbjct: 242 ---GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD-----IKGGYG 293
Query: 599 GVAGTPLDFGAGHIN 613
G G G
Sbjct: 294 AAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 54/230 (23%), Positives = 79/230 (34%), Gaps = 63/230 (27%)
Query: 126 KHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHC-- 183
+ + GS I + +LDTG+ NTSH
Sbjct: 14 YNNDTLTSTTGGSGINIAVLDTGV-----------------------------NTSHPDL 44
Query: 184 NRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKG 243
+ + F+ TT +S D GHGTH + T D G
Sbjct: 45 VNNVEQCKDFTGA---------TTPINNSCTDRNGHGTHVAGTALADGGS--DQAGIY-- 91
Query: 244 TAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGV-----DIMSLSL--AFPE 296
GVAP A + YKVL D+ + D+ A + A I+S+SL +
Sbjct: 92 ---GVAPDADLWAYKVL--LDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANN 146
Query: 297 TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRN--GAPWITAVGA 344
+ A+ A +G+ + +AGNSG +I P AV A
Sbjct: 147 SLISS---AVN--YAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 36/125 (28%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
A+FS G L DI+APGV++ + + P + Y L+GTSM+
Sbjct: 179 NRASFSQYGAGL--------DIVAPGVNVQSTY-PGS------------TYASLNGTSMA 217
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612
PH A AALVK + WS+ IR+ L TA L G+ +G+G +
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL---------------GSTNLYGSGLV 262
Query: 613 NPNKA 617
N A
Sbjct: 263 NAEAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 61/225 (27%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
GS + V +LDTGI ++H + + G
Sbjct: 16 AHNRGLTGSGVKVAVLDTGI------------------------------STHPDLNIRG 45
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
SF S +D GHGTH + TI + G GVA
Sbjct: 46 GASF-------------VPGEPSTQDGNGHGTHVAGTIAAL--------NNSIGVL-GVA 83
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENPIAIG 307
P A + KVL + + + + + G++ A +G+ + +LSL P T ++ A+
Sbjct: 84 PSAELYAVKVL--GASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVN 138
Query: 308 AFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
+A RG+ V ++GNSG S AVGA + A
Sbjct: 139 --SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRA 181
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 5e-20
Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 21/233 (9%)
Query: 467 KYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526
K I VG VA FSSRGP+ +KPD++APG IL+A
Sbjct: 177 KNAITVGATENLR--PSFGSYADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILSAR- 231
Query: 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586
+ + Y + GTSM+ P A A ++ + +L+ A
Sbjct: 232 SSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAAL-- 289
Query: 587 DNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYA---NLDLNYP 643
+ G+ + G G + +K+++ V + + + + P
Sbjct: 290 -----IAGAADIGLGYPNGNQGWGRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKP 344
Query: 644 SFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAG 696
I ++ + AS T L N D + AP G + T +
Sbjct: 345 LKISLVWSDAPASTTASVTLVNDLD------LVITAPNGTQYVGNDFTSPYND 391
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 2e-18
Identities = 43/237 (18%), Positives = 70/237 (29%), Gaps = 49/237 (20%)
Query: 130 VWPAAGF-GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLI 188
+ G G IV + DTG+ R + E +RG K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDT------GRNDSSMHEAFRG---------------KIT 51
Query: 189 GARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGV 248
+ ++ D GHGTH + ++ G+ T G+
Sbjct: 52 ALYAL--------------GRTNNANDTNGHGTHVAGSVLGNG-----------STNKGM 86
Query: 249 APMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGA 308
AP A + ++ S L +++ QA + G I + S
Sbjct: 87 APQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVD 146
Query: 309 FAALKRGIFVACSAGNSGPRPYSIRN--GAPWITAVGAGTVDREFAAHVTLGNEELT 363
K + + +AGN GP +I A VGA R +
Sbjct: 147 DYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVA 203
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 7e-20
Identities = 58/336 (17%), Positives = 98/336 (29%), Gaps = 83/336 (24%)
Query: 33 YIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQ 92
Y++ + + + L + G L+ ++ ++ GF +S +
Sbjct: 78 YVVVLKEETHLSQSERTARR-------LQAQAARRGYLTKILHVFHGLLPGFLVKMSGDL 130
Query: 93 LEQLQKMPGHHATYLESFGHLHTTRTPQFLG----LKKHAGVWPAAGFGSDIIVGILDTG 148
LE K+P H Y+E + P L + A + GS + V +LDT
Sbjct: 131 LELALKLP--HVDYIEEDSSVFAQSIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTS 188
Query: 149 IWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTD 208
I + H I R +N T
Sbjct: 189 I-----------------------------QSDHRE---IEGRV-MVTDFENVPEEDGTR 215
Query: 209 DYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAA 268
+ HGTH + + G GVA A + +VL N
Sbjct: 216 FHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVL--NCQGKG 259
Query: 269 AETDVLAGMDQAIADGVD------IMSLSLAFPE-TTFDENPIAIGAFAALKRGIFVACS 321
+ L G++ + ++ L LA + A + G+ + +
Sbjct: 260 TVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA---ACQ--RLARAGVVLVTA 314
Query: 322 AGNSGPR-----PYSIRNGAPWITAVGAGTVDREFA 352
AGN P S AP + VGA +
Sbjct: 315 AGNFRDDACLYSPAS----APEVITVGATNAQDQPV 346
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 5e-13
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSS 572
D+ APG DI+ A + T + SGTS + H A IAA++ + + +
Sbjct: 360 DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 573 AAIRSALMTTA--DVLDNAYGMITDKSTGVAGTP 604
A +R L+ + DV++ A TP
Sbjct: 409 AELRQRLIHFSAKDVINEA----WFPEDQRVLTP 438
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 31/131 (23%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+FS+ G + K ILAPG +IL A P + L+GTSM+
Sbjct: 252 TPCHFSNWGGN-----NTKEGILAPGEEILGAQ-PCT-----------EEPVRLTGTSMA 294
Query: 553 CPHAAAIAALVKATH----RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFG 608
P I+AL+ + + + A+R+AL+ TA D V P
Sbjct: 295 APVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDP----------EVVEEPERCL 344
Query: 609 AGHINPNKAMD 619
G +N AM
Sbjct: 345 RGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 5e-17
Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 17/220 (7%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
I + I+D ++ + V W E + + + KG
Sbjct: 48 DPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAE-PITPEDYAAFQSIRD--QGLKG 104
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
+ + D H H +STI G H G+AP R+
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQE-----HSPVF-----GIAPNCRVIN 154
Query: 257 YKVL---FSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF-AAL 312
N + + ++ +D A+ G +I+ + P T + I + A
Sbjct: 155 MPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQ 214
Query: 313 KRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
+ + GN+ + + P AVGA VD
Sbjct: 215 DNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPC 254
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 37/137 (27%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I + T ++FS+ G + D+ APG I + + P +
Sbjct: 179 IAVASTDQNDNKSSFSTYGSWV--------DVAAPGSSIYSTY-PTS------------T 217
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602
Y LSGTSM+ PH A +A L+ + + S++ IR+A+ TAD + G
Sbjct: 218 YASLSGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTADKIS--------------G 261
Query: 603 TPLDFGAGHINPNKAMD 619
T + G +N KA+
Sbjct: 262 TGTYWAKGRVNAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 46/228 (20%), Positives = 77/228 (33%), Gaps = 62/228 (27%)
Query: 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHC--NRK 186
W GS + I+DTG+ ++H K
Sbjct: 22 QAWDI-AEGSGAKIAIVDTGV-----------------------------QSNHPDLAGK 51
Query: 187 LIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAI 246
++G F D+ +P++ GHGTH + + G A
Sbjct: 52 VVGGWDF-------------VDNDSTPQNGNGHGTHCAGIAAAVT-------NNSTGIA- 90
Query: 247 GVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENPI 304
G AP A I +VL +++ + T V G+ A G ++SLSL + +
Sbjct: 91 GTAPKASILAVRVL--DNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ--- 145
Query: 305 AIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
A+ A +G V +AGN+G + AV + + +
Sbjct: 146 AVN--YAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKS 191
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 37/127 (29%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
++A+FS+ G + D++APGVDI++ N Y +SGTSM+
Sbjct: 190 RLASFSNYGTWV--------DVVAPGVDIVSTI-TGN------------RYAYMSGTSMA 228
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612
PH A +AAL+ + + ++ IR A+ TAD + GT F G I
Sbjct: 229 SPHVAGLAALLAS--QGRNNIEIRQAIEQTADKIS--------------GTGTYFKYGRI 272
Query: 613 NPNKAMD 619
N A+
Sbjct: 273 NSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 46/227 (20%), Positives = 74/227 (32%), Gaps = 61/227 (26%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHC--NRKL 187
W S + ++DTG+ + +H + K+
Sbjct: 23 AWDVTKGSSGQEIAVIDTGV-----------------------------DYTHPDLDGKV 53
Query: 188 IGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIG 247
I F D+ P D HGTH + + G A G
Sbjct: 54 IKGYDF-------------VDNDYDPMDLNNHGTHVAGIAAAET---NNATGIA-----G 92
Query: 248 VAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENPIA 305
+AP RI + L + N + +D+ + A G ++++LSL TT + A
Sbjct: 93 MAPNTRILAVRAL--DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN---A 147
Query: 306 IGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
+ A +G V +AGN+G + AVGA A
Sbjct: 148 VN--YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLA 192
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 33/127 (25%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
S G + DI APG +I P+ SGTS +
Sbjct: 235 GGITGSRFGNN-------WVDIAAPGQNITFLR-PDA------------KTGTGSGTSEA 274
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612
+ + A + + + ++ ++ L+ +AD + +
Sbjct: 275 TAIVSGVLAAMTSCNPRATATELKRTLLESADKYP-------------SLVDKVTEGRVL 321
Query: 613 NPNKAMD 619
N KA+
Sbjct: 322 NAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 22/208 (10%), Positives = 48/208 (23%), Gaps = 49/208 (23%)
Query: 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGA 190
+ ++V ++D+G+ + +
Sbjct: 37 MSLTDKNTPVVVSVVDSGV-------AFI--GGL-------------------SDSEFAK 68
Query: 191 RSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAP 250
SF + + HGT +S I G GV P
Sbjct: 69 FSF--------TQDGSPFPVKKSEALYIHGTAMASLIASRY-------GIY-----GVYP 108
Query: 251 MARIAMYKVLFSNDNLAAAET-DVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309
A I+ +V+ + + + I+++S + +
Sbjct: 109 HALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR 168
Query: 310 AALKRGIFVACSAGNSGPRPYSIRNGAP 337
+ + GN G +
Sbjct: 169 MGRNNDRLIVAAVGNDGADIRKLSAQQR 196
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 38/132 (28%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
++++F++ + DI+APGV I + + ++ Y LSGT+M+
Sbjct: 214 RLSDFTNTNEEI--------DIVAPGVGIKSTY-LDS------------GYAELSGTAMA 252
Query: 553 CPHAAAIAALVKATHRD-----WSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDF 607
PH A AL+ D S I + L+ A + G
Sbjct: 253 APHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPI------------GFTAQAEGN 300
Query: 608 GAGHINPNKAMD 619
G ++ + +
Sbjct: 301 GFLTLDLVERIT 312
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-17
Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 69/238 (28%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHC--NRKL 187
VW A+ G+ I+G++DTG H ++
Sbjct: 33 VWRASAKGAGQIIGVIDTGC-----------------------------QVDHPDLAERI 63
Query: 188 IGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIG 247
IG + + D + D GHGTH + T+ + G G
Sbjct: 64 IGGVNLTTD---------YGGDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-G 105
Query: 248 VAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI------ADGVDIMSLSL--AFPETTF 299
VAP A + + K L + + + + + A+ + + I+++SL
Sbjct: 106 VAPKADLFIIKAL--SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEEL 163
Query: 300 DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRN-----GAPWITAVGAGTVDREFA 352
+ A+ A+ + V C+AGN G + AVGA D +
Sbjct: 164 HD---AVK--YAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLS 216
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 7e-17
Identities = 41/233 (17%), Positives = 64/233 (27%), Gaps = 60/233 (25%)
Query: 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSH---CNRKL 187
+ ++ + I+DTG+ +H N
Sbjct: 139 YDDLPKHANTKIAIIDTGV-----------------------------MKNHDDLKNNFS 169
Query: 188 IGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIG 247
+++ G T D D GHGT S A G IG
Sbjct: 170 TDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIG 217
Query: 248 VAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIG 307
VAP + MY+V + V + QA DG ++++S+ +
Sbjct: 218 VAPNNKFTMYRVF---GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFR 274
Query: 308 AFA-------------ALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTV 347
A K+ V +AGN G + G G V
Sbjct: 275 KDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEV 327
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 3e-16
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 30/137 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD---------Y 543
++ FS+ G + DI APG + Y
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 544 TLLSGTSMSCPHAAAIAALVKA-THRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602
+GT+++ P + AL+ H + L +N
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPF----------- 449
Query: 603 TPLDFGAGHINPNKAMD 619
+G G ++ KA++
Sbjct: 450 --SRYGHGELDVYKALN 464
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 48/140 (34%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+A+FS+R P ++ APGVDIL+ + P++ Y L GT+M+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTY-PDD------------SYETLMGTAMA 248
Query: 553 CPHAAAIAALVKATHR-------------DWSSAAIRSALMTTADVLDNAYGMITDKSTG 599
PH + + AL++A + D S +R L TAD L G
Sbjct: 249 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDL------------G 296
Query: 600 VAGTPLDFGAGHINPNKAMD 619
G D+G G + A+
Sbjct: 297 PTGWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 51/248 (20%), Positives = 78/248 (31%), Gaps = 78/248 (31%)
Query: 130 VWPAA-GFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHC--NRK 186
VW G S I V +LDTG+ + H
Sbjct: 20 VWSITDGSVSVIQVAVLDTGV-----------------------------DYDHPDLAAN 50
Query: 187 LIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAI 246
+ S +G + D GHGTH TI G
Sbjct: 51 IAWCVSTLRG--------KVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV- 93
Query: 247 GVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD--------------------GVD 286
GVAP +I +VL + + + +D+ G++QAI +
Sbjct: 94 GVAPGVQIYSVRVL--DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAE 151
Query: 287 IMSLSL--AFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGA 344
++S+SL ++ + I A GI + ++GN G S P + AVGA
Sbjct: 152 VISMSLGGPADDSYLYD---MII--QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
Query: 345 GTVDREFA 352
+ A
Sbjct: 207 IDSNDNIA 214
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 8e-16
Identities = 62/319 (19%), Positives = 103/319 (32%), Gaps = 92/319 (28%)
Query: 72 THLYTYNHVMDGFSAVLSKNQLEQLQKMPG---------HHATYLESFGHLHTTRTPQFL 122
+Y + + + N + +L+KMPG S+ +T+ Q +
Sbjct: 25 HIVYQFKLI-PAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTI 83
Query: 123 --GLKK--HAGVWPAA-GFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVE 177
G+++ VW G S I V +LDTG+
Sbjct: 84 PWGIERVKAPSVWSITDGSVSVIQVAVLDTGV---------------------------- 115
Query: 178 FNTSHC--NRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDV 235
+ H + S +G + D GHGTH TI
Sbjct: 116 -DYDHPDLAANIAWCVSTLRG--------KVSTKLRDCADQNGHGTHVIGTIAAL----- 161
Query: 236 DHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD------------ 283
G GVAP +I +VL + + + +D+ G++QAI
Sbjct: 162 ---NNDIGVV-GVAPGVQIYSVRVL--DARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 215
Query: 284 --------GVDIMSLSL--AFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIR 333
+++S+SL ++ + I A GI + ++GN G S
Sbjct: 216 IAGDPDDDAAEVISMSLGGPADDSYLYD---MII--QAYNAGIVIVAASGNEGAPSPSYP 270
Query: 334 NGAPWITAVGAGTVDREFA 352
P + AVGA + A
Sbjct: 271 AAYPEVIAVGAIDSNDNIA 289
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 48/140 (34%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+A+FS+R P ++ APGVDIL+ + P++ Y L GT+M+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTY-PDD------------SYETLMGTAMA 323
Query: 553 CPHAAAIAALVKATHR-------------DWSSAAIRSALMTTADVLDNAYGMITDKSTG 599
PH + + AL++A + D S +R L TAD L G
Sbjct: 324 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDL------------G 371
Query: 600 VAGTPLDFGAGHINPNKAMD 619
G D+G G + A+
Sbjct: 372 PTGWDADYGYGVVRAALAVQ 391
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 31/131 (23%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
A+FS+ G + D+ APG DIL+ + +P+ D Y + ++GTSM+
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDILSTV-DSGTRRPVSDAY-----SFMAGTSMA 278
Query: 553 CPHAAAIAALVKA----THRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFG 608
PH + +AALV + +++ + A ++ L++T + G
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN-------------GRLDRALG 325
Query: 609 AGHINPNKAMD 619
+G ++ A++
Sbjct: 326 SGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 35/211 (16%), Positives = 61/211 (28%), Gaps = 38/211 (18%)
Query: 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLI 188
VW G +++V ++DTGI D G + + + +
Sbjct: 23 KVWDMGFTGQNVVVAVVDTGILHHR---DLNA-----NVLPGYDFISNSQISLDGDGRDA 74
Query: 189 GARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGV 248
+ D HG+H + TI G A GV
Sbjct: 75 DPFDEGDWFDNWACGGRPDPRKE-RSDSSWHGSHVAGTIAAVT-------NNRIGVA-GV 125
Query: 249 APMARIAMYKVLFSNDNLAAAETDVLAGMDQAI----------ADGVDIMSLSL---AFP 295
A A++ + L ++D+ G+ A + ++++SL
Sbjct: 126 AYGAKVVPVRAL---GRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQC 182
Query: 296 ETTFDENPIAIGAFAALKRGIFVACSAGNSG 326
I A + G V +AGN
Sbjct: 183 SYNAQT---MID--RATRLGALVVVAAGNEN 208
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 30/112 (26%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
++FS+ G + D+ APG I +AW Y +SGTSM+
Sbjct: 184 SRSSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISGTSMA 222
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTP 604
PH A +AAL + + + L + A +K + GT
Sbjct: 223 TPHVAGVAALYLQENNGLTPLQLTGLLNSRA---------SENKVSDTRGTT 265
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 204 ISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSN 263
D+ D GHGTH + TIGGS+ GVA I +VL +
Sbjct: 55 YDFVDNDADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVL--S 98
Query: 264 DNLAAAETDVLAGMDQAIADGV--DIMSLSLAFPE-TTFDENPIAIGAFAALKRGIFVAC 320
+ + + V++G+D + + ++SL + T D A+ A++ G+
Sbjct: 99 CSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDS---AVQ--GAIQSGVSFML 153
Query: 321 SAGNSGP--RPYSIRNGAPWITAVGAGTVDREFA 352
+AGNS S P VG+ T +
Sbjct: 154 AAGNSNADACNTSPAR-VPSGVTVGSTTSSDSRS 186
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
++FS+ G L DI APG I ++W +N + +SGTSM+
Sbjct: 186 SRSSFSNYGTCL--------DIYAPGSSITSSWYTSN-----------SATNTISGTSMA 226
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
PH A +AAL + + S A + + L T A
Sbjct: 227 SPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 25/152 (16%)
Query: 205 STTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND 264
D+ D GHGTH + TIGGS GVA + +VL N
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTIGGSTY--------------GVAKNVNVVGVRVL--NC 101
Query: 265 NLAAAETDVLAGMDQAIADGV--DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSA 322
+ + + + V+AG++ + + ++SL + ++ + AA+ GI +A
Sbjct: 102 SGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAA 157
Query: 323 GNSGP--RPYSIRNGAPWITAVGAGTVDREFA 352
GN YS A VG+ T + +
Sbjct: 158 GNDNSNACNYSPAR-AADAITVGSTTSNDSRS 188
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
+T+ T + A+FS+ G + D+ APG I +AW ++ T
Sbjct: 174 LTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD-----------TA 214
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
L+GTSM+ PH A +AAL + + A++ SA++ A
Sbjct: 215 TQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 33/150 (22%)
Query: 211 DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAE 270
+ +D GHGTH + TIGG GVA + +VL + N + +
Sbjct: 62 GNGQDCNGHGTHVAGTIGGVTY--------------GVAKAVNLYAVRVL--DCNGSGST 105
Query: 271 TDVLAGMDQAIADGVD--IMSLSLAFPE-TTFDENPIAIGAFAALKRGIFVACSAGNSGP 327
+ V+AG+D + + ++SL T D A+ ++ G+ A +AGN
Sbjct: 106 SGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDN---AVK--NSIAAGVVYAVAAGNDNA 160
Query: 328 R-----PYSIRNGAPWITAVGAGTVDREFA 352
P VGA T A
Sbjct: 161 NACNYSPAR----VAEALTVGATTSSDARA 186
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSS 572
D+ APG DI+ A + T + SGTS + H A IAA++ + + +
Sbjct: 208 DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 573 AAIRSALMTTA--DVLDNAYGMITDKSTGVAGTP 604
A +R L+ + DV++ A TP
Sbjct: 257 AELRQRLIHFSAKDVINEA----WFPEDQRVLTP 286
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 35/168 (20%)
Query: 196 GIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIA 255
+N T + HGTH + + G GVA A +
Sbjct: 51 TDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMR 96
Query: 256 MYKVLFSNDNLAAAETDVLAGMDQAIAD------GVDIMSLSLAFPETTFDENPIAIGAF 309
+VL N + L G++ G ++ L LA +
Sbjct: 97 SLRVL--NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ---- 150
Query: 310 AALKRGIFVACSAGNSGPR-----PYSIRNGAPWITAVGAGTVDREFA 352
+ G+ + +AGN P S AP + VGA +
Sbjct: 151 RLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGATNAQDQPV 194
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 36/154 (23%)
Query: 211 DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAE 270
+ RD GHGTH + TIG GVA I KVL +D+ + +
Sbjct: 62 STARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVL--DDSGSGSL 105
Query: 271 TDVLAGMDQAIADGVD-------IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAG 323
++++AGMD +D + S+SL + A G+FVA +AG
Sbjct: 106 SNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAG 161
Query: 324 NSGP-----RPYSIRNGAPWITAVGAGTVDREFA 352
N P S P + VGA + +
Sbjct: 162 NDNRDAANTSPAS----EPTVCTVGATDSNDVRS 191
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+ FS+ G + DI APG I + W+ +SGTSM+
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIGG-------------RTNTISGTSMA 227
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
PH A +AA + S+ A+ + T +
Sbjct: 228 TPHIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 38/158 (24%)
Query: 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLA 267
Y S RD GHGTH + T+G GVA ++ KVL +DN +
Sbjct: 58 TYYYSSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVL--DDNGS 101
Query: 268 AAETDVLAGMDQAIADGVD-------IMSLSLAFPE-TTFDENPIAIGAFAALKRGIFVA 319
+ ++AGMD +D + + SLSL ++ + A G+ VA
Sbjct: 102 GQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS---AAA--RLQSSGVMVA 156
Query: 320 CSAGNSGPR-----PYSIRNGAPWITAVGAGTVDREFA 352
+AGN+ P S P + VGA +
Sbjct: 157 VAAGNNNADARNYSPAS----EPSVCTVGASDRYDRRS 190
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMS 552
+ ++FS+ G L DI PG DIL+ W+ +SGTSM+
Sbjct: 188 RRSSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRSISGTSMA 226
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
PH A +AA + ++A+ + TA
Sbjct: 227 TPHVAGLAAYLMTLG-KTTAASACRYIADTA 256
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 52/380 (13%), Positives = 97/380 (25%), Gaps = 114/380 (30%)
Query: 448 EVFNMPFVA-VNLKDGE------LVK---KYIINVGNATVSIKFQITILGTKPAPQVANF 497
VF FV + KD + L K +II +A L +K V F
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 498 SSRGPSLRS--PWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPH 555
LR +++ P P + Y+ L + + +
Sbjct: 83 V--EEVLRINYKFLMSP----------IKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 556 AAAIAALVKATHRDWSSAAIRSALMTTADVLDNA-----YGMI-TDKSTGVAGTPLDFGA 609
+ +R AL+ L A G++ + K+ L +
Sbjct: 130 NVSRLQPYL---------KLRQALLE----LRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 610 GHINPNKA------------------------MDPGLVVLTGTSD---FTCQYANLDLN- 641
K +DP + S +L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 642 ------YPSFIIILNNTNTA----SFTFK-RVL-----TNVADTKSAYTAAVKAPAGMKV 685
Y + +++L N A +F ++L V D + A +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-------FLSAATTTHI 289
Query: 686 KVQPATLSFAGKYSKAEFSLTVNINLGS------AVSP---------KSNFLGNFGYLTW 730
+ +++ K+ ++ +P + L + W
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--W 347
Query: 731 YDVNGKHLVRSPIVSAFANS 750
VN L I+ + N
Sbjct: 348 KHVNCDKLTT--IIESSLNV 365
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 89/697 (12%), Positives = 189/697 (27%), Gaps = 192/697 (27%)
Query: 48 HHHHWYMSVLSSLSSSDDGDGDAPTHL-------YTYNHVMDGFSAVLSKNQLEQLQKMP 100
HHHH +M D + + V D ++LSK +++ +
Sbjct: 1 HHHHHHMD--FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 101 GHHATYLESFGHLHTTRT---PQFLG--LKKHAGVWPAAGFGSDIIVGILDTGIWPESKS 155
+ L F L + + +F+ L+ + + + ++ + T ++ E +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 156 YDDRGMPPVPER--WRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNG--------LNIS 205
+ R + + + L+ R +K + +G + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLR-------QALLELRP-AKNVLIDGVLGSGKTWVALD 169
Query: 206 TTDDY------------------DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIG 247
Y +SP I + DH K
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 248 VAPMARIAM----YK----VLFSNDNLAAAET----DV-----LAGMDQAIADGVDIMS- 289
+ R + Y+ VL N+ A+ ++ L + + D + +
Sbjct: 230 IQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 290 --LSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTV 347
+SL T ++ C + P + P ++
Sbjct: 287 THISLDHHSMTLTP-DEVKSLLLK-----YLDCRPQDL---PREVLTTNPRRLSI-IAES 336
Query: 348 DREFAAHV----TLGNEEL-TVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKA 402
R+ A + ++L T+I S+ L EP + +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSL--NVL-------------------EPA--EYRK 373
Query: 403 VAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVF-----NMPFVAV 457
++ +L ++F + H+ + ++ V
Sbjct: 374 -----------------MFDRL----------SVFPPSA--HIPTILLSLIWFDVIKSDV 404
Query: 458 NLKDGELVKKYIINVGNA--TVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515
+ +L K ++ T+SI I + I+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRS-------------IV 450
Query: 516 APGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD--WSSA 573
+I + ++ P D Y Y+ + G + L + D +
Sbjct: 451 D-HYNIPKTFDSDDLIPPYLDQYF---YSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 574 AIR---SALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSD 630
IR +A + +L+ + L F +I N LV D
Sbjct: 506 KIRHDSTAWNASGSILN----TLQQ---------LKFYKPYICDNDPKYERLVNAIL--D 550
Query: 631 FTCQYANLDLNYPSFIII---LNNTNTASF--TFKRV 662
F + + ++ L + A F K+V
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 39/294 (13%), Positives = 82/294 (27%), Gaps = 91/294 (30%)
Query: 69 DAPTHLYTYNHVM-DGFSAVLSKNQLEQLQKMPGHHATYLESFGHLHTTRTPQFLGLKKH 127
D + HV D + ++ ++ L L+ P + +
Sbjct: 339 DGLATWDNWKHVNCDKLTTII-ESSLNVLE--PAEYRKMFDRLS---------------- 379
Query: 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGM------PPVPERW--RGACEV-GVEF 178
V+P + I +L IW + D + + E+ + +
Sbjct: 380 --VFPP---SAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 179 NTS---------HCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH-GTHTSSTIG 228
H R ++ + K + L D Y F+ H G H +
Sbjct: 434 ELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEH 486
Query: 229 GSRV--------------QDVDHFGYAKGTAIGVAP-MARIAMYKVLFSN---------- 263
R+ Q + H A + + + ++ YK +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 264 ---DNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKR 314
D L E +++ + D++ ++L + I A ++R
Sbjct: 547 AILDFLPKIEENLI------CSKYTDLLRIALMAE-----DEAIFEEAHKQVQR 589
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 3e-07
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 16/166 (9%)
Query: 481 FQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLL 540
+ ITI +S ++ G I ++ +
Sbjct: 219 YSITIGAIDHKDLHPPYSEGCSAVM----AVTYSSGSGEYIHSSDINGR----------- 263
Query: 541 TDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGV 600
GTS + P AA + L+ + + + ++ + +A L+ S
Sbjct: 264 -CSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG 322
Query: 601 AGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFI 646
+G G I+ +K ++ + L ++ +
Sbjct: 323 KKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNS 368
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 35/238 (14%), Positives = 63/238 (26%), Gaps = 63/238 (26%)
Query: 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLI 188
+W G+ ++ I+D G+ E++ D
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------------- 78
Query: 189 GARSFSKGIRQNGLNISTTDDYDSPR-DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIG 247
+ + + + PR HGT + I +G
Sbjct: 79 ----------EGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAK--------KGNNFCGVG 120
Query: 248 VAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIG 307
V A+I+ ++L + D A + D DI S S + +
Sbjct: 121 VGYNAKISGIRILSGDITTE----DEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDL 175
Query: 308 AFAALK---------RGIFVACSAGNSGPR----PYSIRNGAPWITAVGAGTVDREFA 352
AL +G ++GN G R Y + + +GA
Sbjct: 176 VKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHP 233
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 4e-07
Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 519 VDILAAWVPNNPWQPIRDDYLLTDYTL-LSGTSMSCPHAAAIAALVKATHRDWSSAAIRS 577
N + I L T +GTS S P AA I AL +++ + ++
Sbjct: 229 TLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQH 288
Query: 578 ALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYAN 637
++ T+ G + +G G ++ + T C
Sbjct: 289 LVVQTSKPAHLNADDWATNGVGRKVSH-SYGYGLLDAGAMVALAQNWTTVAPQRKCIVEI 347
Query: 638 LDLNYP 643
L
Sbjct: 348 LVEPKD 353
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 37/252 (14%), Positives = 61/252 (24%), Gaps = 64/252 (25%)
Query: 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSH--CNRK 186
W G I+V ILD GI +H
Sbjct: 29 EAWAQGFTGHGIVVSILDDGI-----------------------------EKNHPDLAGN 59
Query: 187 LIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAI 246
SF N + + HGT + + +
Sbjct: 60 YDPGASFD----VND-QDPDPQPRYTQMNDNRHGTRCAGEVAAVAN---NGVCGV----- 106
Query: 247 GVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGVDIMSLSLAFPETTFDENPIA 305
GVA ARI ++L TD + + + + I S S + + A
Sbjct: 107 GVAYNARIGGVRMLDGEV------TDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPA 160
Query: 306 IGAFAALK---------RGIFVACSAGNSGPR----PYSIRNGAPWITAVGAGTVDREFA 352
A A G ++GN G + + ++ + T
Sbjct: 161 RLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVP 220
Query: 353 AHVTLGNEELTV 364
+ + L
Sbjct: 221 WYSEACSSTLAT 232
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 33 YIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQ 92
Y++ + + + L + G L+ ++ ++ GF +S +
Sbjct: 50 YVVVLKEETHLSQSERT-------ARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDL 102
Query: 93 LEQLQKMPG 101
LE K+P
Sbjct: 103 LELALKLPH 111
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.92 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.98 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.96 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.89 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.75 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.69 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.62 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.62 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.49 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.68 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.45 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.32 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.1 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 91.01 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 89.75 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 89.64 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 89.63 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 88.3 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 84.21 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 80.4 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-113 Score=989.30 Aligned_cols=614 Identities=45% Similarity=0.713 Sum_probs=544.4
Q ss_pred cccCCccccccccCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeecc
Q 037455 115 TTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFS 194 (755)
Q Consensus 115 ~~~~~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~ 194 (755)
++++|+|+|+.+..++|..+.+|+||+|||||||||++||+|.+.+++++|.+|+|.|+.|.+|+...||+|+++.++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 47889999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHH
Q 037455 195 KGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVL 274 (755)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~ 274 (755)
+++.... ++...+..+++|.+||||||||||||+..++.+.+|++.|.+.||||+|+|++||+|+..+ +..++++
T Consensus 81 ~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~ 155 (649)
T 3i6s_A 81 KGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG---TFTSDLI 155 (649)
T ss_dssp HHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTE---ECHHHHH
T ss_pred Ccccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCC---CCHHHHH
Confidence 7765332 2334455678999999999999999999888888899889999999999999999999887 8999999
Q ss_pred HHHHHHHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEE
Q 037455 275 AGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAH 354 (755)
Q Consensus 275 ~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~ 354 (755)
+||+||+++|+||||||||....++..+++..++++|.++|++||+||||+|+...++++.+||+|+|||++.+|.|...
T Consensus 156 ~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~ 235 (649)
T 3i6s_A 156 AAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235 (649)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEE
T ss_pred HHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeE
Confidence 99999999999999999998766777889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccc--cceEEEEeecCCCchhHHHHHHHHHHcCc
Q 037455 355 VTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAV--AGKYIFCAFDYNGNVTVYQQLEEVRKSGA 432 (755)
Q Consensus 355 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~~~~~~~~~~~~~~~~~ga 432 (755)
+.+++++. +.|.++|........+|++|.. ....|.+..+++..+ +|||++|.|+.|.+. +|..+++++|+
T Consensus 236 ~~lgng~~-~~g~sl~~~~~~~~~~plv~~~---~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~---~k~~~~~~~Ga 308 (649)
T 3i6s_A 236 LTLGNGLK-IRGWSLFPARAFVRDSPVIYNK---TLSDCSSEELLSQVENPENTIVICDDNGDFSD---QMRIITRARLK 308 (649)
T ss_dssp EEETTSCE-EEEECCCSSCBCEEEEEEECCT---TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHH---HHHHHHHHTCS
T ss_pred EEeCCCcE-EeeeecccCcccCcceeeEecc---cccccccccccccccccCCcEEEEeCCCccHH---HHHHHHHhcCc
Confidence 99999999 9999999844347789999976 467899887777767 999999999999887 99999999999
Q ss_pred eEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccC
Q 037455 433 AGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKP 512 (755)
Q Consensus 433 ~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKP 512 (755)
.|+|++|+. .....+.+.+|+++|+..+|+.|++|++++.+++++|.+..+..+....+.++.||||||+.+.+++|||
T Consensus 309 ~g~i~~n~~-~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKP 387 (649)
T 3i6s_A 309 AAIFISEDP-GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387 (649)
T ss_dssp EEEEECCCG-GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSC
T ss_pred eEEEEecCc-cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCC
Confidence 999999986 4455667899999999999999999999999999999999999888889999999999999988899999
Q ss_pred eeEeCCCcEEeeecCCCCCCCCCCCC-cccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCc
Q 037455 513 DILAPGVDILAAWVPNNPWQPIRDDY-LLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYG 591 (755)
Q Consensus 513 DI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~ 591 (755)
||+|||++|+++|+..........+. +...|..+||||||||||||+||||||+||+|+|++||++||+||++++..+.
T Consensus 388 DI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~ 467 (649)
T 3i6s_A 388 DILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467 (649)
T ss_dssp CEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSS
T ss_pred eEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCC
Confidence 99999999999999865433332222 33589999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCcccccccCcCccCCCCeEEE-----------------------ccccccc--cCCCCCCCCCccee
Q 037455 592 MITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVL-----------------------TGTSDFT--CQYANLDLNYPSFI 646 (755)
Q Consensus 592 ~~~~~~~~~~~~~~~~G~G~in~~~Av~~~lv~~-----------------------~~~~~~~--~~~~~~~ln~~s~~ 646 (755)
++.+...+.+++++.||+|+||+.+|++|+|||- ++ .+.+ |+....+||||||+
T Consensus 468 ~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~-~~~~~~C~~~~~~lNyPs~~ 546 (649)
T 3i6s_A 468 PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR-SSASHNCSNPSADLNYPSFI 546 (649)
T ss_dssp BCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT-TTSCC-CCCCCCCCCCSSEE
T ss_pred cccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec-CCCcCCCCCchhhcCCCcEE
Confidence 9988766788999999999999999999999992 22 2334 76567799999999
Q ss_pred eee-cCCCCce--EEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCee
Q 037455 647 IIL-NNTNTAS--FTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLG 723 (755)
Q Consensus 647 ~~~-~~~~~~~--~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~ 723 (755)
+.+ ....... ++|+|||||+|+...+|+++++.|.|++|+|+|++|+|.+.+|+++|+|||+... ...+. +
T Consensus 547 ~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~----~~~~~--~ 620 (649)
T 3i6s_A 547 ALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIG----DEGQS--R 620 (649)
T ss_dssp EEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECC----C---C--C
T ss_pred eecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecc----cCCCc--e
Confidence 987 3211012 8999999999998999999999999999999999999988999999999999875 34555 8
Q ss_pred EEEEEEEEeeCCceEEEeEEEEEEc
Q 037455 724 NFGYLTWYDVNGKHLVRSPIVSAFA 748 (755)
Q Consensus 724 ~~G~~~~~~~~~~~~v~~P~~~~~~ 748 (755)
.||+|+|.+.+++|.||+||+|++.
T Consensus 621 ~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 621 NVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999322299999999999986
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-102 Score=898.84 Aligned_cols=585 Identities=39% Similarity=0.639 Sum_probs=501.1
Q ss_pred cccCCccccccccCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeecc
Q 037455 115 TTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFS 194 (755)
Q Consensus 115 ~~~~~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~ 194 (755)
++++|+|+|+++ .+|.+..+|+||+|||||||||++||+|.|+++.+++.+|+|.|+.+.+| .||+|++++++|.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~---~~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSC---CCCSSEEEEEECC
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCc---ccCcceeeeeecc
Confidence 578999999964 68888899999999999999999999999999999999999999999887 4999999999998
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHH
Q 037455 195 KGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVL 274 (755)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~ 274 (755)
.+.... ..+..+|+|++||||||||||||+..++.+.+|++.+.++||||+|+|++||||++.+ +..++++
T Consensus 76 ~~~~~~------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~di~ 146 (621)
T 3vta_A 76 IGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG---CSDTDIL 146 (621)
T ss_dssp CSSSCC------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTE---ECHHHHH
T ss_pred cCCccC------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCC---CCHHHHH
Confidence 765332 2345568999999999999999998888888888888899999999999999999988 8899999
Q ss_pred HHHHHHHhCCCcEEEEccCCCC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeE
Q 037455 275 AGMDQAIADGVDIMSLSLAFPE-TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAA 353 (755)
Q Consensus 275 ~ai~~a~~~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~ 353 (755)
+||++|+++|+||||||||+.. ..+..++++.+++++.++|+++|+||||+|+...++++.+||+++|++++.+|.+..
T Consensus 147 ~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~ 226 (621)
T 3vta_A 147 AAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226 (621)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEE
T ss_pred HHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccccee
Confidence 9999999999999999999876 445678899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCceEEEeeeeccCCCCCCceeeEEeccCC-------CCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHH
Q 037455 354 HVTLGNEELTVIGKSVYPENLFVSREPIYFGYGN-------RSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEE 426 (755)
Q Consensus 354 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 426 (755)
.+.++++.. +.+.+++. .....+++++.... .....|.+..+++.+++|||++|.++.. .+..+
T Consensus 227 ~~~~~~~~~-~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~------~~~~~ 297 (621)
T 3vta_A 227 QVQIGNGQS-FQGVSINT--FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFG------PHEFF 297 (621)
T ss_dssp EEEETTSCE-EEEBCCCC--SCCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCC------HHHHH
T ss_pred eEEeccCce-eeeeeccc--CCCcccccccccccccccccccccccccccccccccccceEEEEecCCC------hhHHh
Confidence 999999988 87777654 23456666665442 1256788889999999999999986543 67778
Q ss_pred HHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCC
Q 037455 427 VRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRS 506 (755)
Q Consensus 427 ~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (755)
....|+.++|++++... ..+.+.+|...+...++..++.|+.....+..++....+. .....+.++.||||||+...
T Consensus 298 ~~~~Ga~gvi~~~~~~~--~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~~~ 374 (621)
T 3vta_A 298 KSLDGAAGVLMTSNTRD--YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRAT 374 (621)
T ss_dssp HHHTTCSEEEEECSCCS--SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCSCTTC
T ss_pred hhhcceeEEEEEecCCC--cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCCCCCC
Confidence 88899999999988322 2356789999999999999999999998888877554443 34568899999999999877
Q ss_pred CCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 037455 507 PWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586 (755)
Q Consensus 507 ~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~ 586 (755)
++++||||+|||++|+|+++....... ......|..|||||||||||||+||||||+||+|+|++||++||+||+++
T Consensus 375 ~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~ 451 (621)
T 3vta_A 375 KDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPM 451 (621)
T ss_dssp TTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCC
T ss_pred CCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcc
Confidence 899999999999999999986543221 22345899999999999999999999999999999999999999999988
Q ss_pred ccCCcccccCCCCCCCCCCcccccccCcCccCCCCeEEEccc----------------------cccccC----CCCCCC
Q 037455 587 DNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGT----------------------SDFTCQ----YANLDL 640 (755)
Q Consensus 587 ~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~lv~~~~~----------------------~~~~~~----~~~~~l 640 (755)
+.. ..++.++.||+|+||+.+|++|+|||.... ....|. ....+|
T Consensus 452 ~~~---------~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 522 (621)
T 3vta_A 452 NAR---------FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDL 522 (621)
T ss_dssp CTT---------TCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGS
T ss_pred ccc---------CCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCccccc
Confidence 754 345678899999999999999999992210 122343 345689
Q ss_pred CCcceeeeecCCCCceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCC
Q 037455 641 NYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSN 720 (755)
Q Consensus 641 n~~s~~~~~~~~~~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~ 720 (755)
|||||++.+......+++|+|||||++....+|+++++.|+|++|+|+|++|+|.+.+|+++|+|||+.. .++.
T Consensus 523 N~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~------~~~~ 596 (621)
T 3vta_A 523 NYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS------IKGF 596 (621)
T ss_dssp CCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC------CCSS
T ss_pred ccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec------CCCc
Confidence 9999998765444478999999999999999999999999999999999999998889999999999854 3455
Q ss_pred CeeEEEEEEEEeeCCceEEEeEEEEEE
Q 037455 721 FLGNFGYLTWYDVNGKHLVRSPIVSAF 747 (755)
Q Consensus 721 ~~~~~G~~~~~~~~~~~~v~~P~~~~~ 747 (755)
++||+|+| +|++|.||+||+|+.
T Consensus 597 --~~~g~l~w--~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 597 --VVSASLVW--SDGVHYVRSPITITS 619 (621)
T ss_dssp --EEEEEEEE--ECSSCCCEEEEEEEC
T ss_pred --eEEEEEEE--EcCCEEEEeCEEEEE
Confidence 99999999 899999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-80 Score=746.02 Aligned_cols=541 Identities=21% Similarity=0.253 Sum_probs=417.1
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceecccccc----------ccccCceeeeeeeccccc
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFN----------TSHCNRKLIGARSFSKGI 197 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~----------~~~~n~ki~g~~~~~~~~ 197 (755)
..+|.++.+|+||+|||||||||++||+|.+ +..|++.|..+..|. ..+||+|++++++|..+.
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~ 80 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG 80 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeeccccCC
Confidence 5689999999999999999999999999984 356777776443321 236999999999987642
Q ss_pred cccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHH
Q 037455 198 RQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGM 277 (755)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai 277 (755)
...|+.||||||||||||+...+.+. .+.+.||||+|+|++||+|++.+. .+..+++++||
T Consensus 81 --------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~-~~~~~~i~~Ai 141 (926)
T 1xf1_A 81 --------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGL-ADYARNYAQAI 141 (926)
T ss_dssp --------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCH-HHHHHHHHHHH
T ss_pred --------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCC-CCcHHHHHHHH
Confidence 12288999999999999987543321 234689999999999999987652 02456889999
Q ss_pred HHHHhCCCcEEEEccCCCC--CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-------------C--ccccCCCceE
Q 037455 278 DQAIADGVDIMSLSLAFPE--TTFDENPIAIGAFAALKRGIFVACSAGNSGPRP-------------Y--SIRNGAPWIT 340 (755)
Q Consensus 278 ~~a~~~g~dVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~--~~~~~~p~vi 340 (755)
+||+++|+||||||||... .....+++..+++.|.++|++||+||||+|... . ..++.+||+|
T Consensus 142 ~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vi 221 (926)
T 1xf1_A 142 RDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTL 221 (926)
T ss_dssp HHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSE
T ss_pred HHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceE
Confidence 9999999999999999864 234466788899999999999999999999632 1 2234589999
Q ss_pred EeccccccceeeEEEEe-CCceEEEeeeeccC-CCC-CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCc
Q 037455 341 AVGAGTVDREFAAHVTL-GNEELTVIGKSVYP-ENL-FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGN 417 (755)
Q Consensus 341 tVga~~~~~~~~~~~~~-~~g~~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 417 (755)
+|||++.++.+...+.+ +++.. ..+.+++. ..+ ....+++++.+. .|.+..+ .+++|||++|.|+.|.+
T Consensus 222 tVgA~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~~~-----g~~~~~~--~~v~Gkivl~~rg~~~~ 293 (926)
T 1xf1_A 222 TVASYSPDKQLTETVRVKTADQQ-DKEMPVLSTNRFEPNKAYDYAYANR-----GTKEDDF--KDVKGKIALIERGDIDF 293 (926)
T ss_dssp EEEEEBCSEEEEEEEEEECTTSC-EEEEEEEEESCCCTTCCEEEEECTT-----SCSTTTT--TTCTTSEEEEECCSSCH
T ss_pred EEeccccccccccceEEEcCCCc-ceeeEEEecCCCCCCceEEEEECCC-----CCCccch--hhcCCeEEEEECCCCCH
Confidence 99999999999888877 44433 34444443 222 356799999754 3765555 68999999999999988
Q ss_pred hhHHHHHHHHHHcCceEEEEecC-CCCc--CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeee--eeCCcCCC
Q 037455 418 VTVYQQLEEVRKSGAAGAIFSAD-SRQH--LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKPAP 492 (755)
Q Consensus 418 ~~~~~~~~~~~~~ga~g~i~~n~-~g~~--~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~--~~~~~~~~ 492 (755)
. +|..+++++|+.++|++|+ .+.. .......+|+.+++..++..|+. .+. .++++..+ .......+
T Consensus 294 ~---~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~--~ti~~~~~~~~~~~~~~~ 364 (926)
T 1xf1_A 294 K---DKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQ--KTITFNATPKVLPTASGT 364 (926)
T ss_dssp H---HHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSS--CEEEECSSCEEEECSSCS
T ss_pred H---HHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCc--eEEEecccceecccCCcc
Confidence 8 9999999999999999998 3322 12346789999999999998873 333 44555443 34455678
Q ss_pred ccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----hCC
Q 037455 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----THR 568 (755)
Q Consensus 493 ~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p 568 (755)
.++.||||||+.+ +++||||+|||++|+++++.+ .|..+||||||||||||+||||+| .||
T Consensus 365 ~~a~FSSrGp~~~--~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P 429 (926)
T 1xf1_A 365 KLSRFSSWGLTAD--GNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYP 429 (926)
T ss_dssp BCCTTSCCCBCTT--SCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSS
T ss_pred eeccccCCCCCCC--CccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCC
Confidence 9999999999975 899999999999999999864 899999999999999999999964 599
Q ss_pred CCCHHH----HHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCCCCeEEEccccccccCCCCCCCCCcc
Q 037455 569 DWSSAA----IRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPS 644 (755)
Q Consensus 569 ~ls~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~lv~~~~~~~~~~~~~~~~ln~~s 644 (755)
+|+|+| ||++||+||+++...+. ...+++++||+|+||+.+|+++.+ |+.. . ..+.++
T Consensus 430 ~~sp~~~~~~Iks~L~~TA~~~~~~~~-------~~~~~~~~~G~G~vn~~~A~~~~~-~l~~-~---------~~~~~~ 491 (926)
T 1xf1_A 430 DMTPSERLDLAKKVLMSSATALYDEDE-------KAYFSPRQQGAGAVDAKKASAATM-YVTD-K---------DNTSSK 491 (926)
T ss_dssp SSHHHHHHHHHHHHHHHHSBCCEEGGG-------TEECCHHHHTTCBCCHHHHHHCSE-EEEE-S---------SSSCSC
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccCCC-------CccCChhccCCCccCHHHhcCCCe-EEEc-C---------CCCcce
Confidence 999997 99999999998764321 234678899999999999999976 3322 0 111123
Q ss_pred eeeeecCCCCceEEEEEEEEecCCCC--ceEEEEEEc--CCCcEEEEEeCeE--------EEecCCcEEEEEEEEEecCC
Q 037455 645 FIIILNNTNTASFTFKRVLTNVADTK--SAYTAAVKA--PAGMKVKVQPATL--------SFAGKYSKAEFSLTVNINLG 712 (755)
Q Consensus 645 ~~~~~~~~~~~~~~~~~tv~N~~~~~--~ty~~~~~~--~~g~~v~v~p~~~--------~~~~~g~~~~~~vt~~~~~~ 712 (755)
+.+... . .+.+++|||+|+|+.+ .+|++++.. |.+..++|.|..+ ++ ++||+++|+|||++...
T Consensus 492 i~l~~~--~-~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv-~ag~~~~~~vt~~~~~~ 567 (926)
T 1xf1_A 492 VHLNNV--S-DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITI-PANSSKQVTVPIDASRF 567 (926)
T ss_dssp EEEEEE--C-SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEE-CTTEEEEEEEEEECHHH
T ss_pred eecccc--C-ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEE-CCCCEEEEEEEEEcCcc
Confidence 333322 1 4788999999999854 677777764 6788888887654 55 46999999999998620
Q ss_pred c----ccCCCCCCeeEEEEEEEEeeCCceE-EEeEEEEEEcC
Q 037455 713 S----AVSPKSNFLGNFGYLTWYDVNGKHL-VRSPIVSAFAN 749 (755)
Q Consensus 713 ~----~~~~~~~~~~~~G~~~~~~~~~~~~-v~~P~~~~~~~ 749 (755)
. +.++++. ++||+|+|++.++.|. ||+||++...+
T Consensus 568 ~~~~~~~~~~~~--~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 568 SKDLLAQMKNGY--FLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp HHHHHHHSTTCE--EEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred chhhcccccCCc--EEEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 0 0024555 8999999954467665 99999998864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-62 Score=552.64 Aligned_cols=367 Identities=28% Similarity=0.441 Sum_probs=291.4
Q ss_pred CCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHh-----------h
Q 037455 29 DRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQL-----------Q 97 (755)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L-----------~ 97 (755)
++.+|||+|+++.. .+...+++++. +.+++++|. .|+||+++++++++++| +
T Consensus 34 ~~~~~iV~~~~~~~-------~~~~~~~~~~~---------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~ 96 (539)
T 3afg_A 34 QEVSTIIMFDNQAD-------KEKAVEILDFL---------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNA 96 (539)
T ss_dssp CEEEEEEEESSHHH-------HHHHHHHHHHH---------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CC
T ss_pred CceEEEEEECCCCC-------HHHHHHHHHhc---------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccc
Confidence 45679999997542 12223334433 468999997 79999999999999999 8
Q ss_pred cCCCeEEEEeceeeccccccC--CccccccccCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceecc
Q 037455 98 KMPGHHATYLESFGHLHTTRT--PQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVG 175 (755)
Q Consensus 98 ~~~~V~~v~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g 175 (755)
++|+|++|++++.+++..... ...+...++..+|..+++|+||+|||||||||++||+|.+
T Consensus 97 ~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~----------------- 159 (539)
T 3afg_A 97 QLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG----------------- 159 (539)
T ss_dssp CCTTEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT-----------------
T ss_pred cCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC-----------------
Confidence 899999999999988743221 1112223356789999999999999999999999999964
Q ss_pred ccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEE
Q 037455 176 VEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIA 255 (755)
Q Consensus 176 ~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~ 255 (755)
++++.++|..+. .++.|++||||||||||||+..+. .|.+.||||+|+|+
T Consensus 160 ----------~i~~~~d~~~~~-------------~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~ 209 (539)
T 3afg_A 160 ----------KVIGWVDFVNGK-------------TTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLV 209 (539)
T ss_dssp ----------TEEEEEETTTCC-------------SSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEE
T ss_pred ----------CEeeeEECCCCC-------------CCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEE
Confidence 355666665431 236788999999999999975331 23358999999999
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-
Q 037455 256 MYKVLFSNDNLAAAETDVLAGMDQAIAD----GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY- 330 (755)
Q Consensus 256 ~~kv~~~~g~~~~~~~~i~~ai~~a~~~----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~- 330 (755)
.+|++++.+. ++.+++++||+||+++ |++|||||||........+++..+++++.++|++||+||||+|+...
T Consensus 210 ~~kv~~~~g~--~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~ 287 (539)
T 3afg_A 210 GIKVLNGQGS--GSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYT 287 (539)
T ss_dssp EEECSCTTSE--EEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSC
T ss_pred EEEeecCCCC--cCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCc
Confidence 9999988765 6789999999999975 99999999998765455688999999999999999999999997543
Q ss_pred -ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEE
Q 037455 331 -SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIF 409 (755)
Q Consensus 331 -~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 409 (755)
..++..+++|+|||.+.
T Consensus 288 ~~~Pa~~~~vitVgA~~~-------------------------------------------------------------- 305 (539)
T 3afg_A 288 VGSPAAASKVITVGAVDK-------------------------------------------------------------- 305 (539)
T ss_dssp CCTTTTCSSSEEEEEECT--------------------------------------------------------------
T ss_pred ccCCccCCceEEEeeecC--------------------------------------------------------------
Confidence 45677899999997321
Q ss_pred EeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCc
Q 037455 410 CAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTK 489 (755)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 489 (755)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC
Q 037455 490 PAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD 569 (755)
Q Consensus 490 ~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 569 (755)
.+.++.||||||+.+ +++||||+|||++|+++++...... +.....|..++|||||||||||++|||+|++|+
T Consensus 306 -~~~~a~fSs~Gp~~~--~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 378 (539)
T 3afg_A 306 -YDVITDFSSRGPTAD--NRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMATPHVAGIAALLLQAHPS 378 (539)
T ss_dssp -TSCBCSSSCCCCCTT--CBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred -CcccccccCCCCCCC--CCCcccEecCcCCEEeeccCCCCCC----CCCcccccccCchHHHHHHHHHHHHHHHHHCCC
Confidence 136789999999985 8999999999999999987542110 111136999999999999999999999999999
Q ss_pred CCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCCCC
Q 037455 570 WSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 570 ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 621 (755)
|++++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 379 ~s~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 379 WTPDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp CCHHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTGG
T ss_pred CCHHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhhc
Confidence 999999999999999875321 24568999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-59 Score=515.01 Aligned_cols=343 Identities=29% Similarity=0.438 Sum_probs=277.0
Q ss_pred CCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEece
Q 037455 30 RKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLES 109 (755)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~~ 109 (755)
+.+|||+|+++... . +++++. +.+++++|. .+++|+++++++++++|+++|+|++|++++
T Consensus 2 ~~~~iV~~~~~~~~------~----~~~~~~---------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~ 61 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN------P----HEVLGI---------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDH 61 (395)
T ss_dssp EEEEEEEECTTTCC------H----HHHHHT---------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECC
T ss_pred cEEEEEEECCCccH------H----HHHHHc---------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEee
Confidence 46899999987421 1 233333 478999998 699999999999999999999999999999
Q ss_pred eeccccccC-----------Cccccccc--cCCCCcCCCCCCc--cEEEEEcccccCCCCCCcCCCCCCCCcccccceec
Q 037455 110 FGHLHTTRT-----------PQFLGLKK--HAGVWPAAGFGSD--IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEV 174 (755)
Q Consensus 110 ~~~~~~~~~-----------~~~~g~~~--~~~~~~~~~~G~G--v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~ 174 (755)
.+++..... ...|++.. +..+|..+ +|+| |+|||||||||++||+|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~--------------- 125 (395)
T 2z2z_A 62 QAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------- 125 (395)
T ss_dssp EEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG---------------
T ss_pred eecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc---------------
Confidence 887643221 12344433 35689988 9999 99999999999999999742
Q ss_pred cccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeE
Q 037455 175 GVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARI 254 (755)
Q Consensus 175 g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l 254 (755)
+...++|..+... ....++.|++||||||||||+|.. ++ .| +.||||+|+|
T Consensus 126 ------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l 176 (395)
T 2z2z_A 126 ------------IAWCVSTLRGKVS--------TKLRDCADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQI 176 (395)
T ss_dssp ------------EEEEEECGGGCCB--------CCHHHHBCSSSHHHHHHHHHHCCC-SS---SS-----CCCSSTTCEE
T ss_pred ------------cccCccccCCccc--------CCCCCCCCCCCCHHHHHHHHHeec-CC---Cc-----eEEECCCCEE
Confidence 3344444433100 000124578999999999999973 21 12 4899999999
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHHhC--------------------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhC
Q 037455 255 AMYKVLFSNDNLAAAETDVLAGMDQAIAD--------------------GVDIMSLSLAFPETTFDENPIAIGAFAALKR 314 (755)
Q Consensus 255 ~~~kv~~~~g~~~~~~~~i~~ai~~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~ 314 (755)
+.+|++++.+. ++.+++++||+||+++ +++|||||||... ....+..++.++.++
T Consensus 177 ~~~kv~~~~g~--~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~ 251 (395)
T 2z2z_A 177 YSVRVLDARGS--GSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 251 (395)
T ss_dssp EEEECSCTTSE--EEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHT
T ss_pred EEEEEecCCCC--ccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHHHHHHHHC
Confidence 99999988775 6788999999999988 9999999999853 245678888899999
Q ss_pred CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccC
Q 037455 315 GIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICE 394 (755)
Q Consensus 315 Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 394 (755)
|+++|+||||+|.....+++..+++|+|||.+
T Consensus 252 gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------------------------------------------ 283 (395)
T 2z2z_A 252 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAID------------------------------------------------ 283 (395)
T ss_dssp TCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC------------------------------------------------
T ss_pred CCEEEEECCCCCCCCCCCccCCCCEEEEEEec------------------------------------------------
Confidence 99999999999988778888899999999832
Q ss_pred CCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCC
Q 037455 395 PNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGN 474 (755)
Q Consensus 395 ~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 474 (755)
T Consensus 284 -------------------------------------------------------------------------------- 283 (395)
T 2z2z_A 284 -------------------------------------------------------------------------------- 283 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhh
Q 037455 475 ATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCP 554 (755)
Q Consensus 475 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 554 (755)
..+.++.||+||| +|+|||++|+++++.+ .|..++|||||||
T Consensus 284 ---------------~~~~~a~fS~~G~----------~v~APG~~i~s~~~~~-------------~y~~~sGTS~AaP 325 (395)
T 2z2z_A 284 ---------------SNDNIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATP 325 (395)
T ss_dssp ---------------TTSCBCTTSCSSC----------SEEEECSSEEEEETTT-------------EEEEEESHHHHHH
T ss_pred ---------------CCCCCCcccCCCC----------CEEeCCCCeeeecCCC-------------ceEecCCHHHHHH
Confidence 1246789999997 5799999999999864 8999999999999
Q ss_pred HHHHHHHHHHhhCC-------------CCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCCC
Q 037455 555 HAAAIAALVKATHR-------------DWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 555 ~VAG~aALl~q~~p-------------~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
||||++|||+|++| .|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 326 ~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~------------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 326 HVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT------------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS------------SSBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC------------CCCCCccCceeCHHHHHHH
Confidence 99999999999999 999999999999999987422 2356899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-56 Score=508.10 Aligned_cols=356 Identities=19% Similarity=0.239 Sum_probs=274.8
Q ss_pred CCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhc-CCCeEEEEe
Q 037455 29 DRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQK-MPGHHATYL 107 (755)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~-~~~V~~v~~ 107 (755)
+++.|||++++.. .+.+.+++. +.+++++|. .+++|+++++++++++|++ +|+|++|++
T Consensus 43 ~~~~yiv~~~~~~----------~~~~~~~~~---------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~ 102 (471)
T 3t41_A 43 EELYYSVEYKNTA----------TFNKLVKKK---------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINA 102 (471)
T ss_dssp CCEEEEEEESCHH----------HHHHHHHHH---------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEE
T ss_pred CceEEEEEcCCHH----------HHHHHHHhC---------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEe
Confidence 3468999877532 233344444 467888986 6999999999999999999 999999999
Q ss_pred ceeeccccccCC----------cccccccc---CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceec
Q 037455 108 ESFGHLHTTRTP----------QFLGLKKH---AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEV 174 (755)
Q Consensus 108 ~~~~~~~~~~~~----------~~~g~~~~---~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~ 174 (755)
++.+++...... ..|++..+ ..+|+.+.+|+||+|||||||||++||+|.++- |.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~--- 172 (471)
T 3t41_A 103 TCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS--- 172 (471)
T ss_dssp CCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC---
T ss_pred cceeccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC---
Confidence 998877543221 23444332 358999999999999999999999999998641 1110
Q ss_pred cccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeE
Q 037455 175 GVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARI 254 (755)
Q Consensus 175 g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l 254 (755)
..++....|.... .+...+...+.|+.||||||||||+|++. +.||||+|+|
T Consensus 173 ----------~~~~~~~~~~~~~------~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l 224 (471)
T 3t41_A 173 ----------KNLVPLNGFRGTE------PEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKF 224 (471)
T ss_dssp ----------EECCCTTCGGGCC------TTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCE
T ss_pred ----------cccccCCCccCCC------cccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeE
Confidence 0111111111111 11112223467899999999999998631 4899999999
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCC-CC------------CCCCHHHHHHHHHHhCCcEEEEe
Q 037455 255 AMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE-TT------------FDENPIAIGAFAALKRGIFVACS 321 (755)
Q Consensus 255 ~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~-~~------------~~~~~~~~a~~~a~~~Gi~vV~A 321 (755)
+.+|++++.. +..+++++||+||+++|++|||||||... .. ...+.+..++..+.++|++||+|
T Consensus 225 ~~~kv~~~~~---~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~A 301 (471)
T 3t41_A 225 TMYRVFGSKK---TELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAA 301 (471)
T ss_dssp EEEECCSSSC---CCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeccCCC---CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEE
Confidence 9999998755 78999999999999999999999999732 11 11245778888899999999999
Q ss_pred cCCCCCCCC------------------ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEe
Q 037455 322 AGNSGPRPY------------------SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYF 383 (755)
Q Consensus 322 AGN~g~~~~------------------~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 383 (755)
|||+|.... ..++..+++|+|||++
T Consensus 302 AGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~------------------------------------- 344 (471)
T 3t41_A 302 AGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTD------------------------------------- 344 (471)
T ss_dssp CCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEEC-------------------------------------
T ss_pred cCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeC-------------------------------------
Confidence 999997653 2567788899998732
Q ss_pred ccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchH
Q 037455 384 GYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGE 463 (755)
Q Consensus 384 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~ 463 (755)
T Consensus 345 -------------------------------------------------------------------------------- 344 (471)
T 3t41_A 345 -------------------------------------------------------------------------------- 344 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCc----------------------E
Q 037455 464 LVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVD----------------------I 521 (755)
Q Consensus 464 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~----------------------I 521 (755)
..+.++.||++||+. |||+|||++ |
T Consensus 345 --------------------------~~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i 391 (471)
T 3t41_A 345 --------------------------QKSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENI 391 (471)
T ss_dssp --------------------------TTSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSE
T ss_pred --------------------------CCCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCcee
Confidence 123678999999964 499999987 8
Q ss_pred EeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHccccccccCCcccccCCCCC
Q 037455 522 LAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR-DWSSAAIRSALMTTADVLDNAYGMITDKSTGV 600 (755)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 600 (755)
+++++.+ .|..++|||||||||||++|||+|++| .++|.+||++|++||++...
T Consensus 392 ~s~~~~~-------------~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------ 446 (471)
T 3t41_A 392 LTTANNG-------------RYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------ 446 (471)
T ss_dssp EEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------
T ss_pred EecCCCC-------------CEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------
Confidence 9998764 899999999999999999999999999 89999999999999997532
Q ss_pred CCCCCcccccccCcCccCCCC
Q 037455 601 AGTPLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 601 ~~~~~~~G~G~in~~~Av~~~ 621 (755)
.++..||||+||+.+|++..
T Consensus 447 -~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 447 -KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp -CCHHHHTTCBBCHHHHTTTT
T ss_pred -CCcCccccChhCHHHHHHHH
Confidence 34569999999999999853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=527.10 Aligned_cols=367 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred CeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEecee
Q 037455 31 KTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESF 110 (755)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~~~ 110 (755)
++|||+||++........+.+++...+.+... ..++++.|+++|+||+++++++++++|+++|+|++|+|++.
T Consensus 76 g~YIV~lk~~~~~~~~~~~~~~l~a~~~~~g~-------~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~ 148 (692)
T 2p4e_P 76 GTYVVVLKEETHLSQSERTARRLQAQAARRGY-------LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 148 (692)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC-------CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHHhhccc-------ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccc
Confidence 48999999987654333444445444433322 36899999999999999999999999999999999999998
Q ss_pred eccccccCCcccccccc------CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccC
Q 037455 111 GHLHTTRTPQFLGLKKH------AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCN 184 (755)
Q Consensus 111 ~~~~~~~~~~~~g~~~~------~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n 184 (755)
++.+. ..|++.++ ...|..+.+|+||+|||||||||++||+|.++.. |. +|
T Consensus 149 v~~~~----~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~------ 205 (692)
T 2p4e_P 149 VFAQS----IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DF------ 205 (692)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred cccCC----CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------cc------
Confidence 76521 12454432 2367788899999999999999999999986410 00 01
Q ss_pred ceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCC
Q 037455 185 RKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND 264 (755)
Q Consensus 185 ~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g 264 (755)
++..+. ++ .....++.|++||||||||||+|+. .||||+|+|+.+||+++.+
T Consensus 206 -------~~~~d~---dg----~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G 257 (692)
T 2p4e_P 206 -------ENVPEE---DG----TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQG 257 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------ccccCC---CC----CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCC
Confidence 000000 00 0001236689999999999999873 7999999999999999877
Q ss_pred CCCCChhHHHHHHHHHHhC------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCC
Q 037455 265 NLAAAETDVLAGMDQAIAD------GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAP 337 (755)
Q Consensus 265 ~~~~~~~~i~~ai~~a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p 337 (755)
. ++.+++++||+|++++ +++|||||||+.. ...+..++.++.++|++||+||||+|.+.. ..++..+
T Consensus 258 ~--g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~ 331 (692)
T 2p4e_P 258 K--GTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAP 331 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--CCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCC
Confidence 5 7888999999999986 8999999999753 345666777888999999999999997654 3477889
Q ss_pred ceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCc
Q 037455 338 WITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGN 417 (755)
Q Consensus 338 ~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 417 (755)
++|+|||++.+...
T Consensus 332 ~vItVGA~d~~~~~------------------------------------------------------------------ 345 (692)
T 2p4e_P 332 EVITVGATNAQDQP------------------------------------------------------------------ 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEcCCCCc------------------------------------------------------------------
Confidence 99999985421100
Q ss_pred hhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccc
Q 037455 418 VTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANF 497 (755)
Q Consensus 418 ~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 497 (755)
...-+.|
T Consensus 346 -------------------------------------------------------------------------a~~ss~f 352 (692)
T 2p4e_P 346 -------------------------------------------------------------------------VTLGTLG 352 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 0001238
Q ss_pred cCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 037455 498 SSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRS 577 (755)
Q Consensus 498 Ss~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 577 (755)
|+||| ||||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|+|||+
T Consensus 353 Sn~G~--------~vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~ 413 (692)
T 2p4e_P 353 TNFGR--------CVDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQ 413 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCC--------ceeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 99997 4599999999999988642 2799999999999999999999999999999999999
Q ss_pred HHHccccccccCCcccc------cCC--CCCCCCCCcccccc--cCcCccCC
Q 037455 578 ALMTTADVLDNAYGMIT------DKS--TGVAGTPLDFGAGH--INPNKAMD 619 (755)
Q Consensus 578 ~L~~TA~~~~~~g~~~~------~~~--~~~~~~~~~~G~G~--in~~~Av~ 619 (755)
+|++||.+....+.++. .+. ...+.....+|+|+ .|+..+..
T Consensus 414 ~L~~tA~~~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 414 RLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHhccccccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 99999976432211110 000 01111345688998 77777653
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-54 Score=495.66 Aligned_cols=368 Identities=21% Similarity=0.222 Sum_probs=268.1
Q ss_pred CCCCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCH----HHHHHhh--cCC
Q 037455 27 SGDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSK----NQLEQLQ--KMP 100 (755)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~----~~~~~L~--~~~ 100 (755)
...+++|||+||+.. . .+++++.. +.++.+++. .+++++++++. +.+++|+ ++|
T Consensus 28 ~~~~~~~IV~~k~~~------~----~~~~~~~~---------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (671)
T 1r6v_A 28 EYTEGKILVGYNDRS------E----VDKIVKAV---------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALK 87 (671)
T ss_dssp SBCTTEEEEEESSHH------H----HHHHHHHH---------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCS
T ss_pred ccCCccEEEEECCCc------C----HHHHHHhc---------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCC
Confidence 346799999999743 1 12223332 357788887 78999999864 3456676 479
Q ss_pred CeEEEEeceeecccccc---------------------------CCccccccc--cCCC-CcCCCCCCccEEEEEccccc
Q 037455 101 GHHATYLESFGHLHTTR---------------------------TPQFLGLKK--HAGV-WPAAGFGSDIIVGILDTGIW 150 (755)
Q Consensus 101 ~V~~v~~~~~~~~~~~~---------------------------~~~~~g~~~--~~~~-~~~~~~G~Gv~VgVIDtGid 150 (755)
+|++|||+..+++.... ....|++.. +..+ |+. .+|+||+|||||||||
T Consensus 88 ~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd 166 (671)
T 1r6v_A 88 GIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVD 166 (671)
T ss_dssp SEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCB
T ss_pred CceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCC
Confidence 99999999876543100 012244433 2345 877 8999999999999999
Q ss_pred CCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccC
Q 037455 151 PESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGS 230 (755)
Q Consensus 151 ~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 230 (755)
++||+|.++ ++..+++..+... ....+..|.+||||||||||||.
T Consensus 167 ~~HpdL~~~---------------------------~~~g~~~~~~~~~--------p~~~d~~d~~gHGThVAGiIAa~ 211 (671)
T 1r6v_A 167 GTHPDLEGQ---------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAK 211 (671)
T ss_dssp TTSGGGTTT---------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCC
T ss_pred CCCcccccc---------------------------EEecccccCCCcC--------CCCCCCccCCCcchhhhhhhhcc
Confidence 999999753 1111111111000 00112456789999999999997
Q ss_pred CCCCCcccccCCceeeeecCCCeEEEEEEeec----CCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCHHHH
Q 037455 231 RVQDVDHFGYAKGTAIGVAPMARIAMYKVLFS----NDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAI 306 (755)
Q Consensus 231 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~----~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~ 306 (755)
. ++ .| +.||||+|+|+.+|++++ .+......+.+++||+||+++|++|||||||... ....+..
T Consensus 212 ~-ng---~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~ 279 (671)
T 1r6v_A 212 K-DG---KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKE 279 (671)
T ss_dssp C-SS---SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHH
T ss_pred C-CC---Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHH
Confidence 3 21 12 489999999999999976 1211134567899999999999999999999853 3457888
Q ss_pred HHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEecc
Q 037455 307 GAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGY 385 (755)
Q Consensus 307 a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~ 385 (755)
++.++.++|+++|+||||+|... ..+++..+++|+|||.+.+.
T Consensus 280 Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g------------------------------------ 323 (671)
T 1r6v_A 280 AFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------------ 323 (671)
T ss_dssp HHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------------------
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCC------------------------------------
Confidence 88899999999999999999765 56778889999999843110
Q ss_pred CCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHH
Q 037455 386 GNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELV 465 (755)
Q Consensus 386 ~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l 465 (755)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCC-----CCCCCcc
Q 037455 466 KKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQP-----IRDDYLL 540 (755)
Q Consensus 466 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~ 540 (755)
....++.|||+||.. ||+|||++|+++++......- .......
T Consensus 324 ------------------------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~ 371 (671)
T 1r6v_A 324 ------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp ------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred ------------------------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCC
Confidence 001468999999975 999999999999886421100 0001112
Q ss_pred cceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCCC
Q 037455 541 TDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 541 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
..|..++|||||||||||++|||+|++|++++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 372 ~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~------------g~d~~~G~G~vna~~Al~~ 439 (671)
T 1r6v_A 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN------------GWDHDTGYGLVKLDAALQG 439 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS------------SCBTTTBTCBCCHHHHHHC
T ss_pred CceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC------------CCCCCcccceeCHHHHhhh
Confidence 4799999999999999999999999999999999999999999987432 2346899999999999975
Q ss_pred Ce
Q 037455 621 GL 622 (755)
Q Consensus 621 ~l 622 (755)
.+
T Consensus 440 ~l 441 (671)
T 1r6v_A 440 PL 441 (671)
T ss_dssp CC
T ss_pred hc
Confidence 44
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=467.60 Aligned_cols=364 Identities=23% Similarity=0.300 Sum_probs=264.0
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+.+ |+||+|||||||||++||+|.++ ++..+++...
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~---------------------------~~~~~~~~~~---------- 53 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT---------- 53 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS----------
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC---------------------------cccCcccCCC----------
Confidence 35688765 77999999999999999999753 1111222111
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCC--eEEEEEEeecCCCCCCChhHHHHHHHHHHhC-
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMA--RIAMYKVLFSNDNLAAAETDVLAGMDQAIAD- 283 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~- 283 (755)
.+..++.|+.||||||||||+|...+ .| +.||||+| +|+.+|++++.+. ++.+++++||+||+++
T Consensus 54 -~~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~--~~~~~~~~ai~~a~~~~ 121 (441)
T 1y9z_A 54 -GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGW--GYSSSLVAAIDTCVNSG 121 (441)
T ss_dssp -CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEE--CCSSCHHHHHHHHHHTT
T ss_pred -CCCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHHhc
Confidence 11224678899999999999997521 12 48999995 9999999988765 6788999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeE----------
Q 037455 284 GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAA---------- 353 (755)
Q Consensus 284 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~---------- 353 (755)
|++|||||||.... ...+..++.++.++|++||+||||+|.....+++..+++|+|||.+.+.....
T Consensus 122 g~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv 198 (441)
T 1y9z_A 122 GANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI 198 (441)
T ss_dssp CCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEE
T ss_pred CCcEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEE
Confidence 99999999998632 34677788899999999999999999887788889999999999876643211
Q ss_pred ---------EEEeCCceE---EEeeeeccC-CCCCC-ceee--EEeccC------CCCCcccCCC--CCCCccccceEEE
Q 037455 354 ---------HVTLGNEEL---TVIGKSVYP-ENLFV-SREP--IYFGYG------NRSKEICEPN--STDSKAVAGKYIF 409 (755)
Q Consensus 354 ---------~~~~~~g~~---~~~g~~~~~-~~~~~-~~~~--~~~~~~------~~~~~~c~~~--~~~~~~~~gkivl 409 (755)
....+++.. ++.|.+++. ..++. ..++ +.|... ......|... .++..+++|||++
T Consensus 199 ~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl 278 (441)
T 1y9z_A 199 SGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICL 278 (441)
T ss_dssp EEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEE
T ss_pred EeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEE
Confidence 111112210 133333332 10000 0000 011100 0113457543 4567899999999
Q ss_pred EeecCC-----CchhHHHHHHHHHHcCceEEEEecCC---CCc-----CCCCCccccEEEEeccchHHHHHHHHhcCCcE
Q 037455 410 CAFDYN-----GNVTVYQQLEEVRKSGAAGAIFSADS---RQH-----LSPEVFNMPFVAVNLKDGELVKKYIINVGNAT 476 (755)
Q Consensus 410 ~~~g~~-----~~~~~~~~~~~~~~~ga~g~i~~n~~---g~~-----~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 476 (755)
|.|+.| .+. +|..+++++|+.++|++|+. +.. .......+|.+.++..+|+.|+.++.+.
T Consensus 279 ~~rg~~~~~~~~~~---~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~---- 351 (441)
T 1y9z_A 279 VERVGNQGSSYPEI---NSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS---- 351 (441)
T ss_dssp EECCSCSSSSCTHH---HHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----
T ss_pred EeccccCcccccHH---HHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----
Confidence 999876 444 89999999999999999882 211 1223568999999999999998765321
Q ss_pred EEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHH
Q 037455 477 VSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHA 556 (755)
Q Consensus 477 ~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 556 (755)
+ .+ ++... ..|..+||||||||||
T Consensus 352 ~-----------------------------------t~--------~~~~~-------------~~y~~~sGTSmAaP~V 375 (441)
T 1y9z_A 352 T-----------------------------------TV--------SNQGN-------------QDYEYYNGTSMATPHV 375 (441)
T ss_dssp E-----------------------------------EE--------EEEEE-------------ESEEEECSHHHHHHHH
T ss_pred c-----------------------------------cc--------ccccC-------------CCceeecccccCCccc
Confidence 1 11 11111 3899999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCC
Q 037455 557 AAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 557 AG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
||++|||+|+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|++
T Consensus 376 AG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~~ 426 (441)
T 1y9z_A 376 SGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAKA 426 (441)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHHH
T ss_pred chHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHHH
Confidence 9999999999999999999999999999875432 34589999999999986
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-52 Score=434.42 Aligned_cols=265 Identities=28% Similarity=0.408 Sum_probs=215.0
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|++.. +..+|+.+..|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 13 w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~~-- 63 (280)
T 1dbi_A 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDND-- 63 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTTB--
T ss_pred CChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCCC--
Confidence 55544 346899988888999999999999999999742 44455554431
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
.++.|..+|||||||||+|...+.. | +.||||+|+|+.+|+++..+. ++.+++++||+|
T Consensus 64 -----------~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g~--~~~~~i~~ai~~ 122 (280)
T 1dbi_A 64 -----------YDPMDLNNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNGS--GTLSDIADAIIY 122 (280)
T ss_dssp -----------SCCCCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTSC--CCHHHHHHHHHH
T ss_pred -----------CCCCCCCCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCCC--cCHHHHHHHHHH
Confidence 2356889999999999999754321 2 489999999999999988775 788999999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCC
Q 037455 280 AIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 280 a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
|+++|++|||||||... ....+..++.++.++|+++|+||||+|......++..+++|+|||.+
T Consensus 123 a~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------- 186 (280)
T 1dbi_A 123 AADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD------------- 186 (280)
T ss_dssp HHHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC-------------
T ss_pred HHHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC-------------
Confidence 99999999999999853 34578888889999999999999999987777888899999999832
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T 1dbi_A 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
..+.++.||++||.. ||+|||+
T Consensus 187 --------------------------------------------------~~~~~~~~S~~G~~~--------dv~ApG~ 208 (280)
T 1dbi_A 187 --------------------------------------------------QYDRLASFSNYGTWV--------DVVAPGV 208 (280)
T ss_dssp --------------------------------------------------TTSCBCTTBCCSTTC--------CEEEECS
T ss_pred --------------------------------------------------CCCCcCCCCCCCCCc--------eEEEecC
Confidence 123578899999854 9999999
Q ss_pred cEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCC
Q 037455 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599 (755)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 599 (755)
+|+++++.+ .|..++|||||||||||++|||++ |.+++.|||++|++||+++...
T Consensus 209 ~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~---------- 263 (280)
T 1dbi_A 209 DIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT---------- 263 (280)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB----------
T ss_pred CeEeecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC----------
Confidence 999998764 899999999999999999999987 8999999999999999987421
Q ss_pred CCCCCCcccccccCcCccCC
Q 037455 600 VAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 600 ~~~~~~~~G~G~in~~~Av~ 619 (755)
...||+|+||+.+|++
T Consensus 264 ----~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 264 ----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp ----TTTBSSEECCHHHHHT
T ss_pred ----CCcccCCEECHHHHhc
Confidence 2479999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=431.11 Aligned_cols=262 Identities=34% Similarity=0.505 Sum_probs=220.2
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|++.. +..+|..+++|+||+|+|||||| .+||+|+ +...++|..+.
T Consensus 6 W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~~-- 53 (269)
T 1gci_A 6 WGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPGE-- 53 (269)
T ss_dssp HHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTTC--
T ss_pred cChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCCC--
Confidence 44443 34689999999999999999999 8999994 22333443321
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
.++.|..||||||||||+|... + .| +.||||+|+|+.+|+++..+. +..+++++||+|
T Consensus 54 -----------~~~~d~~gHGT~vAgiia~~~~-~---~~-----~~GvAp~a~l~~~~v~~~~g~--~~~~~~~~ai~~ 111 (269)
T 1gci_A 54 -----------PSTQDGNGHGTHVAGTIAALNN-S---IG-----VLGVAPSAELYAVKVLGASGS--GSVSSIAQGLEW 111 (269)
T ss_dssp -----------CSCSCSSSHHHHHHHHHHCCCS-S---SB-----CCCSSTTCEEEEEECBCTTSC--BCHHHHHHHHHH
T ss_pred -----------CCCCCCCCChHHHHHHHhcCcC-C---CC-----cEEeCCCCEEEEEEeECCCCC--cCHHHHHHHHHH
Confidence 1256789999999999999731 1 12 489999999999999988765 678899999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCC
Q 037455 280 AIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 280 a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
+++++++|||||||... ....+..+++++.++|+++|+||||+|.....++...+++|+||+.+
T Consensus 112 a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------- 175 (269)
T 1gci_A 112 AGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD------------- 175 (269)
T ss_dssp HHHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC-------------
T ss_pred HHHCCCeEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeec-------------
Confidence 99999999999999863 24578888889999999999999999988778888899999999832
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T 1gci_A 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
..+.++.||++||.+ ||+|||+
T Consensus 176 --------------------------------------------------~~~~~~~~S~~G~~~--------di~APG~ 197 (269)
T 1gci_A 176 --------------------------------------------------QNNNRASFSQYGAGL--------DIVAPGV 197 (269)
T ss_dssp --------------------------------------------------TTSCBCTTCCCSTTE--------EEEEECS
T ss_pred --------------------------------------------------CCCCCCCCCCCCCCc--------ceEecCC
Confidence 113568899999864 9999999
Q ss_pred cEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCC
Q 037455 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599 (755)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 599 (755)
+|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 198 ~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g------------ 252 (269)
T 1gci_A 198 NVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------------ 252 (269)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS------------
T ss_pred CeEeecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC------------
Confidence 999998764 8999999999999999999999999999999999999999999763
Q ss_pred CCCCCCcccccccCcCccCC
Q 037455 600 VAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 600 ~~~~~~~~G~G~in~~~Av~ 619 (755)
++..||+|+||+.+|++
T Consensus 253 ---~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 ---STNLYGSGLVNAEAATR 269 (269)
T ss_dssp ---CHHHHTTCBCCHHHHTC
T ss_pred ---CCCCcccCccCHHHHcC
Confidence 23589999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-52 Score=434.20 Aligned_cols=263 Identities=30% Similarity=0.465 Sum_probs=218.3
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|++.. +..+|+.+++|+||+|||||||||++||+|+ +...++|..+.
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~-- 54 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE-- 54 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC--
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCCC--
Confidence 44433 3468999999999999999999999999994 22333443321
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
..+.|..||||||||||+|.... ..+.||||+|+|+.+|+++..+. +..++++++|+|
T Consensus 55 -----------~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~--~~~~~i~~ai~~ 112 (274)
T 1r0r_E 55 -----------AYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGS--GSYSGIVSGIEW 112 (274)
T ss_dssp -----------CTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHH
T ss_pred -----------CCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCC--ccHHHHHHHHHH
Confidence 12457899999999999997311 12489999999999999987765 678899999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEeccccccceeeEEE
Q 037455 280 AIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP----YSIRNGAPWITAVGAGTVDREFAAHV 355 (755)
Q Consensus 280 a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~ 355 (755)
+++++++|||||||... ..+.+..+++++.++|+++|+||||+|... ..++...+++|+||+.+
T Consensus 113 a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------- 180 (274)
T 1r0r_E 113 ATTNGMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD--------- 180 (274)
T ss_dssp HHHTTCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC---------
T ss_pred HHHcCCCEEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec---------
Confidence 99999999999999864 246788888899999999999999999763 35567788999999732
Q ss_pred EeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 037455 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435 (755)
Q Consensus 356 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~ 435 (755)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeE
Q 037455 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515 (755)
Q Consensus 436 i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~ 515 (755)
..+.++.||++||. |||+
T Consensus 181 ------------------------------------------------------~~~~~~~~S~~G~~--------~di~ 198 (274)
T 1r0r_E 181 ------------------------------------------------------SNSNRASFSSVGAE--------LEVM 198 (274)
T ss_dssp ------------------------------------------------------TTSCBCTTCCCSTT--------EEEE
T ss_pred ------------------------------------------------------CCCCcCccCCCCCC--------ceEE
Confidence 12356889999985 4999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCccccc
Q 037455 516 APGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITD 595 (755)
Q Consensus 516 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~ 595 (755)
|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 199 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-------- 257 (274)
T 1r0r_E 199 APGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-------- 257 (274)
T ss_dssp EECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------
T ss_pred eCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------
Confidence 9999999998864 8999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCcccccccCcCccCC
Q 037455 596 KSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 596 ~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
++..||+|+||+.+|++
T Consensus 258 -------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 -------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -------CHHHHTTCBCCHHHHTC
T ss_pred -------CCCCcccCccCHHHHhC
Confidence 23589999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=464.06 Aligned_cols=305 Identities=22% Similarity=0.254 Sum_probs=196.9
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCcee----eeeeeccccccccCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKL----IGARSFSKGIRQNGLN 203 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki----~g~~~~~~~~~~~~~~ 203 (755)
..+|+++..|++|+|||||||||++||+|++....+....|+..++........ .+..+ ...+.+.....
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----- 94 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRDQGLKGKEKEEALE----- 94 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHHHTCCSHHHHHHHH-----
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccCccccccccccccc-----
Confidence 468999998999999999999999999999876665666666544322110000 00000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCC---CCCChhHHHHHHHHH
Q 037455 204 ISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDN---LAAAETDVLAGMDQA 280 (755)
Q Consensus 204 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~~~~i~~ai~~a 280 (755)
....+..++.|++||||||||||||+..+ .+.||||+|+|+.+|++..... ......+++++|+|+
T Consensus 95 -~~~~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a 163 (357)
T 4h6x_A 95 -AVIPDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLA 163 (357)
T ss_dssp -HHCTTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHH
T ss_pred -cccCCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHH
Confidence 00011123456789999999999997422 2489999999999999743221 013455788999999
Q ss_pred HhCCCcEEEEccCCCC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCC
Q 037455 281 IADGVDIMSLSLAFPE-TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 281 ~~~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
++.|++|||||||... .....+.+..++.++.++|+++|+||||+|.....+++..+++|+|||++
T Consensus 164 ~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------- 230 (357)
T 4h6x_A 164 LELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK------------- 230 (357)
T ss_dssp HHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC-------------
T ss_pred HHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec-------------
Confidence 9999999999999865 33445678888899999999999999999988888888899999999832
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
..+.++.|||||+. ..||||+|||+
T Consensus 231 --------------------------------------------------~~~~~~~fSn~G~~-----~~~~di~APG~ 255 (357)
T 4h6x_A 231 --------------------------------------------------VDGTPCHFSNWGGN-----NTKEGILAPGE 255 (357)
T ss_dssp --------------------------------------------------TTSSBCTTCC---C-----TTTTEEEEECS
T ss_pred --------------------------------------------------cCCcccccccCCCC-----CCccceeecCC
Confidence 12467899999975 45899999999
Q ss_pred cEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHccccccccCCccccc
Q 037455 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT----HRDWSSAAIRSALMTTADVLDNAYGMITD 595 (755)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~ik~~L~~TA~~~~~~g~~~~~ 595 (755)
+|+++++.+ ..|..++|||||||||||++|||+++ +|.|+++|||++|++||+++...
T Consensus 256 ~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~------ 317 (357)
T 4h6x_A 256 EILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE------ 317 (357)
T ss_dssp SEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------
T ss_pred CeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC------
Confidence 999998765 26778999999999999999999964 56899999999999999987532
Q ss_pred CCCCCCCCCCcccccccCcCccCC
Q 037455 596 KSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 596 ~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
....+.+||+|+||+.+|++
T Consensus 318 ----~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 ----VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp -----------CTTCBCCHHHHHH
T ss_pred ----CCCCcccceeEEecHHHHHH
Confidence 22345689999999999996
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=431.42 Aligned_cols=265 Identities=31% Similarity=0.470 Sum_probs=218.8
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|++.. +..+|..+++|+||+|||||||||++||+|+ +...++|..+.
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~-- 54 (281)
T 1to2_E 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-----------------------------VAGGASMVPSE-- 54 (281)
T ss_dssp HHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECCTTC--
T ss_pred cchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHc-----------------------------CcCCccccCCC--
Confidence 44443 3458999999999999999999999999994 12233333221
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
.....|..||||||||||+|.... ..+.||||+|+|+.+|+++..+. +..++++++|+|
T Consensus 55 ----------~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~--~~~~~i~~ai~~ 113 (281)
T 1to2_E 55 ----------TNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGS--GQYSWIINGIEW 113 (281)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHH
T ss_pred ----------CCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCC--ccHHHHHHHHHH
Confidence 011357899999999999997311 12489999999999999987765 678899999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEeccccccceeeEEE
Q 037455 280 AIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP----YSIRNGAPWITAVGAGTVDREFAAHV 355 (755)
Q Consensus 280 a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~ 355 (755)
+++++++|||||||... ....+..+++++.++|+++|+||||+|... ..++...+++|+||+.+
T Consensus 114 a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------- 181 (281)
T 1to2_E 114 AIANNMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD--------- 181 (281)
T ss_dssp HHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC---------
T ss_pred HHHCCCcEEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec---------
Confidence 99999999999999863 246788888899999999999999999763 35567788999999732
Q ss_pred EeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 037455 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435 (755)
Q Consensus 356 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~ 435 (755)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeE
Q 037455 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515 (755)
Q Consensus 436 i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~ 515 (755)
..+.++.||++||.+ ||+
T Consensus 182 ------------------------------------------------------~~~~~~~fS~~G~~~--------di~ 199 (281)
T 1to2_E 182 ------------------------------------------------------SSNQRASFSSVGPEL--------DVM 199 (281)
T ss_dssp ------------------------------------------------------TTSCBCTTCCCSTTC--------CEE
T ss_pred ------------------------------------------------------CCCCcCCcCCCCCCc--------eEE
Confidence 123568899999854 999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCccccc
Q 037455 516 APGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITD 595 (755)
Q Consensus 516 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~ 595 (755)
|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 200 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-------- 258 (281)
T 1to2_E 200 APGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-------- 258 (281)
T ss_dssp EECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------
T ss_pred ecCCCeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------
Confidence 9999999998764 8999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCcccccccCcCccCCC
Q 037455 596 KSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 596 ~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
+++.||||+||+.+|++.
T Consensus 259 -------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 -------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -------CHHHHTTCBCCHHHHTSS
T ss_pred -------CCCCcccceecHHHHhhh
Confidence 245899999999999975
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-51 Score=427.51 Aligned_cols=258 Identities=28% Similarity=0.418 Sum_probs=218.6
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
..+|+.. +|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 62 (279)
T 1thm_A 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDND---------- 62 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTTB----------
T ss_pred HHHHhcC-CCCCCEEEEEccCCCCCCcchhcC---------------------------ccccccccCCC----------
Confidence 4588876 799999999999999999999742 44455555431
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcE
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDI 287 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dV 287 (755)
.++.|..||||||||||+|...++. | +.||||+|+|+.+|+++..+. ++.+++++||+||+++|++|
T Consensus 63 ---~~~~d~~gHGT~vAgiia~~~~n~~---g-----~~GvAp~a~l~~~~v~~~~g~--~~~~~~~~ai~~a~~~g~~V 129 (279)
T 1thm_A 63 ---STPQNGNGHGTHCAGIAAAVTNNST---G-----IAGTAPKASILAVRVLDNSGS--GTWTAVANGITYAADQGAKV 129 (279)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHTTCSE
T ss_pred ---CCCCCCCCcHHHHHHHHhCccCCCC---c-----cEEeCCCCEEEEEEeeCCCCC--ccHHHHHHHHHHHHHCCCCE
Confidence 2356789999999999999764432 2 389999999999999988775 78889999999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeee
Q 037455 288 MSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367 (755)
Q Consensus 288 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~ 367 (755)
||||||... ..+.+..+++++.++|+++|+||||+|.....++...+++|+||+.+
T Consensus 130 in~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~--------------------- 185 (279)
T 1thm_A 130 ISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD--------------------- 185 (279)
T ss_dssp EEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC---------------------
T ss_pred EEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC---------------------
Confidence 999999863 34578888889999999999999999988778888899999999732
Q ss_pred eccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC
Q 037455 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~ 447 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 1thm_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecC
Q 037455 448 EVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVP 527 (755)
Q Consensus 448 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~ 527 (755)
..+.++.||++||.. ||+|||++|+++++.
T Consensus 186 ------------------------------------------~~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~ 215 (279)
T 1thm_A 186 ------------------------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT 215 (279)
T ss_dssp ------------------------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT
T ss_pred ------------------------------------------CCCCcCCcCCCCCce--------EEEEcCCCeEEEeCC
Confidence 123568899999864 999999999999886
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcc
Q 037455 528 NNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDF 607 (755)
Q Consensus 528 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 607 (755)
+ .|..++|||||||||||++||| ++|.+++.+||++|++||+++...+ ..|
T Consensus 216 ~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~--------------~~~ 266 (279)
T 1thm_A 216 S-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG--------------TYW 266 (279)
T ss_dssp T-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT--------------TTB
T ss_pred C-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC--------------ccc
Confidence 4 8999999999999999999999 5799999999999999999875321 479
Q ss_pred cccccCcCccCC
Q 037455 608 GAGHINPNKAMD 619 (755)
Q Consensus 608 G~G~in~~~Av~ 619 (755)
|+|+||+.+|++
T Consensus 267 G~G~vn~~~A~~ 278 (279)
T 1thm_A 267 AKGRVNAYKAVQ 278 (279)
T ss_dssp SSEECCHHHHHH
T ss_pred cCCeeCHHHHhc
Confidence 999999999974
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-52 Score=443.70 Aligned_cols=271 Identities=26% Similarity=0.421 Sum_probs=218.5
Q ss_pred cccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeecccccc
Q 037455 121 FLGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIR 198 (755)
Q Consensus 121 ~~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 198 (755)
.|++.. +..+|+.+++|+||+|||||||||++||+|.+ ++...++|..++.
T Consensus 22 ~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~ 74 (327)
T 2x8j_A 22 PMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYG 74 (327)
T ss_dssp CHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGG
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCC
Confidence 355543 35689999999999999999999999999974 3455556655431
Q ss_pred ccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHH
Q 037455 199 QNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278 (755)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~ 278 (755)
. +.....|+.||||||||||+|.. ++ ..+.||||+|+|+.+|+++..+. ++.+++++||+
T Consensus 75 ~---------~~~~~~d~~gHGT~VAgiia~~~-~~--------~g~~GvAp~a~l~~~kv~~~~g~--~~~~~i~~ai~ 134 (327)
T 2x8j_A 75 G---------DETNFSDNNGHGTHVAGTVAAAE-TG--------SGVVGVAPKADLFIIKALSGDGS--GEMGWIAKAIR 134 (327)
T ss_dssp G---------CTTCCCCSSSHHHHHHHHHHCCC-CS--------SBCCCSSTTCEEEEEECSCTTSE--ECHHHHHHHHH
T ss_pred C---------CCCCCCCCCCchHHHHHHHhccC-CC--------CCcEeeCCCCEEEEEEeECCCCC--cCHHHHHHHHH
Confidence 1 11235678999999999999973 11 12489999999999999987765 67889999999
Q ss_pred HHHh------CCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-----CccccCCCceEEeccccc
Q 037455 279 QAIA------DGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP-----YSIRNGAPWITAVGAGTV 347 (755)
Q Consensus 279 ~a~~------~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~ 347 (755)
||++ .+++|||||||... ....+..++.++.++|++||+||||+|... ..+|+..+++|+|||++.
T Consensus 135 ~a~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~ 211 (327)
T 2x8j_A 135 YAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF 211 (327)
T ss_dssp HHHHCCCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT
T ss_pred HHHhhcccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC
Confidence 9999 89999999999853 245788888899999999999999999752 356777899999998421
Q ss_pred cceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHH
Q 037455 348 DREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEV 427 (755)
Q Consensus 348 ~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 427 (755)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCC
Q 037455 428 RKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSP 507 (755)
Q Consensus 428 ~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 507 (755)
.+.++.||++||.
T Consensus 212 ---------------------------------------------------------------~~~~~~fS~~G~~---- 224 (327)
T 2x8j_A 212 ---------------------------------------------------------------DLRLSDFTNTNEE---- 224 (327)
T ss_dssp ---------------------------------------------------------------TCCBSCC---CCC----
T ss_pred ---------------------------------------------------------------CCCCCCccCCCCC----
Confidence 2367899999984
Q ss_pred CcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhh-----CCCCCHHHHHHHHHcc
Q 037455 508 WILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT-----HRDWSSAAIRSALMTT 582 (755)
Q Consensus 508 g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~ls~~~ik~~L~~T 582 (755)
|||+|||++|+++++.+ .|..++|||||||||||++|||+|+ +|.+++.+||++|++|
T Consensus 225 ----~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~t 287 (327)
T 2x8j_A 225 ----IDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 287 (327)
T ss_dssp ----CSEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTT
T ss_pred ----ceEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHh
Confidence 49999999999998764 8999999999999999999999999 9999999999999999
Q ss_pred ccccccCCcccccCCCCCCCCCCcccccccCcCccCC
Q 037455 583 ADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 583 A~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
|+++. .++..||+|+||+.+|++
T Consensus 288 A~~~g--------------~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 288 ATPIG--------------FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp EECCS--------------SCHHHHTTCEECTTHHHH
T ss_pred CccCC--------------CCCCceeeeEECHHHHHH
Confidence 99763 134589999999999996
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=432.77 Aligned_cols=266 Identities=23% Similarity=0.270 Sum_probs=210.6
Q ss_pred CCCC-CccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCC
Q 037455 134 AGFG-SDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDS 212 (755)
Q Consensus 134 ~~~G-~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (755)
.++| +||+|||||||||++||+|.++ .+..+++... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~---------------------------~~~~~~~~~~-----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA---------------------------DLTVLPTLAP-----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC---------------------------EEEECCCSSC-----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC---------------------------eeecCcCCCC-----------CCCCC
Confidence 3578 7999999999999999999753 1111111111 01112
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEcc
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL 292 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~Sl 292 (755)
..|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+.+. ..+..+++++|+||++.+++||||||
T Consensus 45 d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~-~~~~~~i~~ai~~a~~~~~~Vin~S~ 113 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRR-RITQLDLARGIERAVNAGAHIINISG 113 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSS-CCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccc-cchHHHHHHHHHHhhccCCeEEeccC
Confidence 234679999999999997532 2489999999999999865432 15677899999999999999999999
Q ss_pred CCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccC
Q 037455 293 AFPET-TFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYP 371 (755)
Q Consensus 293 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~ 371 (755)
|.... ......+..++..+.++|+++|+||||+|......+...+++|+|||.+
T Consensus 114 G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------- 168 (282)
T 3zxy_A 114 GELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD------------------------- 168 (282)
T ss_dssp CEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC-------------------------
T ss_pred ccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc-------------------------
Confidence 97542 2334567788889999999999999999988878888899999999832
Q ss_pred CCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCcc
Q 037455 372 ENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFN 451 (755)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~ 451 (755)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCC
Q 037455 452 MPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPW 531 (755)
Q Consensus 452 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~ 531 (755)
..+.++.||+||+. ..||||+|||++|+++++.+
T Consensus 169 --------------------------------------~~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~--- 202 (282)
T 3zxy_A 169 --------------------------------------DHGHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG--- 202 (282)
T ss_dssp --------------------------------------TTSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS---
T ss_pred --------------------------------------CCCccccccCCCCC-----ccccceeccCcceeeecCCC---
Confidence 12356889999875 46899999999999998875
Q ss_pred CCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC----CCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcc
Q 037455 532 QPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH----RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDF 607 (755)
Q Consensus 532 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 607 (755)
.|..++|||||||||||++|||+|++ |.++|+|||++|++||++++.. .+.....+
T Consensus 203 ----------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~----------~~~~~~~~ 262 (282)
T 3zxy_A 203 ----------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD----------APEQARRC 262 (282)
T ss_dssp ----------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGGG
T ss_pred ----------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC----------CCCccCce
Confidence 89999999999999999999999875 7899999999999999987532 23445689
Q ss_pred cccccCcCccCC
Q 037455 608 GAGHINPNKAMD 619 (755)
Q Consensus 608 G~G~in~~~Av~ 619 (755)
|+|+||+.+|++
T Consensus 263 G~G~ln~~~A~~ 274 (282)
T 3zxy_A 263 LAGRLNVSGAFT 274 (282)
T ss_dssp TTCBCCHHHHHH
T ss_pred eeeEeCHHHHHH
Confidence 999999999985
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=429.44 Aligned_cols=287 Identities=28% Similarity=0.363 Sum_probs=227.0
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|++.. +..+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 8 W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~- 59 (310)
T 2ixt_A 8 WGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT- 59 (310)
T ss_dssp HHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-
T ss_pred CchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC-
Confidence 44443 467999999999999999999999999999753 334445543310
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
.......|..||||||||||+|...++ ...+.||||+|+|+.+|++.+.+. ++.++++++|+|
T Consensus 60 --------~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~--~~~~~~~~ai~~ 122 (310)
T 2ixt_A 60 --------PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGS--GYSDDIAAAIRH 122 (310)
T ss_dssp --------CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSC--CCHHHHHHHHHH
T ss_pred --------CCCCCCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCC--CcHHHHHHHHHH
Confidence 011234678999999999999875221 122489999999999999988775 688899999999
Q ss_pred HHhCCC-----cEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCC--CCccccCCCceEEeccccccceee
Q 037455 280 AIADGV-----DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPR--PYSIRNGAPWITAVGAGTVDREFA 352 (755)
Q Consensus 280 a~~~g~-----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVga~~~~~~~~ 352 (755)
++++++ +|||||||... ....+..++.++.++|++||+||||+|.. ...+++..+++|+||+.+...
T Consensus 123 a~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~--- 196 (310)
T 2ixt_A 123 AADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ--- 196 (310)
T ss_dssp HHHHHHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE---
T ss_pred HHHhhhccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc---
Confidence 999988 99999999863 24567888889999999999999999976 345677889999999843100
Q ss_pred EEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCc
Q 037455 353 AHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGA 432 (755)
Q Consensus 353 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga 432 (755)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCC--ccccccCCCCCCCC----
Q 037455 433 AGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAP--QVANFSSRGPSLRS---- 506 (755)
Q Consensus 433 ~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~---- 506 (755)
..+ .++.||++||....
T Consensus 197 ---------------------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~ 219 (310)
T 2ixt_A 197 ---------------------------------------------------------QNGTYRVADYSSRGYISTAGDYV 219 (310)
T ss_dssp ---------------------------------------------------------ETTEEEECTTSCCCCTTTTTSSS
T ss_pred ---------------------------------------------------------cCCCeeeccccCCCCccCCcccc
Confidence 001 56789999995321
Q ss_pred CCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 037455 507 PWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586 (755)
Q Consensus 507 ~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~ 586 (755)
.++.||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||+++
T Consensus 220 ~~~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 286 (310)
T 2ixt_A 220 IQEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286 (310)
T ss_dssp CCTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTS
T ss_pred ccCCCeeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCccc
Confidence 1245999999999999998764 899999999999999999999999999999999999999999987
Q ss_pred ccCCcccccCCCCCCCCCCcccccccCc
Q 037455 587 DNAYGMITDKSTGVAGTPLDFGAGHINP 614 (755)
Q Consensus 587 ~~~g~~~~~~~~~~~~~~~~~G~G~in~ 614 (755)
+..+. ....+..+..+|||++|+
T Consensus 287 ~~~~~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 287 DIKGG-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp CCCBS-----TTCCSSSBTTTBTCBCCC
T ss_pred CCCCC-----cccccCCccccccceeec
Confidence 64321 113456778999999996
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=435.12 Aligned_cols=272 Identities=32% Similarity=0.482 Sum_probs=221.4
Q ss_pred cccccc--cCCCCcCCCCCC--ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeecccc
Q 037455 121 FLGLKK--HAGVWPAAGFGS--DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196 (755)
Q Consensus 121 ~~g~~~--~~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~ 196 (755)
.|++.. +..+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~ 60 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRG 60 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGG
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCC
Confidence 355443 45689988 999 999999999999999999742 3334444433
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHH
Q 037455 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAG 276 (755)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~a 276 (755)
... ....+..|..||||||||||+|.. ++ .| +.||||+|+|+.+|+++..+. ++.++++++
T Consensus 61 ~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~~v~~~~g~--~~~~~i~~a 121 (320)
T 2z30_A 61 KVS--------TKLRDCADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLDARGS--GSYSDIAIG 121 (320)
T ss_dssp CCB--------CCHHHHBCSSSHHHHHHHHHHCCS-SS---BS-----CCCSSTTCEEEEEECSCTTSE--EEHHHHHHH
T ss_pred ccC--------CCCCCCCCCCCCHHHHHHHHHccc-CC---Cc-----eEeeCCCCEEEEEEeeCCCCC--ccHHHHHHH
Confidence 110 000123578999999999999963 11 12 489999999999999987765 678899999
Q ss_pred HHHHHhC--------------------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCC
Q 037455 277 MDQAIAD--------------------GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGA 336 (755)
Q Consensus 277 i~~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~ 336 (755)
|+||+++ +++|||||||... ....+..++.++.++|++||+||||+|.....+++..
T Consensus 122 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~ 198 (320)
T 2z30_A 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAY 198 (320)
T ss_dssp HHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTS
T ss_pred HHHHHhCcccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccC
Confidence 9999987 9999999999864 2456778888899999999999999998877888889
Q ss_pred CceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCC
Q 037455 337 PWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNG 416 (755)
Q Consensus 337 p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 416 (755)
+++|+|||.+
T Consensus 199 ~~vi~Vga~~---------------------------------------------------------------------- 208 (320)
T 2z30_A 199 PEVIAVGAID---------------------------------------------------------------------- 208 (320)
T ss_dssp TTEEEEEEEC----------------------------------------------------------------------
T ss_pred CCeEEEEeeC----------------------------------------------------------------------
Confidence 9999999832
Q ss_pred chhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCcccc
Q 037455 417 NVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVAN 496 (755)
Q Consensus 417 ~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 496 (755)
..+.++.
T Consensus 209 -------------------------------------------------------------------------~~~~~~~ 215 (320)
T 2z30_A 209 -------------------------------------------------------------------------SNDNIAS 215 (320)
T ss_dssp -------------------------------------------------------------------------TTSCBCT
T ss_pred -------------------------------------------------------------------------CCCCcCc
Confidence 1235688
Q ss_pred ccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC---------
Q 037455 497 FSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH--------- 567 (755)
Q Consensus 497 fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~--------- 567 (755)
||++|| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 216 ~S~~g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~ 272 (320)
T 2z30_A 216 FSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILP 272 (320)
T ss_dssp TSCSSC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCCC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccc
Confidence 999986 6899999999998864 89999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCCC
Q 037455 568 ----RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 568 ----p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
|.|++.+||++|++||+++.. +..+..||||+||+.+|++.
T Consensus 273 ~~~~p~lt~~~v~~~L~~ta~~~~~------------~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 273 VGTFDDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCTTCCSTTSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcCCceeCHHHHHHH
Confidence 999999999999999998742 23356899999999999863
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-51 Score=433.63 Aligned_cols=272 Identities=23% Similarity=0.292 Sum_probs=217.3
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
+++|+....++||+|||||||||++||+|.++ .+.+..+|..+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~---------- 54 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE---------- 54 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC----------
Confidence 46899887779999999999999999999753 222222232221
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcE
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDI 287 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dV 287 (755)
.....|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+.+. .....++++||+||++++++|
T Consensus 55 --~~~~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~-~~~~~~i~~ai~~a~~~g~~v 121 (306)
T 4h6w_A 55 --ANANGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESL-KLSQLDLSRAIEQAVNNGANI 121 (306)
T ss_dssp ------CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSC-CCCHHHHHHHHHHHHHTTCSE
T ss_pred --CCCCCCCCCchHHHHHHHHccccC----------Ccceeccccccceeeccccccc-cchHHHHHHHHHHhhccccee
Confidence 112346789999999999997422 2489999999999999865431 167778999999999999999
Q ss_pred EEEccCCCC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEee
Q 037455 288 MSLSLAFPE-TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIG 366 (755)
Q Consensus 288 In~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g 366 (755)
||+|||... .......+..++..+.++|+++|+||||+|.....++...+++|+|||.+.
T Consensus 122 i~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~------------------- 182 (306)
T 4h6w_A 122 INVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD------------------- 182 (306)
T ss_dssp EEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT-------------------
T ss_pred eeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC-------------------
Confidence 999999754 233445678888899999999999999999887788888899999997321
Q ss_pred eeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC
Q 037455 367 KSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS 446 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~ 446 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
.+.++.||++|+. ..||||+|||++|+++++
T Consensus 183 --------------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~ 213 (306)
T 4h6w_A 183 --------------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAKP 213 (306)
T ss_dssp --------------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEECT
T ss_pred --------------------------------------------CCCccccccccCC-----cCcceeecCCcCcccccC
Confidence 2356789999975 468999999999999988
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHccccccccCCcccccCCCCCCC
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT----HRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 602 (755)
.+ .|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+ ..
T Consensus 214 ~~-------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~----------~~ 270 (306)
T 4h6w_A 214 NG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD----------TD 270 (306)
T ss_dssp TS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT----------CS
T ss_pred CC-------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC----------CC
Confidence 65 8999999999999999999999865 699999999999999999875432 22
Q ss_pred CCCcccccccCcCccCC
Q 037455 603 TPLDFGAGHINPNKAMD 619 (755)
Q Consensus 603 ~~~~~G~G~in~~~Av~ 619 (755)
....||+|+||+.+|++
T Consensus 271 ~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 271 DQSRCLMGKLNILDAIE 287 (306)
T ss_dssp CGGGGTTCBCCHHHHHH
T ss_pred CCCCcceeecCHHHHHH
Confidence 33479999999999996
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-50 Score=436.47 Aligned_cols=271 Identities=17% Similarity=0.130 Sum_probs=217.4
Q ss_pred cCCCCcCCCCCC--ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCC
Q 037455 127 HAGVWPAAGFGS--DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNI 204 (755)
Q Consensus 127 ~~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 204 (755)
+..+|+. .+|+ ||+||||||||| +||+|.++ +...++|..+..
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~------ 76 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS------ 76 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC------
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC------
Confidence 3568887 8999 999999999999 99999742 344455544311
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC-
Q 037455 205 STTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD- 283 (755)
Q Consensus 205 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~- 283 (755)
+.+...+.|..||||||||||+|+ .| +.||||+|+|+.+|++++.+ .. ++++||+||+++
T Consensus 77 --~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~---~~--~~~~ai~~a~~~~ 137 (347)
T 2iy9_A 77 --PFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGV---QD--SWIRAIESIMSNV 137 (347)
T ss_dssp --SSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBC---TT--HHHHHHHHHHTCT
T ss_pred --CCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCC---HH--HHHHHHHHHHhhh
Confidence 111123567889999999999997 12 38999999999999998765 22 999999999999
Q ss_pred -----CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCC-------CCccccCCC----------ceEE
Q 037455 284 -----GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPR-------PYSIRNGAP----------WITA 341 (755)
Q Consensus 284 -----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~vit 341 (755)
|++|||||||..........+..++..+.++|++||+||||+|.. ...+++..+ ++|+
T Consensus 138 ~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~ 217 (347)
T 2iy9_A 138 FLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR 217 (347)
T ss_dssp TSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEE
T ss_pred hcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEE
Confidence 999999999976533445678888889999999999999999975 346677778 9999
Q ss_pred eccccc--cceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchh
Q 037455 342 VGAGTV--DREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVT 419 (755)
Q Consensus 342 Vga~~~--~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~ 419 (755)
|||.+. +.. .
T Consensus 218 Vga~~~~~~g~-----------~--------------------------------------------------------- 229 (347)
T 2iy9_A 218 VAALAQYRKGE-----------T--------------------------------------------------------- 229 (347)
T ss_dssp EEEECCCCTTS-----------C---------------------------------------------------------
T ss_pred EEEcccCCCCc-----------e---------------------------------------------------------
Confidence 998432 100 0
Q ss_pred HHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccC
Q 037455 420 VYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSS 499 (755)
Q Consensus 420 ~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 499 (755)
....+.++.||+
T Consensus 230 --------------------------------------------------------------------~~~~~~~~~fS~ 241 (347)
T 2iy9_A 230 --------------------------------------------------------------------PVLHGGGITGSR 241 (347)
T ss_dssp --------------------------------------------------------------------CCBCCCSSSCBC
T ss_pred --------------------------------------------------------------------ecccCCCCCCCC
Confidence 001124579999
Q ss_pred CCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 037455 500 RGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSAL 579 (755)
Q Consensus 500 ~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L 579 (755)
+||+ ||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|
T Consensus 242 ~G~~-------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L 301 (347)
T 2iy9_A 242 FGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTL 301 (347)
T ss_dssp BCTT-------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred CCCC-------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9985 679999999999998864 89999999999999999999999999999999999999
Q ss_pred HccccccccCCcccccCCCCCCCCCCcccccccCcCccCCC
Q 037455 580 MTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 580 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
++||+++...+ ...+|+|+||+.+|++.
T Consensus 302 ~~tA~~~~~~~-------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 302 LESADKYPSLV-------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHSEECGGGT-------------TTSGGGEECCHHHHHHH
T ss_pred HHhCccCCCCC-------------CccccCCEecHHHHHHH
Confidence 99999875321 25899999999999974
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=440.19 Aligned_cols=294 Identities=23% Similarity=0.287 Sum_probs=225.3
Q ss_pred CCCCc-CCCCCCccEEEEEcccccC------CCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeecccccccc
Q 037455 128 AGVWP-AAGFGSDIIVGILDTGIWP------ESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQN 200 (755)
Q Consensus 128 ~~~~~-~~~~G~Gv~VgVIDtGid~------~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~ 200 (755)
..+|+ .+++|+||+|||||||||+ .||+|.++ +...++|.+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC----
Confidence 45787 7899999999999999999 79999642 4444444322
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHH
Q 037455 201 GLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQA 280 (755)
Q Consensus 201 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a 280 (755)
.++.|+.||||||||||+|++.. +.||||+|+|+.+|+++..+...+..+++.++|+++
T Consensus 60 ----------~~~~d~~gHGT~VAgiiag~g~~-----------~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a 118 (434)
T 1wmd_A 60 ----------NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQA 118 (434)
T ss_dssp ----------TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHH
T ss_pred ----------CCCCCCCCcHHHHHHHHHcCCCC-----------ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHH
Confidence 23667899999999999986321 379999999999999987663112457899999999
Q ss_pred HhCCCcEEEEccCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCCCC--CccccCCCceEEeccccccceeeEEEEe
Q 037455 281 IADGVDIMSLSLAFPETTFDENPIAIGAFAA-LKRGIFVACSAGNSGPRP--YSIRNGAPWITAVGAGTVDREFAAHVTL 357 (755)
Q Consensus 281 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~ 357 (755)
+++|++|||||||...... .+....+++++ .++|+++|+||||+|... ...++.++++|+|||++..+...
T Consensus 119 ~~~g~~Vin~S~G~~~~~~-~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----- 192 (434)
T 1wmd_A 119 YSAGARIHTNSWGAAVNGA-YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----- 192 (434)
T ss_dssp HHTTCSEEEECCCBCCTTC-CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----
T ss_pred HhcCCeEEEecCCCCcCCc-CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc-----
Confidence 9999999999999865222 24556666665 579999999999999764 35567899999999854321000
Q ss_pred CCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEE
Q 037455 358 GNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIF 437 (755)
Q Consensus 358 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~ 437 (755)
+. .
T Consensus 193 -------------------------------------------------------~~---~------------------- 195 (434)
T 1wmd_A 193 -------------------------------------------------------GS---Y------------------- 195 (434)
T ss_dssp -------------------------------------------------------CG---G-------------------
T ss_pred -------------------------------------------------------Cc---c-------------------
Confidence 00 0
Q ss_pred ecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeC
Q 037455 438 SADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAP 517 (755)
Q Consensus 438 ~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~AP 517 (755)
....+.++.|||+||+.+ +++||||+||
T Consensus 196 --------------------------------------------------~~~~~~~a~fS~~G~~~~--g~~kpdi~Ap 223 (434)
T 1wmd_A 196 --------------------------------------------------ADNINHVAQFSSRGPTKD--GRIKPDVMAP 223 (434)
T ss_dssp --------------------------------------------------GSCTTSBCTTSCCCCCTT--SCCCCCEEEE
T ss_pred --------------------------------------------------cCCCCccccccCCCCCCC--CCCCceEEcC
Confidence 012357899999999986 8999999999
Q ss_pred CCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCC-----CHHHHHHHHHccccccccCCcc
Q 037455 518 GVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDW-----SSAAIRSALMTTADVLDNAYGM 592 (755)
Q Consensus 518 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l-----s~~~ik~~L~~TA~~~~~~g~~ 592 (755)
|++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.
T Consensus 224 G~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~----- 297 (434)
T 1wmd_A 224 GTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG----- 297 (434)
T ss_dssp CSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-----
T ss_pred CCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC-----
Confidence 99999998653210000 00012489999999999999999999999998865 89999999999998752
Q ss_pred cccCCCCCCCCCCcccccccCcCccCCCC
Q 037455 593 ITDKSTGVAGTPLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 593 ~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 621 (755)
..++++.||||++|+.+|++..
T Consensus 298 -------~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 298 -------LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp -------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred -------CCCCCccCCcCeEeHHHhcccc
Confidence 2345679999999999999754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=430.51 Aligned_cols=294 Identities=23% Similarity=0.345 Sum_probs=220.4
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceecccccccc-----ccCcee---eeeeecccccc
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTS-----HCNRKL---IGARSFSKGIR 198 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~-----~~n~ki---~g~~~~~~~~~ 198 (755)
+..+|+.+++|+||+||||||||| +||+|.++-.. +.+|... ..+.+. ....++.+.+.
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 87 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP------------GYDFISNSQISLDGDGRDADPFDEGDWFDNWA 87 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC------------CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTT
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc------------CccccCCccccccCCCccCCcccccccccccc
Confidence 456899999999999999999998 99999753111 1111100 000000 00000000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHH
Q 037455 199 QNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMD 278 (755)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~ 278 (755)
. ...+.+.....|..||||||||||+|...+.. | +.||||+|+|+.+|+++..+ ++.++++++|+
T Consensus 88 ~----~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~---~~~~~~~~ai~ 152 (340)
T 3lpc_A 88 C----GGRPDPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCG---GYDSDISDGLY 152 (340)
T ss_dssp T----SCTTCGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTB---CCHHHHHHHHH
T ss_pred c----cCCCCcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCC---CcHHHHHHHHH
Confidence 0 00112223356889999999999999864432 2 38999999999999998877 78899999999
Q ss_pred HHHh----------CCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccc
Q 037455 279 QAIA----------DGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTV 347 (755)
Q Consensus 279 ~a~~----------~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~ 347 (755)
|+++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||.+
T Consensus 153 ~a~~~~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~- 229 (340)
T 3lpc_A 153 WAAGGRIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT- 229 (340)
T ss_dssp HHHTCCCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC-
T ss_pred HHhcccccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC-
Confidence 9998 89999999999753 22456777888899999999999999997654 4677889999999832
Q ss_pred cceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHH
Q 037455 348 DREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEV 427 (755)
Q Consensus 348 ~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 427 (755)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCC
Q 037455 428 RKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSP 507 (755)
Q Consensus 428 ~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 507 (755)
..+.++.||++||
T Consensus 230 --------------------------------------------------------------~~~~~~~~S~~g~----- 242 (340)
T 3lpc_A 230 --------------------------------------------------------------SRGIRASFSNYGV----- 242 (340)
T ss_dssp --------------------------------------------------------------TTSSBCTTCCBST-----
T ss_pred --------------------------------------------------------------CCCCcCCCCCCCC-----
Confidence 1236789999997
Q ss_pred CcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhh-C---CCCCHHHHHHHHHccc
Q 037455 508 WILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT-H---RDWSSAAIRSALMTTA 583 (755)
Q Consensus 508 g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~ls~~~ik~~L~~TA 583 (755)
||||+|||++|+++++.+... .....|..++|||||||||||++|||+|+ + |.+++++||++|++||
T Consensus 243 ---~~di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA 313 (340)
T 3lpc_A 243 ---DVDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT 313 (340)
T ss_dssp ---TCCEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTC
T ss_pred ---CceEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcC
Confidence 559999999999998875321 11236999999999999999999999998 5 9999999999999999
Q ss_pred cccccCCcccccCCCCCCCCCCcccccccCcCccCCC
Q 037455 584 DVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 584 ~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
+++.. .....||+|+||+.+||+.
T Consensus 314 ~~~~~-------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 314 SPFNG-------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp BCCSS-------------CCSSCCCSSBCCHHHHHHH
T ss_pred CcCCC-------------CCCCCcccceecHHHHHHH
Confidence 98641 2345899999999999864
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=407.47 Aligned_cols=236 Identities=27% Similarity=0.415 Sum_probs=202.3
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
..+|..+++|+||+|||||||||++||+|.++ +...++|.+..
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 61 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDND---------- 61 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTTB----------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCCC----------
Confidence 45899999999999999999999999999742 33445554431
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC--CC
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD--GV 285 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~--g~ 285 (755)
.++.|..||||||||||+|.. .||||+|+|+.+|++++.+. ++.+++++||+|++++ ++
T Consensus 62 ---~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~--~~~~~~~~ai~~a~~~~~~~ 122 (284)
T 1sh7_A 62 ---ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGS--GTTSGVISGVDWVAQNASGP 122 (284)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSC--BCHHHHHHHHHHHHHHCCSS
T ss_pred ---CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCC--cCHHHHHHHHHHHHhCCCCC
Confidence 235678999999999999873 69999999999999988775 6888999999999984 79
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 286 DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 286 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
+|||||||.. ....+..++.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 123 ~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------ 180 (284)
T 1sh7_A 123 SVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT------------------ 180 (284)
T ss_dssp EEEEECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC------------------
T ss_pred cEEEeCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec------------------
Confidence 9999999985 3467888888999999999999999997643 4577889999999732
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
T Consensus 181 -------------------------------------------------------------------------------- 180 (284)
T 1sh7_A 181 -------------------------------------------------------------------------------- 180 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
..+.++.||++||.+ ||+|||++|+++
T Consensus 181 ---------------------------------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~ 207 (284)
T 1sh7_A 181 ---------------------------------------------SSDSRSSFSNWGSCV--------DLFAPGSQIKSA 207 (284)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------CCCCcCcccCCCCcc--------EEEeccCCeEEe
Confidence 123678999999865 999999999999
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~ 587 (755)
++.+ .|..++|||||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 208 ~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 208 WYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred cCCC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 8764 8999999999999999999999999999999999999999999764
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=400.50 Aligned_cols=238 Identities=29% Similarity=0.390 Sum_probs=201.6
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
..+|..+++|+||+|||||||||++||+|.++ +...++|.++.
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~~---------- 63 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDND---------- 63 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTTB----------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCCC----------
Confidence 45799999999999999999999999999743 33344554321
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh--CCC
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA--DGV 285 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~--~g~ 285 (755)
.++.|+.||||||||||+|.. .||||+|+|+.+|++++.+. ++.++++++|+|+++ .++
T Consensus 64 ---~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~--~~~~~~~~ai~~a~~~~~g~ 124 (278)
T 2b6n_A 64 ---YDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGS--GSNSGVIAGINWVKNNASGP 124 (278)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHCCSS
T ss_pred ---CCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCC--ccHHHHHHHHHHHHhCCCCC
Confidence 235688999999999999862 69999999999999988775 788999999999998 599
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 286 DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 286 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
+|||||||... ...+..++.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 125 ~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------ 182 (278)
T 2b6n_A 125 AVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT------------------ 182 (278)
T ss_dssp EEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------
T ss_pred eEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC------------------
Confidence 99999999853 457788888999999999999999997654 3577789999999732
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (278)
T 2b6n_A 183 -------------------------------------------------------------------------------- 182 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
..+.++.||++||.. ||+|||++|+++
T Consensus 183 ---------------------------------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~ 209 (278)
T 2b6n_A 183 ---------------------------------------------SNDSRSSFSNYGTCL--------DIYAPGSSITSS 209 (278)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------CCCCcCCcCCCCCCC--------eEEeCCCCeECc
Confidence 123568899999854 999999999999
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~ 587 (755)
++... ..|..++|||||||||||++|||+|++|+|++.|||++|++||++..
T Consensus 210 ~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 210 WYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp CTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred ccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 87532 27999999999999999999999999999999999999999998753
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=404.73 Aligned_cols=225 Identities=31% Similarity=0.423 Sum_probs=194.2
Q ss_pred CCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCC
Q 037455 135 GFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPR 214 (755)
Q Consensus 135 ~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (755)
.+|+||+|+|||||||++||+|.++ +...++|.. ++.
T Consensus 28 ~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~----------------~~~ 64 (279)
T 2pwa_A 28 SAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY----------------SSR 64 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS----------------CSS
T ss_pred CCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC----------------CCC
Confidence 7899999999999999999999753 333344431 245
Q ss_pred CCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCC-------cE
Q 037455 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGV-------DI 287 (755)
Q Consensus 215 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~-------dV 287 (755)
|..||||||||||+|+. .||||+|+|+.+|++++.+. ++.++++++|+|++++++ +|
T Consensus 65 d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~--~~~~~~~~ai~~a~~~~~~~~~~~~~V 128 (279)
T 2pwa_A 65 DGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGS--GQYSTIIAGMDFVASDKNNRNCPKGVV 128 (279)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred CCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCC--cCHHHHHHHHHHHHhcCccccCCCccE
Confidence 78999999999999862 79999999999999988775 788999999999999887 99
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEEee
Q 037455 288 MSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIG 366 (755)
Q Consensus 288 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g 366 (755)
||||||.. ..+.+..++.++.++|+++|+||||+|.... ..|+..+++|+|||.+
T Consensus 129 in~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------- 184 (279)
T 2pwa_A 129 ASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD-------------------- 184 (279)
T ss_dssp EEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------
T ss_pred EEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec--------------------
Confidence 99999974 3467888888999999999999999997653 4577889999999832
Q ss_pred eeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC
Q 037455 367 KSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS 446 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~ 446 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T 2pwa_A 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
..+.++.||++||.+ ||+|||++|+++++
T Consensus 185 -------------------------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~ 213 (279)
T 2pwa_A 185 -------------------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWI 213 (279)
T ss_dssp -------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEET
T ss_pred -------------------------------------------CCCCcCCcCCCCCcc--------eEEEecCCeEEeec
Confidence 123678999999864 99999999999998
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~ 587 (755)
.+ .|..++|||||||||||++|||+|+ |.+++.|||++|++||++..
T Consensus 214 ~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 214 GG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGD 260 (279)
T ss_dssp TT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESC
T ss_pred CC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccc
Confidence 75 8999999999999999999999999 99999999999999999753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=401.50 Aligned_cols=237 Identities=27% Similarity=0.397 Sum_probs=203.0
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
..+|..+.+|+||+|||||||||++||+|.++ +...++|...
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~----------- 62 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALGG----------- 62 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTSS-----------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCCC-----------
Confidence 46899999999999999999999999999743 3333444331
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC--CC
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD--GV 285 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~--g~ 285 (755)
++.|..||||||||||+|.. .||||+|+|+.+|++++.+. ...++++++|+|+++. ++
T Consensus 63 ----~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~ 122 (276)
T 4dzt_A 63 ----NGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGS--GSTSGVIAGVDWVTRNHRRP 122 (276)
T ss_dssp ----CSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHCCSS
T ss_pred ----CCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHhcCCCC
Confidence 25578999999999999873 69999999999999988776 7889999999999987 99
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc-cccCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 286 DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS-IRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 286 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
+|||||||... ...+..++.++.++|+++|+||||+|..... .+...+++|+||+.+
T Consensus 123 ~vin~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------ 180 (276)
T 4dzt_A 123 AVANMSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT------------------ 180 (276)
T ss_dssp EEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------
T ss_pred eEEEECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC------------------
Confidence 99999999753 4678888889999999999999999976543 377889999999732
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
..+.++.||++||.. ||+|||++|+++
T Consensus 181 ---------------------------------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~ 207 (276)
T 4dzt_A 181 ---------------------------------------------SSDARASFSNYGSCV--------DLFAPGASIPSA 207 (276)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEcc
Confidence 123678999999976 999999999999
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccc
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDN 588 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~ 588 (755)
++.... .|..++|||||||+|||++|||+|++|+++++|||++|++||++...
T Consensus 208 ~~~~~~-----------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 208 WYTSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp CTTSSS-----------CEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred ccCCCC-----------ceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 876532 79999999999999999999999999999999999999999998653
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=453.22 Aligned_cols=356 Identities=21% Similarity=0.229 Sum_probs=232.9
Q ss_pred CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-----CCCcEE
Q 037455 214 RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-----DGVDIM 288 (755)
Q Consensus 214 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-----~g~dVI 288 (755)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..+....+..+++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999986 32 1248999999999999997654311355677888888877 799999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCCCCCc--ccc--CCCceEEeccccccceeeEEEEeCCceEE
Q 037455 289 SLSLAFPETTFDENPIAIGAFAAL-KRGIFVACSAGNSGPRPYS--IRN--GAPWITAVGAGTVDREFAAHVTLGNEELT 363 (755)
Q Consensus 289 n~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~ 363 (755)
|||||........+.+..++.++. ++|++||+||||+|....+ .++ .++++|+|||++........+..
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~------ 411 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM------ 411 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc------
Confidence 999999764444567788888886 8999999999999976443 455 38999999996432211000000
Q ss_pred EeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC
Q 037455 364 VIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ 443 (755)
Q Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~ 443 (755)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEe
Q 037455 444 HLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523 (755)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~s 523 (755)
.....+.++.|||+||+.+ +++||||+|||++|++
T Consensus 412 -------------------------------------------~~~~~g~~asFSS~GPt~d--g~~KpDIaAPG~~I~S 446 (1354)
T 3lxu_X 412 -------------------------------------------REKLPGNVYTWTSRDPCID--GGQGVTVCAPGGAIAS 446 (1354)
T ss_dssp -------------------------------------------------CCCCCCCCSCCSS--SSCCEEEEEEC-----
T ss_pred -------------------------------------------ccCCCCccccccCCCCCcc--CCCcceEEecCceEEE
Confidence 0011247899999999986 8999999999999999
Q ss_pred eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHccccccccCCcccccCCCC
Q 037455 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----THRDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599 (755)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 599 (755)
+..... ++|..++|||||||||||++|||++ .+|.|++.+||++|++||+++..
T Consensus 447 t~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~----------- 504 (1354)
T 3lxu_X 447 VPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY----------- 504 (1354)
T ss_dssp ---------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT-----------
T ss_pred eecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC-----------
Confidence 865432 2799999999999999999999986 79999999999999999998742
Q ss_pred CCCCCCcccccccCcCccCCCCeEEEcc---ccccccCCCCCCCCCcceeeeecCCCCceEEEEEEEEecC-------C-
Q 037455 600 VAGTPLDFGAGHINPNKAMDPGLVVLTG---TSDFTCQYANLDLNYPSFIIILNNTNTASFTFKRVLTNVA-------D- 668 (755)
Q Consensus 600 ~~~~~~~~G~G~in~~~Av~~~lv~~~~---~~~~~~~~~~~~ln~~s~~~~~~~~~~~~~~~~~tv~N~~-------~- 668 (755)
.+++.||+|+||+.+|++..+.+-.. ...+.|... ..+-..|.+..... .....|+++|+-.- +
T Consensus 505 --~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~--~~~~rgIylR~~~~-~~~~~~tv~V~p~f~~~~~~~~~ 579 (1354)
T 3lxu_X 505 --VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVG--NNADKGIHLRQGVQ-RNSIDYNVYIEPIFYNDKEADPK 579 (1354)
T ss_dssp --SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEET--TTTBSSEEECSSCC-CSCEEEEEEEEEEESSCSCSSST
T ss_pred --CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEec--CCCCCceEEecccc-CCceEEEEEEeeeecCcccCChh
Confidence 24568999999999999865433100 001222211 11111122211111 12334444332211 1
Q ss_pred CCce--EEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEeeC---CceEEEeEE
Q 037455 669 TKSA--YTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVN---GKHLVRSPI 743 (755)
Q Consensus 669 ~~~t--y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~---~~~~v~~P~ 743 (755)
.... -++.+...+ -.|+ -|+.+.+ .++..+|.|+|++.. ...+ .++++|...+.. .....|+|+
T Consensus 580 ~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~-----L~~G--~h~~~v~~~D~~~~~~gp~f~ipv 648 (1354)
T 3lxu_X 580 DKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTG-----LQPG--VHSAVIRAYDTDCVQKGSLFEIPV 648 (1354)
T ss_dssp TCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGG-----CCSE--EEEEEEEEEESSCTTSCCSEEEEE
T ss_pred hccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCC-----CCCc--ceeEEEEEEEcCCcccCceEEeeE
Confidence 1111 222222111 1333 2666666 588889999999987 3455 899999986642 368899999
Q ss_pred EEEE
Q 037455 744 VSAF 747 (755)
Q Consensus 744 ~~~~ 747 (755)
.|..
T Consensus 649 Tv~~ 652 (1354)
T 3lxu_X 649 TVVQ 652 (1354)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9876
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-47 Score=425.13 Aligned_cols=291 Identities=17% Similarity=0.137 Sum_probs=214.4
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+.+++|+||+|||||||||++||+|.++- . ....++|.++. ..
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------~-------------~~~~~d~~~~~-------~~ 74 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------D-------------PGASFDVNDQD-------PD 74 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------C-------------GGGCEETTTTB-------SC
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------C-------------ccCcccccCCC-------CC
Confidence 3568999999999999999999999999997530 0 00123333321 11
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCC
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGV 285 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~ 285 (755)
+.+...+.|.++|||||||||||...++. | +.||||+|+|+.+|+++ +..+++++|++++++ +++
T Consensus 75 p~~~~~~~d~~gHGT~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~------g~~~~~~~ai~~a~~~~~~ 140 (471)
T 1p8j_A 75 PQPRYTQMNDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLD------GEVTDAVEARSLGLNPNHI 140 (471)
T ss_dssp CCCCCCTTCTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSS------SCCCHHHHHHHHTSCTTTC
T ss_pred CCCccCCCCCCCcHHHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccC------CchhHHHHHHHhhhccCCC
Confidence 11122356889999999999999754322 1 38999999999999985 346789999999999 999
Q ss_pred cEEEEccCCCCCC----CCCCHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEeccccccceee
Q 037455 286 DIMSLSLAFPETT----FDENPIAIGAFAALK-----RGIFVACSAGNSGPRPYS----IRNGAPWITAVGAGTVDREFA 352 (755)
Q Consensus 286 dVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~ 352 (755)
+|||||||..... .....+..++.++.+ +|++||+||||+|..... ....++++|+|||.+
T Consensus 141 ~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~------ 214 (471)
T 1p8j_A 141 HIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------ 214 (471)
T ss_dssp CEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC------
T ss_pred eEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc------
Confidence 9999999986421 112234555555543 699999999999975321 122457899999732
Q ss_pred EEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCc
Q 037455 353 AHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGA 432 (755)
Q Consensus 353 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga 432 (755)
T Consensus 215 -------------------------------------------------------------------------------- 214 (471)
T 1p8j_A 215 -------------------------------------------------------------------------------- 214 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccC
Q 037455 433 AGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKP 512 (755)
Q Consensus 433 ~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKP 512 (755)
..+.++.||++||... ...+|
T Consensus 215 ---------------------------------------------------------~~g~~a~~S~~g~~~~--~~~~~ 235 (471)
T 1p8j_A 215 ---------------------------------------------------------QFGNVPWYSEACSSTL--ATTYS 235 (471)
T ss_dssp ---------------------------------------------------------TTSCCCTTCCBCTTCC--EEEEC
T ss_pred ---------------------------------------------------------CCCCcccccCCCCcce--EEeCC
Confidence 1235788999999875 34456
Q ss_pred eeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcc
Q 037455 513 DILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGM 592 (755)
Q Consensus 513 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~ 592 (755)
...+||.+|+++...+ ..|..++|||||||||||++|||+|++|+|++++||++|++||+++......
T Consensus 236 ~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~ 303 (471)
T 1p8j_A 236 SGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADD 303 (471)
T ss_dssp CCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSC
T ss_pred CCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCC
Confidence 6666678999997643 3799999999999999999999999999999999999999999987643221
Q ss_pred cccCCCCCCCCCCcccccccCcCccCCCC
Q 037455 593 ITDKSTGVAGTPLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 593 ~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 621 (755)
..... ........||||+||+.+|++..
T Consensus 304 ~~~n~-~g~~~~~~~G~G~vda~~Av~~a 331 (471)
T 1p8j_A 304 WATNG-VGRKVSHSYGYGLLDAGAMVALA 331 (471)
T ss_dssp CEECT-TSCEEBTTTBTCBCCHHHHHHHH
T ss_pred ceecC-CCcccCCCCCCEEEcHhHHHHHh
Confidence 11110 11123468999999999999743
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=417.65 Aligned_cols=279 Identities=21% Similarity=0.196 Sum_probs=203.1
Q ss_pred CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCC
Q 037455 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDD 209 (755)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (755)
.|..+++|+||+|+|||||||++||+|.++ .....+.+..+. ++ ...
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr--------------------------~~~~~~~~v~~~---dg----~~f 64 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGR--------------------------VMVTDFENVPEE---DG----TRF 64 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTT--------------------------EEEEEEECCCCC---C--------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHccc--------------------------ccccCcccccCC---CC----ccc
Confidence 688899999999999999999999999753 011111111100 00 000
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC------
Q 037455 210 YDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD------ 283 (755)
Q Consensus 210 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~------ 283 (755)
...+.|..||||||||||+|+. .||||+|+|+.+||+++.+. ++.+++++||+|+++.
T Consensus 65 ~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~--g~~s~ii~ai~~a~~~~~~~~~ 128 (546)
T 2qtw_B 65 HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGK--GTVSGTLIGLEFIRKSQLVQPV 128 (546)
T ss_dssp ---CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSE--EEHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHhhhhccC
Confidence 1235678999999999999873 69999999999999988775 6788999999999984
Q ss_pred CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceE
Q 037455 284 GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEEL 362 (755)
Q Consensus 284 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 362 (755)
+++|||||||.. ....+..++.++.++|++||+||||+|.... ..|+..+++|+|||.+.+...
T Consensus 129 g~~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~----------- 193 (546)
T 2qtw_B 129 GPLVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------- 193 (546)
T ss_dssp SCEEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-----------
T ss_pred CCeEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-----------
Confidence 899999999974 3467888888999999999999999997643 457788999999985421100
Q ss_pred EEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCC
Q 037455 363 TVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSR 442 (755)
Q Consensus 363 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g 442 (755)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEE
Q 037455 443 QHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDIL 522 (755)
Q Consensus 443 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~ 522 (755)
...-..||++||. |||+|||++|+
T Consensus 194 ------------------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~ 217 (546)
T 2qtw_B 194 ------------------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDII 217 (546)
T ss_dssp ------------------------------------------------CEETTEECCBSTT--------CCEEEECSSEE
T ss_pred ------------------------------------------------ccccCCcCCCCCc--------ceEEecCccEE
Confidence 0000238999974 59999999999
Q ss_pred eeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccc------cC
Q 037455 523 AAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMIT------DK 596 (755)
Q Consensus 523 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~------~~ 596 (755)
++++... ..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.......+. .+
T Consensus 218 St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tp 286 (546)
T 2qtw_B 218 GASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTP 286 (546)
T ss_dssp EECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSC
T ss_pred eeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCc
Confidence 9988642 279999999999999999999999999999999999999999986432211000 00
Q ss_pred C--CCCCCCCCcccccc--cCcCccCC
Q 037455 597 S--TGVAGTPLDFGAGH--INPNKAMD 619 (755)
Q Consensus 597 ~--~~~~~~~~~~G~G~--in~~~Av~ 619 (755)
. ...+.....+|+|+ .++..+..
T Consensus 287 N~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 287 NLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp CEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred cchhccCCcccccCCCcchhchhccCC
Confidence 0 01222456789999 77777764
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=389.52 Aligned_cols=229 Identities=29% Similarity=0.416 Sum_probs=195.4
Q ss_pred CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCC
Q 037455 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDD 209 (755)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (755)
.|+.. +|+||+|||||||||++||+|.++ +...++|..+
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------- 63 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAST------------- 63 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSSS-------------
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCCC-------------
Confidence 55555 899999999999999999999753 3333444332
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCC-----
Q 037455 210 YDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADG----- 284 (755)
Q Consensus 210 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g----- 284 (755)
..|..||||||||||+|+. .||||+|+|+.+|+++..+. ++.++++++|+|+++++
T Consensus 64 ---~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~~~ 124 (279)
T 3f7m_A 64 ---ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGS--GSLSNIIAGMDFVASDRQSRNC 124 (279)
T ss_dssp ---SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHGGGSCC
T ss_pred ---CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCC--cCHHHHHHHHHHHHhccccccC
Confidence 2278899999999999862 69999999999999988775 78899999999999976
Q ss_pred --CcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc-cccCCCceEEeccccccceeeEEEEeCCce
Q 037455 285 --VDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS-IRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 285 --~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
++|||||||.. ....+..++.++.++|++||+||||+|..... .++..+++|+|||.+
T Consensus 125 ~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------- 185 (279)
T 3f7m_A 125 PRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD--------------- 185 (279)
T ss_dssp TTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------
T ss_pred CCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC---------------
Confidence 89999999974 45678888889999999999999999976543 477889999999832
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcE
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDI 521 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I 521 (755)
..+.++.||++||.. ||+|||++|
T Consensus 186 ------------------------------------------------~~~~~~~~S~~g~~~--------di~ApG~~i 209 (279)
T 3f7m_A 186 ------------------------------------------------SNDVRSTFSNYGRVV--------DIFAPGTSI 209 (279)
T ss_dssp ------------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred ------------------------------------------------CCCCCCCCCCCCCCC--------eEEECCCCe
Confidence 124678999999865 999999999
Q ss_pred EeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 037455 522 LAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587 (755)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~ 587 (755)
+++++.+ .|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 210 ~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 210 TSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EeecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 9998764 7999999999999999999999999999 99999999999999754
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=419.65 Aligned_cols=283 Identities=17% Similarity=0.197 Sum_probs=211.8
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+.+++|+||+|||||||||++||+|.++-. ..+.++|..+..
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~~-------- 89 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNTN-------- 89 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTBS--------
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc-------------------------ccCcccCCCCCC--------
Confidence 34589999999999999999999999999975310 011233433210
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
......|.+||||||||||||...++. | +.||||+|+|+.+|+++.. ++..++++||+|+++++ +
T Consensus 90 --~~~p~~d~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~----~~~~~~~~ai~~a~~~~-~ 154 (503)
T 2id4_A 90 --LPKPRLSDDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD----ITTEDEAASLIYGLDVN-D 154 (503)
T ss_dssp --CCCCCSTTTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC----CCHHHHHHHTTTTTTTC-S
T ss_pred --CCCCCCCCCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC----CChHHHHHHHHhHhhcC-C
Confidence 011135788999999999999753322 1 3799999999999998743 57889999999999988 9
Q ss_pred EEEEccCCCCCC----CCCCHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--ccc--cCCCceEEeccccccceeeE
Q 037455 287 IMSLSLAFPETT----FDENPIAIGAFAAL-----KRGIFVACSAGNSGPRPY--SIR--NGAPWITAVGAGTVDREFAA 353 (755)
Q Consensus 287 VIn~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~p~vitVga~~~~~~~~~ 353 (755)
|||||||..... .....+..++.++. .+|+++|+||||+|.... .++ ..++++|+|||.+
T Consensus 155 Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~------- 227 (503)
T 2id4_A 155 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID------- 227 (503)
T ss_dssp EEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-------
T ss_pred EEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC-------
Confidence 999999986421 12234666666665 379999999999996532 222 2467799999732
Q ss_pred EEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCce
Q 037455 354 HVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAA 433 (755)
Q Consensus 354 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~ 433 (755)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCe
Q 037455 434 GAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPD 513 (755)
Q Consensus 434 g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPD 513 (755)
..+.++.||++||.. |
T Consensus 228 --------------------------------------------------------~~~~~a~~S~~g~~~--------~ 243 (503)
T 2id4_A 228 --------------------------------------------------------HKDLHPPYSEGCSAV--------M 243 (503)
T ss_dssp --------------------------------------------------------TTSCCCTTCCCCTTE--------E
T ss_pred --------------------------------------------------------CCCCcCCcCCCCCcc--------e
Confidence 123568899999987 7
Q ss_pred eEe----CCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccC
Q 037455 514 ILA----PGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNA 589 (755)
Q Consensus 514 I~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~ 589 (755)
++| ||..|+++.... ..|..++|||||||||||++|||+|++|+|++.+||++|++||+++...
T Consensus 244 ~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~ 311 (503)
T 2id4_A 244 AVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 311 (503)
T ss_dssp EEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTC
T ss_pred EeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCC
Confidence 877 899999995432 3899999999999999999999999999999999999999999987643
Q ss_pred -CcccccCCCCCCCCCCcccccccCcCccCCCC
Q 037455 590 -YGMITDKSTGVAGTPLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 590 -g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 621 (755)
........ ........||||+||+.+||+..
T Consensus 312 ~~~~~~~~~-~g~~~~~~~G~G~vda~~Av~~a 343 (503)
T 2id4_A 312 ADGDWRDSA-MGKKYSHRYGFGKIDAHKLIEMS 343 (503)
T ss_dssp GGGCCEECS-SSSEEBTTTBTCBCCHHHHHHHH
T ss_pred cCCCceecC-CCCccCcccCCcEecHHHHHHHH
Confidence 11111100 11223468999999999999743
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=408.81 Aligned_cols=317 Identities=18% Similarity=0.163 Sum_probs=198.4
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
..+|.++++|+||+|||||||||++||||.++ ...+.++|..+..
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n--------------------------~~~~~~~~~~~~~--------- 104 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN--------------------------VRPGSKNVVTGSD--------- 104 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG--------------------------BCSCCBCTTTSSS---------
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc--------------------------cccCcceeecCCC---------
Confidence 45899999999999999999999999999753 0112233333211
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHH-HHHHhCCCc
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGM-DQAIADGVD 286 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai-~~a~~~g~d 286 (755)
+.....|.++|||||||||||.. ++ .| +.||||+|+|+.+|++++.+. +..++++.++ +++..++++
T Consensus 105 -dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~~--~~~~~~~~a~~~~~~~~~~~ 172 (600)
T 3hjr_A 105 -DPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNSQ--QLQKDWLYALGDSNASRDNR 172 (600)
T ss_dssp -CCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTCC--CCHHHHHHHTTSSHHHHTCS
T ss_pred -CCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCCC--ccHHHHHHHhhhhhhhcCCC
Confidence 11123357899999999999863 11 12 389999999999999988765 6777887665 677788999
Q ss_pred EEEEccCCCC-CCCCCCHH-H----HHHHH--HHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeC
Q 037455 287 IMSLSLAFPE-TTFDENPI-A----IGAFA--ALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLG 358 (755)
Q Consensus 287 VIn~SlG~~~-~~~~~~~~-~----~a~~~--a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~ 358 (755)
|||||||... .....+.. . .++.. ...+|+++|+||||.+....... . .+.+ .+
T Consensus 173 I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~-~~~~------------~g 234 (600)
T 3hjr_A 173 VFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----Y-VLNR------------TG 234 (600)
T ss_dssp EEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT-----E-EEEE------------ES
T ss_pred EEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc-----c-cccc------------CC
Confidence 9999999764 22222222 1 12212 22579999999999864311000 0 0000 00
Q ss_pred CceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEe
Q 037455 359 NEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438 (755)
Q Consensus 359 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~ 438 (755)
++.. ...+.|.... +......|.+.
T Consensus 235 ~~~~-------------------------~~~~~~~~d~--~~~~~~~IsVg---------------------------- 259 (600)
T 3hjr_A 235 NGPK-------------------------LPFENSNLDP--SNSNFWNLVVS---------------------------- 259 (600)
T ss_dssp SCCC-------------------------CCSSBTTSSG--GGGSSSEEEEE----------------------------
T ss_pred CCCC-------------------------CCcccccccC--ccccCcceEEe----------------------------
Confidence 0000 0000010000 00000011111
Q ss_pred cCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCC
Q 037455 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPG 518 (755)
Q Consensus 439 n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG 518 (755)
.....+.++.||++|+.. +++|||
T Consensus 260 ------------------------------------------------A~~~~g~~a~yS~~G~~v--------~~~apg 283 (600)
T 3hjr_A 260 ------------------------------------------------ALNADGVRSSYSSVGSNI--------FLSATG 283 (600)
T ss_dssp ------------------------------------------------EECTTSSBCTTCCBCTTC--------CEEEEC
T ss_pred ------------------------------------------------eecCCCCEeecccCCcce--------eeccCC
Confidence 012346788999999987 899998
Q ss_pred CcE--------EeeecCCCCCC-------------CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 037455 519 VDI--------LAAWVPNNPWQ-------------PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRS 577 (755)
Q Consensus 519 ~~I--------~sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 577 (755)
.++ .+..++..... ..........|..++|||||||||||++|||+|++|+||++|||+
T Consensus 284 ~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~ 363 (600)
T 3hjr_A 284 GEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRD 363 (600)
T ss_dssp CSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred CCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHH
Confidence 752 22222211000 001111234688999999999999999999999999999999999
Q ss_pred HHHccccccccCCcccccC-------------------CCCCCCCCCcccccccCcCccCCC
Q 037455 578 ALMTTADVLDNAYGMITDK-------------------STGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 578 ~L~~TA~~~~~~g~~~~~~-------------------~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
+|++||++++....|.... ..........||+|+||+.+||+.
T Consensus 364 ~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~ 425 (600)
T 3hjr_A 364 LLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALEL 425 (600)
T ss_dssp HHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHH
Confidence 9999999988665442110 001111245799999999999863
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=255.56 Aligned_cols=96 Identities=25% Similarity=0.381 Sum_probs=77.2
Q ss_pred eeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh---CCCcEEEEccCCCCCCCC---CCHHHHHHHHHHhCCcEE
Q 037455 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA---DGVDIMSLSLAFPETTFD---ENPIAIGAFAALKRGIFV 318 (755)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~~---~~~~~~a~~~a~~~Gi~v 318 (755)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||....... ...+..++.+|..+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~-------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP-------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHCTTSEEEEEECC-------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhccCCCCeEEEEEcC-------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEE
Confidence 4799999999999973 246789999999998 799999999998653221 234566677788899999
Q ss_pred EEecCCCCCCC--------CccccCCCceEEeccccc
Q 037455 319 ACSAGNSGPRP--------YSIRNGAPWITAVGAGTV 347 (755)
Q Consensus 319 V~AAGN~g~~~--------~~~~~~~p~vitVga~~~ 347 (755)
|+||||+|... ..+++.+|++++||+++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999999643 356678999999999653
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-22 Score=213.53 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=79.4
Q ss_pred eeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCCcEEEEccCCCCCC----CCCCHHHHHHHHHHhCCcEEEE
Q 037455 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGVDIMSLSLAFPETT----FDENPIAIGAFAALKRGIFVAC 320 (755)
Q Consensus 246 ~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~~----~~~~~~~~a~~~a~~~Gi~vV~ 320 (755)
..+||+++++.|++.+..+ ++.++++++|+||++ ++++|||||||..... ...+.+..++.+|..+||+||+
T Consensus 90 g~~aP~a~~~~~~~~~~~~---~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~ 166 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSA---SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSV 166 (372)
T ss_dssp HHTTSCEEEEEEEEECTTS---STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhcCCCCcEEEEEeCCCCC---cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4578999999999987655 577899999999998 8999999999985411 1123566677778889999999
Q ss_pred ecCCCCCCCC-------------ccccCCCceEEeccccc
Q 037455 321 SAGNSGPRPY-------------SIRNGAPWITAVGAGTV 347 (755)
Q Consensus 321 AAGN~g~~~~-------------~~~~~~p~vitVga~~~ 347 (755)
||||+|...+ .+++.+|++++||+++.
T Consensus 167 AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 167 SSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp ECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred EECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9999996532 45678999999999654
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.2e-10 Score=124.08 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=61.9
Q ss_pred eecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh--CCCcEEEEccCCCCCCCC---CCHHHHHHHHHHhCCcEEEEe
Q 037455 247 GVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA--DGVDIMSLSLAFPETTFD---ENPIAIGAFAALKRGIFVACS 321 (755)
Q Consensus 247 GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~--~g~dVIn~SlG~~~~~~~---~~~~~~a~~~a~~~Gi~vV~A 321 (755)
+++++..++.|-..+. . .....++..+++... +-++|||||||....... ...+...+..+..+||.|++|
T Consensus 263 a~~~~i~~~~~~~~g~-~---~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~A 338 (544)
T 3edy_A 263 SAGANISTWVYSSPGR-H---EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFA 338 (544)
T ss_dssp HHSTTSEEEEECCCSC-C---TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCceEEEEecCCc-c---cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4455555554432111 1 122345554544433 467899999998753221 223455566778899999999
Q ss_pred cCCCCCCC----------CccccCCCceEEeccccc
Q 037455 322 AGNSGPRP----------YSIRNGAPWITAVGAGTV 347 (755)
Q Consensus 322 AGN~g~~~----------~~~~~~~p~vitVga~~~ 347 (755)
+||+|... ..+++.+|+|++||+++.
T Consensus 339 SGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 339 SGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred cCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99999643 256778999999998653
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-10 Score=99.13 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=66.9
Q ss_pred CCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEec
Q 037455 29 DRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLE 108 (755)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~ 108 (755)
.+++|||+|++...+.....+.+|+.+++.+.. . +.+++++|++.|+||+++++++++++|+++|+|.+|+|+
T Consensus 36 ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~~-~------~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D 108 (114)
T 2w2n_P 36 LPGTYVVVLKEETHLSQSERTARRLQAQAARRG-Y------LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 108 (114)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-C------CCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHHHHhhhcc-c------CCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeC
Confidence 578999999988765555678889988877632 2 479999999999999999999999999999999999999
Q ss_pred eeecc
Q 037455 109 SFGHL 113 (755)
Q Consensus 109 ~~~~~ 113 (755)
+.++.
T Consensus 109 ~~v~~ 113 (114)
T 2w2n_P 109 SSVFA 113 (114)
T ss_dssp EEEEE
T ss_pred ceEec
Confidence 98764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-09 Score=86.82 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEec
Q 037455 29 DRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLE 108 (755)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~ 108 (755)
.+++|||+||++..... ..++++++. +.++.++|++ |+||+++++++++++|+++|+|.+|||+
T Consensus 7 i~~~YIV~~k~~~~~~~------~~~~~~~~~---------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D 70 (80)
T 3cnq_P 7 GEKKYIVGFKQGFKSCA------KKEDVISEK---------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEED 70 (80)
T ss_dssp -CCEEEEEECTTCCSHH------HHHHHHHTT---------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEEC
T ss_pred CCCCEEEEECCCCChHH------HHHHHHHHc---------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeC
Confidence 57899999998875411 122233322 4789999998 9999999999999999999999999999
Q ss_pred eeecccccc
Q 037455 109 SFGHLHTTR 117 (755)
Q Consensus 109 ~~~~~~~~~ 117 (755)
+.++++++.
T Consensus 71 ~~v~~~tt~ 79 (80)
T 3cnq_P 71 KLYRALSAT 79 (80)
T ss_dssp CEEEECCC-
T ss_pred cEEEEeeec
Confidence 999887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.75 E-value=8.7e-09 Score=92.71 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEec
Q 037455 29 DRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLE 108 (755)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~ 108 (755)
.+++|||+||++........+.+++.+.+++.. . +.++.++|++.|+||+++++++++++|+++|+|.+|+++
T Consensus 46 Ip~~YIV~~K~~~~~~~~~~~~~~l~~~~~~r~-~------g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D 118 (124)
T 2qtw_A 46 LPGTYVVVLKEETHLSQSERTARRLQAQAARRG-Y------LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 118 (124)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-C------CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHhhcc-c------CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeC
Confidence 478999999998754333344444444433322 2 478999999999999999999999999999999999999
Q ss_pred eeecc
Q 037455 109 SFGHL 113 (755)
Q Consensus 109 ~~~~~ 113 (755)
+.++.
T Consensus 119 ~~v~a 123 (124)
T 2qtw_A 119 SSVFA 123 (124)
T ss_dssp EEEEE
T ss_pred ceEec
Confidence 98764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=91.30 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=80.0
Q ss_pred eeeEEeccCCCCCcccCCCCCCCcc-------ccceEEEEeecC-CCchhHHHHHHHHHHcCceEEEEecC--CCCcCC-
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKA-------VAGKYIFCAFDY-NGNVTVYQQLEEVRKSGAAGAIFSAD--SRQHLS- 446 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~-------~~gkivl~~~g~-~~~~~~~~~~~~~~~~ga~g~i~~n~--~g~~~~- 446 (755)
.-.+++.........|.+....... .+|||+|++||. |.|. +|..+++++||.++|+||+ .+....
T Consensus 71 ~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~---~Kv~nAq~aGA~avIIyNn~~~g~~~~~ 147 (194)
T 3icu_A 71 AGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFA---DKIHLAYERGASGAVIFNFPGTRNEVIP 147 (194)
T ss_dssp EEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHH---HHHHHHHHTTCSEEEEECCTTCTTCCCC
T ss_pred EEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHH---HHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 3355555443457889887653222 478999999999 9998 9999999999999999998 333221
Q ss_pred ---CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeee
Q 037455 447 ---PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQI 483 (755)
Q Consensus 447 ---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 483 (755)
.....||+++|+..+|+.|++++.++...+++|.+..
T Consensus 148 m~~~~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 148 MSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CCCTTCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ecCCCCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 1235799999999999999999999988888887754
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5e-08 Score=79.99 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=54.3
Q ss_pred CeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEec-cceeEEEEEeCHHHHHHhhcC--CCeEEEEe
Q 037455 31 KTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYN-HVMDGFSAVLSKNQLEQLQKM--PGHHATYL 107 (755)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~l~~~~~~~L~~~--~~V~~v~~ 107 (755)
++|||.||++........+.+++. +. +.++.+.|+ .+|+||++.++++.+++|+++ |.|.+||+
T Consensus 3 ~sYIV~lk~~~~~~~~~~~~~~~~----~~---------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~ 69 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDKIRETKDEVI----AE---------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEE 69 (76)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHH----HH---------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHH----hh---------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcC
Confidence 689999998764432223333333 22 357889994 799999999999999999999 89999999
Q ss_pred ceeecc
Q 037455 108 ESFGHL 113 (755)
Q Consensus 108 ~~~~~~ 113 (755)
++.++.
T Consensus 70 D~~v~~ 75 (76)
T 1v5i_B 70 DHVAHA 75 (76)
T ss_dssp CCEEEC
T ss_pred CcEEeC
Confidence 998764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=57.90 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=50.0
Q ss_pred CeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEecee
Q 037455 31 KTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESF 110 (755)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~~~ 110 (755)
.+|||.|+++... +..+++. +.++.++|. .+++++++++++.+++|+++|+|++|++|..
T Consensus 2 ~~~IV~f~~~~~~----------~~~i~~~---------gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~ 61 (65)
T 2z30_B 2 IRVIVSVDKAKFN----------PHEVLGI---------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQ 61 (65)
T ss_dssp EEEEEEECGGGCC----------GGGGGGG---------TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCE
T ss_pred eeEEEEEcCcchh----------HHHHHHC---------CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcE
Confidence 4899999875211 1122322 689999998 9999999999999999999999999999987
Q ss_pred ec
Q 037455 111 GH 112 (755)
Q Consensus 111 ~~ 112 (755)
.+
T Consensus 62 v~ 63 (65)
T 2z30_B 62 AV 63 (65)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.013 Score=64.28 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=64.5
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC----CCCCcc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL----SPEVFN 451 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~----~~~~~~ 451 (755)
.+-++++.+.+. +.++...+++|||+|+.++.|.+. +|..+|+++||.|+|++++ .+... ......
T Consensus 93 v~a~lv~~~~G~------~~D~~~~dv~GkIvlv~~g~~~~~---~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~ 163 (421)
T 2ek8_A 93 VTAELVYVGLGT------TADVAGKDLNGKIALIQRGNISFA---DKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASF 163 (421)
T ss_dssp EEEEEEECTTCC------TTTTTTSCCTTSEEEEECCSSCHH---HHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTC
T ss_pred cceEEEECCCCC------hhhcCCCCcCceEEEEeCCCCCHH---HHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCC
Confidence 345677754431 122333589999999999999877 9999999999999999998 33221 113567
Q ss_pred ccEEEEeccchHHHHHHHH
Q 037455 452 MPFVAVNLKDGELVKKYII 470 (755)
Q Consensus 452 ~p~~~i~~~~g~~l~~~~~ 470 (755)
+|++.++..+++.|+.++.
T Consensus 164 IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 164 VAAVGITKQEGDALAANLR 182 (421)
T ss_dssp CEEEEECHHHHHHHHHHHH
T ss_pred ccEEEeCHHHHHHHHHHhh
Confidence 9999999999999999984
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.041 Score=48.97 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=54.7
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEeeC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVN 734 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 734 (755)
.+.+.+++|+|.|+.+..|++... . -.+++|...++ ++|+++.++|+|.+... + .+++.|.+.- +
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~--~--~F~i~P~~g~L-~pg~~~~i~V~F~P~~~-------g--~~~~~l~v~~-~ 105 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTC--R--PFSIEPAIGTL-NVGESMQLEVEFEPQSV-------G--DHSGRLIVCY-D 105 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECC--T--TEEEESSEEEE-CTTCEEEEEEEECCSSS-------B--CCCCBCEEEE-S
T ss_pred CeEEEEEEEEECCCCCEEEEEecC--C--CeEEECCcCEE-CCCCEEEEEEEEEcCCC-------c--cEEEEEEEEE-C
Confidence 567778899999999888887753 2 47778999999 69999999999998862 2 4566666621 4
Q ss_pred CceEEEeEE
Q 037455 735 GKHLVRSPI 743 (755)
Q Consensus 735 ~~~~v~~P~ 743 (755)
+...+.+++
T Consensus 106 ~g~~~~v~L 114 (122)
T 2ys4_A 106 TGEKVFVSL 114 (122)
T ss_dssp SSCEECCEE
T ss_pred CCCEEEEEE
Confidence 445555444
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.042 Score=60.56 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCc------hhHHHH----HHHHHHcCceEEEEecC-CCC
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGN------VTVYQQ----LEEVRKSGAAGAIFSAD-SRQ 443 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~------~~~~~~----~~~~~~~ga~g~i~~n~-~g~ 443 (755)
...+-++++... ...|.. ..+.+++|||||+.++.|.. ..+..| ..+|.++||+++|++|+ .+.
T Consensus 104 ~~vta~lV~v~~---~~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~ 178 (444)
T 3iib_A 104 QGLSATIVRFDT---LQDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDH 178 (444)
T ss_dssp TCEEEEEEEESS---HHHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCC
T ss_pred CCeEEEEEecCC---HHHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcc
Confidence 345677887542 122322 23468999999999988852 111133 45799999999999987 211
Q ss_pred c--------C-CCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeee
Q 037455 444 H--------L-SPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQI 483 (755)
Q Consensus 444 ~--------~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 483 (755)
. . ......+|++.|+.++++.|+..+..+...++++....
T Consensus 179 ~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 179 DRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp SSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred cccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 0 0 11245799999999999999999988766666665543
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.021 Score=65.54 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=62.3
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCC-Cc-----------
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSR-QH----------- 444 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g-~~----------- 444 (755)
.+-++||.+.+...++- .+. .+++|||+|+.+|.|.+. .|..+|+++||+|+|++++.. ..
T Consensus 108 v~g~lV~vg~G~~~D~~---~l~-vdv~GkIvlv~~g~~~~~---~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~ 180 (640)
T 3kas_A 108 VTGKLVHANFGTKKDFE---DLY-TPVNGSIVIVRAGKITFA---EKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 180 (640)
T ss_dssp EEECEEECTTCCHHHHH---TCS-SCCTTSEEEEESCSSCHH---HHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEE
T ss_pred eEEEEEEecCCChhhHH---Hhh-cccCCcEEEEecCCCCHH---HHHHHHHHCCCeEEEEEeccccccccccccccccc
Confidence 45678886544321111 111 579999999999999887 999999999999999998721 10
Q ss_pred --------CC----------------CCCccccEEEEeccchHHHHHHHH
Q 037455 445 --------LS----------------PEVFNMPFVAVNLKDGELVKKYII 470 (755)
Q Consensus 445 --------~~----------------~~~~~~p~~~i~~~~g~~l~~~~~ 470 (755)
.. .....+|+..|+..+++.|+..+.
T Consensus 181 ~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 181 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00 012468999999999999987653
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.10 E-value=0.015 Score=67.39 Aligned_cols=93 Identities=15% Similarity=0.289 Sum_probs=64.8
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC------CC------
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS------RQ------ 443 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~------g~------ 443 (755)
+.+-++||.+.+...++..-......+++|||+|+++|.|.+. +|..+|+++||+|+|+|++. |.
T Consensus 126 ~v~g~lV~v~~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~---~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~ 202 (707)
T 3fed_A 126 MPEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRG---NKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKG 202 (707)
T ss_dssp CCEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHH---HHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTS
T ss_pred ceEEEEEEecCCchhhHHHHHhccCCCCCCeEEEEECCCCCHh---HHHHHHHHCCCEEEEEEcCchhccccccccCCCC
Confidence 4456888865443222221000013579999999999999888 99999999999999999861 10
Q ss_pred ---------------------cCCC-----------------CCccccEEEEeccchHHHHHHHHh
Q 037455 444 ---------------------HLSP-----------------EVFNMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 444 ---------------------~~~~-----------------~~~~~p~~~i~~~~g~~l~~~~~~ 471 (755)
.+.+ ....||+..|+..+++.|+..+..
T Consensus 203 ~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 203 WNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred ccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0000 125789999999999999987643
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.01 E-value=1.5 Score=39.81 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=63.0
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcC----CCcEEEEEeCeEEEecCCcEEEEEEEEEecCCccc-CCCCCCeeEEEEEE
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAP----AGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAV-SPKSNFLGNFGYLT 729 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~-~~~~~~~~~~G~~~ 729 (755)
...+.+++|+|.|.-+.+|++..... ..-.++++|..-++ .+|++.+++|++........ ...+.. -++.-|+
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~-~l~diLv 120 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGED-KIEDILV 120 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSS-CSCEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchh-hhheeEE
Confidence 35566779999999999999985321 12347788999999 79999999999987541000 001111 4566777
Q ss_pred EEee-CCceEEEeEEEEEEcC
Q 037455 730 WYDV-NGKHLVRSPIVSAFAN 749 (755)
Q Consensus 730 ~~~~-~~~~~v~~P~~~~~~~ 749 (755)
+ . .+.+...+|+...+..
T Consensus 121 L--~Ve~G~d~fI~v~g~~~p 139 (140)
T 3qbt_B 121 L--HLDRGKDYFLTISGNYLP 139 (140)
T ss_dssp E--EETTSCEEEEEEEEEECC
T ss_pred E--EeecCCcEEEEEeccccC
Confidence 7 4 6667888999888765
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.75 E-value=1.3 Score=38.12 Aligned_cols=56 Identities=7% Similarity=0.132 Sum_probs=43.3
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEc-CCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKA-PAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
...+.+++|+|.|+.+..|++.... +.+...+++|..-.+ .+|++++++|+|.+..
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII 82 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC
Confidence 3566677999999999999984211 112347789999999 6899999999999875
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.2 Score=61.25 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.6
Q ss_pred CCCCCccEEEEEcccccCCCCCCc
Q 037455 134 AGFGSDIIVGILDTGIWPESKSYD 157 (755)
Q Consensus 134 ~~~G~Gv~VgVIDtGid~~Hp~f~ 157 (755)
.+.|+||+|||+|||||+.+|-|+
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 578999999999999999999996
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=89.63 E-value=1.6 Score=38.26 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=46.4
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLG 712 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 712 (755)
-...+++.|.|....+.+|.++++..+++.+. .+..+++ ++|+..++.|.|..+..
T Consensus 31 I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 31 VENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEEChH
Confidence 35678889999999999999999887776653 3556888 69999999999999873
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=88.30 E-value=1.3 Score=48.55 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=26.4
Q ss_pred CCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCC
Q 037455 490 PAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPN 528 (755)
Q Consensus 490 ~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~ 528 (755)
..+.++.||++||.. ||+|||++|+++++.+
T Consensus 182 ~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp TTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 346789999999855 9999999999998754
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=84.21 E-value=5.7 Score=38.80 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=57.6
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEeeC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVN 734 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 734 (755)
...+.+++++|.|+.+.+++... .|.-.++. +..-.+ ++|++.+++|+++... ...-+ ...+.|++...+
T Consensus 19 ~~~~~~~~i~N~g~~pl~i~~~~-~p~~~~~~--~~~~~I-~PG~~g~I~vt~~~~~----~~~~G--~~~~~i~v~~~~ 88 (220)
T 2qsv_A 19 DEGVVRLVVNNTDESDLQVAVVS-LPSFVSLD--DRAFRL-QAREPRELNLSLAVPR----NMPPG--MKDEPLVLEVTS 88 (220)
T ss_dssp CCCEEEEEEEECSSSCEEEEEEE-CCTTEECS--CCEEEE-CSSSCEEEEEEECCCT----TCCSE--EEEEEEEEEEEC
T ss_pred CcceEEEEEEeCCCCceEEEecc-CCCceEee--eCccee-CCCCceEEEEEEcchh----cccCC--ceeeEEEEEEEc
Confidence 34566779999999998888754 36654443 444466 6899999999998876 33334 677888885433
Q ss_pred ---Cc-eEEEeEEEEEEc
Q 037455 735 ---GK-HLVRSPIVSAFA 748 (755)
Q Consensus 735 ---~~-~~v~~P~~~~~~ 748 (755)
+. ...++|+.....
T Consensus 89 ~~~~~~~~~~i~v~g~v~ 106 (220)
T 2qsv_A 89 PETGKKAVDSVMVSLPLV 106 (220)
T ss_dssp TTTCCEEEEEEEEEEEEC
T ss_pred CCCCcccccEEEEEEEEc
Confidence 33 345777777554
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=80.40 E-value=13 Score=39.36 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=63.4
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCC----cEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCC-CCCeeEEEEEE
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAG----MKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPK-SNFLGNFGYLT 729 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~-~~~~~~~G~~~ 729 (755)
...+-++||+|.|.-+.+|++....... -.++++|..-++ .+|++.+++|++.......-..+ +.. -++--|+
T Consensus 46 ~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~~~~~~ln~g~~-~l~diLv 123 (366)
T 3qis_A 46 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGED-KIEDILV 123 (366)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCTTTHHHHHHTSS-CSCEEEE
T ss_pred CeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECHHHHHHHhcCcc-ccceEEE
Confidence 4567777999999999999997543222 237889999999 79999999999988762100000 111 3455666
Q ss_pred EEeeCCceEEEeEEEEEEcCC
Q 037455 730 WYDVNGKHLVRSPIVSAFANS 750 (755)
Q Consensus 730 ~~~~~~~~~v~~P~~~~~~~~ 750 (755)
+ .-.+++..-+|+...+..+
T Consensus 124 L-~ve~G~d~FI~v~~~~~~s 143 (366)
T 3qis_A 124 L-HLDRGKDYFLTISGNYLPS 143 (366)
T ss_dssp E-EETTSCEEEEEEEEEECCC
T ss_pred E-EEeCCCcEEEEeccccCCc
Confidence 6 1255677788888888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 755 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-05 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.002 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-05 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-05 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 8e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 8e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 5e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 7e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 3e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 152 bits (383), Expect = 2e-40
Identities = 83/490 (16%), Positives = 153/490 (31%), Gaps = 91/490 (18%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
+ + I+D+G + +
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNANNVT---------------------------------- 46
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
G N S T ++ P + HGTH + TI +GV P +
Sbjct: 47 ----GTNNSGTGNWYQPGNNNAHGTHVAGTIAAIA---------NNEGVVGVMPNQNANI 93
Query: 257 YKVLFSNDNLAAAETDVLAGMDQAIADG-VDIMSLSLAFPETTFDENPIAIGAFAALKRG 315
+ V N+ + ++A +D + G +++++SL +T E + G
Sbjct: 94 HIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHY---NNG 150
Query: 316 IFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLF 375
+ + +AGN+G YS + +V A + + AA ++ +
Sbjct: 151 VLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQV-----------EIS 199
Query: 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435
E I + + + + + +GA
Sbjct: 200 GPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAE 259
Query: 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVA 495
+ F N+ + + + + N G++ I +
Sbjct: 260 CTVNGT-----------SFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIV 308
Query: 496 NFSSRGPSLRSPWIL--KPDILAPGVDILAAW----VPNNPWQPIRDDYLLTDYTLLSGT 549
+S P L++P+++ DI P V + A + DY +GT
Sbjct: 309 YSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGT 368
Query: 550 SMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGA 609
SM+ PH + +A LV + H + S++ +R+AL TAD L VAG G
Sbjct: 369 SMATPHVSGVATLVWSYHPECSASQVRAALNATADDL------------SVAGRDNQTGY 416
Query: 610 GHINPNKAMD 619
G IN A
Sbjct: 417 GMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 79.3 bits (194), Expect = 6e-16
Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 19/182 (10%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD-----YTLLSGT 549
+ + S + APGV IL+ + + + Y GT
Sbjct: 321 YYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGT 380
Query: 550 SMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGA 609
SM+ PH + A++ + IR L TA G D G
Sbjct: 381 SMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF------------NGNGWDHDTGY 428
Query: 610 GHINPNKAMDPGLVVLTGTSDFTCQYANLDLNY--PSFIIILNNTNTASFTFKRVLTNVA 667
G + + A+ L G +F + N+ P+ + + N + + K +A
Sbjct: 429 GLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIA 488
Query: 668 DT 669
Sbjct: 489 RF 490
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 44.6 bits (104), Expect = 3e-05
Identities = 33/212 (15%), Positives = 56/212 (26%), Gaps = 50/212 (23%)
Query: 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG 196
G++IIV ++DTG+ + + +
Sbjct: 153 GTNIIVAVVDTGVDGTHPDLEGQVIAGY-------------------------------- 180
Query: 197 IRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAM 256
GTH + TI +GVAP A+I
Sbjct: 181 ---RPAFDEELPAGTDSSYGGSAGTHVAGTIAAK---------KDGKGIVGVAPGAKIMP 228
Query: 257 YKVL----FSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAAL 312
+ N + V AG+ A G +M+ S ++ A
Sbjct: 229 IVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAME-- 286
Query: 313 KRGIFVACSAGNSGPRPYSIRNGAPWITAVGA 344
+ V + N+ + G P + V A
Sbjct: 287 HGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAA 318
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 66.5 bits (161), Expect = 1e-12
Identities = 54/219 (24%), Positives = 77/219 (35%), Gaps = 40/219 (18%)
Query: 404 AGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGE 463
A Y +G+ +V + + +G G + S SP V G
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGV 145
Query: 464 LVKKYIINVGNATVS----IKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519
LV N G ++S + + T A+FS G G+
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGA---------------GL 190
Query: 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSAL 579
DI+A V P Y L+GTSM+ PH A AALVK + WS+ IR+ L
Sbjct: 191 DIVAPGVNVQSTYPGST------YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 580 MTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAM 618
TA L G+ +G+G +N A
Sbjct: 245 KNTATSL---------------GSTNLYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 38.8 bits (89), Expect = 0.002
Identities = 51/230 (22%), Positives = 78/230 (33%), Gaps = 57/230 (24%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
GS + V +LDTGI +H + + G
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIS------------------------------THPDLNIRG 45
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
SF S +D GHGTH + TI +GVA
Sbjct: 46 GASF-------------VPGEPSTQDGNGHGTHVAGTIA---------ALNNSIGVLGVA 83
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309
P A + KVL + + + + + G++ A +G+ + +LSL P +
Sbjct: 84 PSAELYAVKVL--GASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV---N 138
Query: 310 AALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359
+A RG+ V ++GNSG S AVGA + A+ G
Sbjct: 139 SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGA 188
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 63.0 bits (152), Expect = 2e-11
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 36/135 (26%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I + A+FSS G + +++APG + + + N
Sbjct: 174 IAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTNT------------- 212
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602
Y L+GTSM+ PH A AAL+ + H + S++ +R+ L +TA L G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL---------------G 257
Query: 603 TPLDFGAGHINPNKA 617
+ +G G IN A
Sbjct: 258 SSFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 43.0 bits (100), Expect = 6e-05
Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 54/232 (23%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
V G+++ V +LDTGI SH + ++G
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQA-----------------------------SHPDLNVVG 46
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
SF D GHGTH +GVA
Sbjct: 47 GASF-------------VAGEAYNTDGNGHGTHV---------AGTVAALDNTTGVLGVA 84
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309
P + KVL N + + + + +++G++ A +G+D++++SL + A+
Sbjct: 85 PSVSLYAVKVL--NSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAY 142
Query: 310 AALKRGIFVACSAGNSG-PRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNE 360
A + A ++GNSG + AVGA + A+ ++G E
Sbjct: 143 ARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 36/137 (26%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTD 542
I + + Q A+FSS GP L D++APGV I + N
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------K 213
Query: 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602
Y +GTSM+ PH A AAL+ + H +W++ +RS+L T L G
Sbjct: 214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------G 258
Query: 603 TPLDFGAGHINPNKAMD 619
+G G IN A
Sbjct: 259 DSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 44.1 bits (103), Expect = 3e-05
Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 53/232 (22%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
+ GS++ V ++D+GI SH + K+ G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDS-----------------------------SHPDLKVAG 46
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
S + + +D HGTH V +GVA
Sbjct: 47 GASM------------VPSETNPFQDNNSHGTH---------VAGTVAALNNSIGVLGVA 85
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309
P A + KVL + + + ++ G++ AIA+ +D++++SL P + A
Sbjct: 86 PSASLYAVKVL--GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAV 143
Query: 310 AALKRGIFVACSAGNSGP-RPYSIRNGAPWITAVGAGTVDREFAAHVTLGNE 360
A+ + A + G SG P + AVGA + A+ ++G E
Sbjct: 144 ASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPE 195
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 58.7 bits (140), Expect = 8e-10
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNA 589
P + + Y +SGTSM+ PH + +AA + A + S+ +RS L A +D
Sbjct: 230 PGSSVYSTWYNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289
Query: 590 YGMITDKSTGVAGTPLDFGAGHIN 613
G G G G
Sbjct: 290 GG-----YGAAIGDDYASGFGFAR 308
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 18/120 (15%)
Query: 505 RSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALV- 563
+KPD++APG IL+A P ++ + GTSM+ P A A +
Sbjct: 211 TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYM-GGTSMATPIVAGNVAQLR 269
Query: 564 ----KATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619
K + +++AL+ A G+ + G G + +K+++
Sbjct: 270 EHFVKNRGITPKPSLLKAALIAGAA------------DIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.0 bits (128), Expect = 3e-08
Identities = 15/96 (15%), Positives = 33/96 (34%)
Query: 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
+ + D GTS + P AA + L+ + + + ++ + +A
Sbjct: 238 TYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 297
Query: 584 DVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619
L+ S +G G I+ +K ++
Sbjct: 298 VGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIE 333
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 4e-08
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 523 AAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582
+ N Q + D +GTS S P AA I AL +++ + ++ ++ T
Sbjct: 233 YSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQT 292
Query: 583 ADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619
+ G + +G G ++ +
Sbjct: 293 SKPAHLNADDWATNGVGRKVSH-SYGYGLLDAGAMVA 328
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 36/230 (15%), Positives = 64/230 (27%), Gaps = 53/230 (23%)
Query: 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIG 189
W S + ++DTG+ D + + + + + +H
Sbjct: 23 AWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAA 82
Query: 190 ARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVA 249
+ + GI G+A
Sbjct: 83 ETNNATGIA------------------------------------------------GMA 94
Query: 250 PMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309
P RI + L + N + +D+ + A G ++++LSL T A+
Sbjct: 95 PNTRILAVRAL--DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAW 152
Query: 310 AALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359
G V +AGN+G + AVGA A+ G
Sbjct: 153 NK---GSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGT 199
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 46.1 bits (108), Expect = 8e-06
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNA 589
P I Y +SGTSM+ PH A +AAL+ + ++ IR A+ TAD +
Sbjct: 206 PGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADKIS-- 261
Query: 590 YGMITDKSTGVAGTPLDFGAGHINPNKAMD 619
GT F G IN A+
Sbjct: 262 ------------GTGTYFKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 46.6 bits (109), Expect = 5e-06
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 519 VDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSA 578
VD+ A P Y LSGTSM+ PH A +A L+ + R + IR+A
Sbjct: 200 VDVAAPGSSIYSTYPTST------YASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAA 251
Query: 579 LMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619
+ TAD + GT + G +N KA+
Sbjct: 252 IENTADKIS--------------GTGTYWAKGRVNAYKAVQ 278
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 43.2 bits (100), Expect = 7e-05
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 547 SGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587
SGTSM+ PH A +AA + + +++A R + TA+ D
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGD 260
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 16/148 (10%)
Query: 198 RQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMY 257
NGL T + + G A A +
Sbjct: 49 SANGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQSIV---------GSAGGAVQQLL 99
Query: 258 KVLFSNDNLAAAETDVLAGMDQAIAD-GVDIMSLSLAFPETTFDENPIAIGAFAALK--- 313
+ D A+ T + +QA++D ++++SL + E + +
Sbjct: 100 FYM--ADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAA 157
Query: 314 -RGIFVACSAGNSGPRPYSIRNGAPWIT 340
+G + S+G+ G + R T
Sbjct: 158 AQGQTFSVSSGDEGVYECNNRGYPDGST 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.85 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.64 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.3 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.29 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.38 | |
| d1grwa_ | 124 | Major sperm protein, MSP {Nematode (Caenorhabditis | 80.34 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=2.2e-53 Score=495.15 Aligned_cols=366 Identities=20% Similarity=0.181 Sum_probs=264.9
Q ss_pred CCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHH----HH--hhcCCCe
Q 037455 29 DRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQL----EQ--LQKMPGH 102 (755)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~----~~--L~~~~~V 102 (755)
.+++|||+||+..+ .++++++. +.++++++. .++.+.++++...+ +. +..+|+|
T Consensus 30 ~~~~~iV~~k~~~~----------~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 89 (671)
T d1r6va_ 30 TEGKILVGYNDRSE----------VDKIVKAV---------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGI 89 (671)
T ss_dssp CTTEEEEEESSHHH----------HHHHHHHH---------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSE
T ss_pred CCCeEEEEECCccC----------HHHHHHhc---------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCc
Confidence 47899999996531 22233333 357777777 67778888764332 22 3457999
Q ss_pred EEEEeceeecccccc---------------------------CCcccccccc--CCCCcCCCCCCccEEEEEcccccCCC
Q 037455 103 HATYLESFGHLHTTR---------------------------TPQFLGLKKH--AGVWPAAGFGSDIIVGILDTGIWPES 153 (755)
Q Consensus 103 ~~v~~~~~~~~~~~~---------------------------~~~~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~H 153 (755)
++|+|+...++.... ....|+++.+ ...|....+|+||+|||||||||++|
T Consensus 90 ~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~H 169 (671)
T d1r6va_ 90 RYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTH 169 (671)
T ss_dssp EEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTS
T ss_pred eEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCC
Confidence 999998655432110 0012333332 22333456899999999999999999
Q ss_pred CCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCC
Q 037455 154 KSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQ 233 (755)
Q Consensus 154 p~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 233 (755)
|+|.++ ++..+++..+... ....++.|+.||||||||||||+..+
T Consensus 170 pdl~~~---------------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~VAGiiaa~~~~ 214 (671)
T d1r6va_ 170 PDLEGQ---------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAKKDG 214 (671)
T ss_dssp GGGTTT---------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCCCSS
T ss_pred hhhcCC---------------------------cccCccccccCCC--------CCCCcCcccCCCCccccceeeeeccc
Confidence 999753 2222222221110 11123567889999999999997422
Q ss_pred CCcccccCCceeeeecCCCeEEEEEEeecC----CCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCHHHHHHH
Q 037455 234 DVDHFGYAKGTAIGVAPMARIAMYKVLFSN----DNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAF 309 (755)
Q Consensus 234 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~----g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~ 309 (755)
..+.||||+|+|+++|++++. +......+++++||+||+++|++|||||||+. .....+..++.
T Consensus 215 ---------~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~---~~~~~~~~ai~ 282 (671)
T d1r6va_ 215 ---------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGW---GYSYTMKEAFD 282 (671)
T ss_dssp ---------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHHHHHHHH
T ss_pred ---------cceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEecccccc---cCChHHHHHHH
Confidence 124899999999999999642 11125677899999999999999999999985 33457788888
Q ss_pred HHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCC
Q 037455 310 AALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNR 388 (755)
Q Consensus 310 ~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (755)
.+.++|+++|+||||++.+. ...++..|++|+|||.+...
T Consensus 283 ~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~--------------------------------------- 323 (671)
T d1r6va_ 283 YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG--------------------------------------- 323 (671)
T ss_dssp HHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET---------------------------------------
T ss_pred HHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC---------------------------------------
Confidence 99999999999999998754 46778899999999843110
Q ss_pred CCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHH
Q 037455 389 SKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKY 468 (755)
Q Consensus 389 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~ 468 (755)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCC-----CCCCCcccce
Q 037455 469 IINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQP-----IRDDYLLTDY 543 (755)
Q Consensus 469 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y 543 (755)
....++.||+|||.. ||+|||++|+++++....... .......+.|
T Consensus 324 ---------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y 374 (671)
T d1r6va_ 324 ---------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374 (671)
T ss_dssp ---------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCE
T ss_pred ---------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCee
Confidence 012568999999975 999999999999875432211 1111234589
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCCCC
Q 037455 544 TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 621 (755)
..++|||||||||||++|||+|++|+|++.|||++|++||+++.. +..+..||||+||+.+||+..
T Consensus 375 ~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vna~~Av~~~ 440 (671)
T d1r6va_ 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG------------NGWDHDTGYGLVKLDAALQGP 440 (671)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS------------SSCBTTTBTCBCCHHHHHHCC
T ss_pred eeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcccChhCHHHHhhCc
Confidence 999999999999999999999999999999999999999998743 234568999999999998754
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.8e-49 Score=442.30 Aligned_cols=367 Identities=22% Similarity=0.246 Sum_probs=237.5
Q ss_pred CCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCC
Q 037455 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTD 208 (755)
Q Consensus 129 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 208 (755)
.+|+ .+|+||+|||||||||++||+|.++ ++..+++... .
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~-----------~ 54 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT-----------G 54 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS-----------C
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC-----------C
Confidence 3554 4799999999999999999999753 2233333221 1
Q ss_pred CCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecC--CCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCC
Q 037455 209 DYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAP--MARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGV 285 (755)
Q Consensus 209 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~ 285 (755)
+..++.|++||||||||||||+..+ ..+.|||| +++|+.+|++..... +...++++||+++++ .++
T Consensus 55 ~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~ 123 (435)
T d1v6ca_ 55 NWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGW--GYSSSLVAAIDTCVNSGGA 123 (435)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEE--CCSSCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeeccccccc--chhhhhhhHHHHHhhcccc
Confidence 2234778999999999999997532 12489999 899999999987654 677789999999996 599
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEE----------
Q 037455 286 DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHV---------- 355 (755)
Q Consensus 286 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~---------- 355 (755)
+|||+|||... ....+..++..+.++|+++|+||||+|+...++++..+++|+||+++.+.......
T Consensus 124 ~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~a 200 (435)
T d1v6ca_ 124 NVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISG 200 (435)
T ss_dssp SEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEE
T ss_pred eEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEee
Confidence 99999999863 23456777888999999999999999999888899999999999976654321100
Q ss_pred -------EeCCceEEEeeeeccC-CCCCCc---eeeEEeccCC-----------CCCccc--CCCCCCCccccceEEEEe
Q 037455 356 -------TLGNEELTVIGKSVYP-ENLFVS---REPIYFGYGN-----------RSKEIC--EPNSTDSKAVAGKYIFCA 411 (755)
Q Consensus 356 -------~~~~g~~~~~g~~~~~-~~~~~~---~~~~~~~~~~-----------~~~~~c--~~~~~~~~~~~gkivl~~ 411 (755)
+...+........... ..+... ...+...+.. .....| ........++.+++.++.
T Consensus 201 pG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (435)
T d1v6ca_ 201 PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVE 280 (435)
T ss_dssp ECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEE
T ss_pred cccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceee
Confidence 0111111000000000 000000 0000000000 000000 011122334566666666
Q ss_pred ecCCC--chhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCc
Q 037455 412 FDYNG--NVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTK 489 (755)
Q Consensus 412 ~g~~~--~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 489 (755)
+.... ..............+..+++.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 311 (435)
T d1v6ca_ 281 RVGNQGSSYPEINSTKACKTAGAKGIIVYSN------------------------------------------------- 311 (435)
T ss_dssp CCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-------------------------------------------------
T ss_pred ccCCccccceeeeeceeecccCCcceEEecc-------------------------------------------------
Confidence 64332 111224555555666655554433
Q ss_pred CCCccccccCCCCCCCC--CCcccCeeEeCCCcEEeeecCCC----CCCCCCCCCcccceeeeccccchhhHHHHHHHHH
Q 037455 490 PAPQVANFSSRGPSLRS--PWILKPDILAPGVDILAAWVPNN----PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALV 563 (755)
Q Consensus 490 ~~~~~a~fSs~Gp~~~~--~g~lKPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 563 (755)
+.+|.... .+..||||.+||..|.++..... .............|..|||||||||||||++|||
T Consensus 312 ---------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 382 (435)
T d1v6ca_ 312 ---------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLV 382 (435)
T ss_dssp ---------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHH
T ss_pred ---------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHH
Confidence 22222211 14678999999988865432100 0000000112247999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCC
Q 037455 564 KATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 564 ~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
+|+||+|+++|||++||+||+++. .++++++||+|+||+.+|++
T Consensus 383 ~q~~P~~s~~~vk~~L~~TA~~~~------------~~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 383 WSYHPECSASQVRAALNATADDLS------------VAGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHCTTSCHHHHHHHHHHHSBCCS------------SSSCBTTTBTCBCCHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHhhCcccC------------CCCCCCCcccceecHHHHHH
Confidence 999999999999999999999873 34567899999999999975
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=9.8e-49 Score=409.85 Aligned_cols=265 Identities=28% Similarity=0.399 Sum_probs=213.3
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|+++. ++.+|+++.+|+||+|||||||||++||+|.++ ++..++|...
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~--- 62 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN--- 62 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT---
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC---
Confidence 44443 356999999999999999999999999999742 4444444332
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
...+.|.++|||||||+|+|...+ .+.+.||||+|+|+.+|+++..+. +...++++||+|
T Consensus 63 ----------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~ 122 (280)
T d1dbia_ 63 ----------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGS--GTLSDIADAIIY 122 (280)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSC--CCHHHHHHHHHH
T ss_pred ----------CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCC--cCHHHHHHHHHH
Confidence 123668899999999999987533 223589999999999999987776 788999999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCC
Q 037455 280 AIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 280 a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
++++|++|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+||+.+
T Consensus 123 a~~~g~~iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~------------- 186 (280)
T d1dbia_ 123 AADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD------------- 186 (280)
T ss_dssp HHHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC-------------
T ss_pred HHHcCCcEeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec-------------
Confidence 99999999999999853 33456667778899999999999999988777888899999999732
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
..+.++.||++||.. |++|||.
T Consensus 187 --------------------------------------------------~~~~~a~~S~~g~~~--------d~~apg~ 208 (280)
T d1dbia_ 187 --------------------------------------------------QYDRLASFSNYGTWV--------DVVAPGV 208 (280)
T ss_dssp --------------------------------------------------TTSCBCTTBCCSTTC--------CEEEECS
T ss_pred --------------------------------------------------CCCCcCCcCCCCCcc--------cccCCcc
Confidence 124678999999875 9999999
Q ss_pred cEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCC
Q 037455 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599 (755)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 599 (755)
+|++..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 209 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~----------- 262 (280)
T d1dbia_ 209 DIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG----------- 262 (280)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-----------
T ss_pred ceeccccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-----------
Confidence 999998764 8999999999999999999999995 55899999999999987632
Q ss_pred CCCCCCcccccccCcCccCC
Q 037455 600 VAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 600 ~~~~~~~~G~G~in~~~Av~ 619 (755)
++..||+|+||+.+||+
T Consensus 263 ---~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 ---TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp ---BTTTBSSEECCHHHHHT
T ss_pred ---CCCcCCCCeEcHHHHcC
Confidence 23589999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4.1e-48 Score=404.40 Aligned_cols=258 Identities=31% Similarity=0.465 Sum_probs=214.0
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|.++++|+||+|||||||||++||+|+ +...++|..+.
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~~--------- 54 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE--------- 54 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC---------
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCCC---------
Confidence 3568999999999999999999999999994 23334444321
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
..+.|.++|||||||||++..... .+.|+||+|+|+.+|+++..+. ...++++++++++.+++++
T Consensus 55 ----~~~~d~~gHGT~vAgii~~~~~~~---------~~~gvap~a~i~~~~~~~~~~~--~~~~~i~~ai~~a~~~~~~ 119 (274)
T d1r0re_ 55 ----AYNTDGNGHGTHVAGTVAALDNTT---------GVLGVAPSVSLYAVKVLNSSGS--GSYSGIVSGIEWATTNGMD 119 (274)
T ss_dssp ----CTTCCSSSHHHHHHHHHHCCSSSS---------BCCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHHHHHTTCS
T ss_pred ----CCCCCccccccccccccccccccc---------cccccCCCcEEEEEEEeCCCCC--cCHHHHHHHHHHHHhcCCc
Confidence 235578899999999999875321 2379999999999999988765 6788999999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC----ccccCCCceEEeccccccceeeEEEEeCCceE
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY----SIRNGAPWITAVGAGTVDREFAAHVTLGNEEL 362 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 362 (755)
|+|+|||... ..........++.++++++|+||||+|.... ..+...+++|+||+.+
T Consensus 120 i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~---------------- 180 (274)
T d1r0re_ 120 VINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD---------------- 180 (274)
T ss_dssp EEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC----------------
T ss_pred eecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC----------------
Confidence 9999999853 2345566667888999999999999986532 4456678899999732
Q ss_pred EEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCC
Q 037455 363 TVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSR 442 (755)
Q Consensus 363 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g 442 (755)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T d1r0re_ 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEE
Q 037455 443 QHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDIL 522 (755)
Q Consensus 443 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~ 522 (755)
..+.+++||++||. |||+|||++|+
T Consensus 181 -----------------------------------------------~~~~~~~~s~~g~~--------~di~APG~~i~ 205 (274)
T d1r0re_ 181 -----------------------------------------------SNSNRASFSSVGAE--------LEVMAPGAGVY 205 (274)
T ss_dssp -----------------------------------------------TTSCBCTTCCCSTT--------EEEEEECSSEE
T ss_pred -----------------------------------------------CCCCcccccCCCCC--------EEEEecCCCcc
Confidence 12367899999974 59999999999
Q ss_pred eeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCC
Q 037455 523 AAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602 (755)
Q Consensus 523 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 602 (755)
++.+.+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 206 ~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------- 257 (274)
T d1r0re_ 206 STYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------- 257 (274)
T ss_dssp EEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS---------------
T ss_pred cccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------------
Confidence 998775 8999999999999999999999999999999999999999998753
Q ss_pred CCCcccccccCcCccCC
Q 037455 603 TPLDFGAGHINPNKAMD 619 (755)
Q Consensus 603 ~~~~~G~G~in~~~Av~ 619 (755)
++..||+|+||+.+||+
T Consensus 258 ~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp CHHHHTTCBCCHHHHTC
T ss_pred CCCceEcCeecHHHhcC
Confidence 23589999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.3e-47 Score=399.69 Aligned_cols=264 Identities=30% Similarity=0.426 Sum_probs=221.2
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|+++. +..+|+.+ +|+||+|+|||||||++||+|.+ +++..++|.++.
T Consensus 13 w~l~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~~-- 62 (279)
T d1thma_ 13 YGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDND-- 62 (279)
T ss_dssp CHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTTB--
T ss_pred cChhhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcC---------------------------CeeccccccccC--
Confidence 44443 35689887 89999999999999999999975 244555554431
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
..+.|..+|||||||+|++...++ ..+.||||+|+|+.+|++...+. +...+++++|++
T Consensus 63 -----------~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~ 121 (279)
T d1thma_ 63 -----------STPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGS--GTWTAVANGITY 121 (279)
T ss_dssp -----------SCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHH
T ss_pred -----------cccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCC--CcHHHHHHHHHH
Confidence 246678999999999999975432 23489999999999999988775 788899999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCC
Q 037455 280 AIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 280 a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
+++.+++|+|||||... .......+...+.++|+++|+|+||+|......+...+++++|||.+
T Consensus 122 ~~~~~~~i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~------------- 185 (279)
T d1thma_ 122 AADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD------------- 185 (279)
T ss_dssp HHHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC-------------
T ss_pred HhhcCCceeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCcccccccccccccccc-------------
Confidence 99999999999999853 34556677778899999999999999988888888889999999732
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
..+.++.||++|++. ||+|||.
T Consensus 186 --------------------------------------------------~~~~~~~~S~~G~~~--------di~Apg~ 207 (279)
T d1thma_ 186 --------------------------------------------------QNDNKSSFSTYGSWV--------DVAAPGS 207 (279)
T ss_dssp --------------------------------------------------TTSCBCTTCCCCTTC--------CEEEECS
T ss_pred --------------------------------------------------CCCCCccccCCCceE--------EEeeeee
Confidence 124678999999986 9999999
Q ss_pred cEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCC
Q 037455 520 DILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599 (755)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 599 (755)
+|+++.+.+ .|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.
T Consensus 208 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~------------ 260 (279)
T d1thma_ 208 SIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS------------ 260 (279)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT------------
T ss_pred ccccccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC------------
Confidence 999998875 899999999999999999999999765 89999999999998763
Q ss_pred CCCCCCcccccccCcCccCC
Q 037455 600 VAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 600 ~~~~~~~~G~G~in~~~Av~ 619 (755)
..+..||+|+||+.+||+
T Consensus 261 --g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 261 --GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp --TBTTTBSSEECCHHHHHH
T ss_pred --CCCCcceeeeEcHHHhhC
Confidence 234589999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2.2e-47 Score=397.56 Aligned_cols=257 Identities=33% Similarity=0.468 Sum_probs=216.2
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+++++|+||+||||||||| +||+|.. ...++|..+
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~-----------------------------~~~~~~~~~---------- 52 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNI-----------------------------RGGASFVPG---------- 52 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCE-----------------------------EEEEECSTT----------
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCc-----------------------------cccccccCC----------
Confidence 456999999999999999999998 8999952 122333332
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
...+.|.++|||||||||++.... ....|+||+|+|+.+|++...+. .....+.++++++...+++
T Consensus 53 ---~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~ 118 (269)
T d1gcia_ 53 ---EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGS--GSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp ---CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSC--BCHHHHHHHHHHHHHTTCS
T ss_pred ---CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCC--ccHHHHHHHHHHHHhcccc
Confidence 123567889999999999987532 22479999999999999988765 6778899999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEee
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIG 366 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g 366 (755)
+||+|||... .......+...+.++|+++|+||||+|.....+++..+++|+||+.+
T Consensus 119 ~in~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~-------------------- 175 (269)
T d1gcia_ 119 VANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD-------------------- 175 (269)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC--------------------
T ss_pred cccccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEc--------------------
Confidence 9999999853 23455667778899999999999999988888888899999999732
Q ss_pred eeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC
Q 037455 367 KSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS 446 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~ 446 (755)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T d1gcia_ 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
..+.++.||++||.. ||+|||.++.++.+
T Consensus 176 -------------------------------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~ 204 (269)
T d1gcia_ 176 -------------------------------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYP 204 (269)
T ss_dssp -------------------------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEET
T ss_pred -------------------------------------------cCCCcccccCCCCCc--------eEEEeeecceeccC
Confidence 123568899999865 99999999999987
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCc
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLD 606 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 606 (755)
.. .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..
T Consensus 205 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~---------------~~~ 256 (269)
T d1gcia_ 205 GS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS---------------TNL 256 (269)
T ss_dssp TT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC---------------HHH
T ss_pred CC-------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCC
Confidence 65 89999999999999999999999999999999999999999987632 347
Q ss_pred ccccccCcCccCC
Q 037455 607 FGAGHINPNKAMD 619 (755)
Q Consensus 607 ~G~G~in~~~Av~ 619 (755)
||+|+||+++|++
T Consensus 257 ~G~G~ln~~~Avk 269 (269)
T d1gcia_ 257 YGSGLVNAEAATR 269 (269)
T ss_dssp HTTCBCCHHHHTC
T ss_pred cccCeEcHHHhcC
Confidence 9999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.6e-47 Score=401.32 Aligned_cols=260 Identities=31% Similarity=0.458 Sum_probs=214.6
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
++.+|+++++|+||+|||||||||++||+|+. ...++|....
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~-----------------------------~~~~~~~~~~--------- 54 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPSE--------- 54 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTTC---------
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhh-----------------------------cCCccccCCC---------
Confidence 45699999999999999999999999999952 2223332221
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
.....+..+|||||||||+|.... ....||||+|+|+.+|+++.++. ....+++++|+|+++.+++
T Consensus 55 ---~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~--~~~~~~~~ai~~a~~~~~~ 120 (281)
T d1to2e_ 55 ---TNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGS--GQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp ---CCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHHHHHTTCS
T ss_pred ---CCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCC--cCHHHHHHHHHHHHhcccc
Confidence 011224679999999999987422 12379999999999999987765 6778899999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC----ccccCCCceEEeccccccceeeEEEEeCCceE
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY----SIRNGAPWITAVGAGTVDREFAAHVTLGNEEL 362 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 362 (755)
|||+|||.. .....+..+++.+.++|+++|+||||+|.... ..++..+++|+||+.+
T Consensus 121 v~n~S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~---------------- 181 (281)
T d1to2e_ 121 VINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD---------------- 181 (281)
T ss_dssp EEEECEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC----------------
T ss_pred ccccccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec----------------
Confidence 999999975 34566788888899999999999999986532 3466788899999732
Q ss_pred EEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCC
Q 037455 363 TVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSR 442 (755)
Q Consensus 363 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g 442 (755)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T d1to2e_ 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEE
Q 037455 443 QHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDIL 522 (755)
Q Consensus 443 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~ 522 (755)
..+.++.||++||.. |++|||.+|+
T Consensus 182 -----------------------------------------------~~~~~~~~S~~G~~~--------d~~apG~~i~ 206 (281)
T d1to2e_ 182 -----------------------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQ 206 (281)
T ss_dssp -----------------------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEE
T ss_pred -----------------------------------------------CCCCCCcccCCCCCc--------cccCCCCCce
Confidence 123678899999976 9999999999
Q ss_pred eeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCC
Q 037455 523 AAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAG 602 (755)
Q Consensus 523 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 602 (755)
++.+.+ .|..++|||||||+|||++|||+|++|.|++.+||++|++||+++..
T Consensus 207 s~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~-------------- 259 (281)
T d1to2e_ 207 STLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD-------------- 259 (281)
T ss_dssp EEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC--------------
T ss_pred eecCCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC--------------
Confidence 998875 89999999999999999999999999999999999999999997632
Q ss_pred CCCcccccccCcCccCCC
Q 037455 603 TPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 603 ~~~~~G~G~in~~~Av~~ 620 (755)
+..||+|+||+.+||+-
T Consensus 260 -~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 260 -SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -HHHHTTCBCCHHHHTSS
T ss_pred -CCCcccCcccHHHHHhh
Confidence 34799999999999973
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=1.6e-43 Score=375.91 Aligned_cols=293 Identities=26% Similarity=0.328 Sum_probs=219.0
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccc
Q 037455 122 LGLKK--HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQ 199 (755)
Q Consensus 122 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 199 (755)
|++.. +..+|..+++|+||+|||||||||++||+|.++ +...++|......
T Consensus 8 wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~~ 60 (309)
T d2ixta1 8 WGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATTP 60 (309)
T ss_dssp HHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSSC
T ss_pred hhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCCC
Confidence 44443 567999999999999999999999999999753 3444455433211
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHH
Q 037455 200 NGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQ 279 (755)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~ 279 (755)
......|..+|||||||||+|...++ ...+.||||+|+|+.+|++...+. +..++++.++++
T Consensus 61 ---------~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~--~~~~~~~~~~~~ 122 (309)
T d2ixta1 61 ---------INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGS--GYSDDIAAAIRH 122 (309)
T ss_dssp ---------EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSC--CCHHHHHHHHHH
T ss_pred ---------CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCC--cccccccccccc
Confidence 11235578899999999999875332 223489999999999999887765 788889999999
Q ss_pred HHhC-----CCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceee
Q 037455 280 AIAD-----GVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY--SIRNGAPWITAVGAGTVDREFA 352 (755)
Q Consensus 280 a~~~-----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~ 352 (755)
+++. ...|+|+|++... .......+...+.++|+++|+||||++.... ..++..+++++|++........
T Consensus 123 a~~~~~~~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~ 199 (309)
T d2ixta1 123 AADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG 199 (309)
T ss_dssp HHHHHHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT
T ss_pred cccccccccccccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc
Confidence 8875 3468999998753 3445666777888999999999999986654 3445677888888632111000
Q ss_pred EEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCc
Q 037455 353 AHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGA 432 (755)
Q Consensus 353 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga 432 (755)
. .
T Consensus 200 ~--------~---------------------------------------------------------------------- 201 (309)
T d2ixta1 200 T--------Y---------------------------------------------------------------------- 201 (309)
T ss_dssp E--------E----------------------------------------------------------------------
T ss_pred c--------c----------------------------------------------------------------------
Confidence 0 0
Q ss_pred eEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccC
Q 037455 433 AGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKP 512 (755)
Q Consensus 433 ~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKP 512 (755)
..........++++|+... ...||
T Consensus 202 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~v 225 (309)
T d2ixta1 202 ------------------------------------------------------RVADYSSRGYISTAGDYVI--QEGDI 225 (309)
T ss_dssp ------------------------------------------------------EECTTSCCCCTTTTTSSSC--CTTCC
T ss_pred ------------------------------------------------------ccccccccccccccccccc--CCCcc
Confidence 0001123345677777664 56799
Q ss_pred eeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcc
Q 037455 513 DILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGM 592 (755)
Q Consensus 513 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~ 592 (755)
||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+..
T Consensus 226 di~apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~ 292 (309)
T d2ixta1 226 EISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY 292 (309)
T ss_dssp CEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST
T ss_pred eeecCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc
Confidence 9999999999998764 899999999999999999999999999999999999999999987654321
Q ss_pred cccCCCCCCCCCCcccccccCc
Q 037455 593 ITDKSTGVAGTPLDFGAGHINP 614 (755)
Q Consensus 593 ~~~~~~~~~~~~~~~G~G~in~ 614 (755)
......++.+|+|++|+
T Consensus 293 -----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 293 -----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp -----TCCSSSBTTTBTCBCCC
T ss_pred -----CCccCCCcccCCCEecC
Confidence 12345677899999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=3.3e-42 Score=360.27 Aligned_cols=238 Identities=31% Similarity=0.417 Sum_probs=192.7
Q ss_pred CCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCC
Q 037455 133 AAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDS 212 (755)
Q Consensus 133 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (755)
...+|+||+|||||||||++||+|.++ +...+.+. .+
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~~----------------~~ 62 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY----------------YS 62 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS----------------SC
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCCC----------------CC
Confidence 455899999999999999999999753 11111110 12
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC-------CC
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD-------GV 285 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~-------g~ 285 (755)
+.|.++|||||||||+|+. .|+||+|+|+.+|++..... ...+++..+++++... ++
T Consensus 63 ~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (279)
T d2pwaa1 63 SRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGS--GQYSTIIAGMDFVASDKNNRNCPKG 126 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHGGGSCCTTE
T ss_pred cccccCccccccccccccc--------------cccCCCccccceeeecCCcc--cccccccchhheecccccccccccc
Confidence 4577899999999999863 69999999999999987765 6788888999988874 34
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 286 DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 286 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
+|+|+|||.. ..+.+..++..+.++|+++|+||||++.... ..+...|++|+|||.+
T Consensus 127 ~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~------------------ 184 (279)
T d2pwaa1 127 VVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD------------------ 184 (279)
T ss_dssp EEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------
T ss_pred cceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe------------------
Confidence 5999999974 3456777888899999999999999987644 3566788999999732
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
..+.++.||++||.. ||+|||.+|+++
T Consensus 185 ---------------------------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~ 211 (279)
T d2pwaa1 185 ---------------------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILST 211 (279)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------ecCCCccccCCCCcc--------cccccccccccc
Confidence 124678999999975 999999999999
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCC
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTP 604 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 604 (755)
++.+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++.. .
T Consensus 212 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----------------~ 261 (279)
T d2pwaa1 212 WIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----------------L 261 (279)
T ss_dssp ETTT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------C
T ss_pred ccCC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------C
Confidence 8875 899999999999999999999999999999888775 677887542 2
Q ss_pred CcccccccCc
Q 037455 605 LDFGAGHINP 614 (755)
Q Consensus 605 ~~~G~G~in~ 614 (755)
...|+|++|+
T Consensus 262 ~~~g~g~~n~ 271 (279)
T d2pwaa1 262 SNIPFGTVNL 271 (279)
T ss_dssp BSCCTTSCCE
T ss_pred CCCCCCChhh
Confidence 3679999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1e-41 Score=363.41 Aligned_cols=299 Identities=23% Similarity=0.268 Sum_probs=219.4
Q ss_pred CCCCcC-CCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 128 AGVWPA-AGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 128 ~~~~~~-~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
..+|.. |++|+||+|||||||||++||+|.... . .+.++...+.+...
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~----------------~-----~~~~~~~~~~~~~~---------- 59 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE----------------A-----FRGKITALYALGRT---------- 59 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT----------------T-----TTTCEEEEEETTTT----------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc----------------c-----cCCcEEeecCCCCC----------
Confidence 346664 999999999999999999999997420 1 12234433333221
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
.++.|..||||||||||+|+... ..||||+|+|+.+|+++..+........+..+++++...+++
T Consensus 60 ----~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
T d1wmda2 60 ----NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGAR 124 (318)
T ss_dssp ----TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCS
T ss_pred ----CCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCc
Confidence 23567899999999999997432 279999999999999987664324555678999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccc--cCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIR--NGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
|+|+|||.............+...+.++++++|+|+||.|....... ...+.++++.+.......
T Consensus 125 i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~------------- 191 (318)
T d1wmda2 125 IHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS------------- 191 (318)
T ss_dssp EEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-------------
T ss_pred eeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc-------------
Confidence 99999998765555556666666778899999999999997755433 345556666542211000
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
+ .
T Consensus 192 -----~----------------------~--------------------------------------------------- 193 (318)
T d1wmda2 192 -----F----------------------G--------------------------------------------------- 193 (318)
T ss_dssp -----G----------------------C---------------------------------------------------
T ss_pred -----c----------------------c---------------------------------------------------
Confidence 0 0
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
........+..||++||... ...|||++|||.+|+++
T Consensus 194 -----------------------------------------~~~~~~~~~~~~s~~G~~~~--~~~~~~~~a~G~~i~~~ 230 (318)
T d1wmda2 194 -----------------------------------------SYADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILSA 230 (318)
T ss_dssp -----------------------------------------GGGSCTTSBCTTSCCCCCTT--SCCCCCEEEECSSEEEE
T ss_pred -----------------------------------------cccccccccccccccCCCcC--CCcccceeecCceEEec
Confidence 00012235678999999886 57899999999999998
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC-----CCCCHHHHHHHHHccccccccCCcccccCCCC
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH-----RDWSSAAIRSALMTTADVLDNAYGMITDKSTG 599 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 599 (755)
......... ........|..++|||||||+|||++|||+|++ +.+++.+||++|++||+++.
T Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~------------ 297 (318)
T d1wmda2 231 RSSLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG------------ 297 (318)
T ss_dssp CCTTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS------------
T ss_pred cccccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC------------
Confidence 776432211 111123468889999999999999999999975 46789999999999999763
Q ss_pred CCCCCCcccccccCcCccCC
Q 037455 600 VAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 600 ~~~~~~~~G~G~in~~~Av~ 619 (755)
.+.+...||||+||+.+||+
T Consensus 298 ~~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 298 LGYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp SCSSCTTTTTCBCCHHHHHT
T ss_pred CCCCCCCeeeceecHHHHhC
Confidence 33456789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.6e-39 Score=345.89 Aligned_cols=283 Identities=18% Similarity=0.179 Sum_probs=189.3
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
..+|.++.+|+||+|||||||||++||+|.++- ..+..| ++.... ...
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~------------~~~~~~-------------~~~~~~-------~~~ 74 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------DPGASF-------------DVNDQD-------PDP 74 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------CGGGCE-------------ETTTTB-------SCC
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc------------ccCCCc-------------cccCCC-------Ccc
Confidence 458999999999999999999999999997531 001111 010000 011
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCCc
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGVD 286 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~d 286 (755)
.+.....|..+|||||||||+|...++.. ..|+||+++++.+|+++. ...+.+.++.++++ .+++
T Consensus 75 ~~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 140 (334)
T d1p8ja2 75 QPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDG------EVTDAVEARSLGLNPNHIH 140 (334)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSS------CCCHHHHHHHHTSCTTTCC
T ss_pred ccccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhccc------cccchHHHHHHHhhhcCCc
Confidence 12223457899999999999998644321 379999999999998753 34456677777775 6899
Q ss_pred EEEEccCCCCC-CCCCC--------HHHHHHHHHHhCCcEEEEecCCCCCCCCccc----cCCCceEEeccccccceeeE
Q 037455 287 IMSLSLAFPET-TFDEN--------PIAIGAFAALKRGIFVACSAGNSGPRPYSIR----NGAPWITAVGAGTVDREFAA 353 (755)
Q Consensus 287 VIn~SlG~~~~-~~~~~--------~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~~~~~~ 353 (755)
++|||||.... ..... ....+...+..+|+++|+||||++....... ...+.+++|++.+
T Consensus 141 ~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~------- 213 (334)
T d1p8ja2 141 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------- 213 (334)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC-------
T ss_pred EEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc-------
Confidence 99999997642 11111 1223333456789999999999876543222 1223344444321
Q ss_pred EEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCce
Q 037455 354 HVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAA 433 (755)
Q Consensus 354 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~ 433 (755)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCe
Q 037455 434 GAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPD 513 (755)
Q Consensus 434 g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPD 513 (755)
..+..+.||++|+... .+
T Consensus 214 --------------------------------------------------------~~g~~~~~s~~~~~~~------~~ 231 (334)
T d1p8ja2 214 --------------------------------------------------------QFGNVPWYSEACSSTL------AT 231 (334)
T ss_dssp --------------------------------------------------------TTSCCCTTCCBCTTCC------EE
T ss_pred --------------------------------------------------------cCCceeeecccCCccc------cc
Confidence 1234556677766542 14
Q ss_pred eEeCCCc-----EEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccc
Q 037455 514 ILAPGVD-----ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDN 588 (755)
Q Consensus 514 I~APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~ 588 (755)
..+||.. +.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~ 298 (334)
T d1p8ja2 232 TYSSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHL 298 (334)
T ss_dssp EECCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTC
T ss_pred cccccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 4455432 3333222 378899999999999999999999999999999999999999998764
Q ss_pred CCcccccCCCCCCCCCCcccccccCcCccCC
Q 037455 589 AYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 589 ~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
......... .....+..||+|+||+.+||+
T Consensus 299 ~~~~~~~~~-~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 299 NADDWATNG-VGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp CCSCCEECT-TSCEEBTTTBTCBCCHHHHHH
T ss_pred CCccccccC-CCcccCCCCcceEeCHHHHHH
Confidence 433222211 222334588999999999986
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-39 Score=346.10 Aligned_cols=287 Identities=17% Similarity=0.159 Sum_probs=200.7
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|.++++|+||+|||||||||++||+|.++-.. .+.++|.+...
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~-------------------------~~~~~~~~~~~-------- 81 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------------EGSWDFNDNTN-------- 81 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-------------------------GGCEETTTTBS--------
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc-------------------------ccccccccCCC--------
Confidence 345899999999999999999999999999853100 01223332211
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
......++.+|||||||+|+|....+. .+.||||+|+|+.++++... ....++..++.++++. .+
T Consensus 82 --~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~ 146 (339)
T d2id4a2 82 --LPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSGD----ITTEDEAASLIYGLDV-ND 146 (339)
T ss_dssp --CCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTSC----CCHHHHHHHTTTTTTT-CS
T ss_pred --ccCCCcccccccceeeecccccccccc--------cccccccccccceEEEeecc----ccchHHHHHHHHHHhh-CC
Confidence 112244578999999999998754322 23799999999999987543 4677778888887665 58
Q ss_pred EEEEccCCCCCCCC----CCH-----HHHHHHHHHhCCcEEEEecCCCCCCCCcc--cc--CCCceEEeccccccceeeE
Q 037455 287 IMSLSLAFPETTFD----ENP-----IAIGAFAALKRGIFVACSAGNSGPRPYSI--RN--GAPWITAVGAGTVDREFAA 353 (755)
Q Consensus 287 VIn~SlG~~~~~~~----~~~-----~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVga~~~~~~~~~ 353 (755)
|+|+|+|....... ... ...+...+..+|+++|+||||++...... +. ..+.+++|++.
T Consensus 147 v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~-------- 218 (339)
T d2id4a2 147 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI-------- 218 (339)
T ss_dssp EEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE--------
T ss_pred EEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc--------
Confidence 99999997542111 111 22333355568999999999987543221 11 12233333321
Q ss_pred EEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCce
Q 037455 354 HVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAA 433 (755)
Q Consensus 354 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~ 433 (755)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCe
Q 037455 434 GAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPD 513 (755)
Q Consensus 434 g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPD 513 (755)
...+..+.||++|+.. ...++
T Consensus 219 -------------------------------------------------------~~~g~~~~~s~~~~~~----~~~~~ 239 (339)
T d2id4a2 219 -------------------------------------------------------DHKDLHPPYSEGCSAV----MAVTY 239 (339)
T ss_dssp -------------------------------------------------------CTTSCCCTTCCCCTTE----EEEEE
T ss_pred -------------------------------------------------------cccccccccccccCcc----ceeee
Confidence 1223556778887764 45668
Q ss_pred eEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCccc
Q 037455 514 ILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMI 593 (755)
Q Consensus 514 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~ 593 (755)
..+||..+.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++......
T Consensus 240 ~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~ 307 (339)
T d2id4a2 240 SSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD 307 (339)
T ss_dssp CSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGC
T ss_pred eeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcc
Confidence 889999998876554 37889999999999999999999999999999999999999999876543221
Q ss_pred ccCCCCCCCCCCcccccccCcCccCCC
Q 037455 594 TDKSTGVAGTPLDFGAGHINPNKAMDP 620 (755)
Q Consensus 594 ~~~~~~~~~~~~~~G~G~in~~~Av~~ 620 (755)
............+||||+||+.+||+.
T Consensus 308 ~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 308 WRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp CEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred ccccCCCCCcCCCccchhhCHHHHHHH
Confidence 111112334456799999999999973
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=6.1e-31 Score=283.71 Aligned_cols=314 Identities=16% Similarity=0.139 Sum_probs=182.4
Q ss_pred cCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCC
Q 037455 132 PAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYD 211 (755)
Q Consensus 132 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 211 (755)
.++++|+||+|||||||||++||+|.+. |+ .+... ....
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~-------~~~~~--------------------------~~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FA-------SLGVS--------------------------APQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HH-------HTTCC--------------------------CCCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hh-------hcCCC--------------------------CCCC
Confidence 4689999999999999999999999631 10 00000 0001
Q ss_pred CCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH---hCCCcEE
Q 037455 212 SPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI---ADGVDIM 288 (755)
Q Consensus 212 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~---~~g~dVI 288 (755)
.+.+.++|+|||+|++++...... .....+.||||+|+|+.+|++.. ...++.++++++ +.+++||
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~Vi 125 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT-------DAGFLNAITTAVHDPTHKPSIV 125 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS-------HHHHHHHHHHHHHCTTTCCSEE
T ss_pred ceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC-------CCchHHHHHHHHHhhhcCCeEE
Confidence 123456788888888765432110 01122489999999999999743 333445555554 4699999
Q ss_pred EEccCCCCCCCC---CCHHHHHHHHHHhCCcEEEEecCCCCCCCC--------ccccCCCceEEeccccccceeeEEEEe
Q 037455 289 SLSLAFPETTFD---ENPIAIGAFAALKRGIFVACSAGNSGPRPY--------SIRNGAPWITAVGAGTVDREFAAHVTL 357 (755)
Q Consensus 289 n~SlG~~~~~~~---~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~~p~vitVga~~~~~~~~~~~~~ 357 (755)
|||||....... ...+......+..+|+++|+|+||+|.... ..+...+++++|++......
T Consensus 126 n~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 198 (357)
T d1t1ga_ 126 SISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVAS------- 198 (357)
T ss_dssp EECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEEC-------
T ss_pred ecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCC-------
Confidence 999998542221 123455556677889999999999985432 22345677888876432111
Q ss_pred CCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEE
Q 037455 358 GNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIF 437 (755)
Q Consensus 358 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~ 437 (755)
.+.. ...+.... ...............+
T Consensus 199 -~~~~--~~~~~~~~-----~~~~~~~~~g~s~~~~-------------------------------------------- 226 (357)
T d1t1ga_ 199 -AGRI--ERETVWND-----GPDGGSTGGGVSRIFP-------------------------------------------- 226 (357)
T ss_dssp -SSCE--EEEEECBC-----HHHHCBCCCEECSSSC--------------------------------------------
T ss_pred -CCcc--ccceeccc-----ccccccccCCcccccc--------------------------------------------
Confidence 0000 00000000 0000000000000000
Q ss_pred ecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeC
Q 037455 438 SADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAP 517 (755)
Q Consensus 438 ~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~AP 517 (755)
...........+++.+++.. ++.|||+.++
T Consensus 227 ------------------------------------------------~p~~~~~~~~~~~~~~~~~~--~~~~pd~~~~ 256 (357)
T d1t1ga_ 227 ------------------------------------------------LPSWQERANVPPSANPGAGS--GRGVPDVAGN 256 (357)
T ss_dssp ------------------------------------------------CCGGGTTSCCCCCSSTTCCC--CCEECSEEEE
T ss_pred ------------------------------------------------cCcccccccccccccCCCCC--Cceecceecc
Confidence 00011234566777777765 7999999998
Q ss_pred CCcE--EeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC---CCHHHHHHHHHccccccccCCcc
Q 037455 518 GVDI--LAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD---WSSAAIRSALMTTADVLDNAYGM 592 (755)
Q Consensus 518 G~~I--~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---ls~~~ik~~L~~TA~~~~~~g~~ 592 (755)
+... +++...+ .|..++|||||||||||++|||+|+++. +...+++++...+.+++......
T Consensus 257 ~~~~~~~~~~~~~-------------~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~ 323 (357)
T d1t1ga_ 257 ADPATGYEVVIDG-------------ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNND 323 (357)
T ss_dssp CCTTEEEEEEETT-------------EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCC
T ss_pred cCCCCceEEecCC-------------ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCC
Confidence 7654 4444443 8999999999999999999999999743 23444544433333332211000
Q ss_pred cccC---CCCCCCCCCcccccccCcCccCC
Q 037455 593 ITDK---STGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 593 ~~~~---~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
.... ....+..+..+|+|++|+.++++
T Consensus 324 ~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 324 IANRARIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp CSSSSCCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred CCCCCCcccCccCCCCCccCchhhHHHHHH
Confidence 0000 01344567789999999988775
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=1.9e-29 Score=273.52 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=92.8
Q ss_pred CCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCCcEEEEccC
Q 037455 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGVDIMSLSLA 293 (755)
Q Consensus 215 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~dVIn~SlG 293 (755)
+..+||||+++++.+... ...+.||||+|+|+.+|++.+.+. ....+++++|+||++ .+++|||+|||
T Consensus 66 ~~~~~~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~~Vis~S~g 134 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSA--SGNTGLTQAFNQAVSDNVAKVINVSLG 134 (369)
T ss_dssp TTSCCCBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTS--STTHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CCCCCCCCCCcceeeccc---------cccccccccCceEEEEEEeCCCCC--cchHHHHHHHHHHHHcCCCceeecccc
Confidence 467899999999876521 112479999999999999988775 678899999999996 47999999999
Q ss_pred CCCC----CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-------------ccccCCCceEEecccc
Q 037455 294 FPET----TFDENPIAIGAFAALKRGIFVACSAGNSGPRPY-------------SIRNGAPWITAVGAGT 346 (755)
Q Consensus 294 ~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~~ 346 (755)
.... ....+.+..++.++.++|++||+||||+|.... ..+...+++++|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 135 WCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 8541 222344566777888899999999999986432 2334568889998743
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=3.1e-09 Score=83.68 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEece
Q 037455 30 RKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLES 109 (755)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~~ 109 (755)
+++|||.||++......... ++.+++. +.++.++|+ .||||+++|+++++++|++.|+|.+||+++
T Consensus 1 e~~YIV~fK~~~~~~~~~~~----~~~v~~~---------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~ 66 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMSSAKK----KDVISQK---------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDH 66 (71)
T ss_dssp CEEEEEEECSSSSCCSHHHH----HHHHHTT---------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECC
T ss_pred CCcEEEEECCCCChHHHHHH----HHHHHHc---------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCc
Confidence 36899999998765432222 2223322 579999998 799999999999999999999999999999
Q ss_pred eecc
Q 037455 110 FGHL 113 (755)
Q Consensus 110 ~~~~ 113 (755)
.++.
T Consensus 67 v~~a 70 (71)
T d1scjb_ 67 IAHE 70 (71)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8753
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.64 E-value=1.7e-08 Score=79.72 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=49.3
Q ss_pred CCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceEEEec-cceeEEEEEeCHHHHHHhhcCCC--eEEEE
Q 037455 30 RKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYN-HVMDGFSAVLSKNQLEQLQKMPG--HHATY 106 (755)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~l~~~~~~~L~~~~~--V~~v~ 106 (755)
.|+|||+||++........+..++ .+. +.++.+.|. ..|+||+++++++.+++|+++|+ |.+||
T Consensus 2 aG~YIVvlK~~~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE 68 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDKIRETKDEV----IAE---------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIE 68 (72)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHH----HHH---------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEE
T ss_pred CccEEEEECCCCCHHHHHHHHHHH----Hhc---------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceEC
Confidence 479999999976432222222222 222 356778887 68999999999999999999665 99999
Q ss_pred ece
Q 037455 107 LES 109 (755)
Q Consensus 107 ~~~ 109 (755)
++.
T Consensus 69 ~D~ 71 (72)
T d1v5ib1 69 EDH 71 (72)
T ss_dssp ECC
T ss_pred CCC
Confidence 986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.30 E-value=0.02 Score=47.27 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCcceeeeecCCCCceEEEEEEEEecCCCCce-EEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 641 NYPSFIIILNNTNTASFTFKRVLTNVADTKSA-YTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 641 n~~s~~~~~~~~~~~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
..|++.+.-. ...+++++|+|.++...+ -++.+..|.|=+++ +....+ ++|++++++++|+++.
T Consensus 7 t~p~~~v~pG----~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~ 71 (103)
T d1w8oa1 7 TIPDVALEPG----QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPA 71 (103)
T ss_dssp ECCCEEECTT----CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCT
T ss_pred cCcceeeCCC----CeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCC
Confidence 3455554322 588999999999987754 56888899998775 444567 7999999999999997
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0018 Score=59.78 Aligned_cols=88 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC------------
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ------------ 443 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~------------ 443 (755)
+.+-++||.+-+...++-. + ..+++|||+|+++|.+.+. +|..+|++.||.|+|+|.+..+
T Consensus 38 ~v~g~lVy~n~G~~~Df~~---L-~~~v~GkI~l~r~G~~~~~---~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g 110 (193)
T d1de4c2 38 TVTGKLVHANFGTKKDFED---L-YTPVNGSIVIVRAGKITFA---EKVANAESLNAIGVLIYMDQTKFPIVNAELSFFG 110 (193)
T ss_dssp EEEECEEECSTTCHHHHHT---C-SSCCTTSEEEEESCSSCHH---HHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCE
T ss_pred ceeEEEEEccCCCHHHHHH---h-ccccCceEEEEeCCCCCHH---HHHHHHHHcCceEEEEecCccccCCcCccccccc
Confidence 3456788865554333321 1 3579999999999999888 9999999999999999976100
Q ss_pred --------cCCC----------------CCccccEEEEeccchHHHHHHHH
Q 037455 444 --------HLSP----------------EVFNMPFVAVNLKDGELVKKYII 470 (755)
Q Consensus 444 --------~~~~----------------~~~~~p~~~i~~~~g~~l~~~~~ 470 (755)
.+.+ .-..||+.-|+..+++.|+..+.
T Consensus 111 ~~~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 111 HAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp ECCSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0000 12357999999999999988663
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0058 Score=58.03 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=45.3
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
..+-++||.+-+...++-.-......+++|||+|+++|.+.+. +|+.+|+..||+|+|+|++
T Consensus 52 ~v~g~~VyvnyG~~~Df~~L~~~~gi~~~gkIvl~ryG~~~~~---~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 52 MPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRG---NKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CCEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHH---HHHHHHHHTTCSEEEEECC
T ss_pred ceeEEEEEecCCcHHHHHHHHHhcCCcccceEEEEeCCCCchh---HHHHHHHHcCceEEEEecC
Confidence 4456788865543332211000014579999999999998888 9999999999999999987
|
| >d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: Major sperm protein, MSP species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.34 E-value=3.1 Score=34.60 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=44.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEec
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNIN 710 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 710 (755)
...+..++|+|.++....|++....|.- ..|.|..=.+ .++++..++|++...
T Consensus 23 ~~~~~~l~l~N~s~~~vafKvktt~p~~--y~v~P~~G~i-~p~~~~~i~V~~~~~ 75 (124)
T d1grwa_ 23 DKHTYHIKVINSSARRIGYGIKTTNMKR--LGVDPPCGVL-DPKEAVLLAVSCDAF 75 (124)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEESCTTT--EEEESSEEEE-CTTCEEEEEEEECCC
T ss_pred cEEEEEEEEECCCCCeEEEEEEeCCCce--EEEECCCCEE-CCCCEEEEEEEEecC
Confidence 4566678999999999999999988875 4557987777 799999999999764
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